2024-07-09T22:14:47,341 Created temporary directory: /tmp/pip-build-tracker-wgc5s9be 2024-07-09T22:14:47,342 Initialized build tracking at /tmp/pip-build-tracker-wgc5s9be 2024-07-09T22:14:47,343 Created build tracker: /tmp/pip-build-tracker-wgc5s9be 2024-07-09T22:14:47,343 Entered build tracker: /tmp/pip-build-tracker-wgc5s9be 2024-07-09T22:14:47,344 Created temporary directory: /tmp/pip-wheel-u7xee8jr 2024-07-09T22:14:47,347 Created temporary directory: /tmp/pip-ephem-wheel-cache-0p5grmkt 2024-07-09T22:14:47,369 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-09T22:14:47,372 2 location(s) to search for versions of rnaglib: 2024-07-09T22:14:47,372 * https://pypi.org/simple/rnaglib/ 2024-07-09T22:14:47,372 * https://www.piwheels.org/simple/rnaglib/ 2024-07-09T22:14:47,373 Fetching project page and analyzing links: https://pypi.org/simple/rnaglib/ 2024-07-09T22:14:47,374 Getting page https://pypi.org/simple/rnaglib/ 2024-07-09T22:14:47,375 Found index url https://pypi.org/simple/ 2024-07-09T22:14:47,515 Fetched page https://pypi.org/simple/rnaglib/ as application/vnd.pypi.simple.v1+json 2024-07-09T22:14:47,524 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/a3/f8/38f3ce999f666541abdfed01d71e23c9c918a6b2442d8c88d2d1739930ee/rnaglib-0.0.1-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) 2024-07-09T22:14:47,524 Found link https://files.pythonhosted.org/packages/dc/5d/6e58f6b44267f40696ff7c00daa3a3da57d775144c89150a317e2135afc3/rnaglib-0.0.1.tar.gz (from https://pypi.org/simple/rnaglib/), version: 0.0.1 2024-07-09T22:14:47,525 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/3f/95/0eb19bfc8e420eafc60439ce97e0b64a65a86931fa4badbc4320248c6a30/rnaglib-0.0.2-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) 2024-07-09T22:14:47,526 Found link https://files.pythonhosted.org/packages/25/1c/e32ca46f4e9302dc39ef0f1af0c297583f2144c1dae53327969fd92fbc44/rnaglib-0.0.2.tar.gz (from https://pypi.org/simple/rnaglib/), version: 0.0.2 2024-07-09T22:14:47,526 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/f2/45/7a988b90a2652da74a9115ee713f2693549d80846b2d689af61f1a3ff021/rnaglib-1.0.0-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) 2024-07-09T22:14:47,527 Found link https://files.pythonhosted.org/packages/82/08/ba03a1be69536eae29e70494cbfe34f52a62b75817651012df2277ca9292/rnaglib-1.0.0.tar.gz (from https://pypi.org/simple/rnaglib/), version: 1.0.0 2024-07-09T22:14:47,527 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/3b/de/cf795a08ed80a36dde6632ff30dae32f1e1fad7d3c95c876ec23370b8273/rnaglib-1.0.1-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) 2024-07-09T22:14:47,528 Found link https://files.pythonhosted.org/packages/24/19/9074f7b9bee68f1e962d87b1c632104cdd29f678f67d439bb31cc2661248/rnaglib-1.0.1.tar.gz (from https://pypi.org/simple/rnaglib/), version: 1.0.1 2024-07-09T22:14:47,529 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/90/b3/853f199e5fde9eaec168e992020a1bce30d3a06e62115481f98b8fdcbcd9/rnaglib-2.0.0-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) 2024-07-09T22:14:47,529 Found link https://files.pythonhosted.org/packages/5f/e9/5fc4a056a08b619c3ee40c387a391b06091476574ba7d90c3c1b8a5177db/rnaglib-2.0.0.tar.gz (from https://pypi.org/simple/rnaglib/), version: 2.0.0 2024-07-09T22:14:47,530 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/43/d3/5e0fc72bfa33ce35533aa8edda4401af573b98912857cf8a9076aba9ad5a/rnaglib-2.0.1-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) 2024-07-09T22:14:47,530 Found link https://files.pythonhosted.org/packages/59/b3/8b34d8832c4fc0dddca78c03cf0d8d3891d2dd8fcdc170ace0fc0a875d8b/rnaglib-2.0.1.tar.gz (from https://pypi.org/simple/rnaglib/), version: 2.0.1 2024-07-09T22:14:47,531 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/68/64/7770020a366076609f9555899a81619670cc96061078950b4052faf8935b/rnaglib-2.0.2-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,532 Found link https://files.pythonhosted.org/packages/70/6f/3391d572ad802a6e9e1466b1c9033871612e275299fad4f9ab86fadb88a3/rnaglib-2.0.2.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.0.2 2024-07-09T22:14:47,533 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/18/d4/e74fa266504f52d9dbac5a38b70db78bd5532be3d3adf10c6bc2e6fb51c8/rnaglib-2.0.3-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,534 Found link https://files.pythonhosted.org/packages/24/be/8d19b3b3ee32030b5733b64397e0bf86097b1d745c73fecfc94f791575cb/rnaglib-2.0.3.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.0.3 2024-07-09T22:14:47,534 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/6d/87/18f1b7349605bf131bd801440ddd97f472b0f12d5a102342c69dd90be7e3/rnaglib-2.0.4-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,535 Found link https://files.pythonhosted.org/packages/c0/37/ef1804644facc42ba2c86e0d0466308558fbb547de7b67ed507ab4deaa23/rnaglib-2.0.4.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.0.4 2024-07-09T22:14:47,536 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/a3/4f/68597d04b4c599f134e38e8dfdb12294a879f5c9c10889f79cfbdd88e0ae/rnaglib-2.0.6-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,536 Found link https://files.pythonhosted.org/packages/c8/b9/62da4eff3d4d17a656229340dc63635302e6b8575971ce1a0815eed6d7a0/rnaglib-2.0.6.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.0.6 2024-07-09T22:14:47,537 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/56/3b/9a81ef23778fc4181524f62f8d8f2901625797854d1d8bced2e92e9a2c9d/rnaglib-2.0.7-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,538 Found link https://files.pythonhosted.org/packages/e7/83/ec0ec023dcc6787b88c43334509fa57e3edbbe1609298fac25381208b0ef/rnaglib-2.0.7.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.0.7 2024-07-09T22:14:47,538 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/e3/5b/a5df91ca5ad58aedd933e491fa96d2feedc7604ae77ffad06ab806435c06/rnaglib-2.0.8-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,539 Found link https://files.pythonhosted.org/packages/92/96/6760c80c6e11b073952145bdc4b0c69f04fca09929526654434c3a184643/rnaglib-2.0.8.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.0.8 2024-07-09T22:14:47,540 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/8f/73/b082eac738c41ac2626a919c829fe5091610fb223de8641089da1be32f0c/rnaglib-2.0.9-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,541 Found link https://files.pythonhosted.org/packages/77/4f/99ea1241115b91a230a2ff434ca7616e683f6fa23a944d1045de08d0b760/rnaglib-2.0.9.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.0.9 2024-07-09T22:14:47,541 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/6c/03/97ba0ec3fb140068cb60b2f2386abcfa489bbd5cc233643d4392133c1d30/rnaglib-2.0.10-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,542 Found link https://files.pythonhosted.org/packages/33/b8/ec74d1d0cf455afb749c8edc2a95136a6bf7236660bb2b29987d5bfbb19e/rnaglib-2.0.10.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.0.10 2024-07-09T22:14:47,543 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/44/22/ed21a8118a98f05c570ff0662baab06d2d2f100acfdbdf0990df88e6de99/rnaglib-2.0.11-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,544 Found link https://files.pythonhosted.org/packages/c0/34/2775413d8daa50cdc29d672667c01144a84527acbdd5e8189af8c97ad47b/rnaglib-2.0.11.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.0.11 2024-07-09T22:14:47,545 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/e9/54/36b9cd225374e2ebf394ea93dd7afb7952c210ff5f071a848af6891941e1/rnaglib-2.0.12-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,545 Found link https://files.pythonhosted.org/packages/e0/a1/3bc3a3e3156fd19dee2af9ae5abc4d4b367e85bc79b3cd64b1ef48b41a51/rnaglib-2.0.12.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.0.12 2024-07-09T22:14:47,546 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/09/21/29f4f9d8c8becbdcafb5ab55e9f41568887a08bda8512201b0ec3335f7b7/rnaglib-2.1.1-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,547 Found link https://files.pythonhosted.org/packages/24/73/3f9e8b80260986e1289d5c54e01b46d0dc22816229e075c2e15ffd97c143/rnaglib-2.1.1.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.1.1 2024-07-09T22:14:47,547 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/15/d0/44de1ecb16c5cd6608f434e5c8b720d3fbc4d3bfe1cc1d6d2d2ae1a8961f/rnaglib-2.2.1-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,548 Found link https://files.pythonhosted.org/packages/a8/1a/de1de7f71fd1086dd3d23c70d477f0a6fbe5bf43a92cfa26dcd5a1f8698c/rnaglib-2.2.1.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.2.1 2024-07-09T22:14:47,549 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/e8/17/7847ff8d5e83fff0c894618b71d2d0558adc836fdd04e258c368f8fcdad9/rnaglib-2.2.2-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,550 Found link https://files.pythonhosted.org/packages/c3/3b/699e9bf08236240428f47844f7a5b72b80fd59a5545e5c41d7e7c3310a66/rnaglib-2.2.2.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.2.2 2024-07-09T22:14:47,550 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/72/d0/aa67c559e92a94450adb983b8c766ff10429e57fe94aae109a1e1bc61699/rnaglib-2.2.3-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,551 Found link https://files.pythonhosted.org/packages/01/49/a960a178ba6b8a4c8c776d7c6d5ebf93a4397e1418a768c31ac07bac253e/rnaglib-2.2.3.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.2.3 2024-07-09T22:14:47,552 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/78/18/d70666e5beeaed8f81c3049a0ee338ae5b9570b54568d99997a58bf79fca/rnaglib-2.2.4-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,553 Found link https://files.pythonhosted.org/packages/48/0d/c2d2c01f64e0d3888ec479ac73f63151cfb2fa8d8c8e8e5289abcc8225d6/rnaglib-2.2.4.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.2.4 2024-07-09T22:14:47,553 Skipping link: No binaries permitted for rnaglib: https://files.pythonhosted.org/packages/a5/9b/8d92cc5dfbba7291c8890a23128a7d20b0a5dbdbb935ff729fa850b18340/rnaglib-2.2.5-py3-none-any.whl (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,554 Found link https://files.pythonhosted.org/packages/5f/71/8fa044bb619e0bc46ba8142ff30080795cb615241433e95f131e349528c9/rnaglib-2.2.5.tar.gz (from https://pypi.org/simple/rnaglib/) (requires-python:>=3.7), version: 2.2.5 2024-07-09T22:14:47,555 Fetching project page and analyzing links: https://www.piwheels.org/simple/rnaglib/ 2024-07-09T22:14:47,556 Getting page https://www.piwheels.org/simple/rnaglib/ 2024-07-09T22:14:47,557 Found index url https://www.piwheels.org/simple/ 2024-07-09T22:14:47,721 Fetched page https://www.piwheels.org/simple/rnaglib/ as text/html 2024-07-09T22:14:47,727 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-2.2.4-py3-none-any.whl#sha256=2d1263331103306c71491952a4f453441badf5a143b24f8bc59ff266d384417f (from https://www.piwheels.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,727 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-2.2.3-py3-none-any.whl#sha256=b0e9646b5c9749212eb4618e842895830929e0583f0c034e911fa0a6b0d190e5 (from https://www.piwheels.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,728 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-2.2.2-py3-none-any.whl#sha256=5ecb94eb072d4095186c4c5e60d5b6242dd88c6e3e11d84dbe05bddf882bd4c9 (from https://www.piwheels.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,728 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-2.2.1-py3-none-any.whl#sha256=37f0e958485596db785bc4388a353408dde8e1b39e9ed1843743b0f5cc274ab9 (from https://www.piwheels.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,729 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-2.1.1-py3-none-any.whl#sha256=bcd94069c0311596fd47bf33b5d7c5afd23f4d5d7ed1a9cb84cffb5c40d718c0 (from https://www.piwheels.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,729 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-2.0.12-py3-none-any.whl#sha256=1abe8d3149608d94d098191e01cba16561b5c146c399b19b79ce75cc9ea36df7 (from https://www.piwheels.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,730 Skipping link: No binaries permitted for rnaglib: 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https://www.piwheels.org/simple/rnaglib/rnaglib-2.0.8-py3-none-any.whl#sha256=666ea4ca832fbb5225f93ef52e9dd98761bb5e8f7353e1b9d2d770c7aaeb82bc (from https://www.piwheels.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,732 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-2.0.7-py3-none-any.whl#sha256=b474ed56cb2763a4455b34034f3309d43e50054b4dd9e96b870072c9ac1f1f17 (from https://www.piwheels.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,732 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-2.0.6-py3-none-any.whl#sha256=f8e2b6853a8467b419e10ed76c56d685b1c0843c4b0a0cce305ba14bc43dacbd (from https://www.piwheels.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,733 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-2.0.4-py3-none-any.whl#sha256=d45a2ecd66fef0e722389a9793e9cbb54c5293dc89bedfc4b263abe9d2647018 (from https://www.piwheels.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,733 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-2.0.3-py3-none-any.whl#sha256=8c5ff31897de6ca54cbd58cfe31bf04474c23d0fb50b119b62200e9c2f65b605 (from https://www.piwheels.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,734 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-2.0.2-py3-none-any.whl#sha256=0200e766f0b13b06d5f898d066818c081ed09e01571d92ed7b4912218787fcf6 (from https://www.piwheels.org/simple/rnaglib/) (requires-python:>=3.7) 2024-07-09T22:14:47,735 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-1.0.1-py3-none-any.whl#sha256=5bd782ad43e7ba033b27aa10741b1aa27caff30ebf3fb145e5963c08abf03ee0 (from https://www.piwheels.org/simple/rnaglib/) 2024-07-09T22:14:47,735 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-1.0.0-py3-none-any.whl#sha256=861b765850bd13bb510b7bcc3ede3c666e18f27e796615e0f01503004ccc96af (from https://www.piwheels.org/simple/rnaglib/) 2024-07-09T22:14:47,736 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-0.0.2-py3-none-any.whl#sha256=c5e80decfdd04be4b6881b2f0cde78d932ef4cf48ded91720de2b1523cc85f89 (from https://www.piwheels.org/simple/rnaglib/) 2024-07-09T22:14:47,736 Skipping link: No binaries permitted for rnaglib: https://www.piwheels.org/simple/rnaglib/rnaglib-0.0.1-py3-none-any.whl#sha256=235f6b82380c2ca6a517fb7049ef71765872fa9024a92f4bca53b1d5af3342a6 (from https://www.piwheels.org/simple/rnaglib/) 2024-07-09T22:14:47,737 Skipping link: not a file: https://www.piwheels.org/simple/rnaglib/ 2024-07-09T22:14:47,737 Skipping link: not a file: https://pypi.org/simple/rnaglib/ 2024-07-09T22:14:47,760 Given no hashes to check 1 links for project 'rnaglib': discarding no candidates 2024-07-09T22:14:47,780 Collecting rnaglib==2.2.5 2024-07-09T22:14:47,782 Created temporary directory: /tmp/pip-unpack-tuf8lrc5 2024-07-09T22:14:47,999 Downloading rnaglib-2.2.5.tar.gz (153 kB) 2024-07-09T22:14:48,331 Added rnaglib==2.2.5 from https://files.pythonhosted.org/packages/5f/71/8fa044bb619e0bc46ba8142ff30080795cb615241433e95f131e349528c9/rnaglib-2.2.5.tar.gz to build tracker '/tmp/pip-build-tracker-wgc5s9be' 2024-07-09T22:14:48,336 Created temporary directory: /tmp/pip-build-env-vwche2hg 2024-07-09T22:14:48,340 Installing build dependencies: started 2024-07-09T22:14:48,342 Running command pip subprocess to install build dependencies 2024-07-09T22:14:49,511 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-07-09T22:14:50,046 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-09T22:14:51,541 Collecting setuptools>=40.8.0 2024-07-09T22:14:51,556 Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.3.0-py3-none-any.whl (931 kB) 2024-07-09T22:14:54,197 Installing collected packages: setuptools 2024-07-09T22:14:56,784 Successfully installed setuptools-70.3.0 2024-07-09T22:14:57,136 [notice] A new release of pip is available: 24.0 -> 24.1.2 2024-07-09T22:14:57,137 [notice] To update, run: python3 -m pip install --upgrade pip 2024-07-09T22:14:57,400 Installing build dependencies: finished with status 'done' 2024-07-09T22:14:57,404 Getting requirements to build wheel: started 2024-07-09T22:14:57,405 Running command Getting requirements to build wheel 2024-07-09T22:14:58,243 running egg_info 2024-07-09T22:14:58,247 writing src/rnaglib.egg-info/PKG-INFO 2024-07-09T22:14:58,251 writing dependency_links to src/rnaglib.egg-info/dependency_links.txt 2024-07-09T22:14:58,253 writing entry points to src/rnaglib.egg-info/entry_points.txt 2024-07-09T22:14:58,255 writing requirements to src/rnaglib.egg-info/requires.txt 2024-07-09T22:14:58,256 writing top-level names to src/rnaglib.egg-info/top_level.txt 2024-07-09T22:14:58,297 reading manifest file 'src/rnaglib.egg-info/SOURCES.txt' 2024-07-09T22:14:58,302 adding license file 'LICENSE' 2024-07-09T22:14:58,308 writing manifest file 'src/rnaglib.egg-info/SOURCES.txt' 2024-07-09T22:14:58,426 Getting requirements to build wheel: finished with status 'done' 2024-07-09T22:14:58,430 Created temporary directory: /tmp/pip-modern-metadata-rqkhv6lg 2024-07-09T22:14:58,432 Preparing metadata (pyproject.toml): started 2024-07-09T22:14:58,433 Running command Preparing metadata (pyproject.toml) 2024-07-09T22:14:59,199 running dist_info 2024-07-09T22:14:59,204 creating /tmp/pip-modern-metadata-rqkhv6lg/rnaglib.egg-info 2024-07-09T22:14:59,207 writing /tmp/pip-modern-metadata-rqkhv6lg/rnaglib.egg-info/PKG-INFO 2024-07-09T22:14:59,211 writing dependency_links to /tmp/pip-modern-metadata-rqkhv6lg/rnaglib.egg-info/dependency_links.txt 2024-07-09T22:14:59,213 writing entry points to /tmp/pip-modern-metadata-rqkhv6lg/rnaglib.egg-info/entry_points.txt 2024-07-09T22:14:59,214 writing requirements to /tmp/pip-modern-metadata-rqkhv6lg/rnaglib.egg-info/requires.txt 2024-07-09T22:14:59,216 writing top-level names to /tmp/pip-modern-metadata-rqkhv6lg/rnaglib.egg-info/top_level.txt 2024-07-09T22:14:59,217 writing manifest file '/tmp/pip-modern-metadata-rqkhv6lg/rnaglib.egg-info/SOURCES.txt' 2024-07-09T22:14:59,251 reading manifest file '/tmp/pip-modern-metadata-rqkhv6lg/rnaglib.egg-info/SOURCES.txt' 2024-07-09T22:14:59,253 adding license file 'LICENSE' 2024-07-09T22:14:59,258 writing manifest file '/tmp/pip-modern-metadata-rqkhv6lg/rnaglib.egg-info/SOURCES.txt' 2024-07-09T22:14:59,260 creating '/tmp/pip-modern-metadata-rqkhv6lg/rnaglib-2.2.5.dist-info' 2024-07-09T22:14:59,406 Preparing metadata (pyproject.toml): finished with status 'done' 2024-07-09T22:14:59,411 Source in /tmp/pip-wheel-u7xee8jr/rnaglib_b6cb7d9f3270424ea9b711e6fa7ab3c1 has version 2.2.5, which satisfies requirement rnaglib==2.2.5 from https://files.pythonhosted.org/packages/5f/71/8fa044bb619e0bc46ba8142ff30080795cb615241433e95f131e349528c9/rnaglib-2.2.5.tar.gz 2024-07-09T22:14:59,412 Removed rnaglib==2.2.5 from https://files.pythonhosted.org/packages/5f/71/8fa044bb619e0bc46ba8142ff30080795cb615241433e95f131e349528c9/rnaglib-2.2.5.tar.gz from build tracker '/tmp/pip-build-tracker-wgc5s9be' 2024-07-09T22:14:59,417 Created temporary directory: /tmp/pip-unpack-t93x7cuo 2024-07-09T22:14:59,418 Created temporary directory: /tmp/pip-unpack-y4pk2v3g 2024-07-09T22:14:59,430 Building wheels for collected packages: rnaglib 2024-07-09T22:14:59,434 Created temporary directory: /tmp/pip-wheel-90q01wpi 2024-07-09T22:14:59,434 Destination directory: /tmp/pip-wheel-90q01wpi 2024-07-09T22:14:59,437 Building wheel for rnaglib (pyproject.toml): started 2024-07-09T22:14:59,438 Running command Building wheel for rnaglib (pyproject.toml) 2024-07-09T22:15:00,210 running bdist_wheel 2024-07-09T22:15:00,224 running build 2024-07-09T22:15:00,225 running build_py 2024-07-09T22:15:00,228 creating build 2024-07-09T22:15:00,229 creating build/lib 2024-07-09T22:15:00,230 creating build/lib/rnaglib 2024-07-09T22:15:00,231 copying src/rnaglib/__init__.py -> build/lib/rnaglib 2024-07-09T22:15:00,233 creating build/lib/rnaglib/learning 2024-07-09T22:15:00,234 copying src/rnaglib/learning/learning_utils.py -> build/lib/rnaglib/learning 2024-07-09T22:15:00,237 copying src/rnaglib/learning/models.py -> build/lib/rnaglib/learning 2024-07-09T22:15:00,239 copying src/rnaglib/learning/task_models.py -> build/lib/rnaglib/learning 2024-07-09T22:15:00,241 copying src/rnaglib/learning/__init__.py -> build/lib/rnaglib/learning 2024-07-09T22:15:00,242 copying src/rnaglib/learning/learn.py -> build/lib/rnaglib/learning 2024-07-09T22:15:00,245 creating build/lib/rnaglib/utils 2024-07-09T22:15:00,246 copying src/rnaglib/utils/graph_utils.py -> build/lib/rnaglib/utils 2024-07-09T22:15:00,249 copying src/rnaglib/utils/graphlet_hash.py -> build/lib/rnaglib/utils 2024-07-09T22:15:00,251 copying src/rnaglib/utils/feature_maps.py -> build/lib/rnaglib/utils 2024-07-09T22:15:00,253 copying src/rnaglib/utils/graph_io.py -> build/lib/rnaglib/utils 2024-07-09T22:15:00,256 copying src/rnaglib/utils/__init__.py -> build/lib/rnaglib/utils 2024-07-09T22:15:00,257 copying src/rnaglib/utils/task_utils.py -> build/lib/rnaglib/utils 2024-07-09T22:15:00,259 copying src/rnaglib/utils/misc.py -> build/lib/rnaglib/utils 2024-07-09T22:15:00,261 creating build/lib/rnaglib/tasks 2024-07-09T22:15:00,262 copying src/rnaglib/tasks/benchmark_binding_site.py -> build/lib/rnaglib/tasks 2024-07-09T22:15:00,265 copying src/rnaglib/tasks/task.py -> build/lib/rnaglib/tasks 2024-07-09T22:15:00,267 copying src/rnaglib/tasks/__init__.py -> build/lib/rnaglib/tasks 2024-07-09T22:15:00,269 creating build/lib/rnaglib/examples 2024-07-09T22:15:00,270 copying src/rnaglib/examples/rnaglib_first.py -> build/lib/rnaglib/examples 2024-07-09T22:15:00,271 copying src/rnaglib/examples/__init__.py -> build/lib/rnaglib/examples 2024-07-09T22:15:00,273 copying src/rnaglib/examples/third_example.py -> build/lib/rnaglib/examples 2024-07-09T22:15:00,275 creating build/lib/rnaglib/bin 2024-07-09T22:15:00,276 copying src/rnaglib/bin/rnaglib_tokenize.py -> build/lib/rnaglib/bin 2024-07-09T22:15:00,278 copying src/rnaglib/bin/__init__.py -> build/lib/rnaglib/bin 2024-07-09T22:15:00,279 copying src/rnaglib/bin/rnaglib_download.py -> build/lib/rnaglib/bin 2024-07-09T22:15:00,281 copying src/rnaglib/bin/rnaglib_prepare_data.py -> build/lib/rnaglib/bin 2024-07-09T22:15:00,282 copying src/rnaglib/bin/rnaglib_index.py -> build/lib/rnaglib/bin 2024-07-09T22:15:00,285 creating build/lib/rnaglib/drawing 2024-07-09T22:15:00,285 copying src/rnaglib/drawing/rna_layout.py -> build/lib/rnaglib/drawing 2024-07-09T22:15:00,287 copying src/rnaglib/drawing/__init__.py -> build/lib/rnaglib/drawing 2024-07-09T22:15:00,289 copying src/rnaglib/drawing/rna_draw.py -> build/lib/rnaglib/drawing 2024-07-09T22:15:00,291 creating build/lib/rnaglib/data 2024-07-09T22:15:00,292 copying src/rnaglib/data/__init__.py -> build/lib/rnaglib/data 2024-07-09T22:15:00,294 creating build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,295 copying src/rnaglib/prepare_data/chopper.py -> build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,297 copying src/rnaglib/prepare_data/hash_check.py -> build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,299 copying src/rnaglib/prepare_data/annotations.py -> build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,301 copying src/rnaglib/prepare_data/filters.py -> build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,303 copying src/rnaglib/prepare_data/__init__.py -> build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,305 copying src/rnaglib/prepare_data/test.py -> build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,306 copying src/rnaglib/prepare_data/retrieve_structures.py -> build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,308 copying src/rnaglib/prepare_data/khop_annotate.py -> build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,310 copying src/rnaglib/prepare_data/fr3d_2_graphs.py -> build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,313 copying src/rnaglib/prepare_data/dssr_2_graphs.py -> build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,315 copying src/rnaglib/prepare_data/main.py -> build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,317 copying src/rnaglib/prepare_data/describe_datasets.py -> build/lib/rnaglib/prepare_data 2024-07-09T22:15:00,319 creating build/lib/rnaglib/splitters 2024-07-09T22:15:00,320 copying src/rnaglib/splitters/splitters.py -> build/lib/rnaglib/splitters 2024-07-09T22:15:00,322 copying src/rnaglib/splitters/__init__.py -> build/lib/rnaglib/splitters 2024-07-09T22:15:00,324 copying src/rnaglib/splitters/splitting_utils.py -> build/lib/rnaglib/splitters 2024-07-09T22:15:00,327 creating build/lib/rnaglib/config 2024-07-09T22:15:00,327 copying src/rnaglib/config/graph_keys.py -> build/lib/rnaglib/config 2024-07-09T22:15:00,329 copying src/rnaglib/config/ligands.py -> build/lib/rnaglib/config 2024-07-09T22:15:00,331 copying src/rnaglib/config/__init__.py -> build/lib/rnaglib/config 2024-07-09T22:15:00,333 copying src/rnaglib/config/build_iso_mat.py -> build/lib/rnaglib/config 2024-07-09T22:15:00,335 creating build/lib/rnaglib/data_loading 2024-07-09T22:15:00,336 copying src/rnaglib/data_loading/rna_dataset.py -> build/lib/rnaglib/data_loading 2024-07-09T22:15:00,338 copying src/rnaglib/data_loading/__init__.py -> build/lib/rnaglib/data_loading 2024-07-09T22:15:00,339 copying src/rnaglib/data_loading/test.py -> build/lib/rnaglib/data_loading 2024-07-09T22:15:00,341 copying src/rnaglib/data_loading/splitting.py -> build/lib/rnaglib/data_loading 2024-07-09T22:15:00,343 copying src/rnaglib/data_loading/rna_loader.py -> build/lib/rnaglib/data_loading 2024-07-09T22:15:00,345 copying src/rnaglib/data_loading/get_statistics.py -> build/lib/rnaglib/data_loading 2024-07-09T22:15:00,348 creating build/lib/rnaglib/ged 2024-07-09T22:15:00,349 copying src/rnaglib/ged/__init__.py -> build/lib/rnaglib/ged 2024-07-09T22:15:00,350 copying src/rnaglib/ged/ged_nx.py -> build/lib/rnaglib/ged 2024-07-09T22:15:00,353 copying src/rnaglib/ged/rna_ged_nx.py -> build/lib/rnaglib/ged 2024-07-09T22:15:00,356 creating build/lib/rnaglib/representations 2024-07-09T22:15:00,356 copying src/rnaglib/representations/graph.py -> build/lib/rnaglib/representations 2024-07-09T22:15:00,358 copying src/rnaglib/representations/rings.py -> build/lib/rnaglib/representations 2024-07-09T22:15:00,360 copying src/rnaglib/representations/voxel.py -> build/lib/rnaglib/representations 2024-07-09T22:15:00,362 copying src/rnaglib/representations/__init__.py -> build/lib/rnaglib/representations 2024-07-09T22:15:00,364 copying src/rnaglib/representations/point_cloud.py -> build/lib/rnaglib/representations 2024-07-09T22:15:00,365 copying src/rnaglib/representations/representation.py -> build/lib/rnaglib/representations 2024-07-09T22:15:00,367 creating build/lib/rnaglib/kernels 2024-07-09T22:15:00,368 copying src/rnaglib/kernels/node_sim.py -> build/lib/rnaglib/kernels 2024-07-09T22:15:00,371 copying src/rnaglib/kernels/__init__.py -> build/lib/rnaglib/kernels 2024-07-09T22:15:00,373 creating build/lib/rnaglib/tasks/RNA_Ligand 2024-07-09T22:15:00,374 copying src/rnaglib/tasks/RNA_Ligand/demo.py -> build/lib/rnaglib/tasks/RNA_Ligand 2024-07-09T22:15:00,376 copying src/rnaglib/tasks/RNA_Ligand/__init__.py -> build/lib/rnaglib/tasks/RNA_Ligand 2024-07-09T22:15:00,377 copying src/rnaglib/tasks/RNA_Ligand/ligand_identity.py -> build/lib/rnaglib/tasks/RNA_Ligand 2024-07-09T22:15:00,380 creating build/lib/rnaglib/tasks/RNA_Site 2024-07-09T22:15:00,381 copying src/rnaglib/tasks/RNA_Site/benchmark_binding_site.py -> build/lib/rnaglib/tasks/RNA_Site 2024-07-09T22:15:00,382 copying src/rnaglib/tasks/RNA_Site/binding_site.py -> build/lib/rnaglib/tasks/RNA_Site 2024-07-09T22:15:00,384 copying src/rnaglib/tasks/RNA_Site/benchmark_demo.py -> build/lib/rnaglib/tasks/RNA_Site 2024-07-09T22:15:00,386 copying src/rnaglib/tasks/RNA_Site/demo.py -> build/lib/rnaglib/tasks/RNA_Site 2024-07-09T22:15:00,389 copying src/rnaglib/tasks/RNA_Site/__init__.py -> build/lib/rnaglib/tasks/RNA_Site 2024-07-09T22:15:00,391 creating build/lib/rnaglib/tasks/RBP_Node 2024-07-09T22:15:00,392 copying src/rnaglib/tasks/RBP_Node/demo.py -> build/lib/rnaglib/tasks/RBP_Node 2024-07-09T22:15:00,394 copying src/rnaglib/tasks/RBP_Node/__init__.py -> build/lib/rnaglib/tasks/RBP_Node 2024-07-09T22:15:00,395 copying src/rnaglib/tasks/RBP_Node/protein_binding_site.py -> build/lib/rnaglib/tasks/RBP_Node 2024-07-09T22:15:00,398 creating build/lib/rnaglib/tasks/depr 2024-07-09T22:15:00,399 copying src/rnaglib/tasks/depr/binding_site.py -> build/lib/rnaglib/tasks/depr 2024-07-09T22:15:00,401 copying src/rnaglib/tasks/depr/inverse_folding.py -> build/lib/rnaglib/tasks/depr 2024-07-09T22:15:00,403 copying src/rnaglib/tasks/depr/IF_gRNAde_model.py -> build/lib/rnaglib/tasks/depr 2024-07-09T22:15:00,406 creating build/lib/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,407 copying src/rnaglib/tasks/RNA_VS/ligands.py -> build/lib/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,409 copying src/rnaglib/tasks/RNA_VS/build_data.py -> build/lib/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,411 copying src/rnaglib/tasks/RNA_VS/task.py -> build/lib/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,413 copying src/rnaglib/tasks/RNA_VS/data.py -> build/lib/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,415 copying src/rnaglib/tasks/RNA_VS/demo.py -> build/lib/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,417 copying src/rnaglib/tasks/RNA_VS/evaluate.py -> build/lib/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,418 copying src/rnaglib/tasks/RNA_VS/__init__.py -> build/lib/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,420 copying src/rnaglib/tasks/RNA_VS/model.py -> build/lib/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,422 creating build/lib/rnaglib/tasks/experiments 2024-07-09T22:15:00,423 copying src/rnaglib/tasks/experiments/benchmark_binding_site_model_embeddings.py -> build/lib/rnaglib/tasks/experiments 2024-07-09T22:15:00,425 copying src/rnaglib/tasks/experiments/benchmark_chemical_modification_model.py -> build/lib/rnaglib/tasks/experiments 2024-07-09T22:15:00,428 copying src/rnaglib/tasks/experiments/benchmark_protein_site_model_embeddings.py -> build/lib/rnaglib/tasks/experiments 2024-07-09T22:15:00,430 copying src/rnaglib/tasks/experiments/benchmark_protein_site_model.py -> build/lib/rnaglib/tasks/experiments 2024-07-09T22:15:00,432 copying src/rnaglib/tasks/experiments/benchmark_chemical_modification_model_embeddings.py -> build/lib/rnaglib/tasks/experiments 2024-07-09T22:15:00,434 copying src/rnaglib/tasks/experiments/benchmark_binding_site_model.py -> build/lib/rnaglib/tasks/experiments 2024-07-09T22:15:00,437 creating build/lib/rnaglib/tasks/RNA_IF 2024-07-09T22:15:00,438 copying src/rnaglib/tasks/RNA_IF/benchmark_demo.py -> build/lib/rnaglib/tasks/RNA_IF 2024-07-09T22:15:00,440 copying src/rnaglib/tasks/RNA_IF/demo.py -> build/lib/rnaglib/tasks/RNA_IF 2024-07-09T22:15:00,442 copying src/rnaglib/tasks/RNA_IF/__init__.py -> build/lib/rnaglib/tasks/RNA_IF 2024-07-09T22:15:00,443 copying src/rnaglib/tasks/RNA_IF/inverse_folding.py -> build/lib/rnaglib/tasks/RNA_IF 2024-07-09T22:15:00,445 copying src/rnaglib/tasks/RNA_IF/gRNAde.py -> build/lib/rnaglib/tasks/RNA_IF 2024-07-09T22:15:00,447 creating build/lib/rnaglib/tasks/models 2024-07-09T22:15:00,448 copying src/rnaglib/tasks/models/binding_site_model.py -> build/lib/rnaglib/tasks/models 2024-07-09T22:15:00,451 copying src/rnaglib/tasks/models/chemical_modification_model.py -> build/lib/rnaglib/tasks/models 2024-07-09T22:15:00,453 copying src/rnaglib/tasks/models/protein_binding_site_model.py -> build/lib/rnaglib/tasks/models 2024-07-09T22:15:00,455 copying src/rnaglib/tasks/models/benchmark_binding_site_model.py -> build/lib/rnaglib/tasks/models 2024-07-09T22:15:00,458 creating build/lib/rnaglib/tasks/RNA_CM 2024-07-09T22:15:00,459 copying src/rnaglib/tasks/RNA_CM/chemical_modification.py -> build/lib/rnaglib/tasks/RNA_CM 2024-07-09T22:15:00,460 copying src/rnaglib/tasks/RNA_CM/demo.py -> build/lib/rnaglib/tasks/RNA_CM 2024-07-09T22:15:00,462 copying src/rnaglib/tasks/RNA_CM/__init__.py -> build/lib/rnaglib/tasks/RNA_CM 2024-07-09T22:15:00,464 creating build/lib/rnaglib/tasks/RBP_Graph 2024-07-09T22:15:00,465 copying src/rnaglib/tasks/RBP_Graph/demo.py -> build/lib/rnaglib/tasks/RBP_Graph 2024-07-09T22:15:00,468 copying src/rnaglib/tasks/RBP_Graph/__init__.py -> build/lib/rnaglib/tasks/RBP_Graph 2024-07-09T22:15:00,469 copying src/rnaglib/tasks/RBP_Graph/protein_binding.py -> build/lib/rnaglib/tasks/RBP_Graph 2024-07-09T22:15:00,471 creating build/lib/rnaglib/tasks/RNA_IF/data 2024-07-09T22:15:00,472 copying src/rnaglib/tasks/RNA_IF/data/downloader.py -> build/lib/rnaglib/tasks/RNA_IF/data 2024-07-09T22:15:00,475 creating build/lib/rnaglib/prepare_data/tests 2024-07-09T22:15:00,476 copying src/rnaglib/prepare_data/tests/clean_graphs.py -> build/lib/rnaglib/prepare_data/tests 2024-07-09T22:15:00,477 copying src/rnaglib/prepare_data/tests/is_dna.py -> build/lib/rnaglib/prepare_data/tests 2024-07-09T22:15:00,479 copying src/rnaglib/prepare_data/tests/interfaces.py -> build/lib/rnaglib/prepare_data/tests 2024-07-09T22:15:00,481 copying src/rnaglib/prepare_data/tests/subset_graphs.py -> build/lib/rnaglib/prepare_data/tests 2024-07-09T22:15:00,483 running egg_info 2024-07-09T22:15:00,486 writing src/rnaglib.egg-info/PKG-INFO 2024-07-09T22:15:00,489 writing dependency_links to src/rnaglib.egg-info/dependency_links.txt 2024-07-09T22:15:00,491 writing entry points to src/rnaglib.egg-info/entry_points.txt 2024-07-09T22:15:00,492 writing requirements to src/rnaglib.egg-info/requires.txt 2024-07-09T22:15:00,493 writing top-level names to src/rnaglib.egg-info/top_level.txt 2024-07-09T22:15:00,520 reading manifest file 'src/rnaglib.egg-info/SOURCES.txt' 2024-07-09T22:15:00,524 adding license file 'LICENSE' 2024-07-09T22:15:00,531 writing manifest file 'src/rnaglib.egg-info/SOURCES.txt' 2024-07-09T22:15:00,544 copying src/rnaglib/data_loading/graph_index_NR.json -> build/lib/rnaglib/data_loading 2024-07-09T22:15:00,548 copying src/rnaglib/config/rna_smiles.txt -> build/lib/rnaglib/config 2024-07-09T22:15:00,568 installing to build/bdist.linux-armv7l/wheel 2024-07-09T22:15:00,568 running install 2024-07-09T22:15:00,592 running install_lib 2024-07-09T22:15:00,596 creating build/bdist.linux-armv7l 2024-07-09T22:15:00,597 creating build/bdist.linux-armv7l/wheel 2024-07-09T22:15:00,598 creating build/bdist.linux-armv7l/wheel/rnaglib 2024-07-09T22:15:00,600 creating build/bdist.linux-armv7l/wheel/rnaglib/learning 2024-07-09T22:15:00,601 copying build/lib/rnaglib/learning/learning_utils.py -> build/bdist.linux-armv7l/wheel/rnaglib/learning 2024-07-09T22:15:00,604 copying build/lib/rnaglib/learning/models.py -> build/bdist.linux-armv7l/wheel/rnaglib/learning 2024-07-09T22:15:00,606 copying build/lib/rnaglib/learning/task_models.py -> build/bdist.linux-armv7l/wheel/rnaglib/learning 2024-07-09T22:15:00,608 copying build/lib/rnaglib/learning/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/learning 2024-07-09T22:15:00,609 copying build/lib/rnaglib/learning/learn.py -> build/bdist.linux-armv7l/wheel/rnaglib/learning 2024-07-09T22:15:00,612 creating build/bdist.linux-armv7l/wheel/rnaglib/utils 2024-07-09T22:15:00,613 copying build/lib/rnaglib/utils/graph_utils.py -> build/bdist.linux-armv7l/wheel/rnaglib/utils 2024-07-09T22:15:00,616 copying build/lib/rnaglib/utils/graphlet_hash.py -> build/bdist.linux-armv7l/wheel/rnaglib/utils 2024-07-09T22:15:00,618 copying build/lib/rnaglib/utils/feature_maps.py -> build/bdist.linux-armv7l/wheel/rnaglib/utils 2024-07-09T22:15:00,620 copying build/lib/rnaglib/utils/graph_io.py -> build/bdist.linux-armv7l/wheel/rnaglib/utils 2024-07-09T22:15:00,623 copying build/lib/rnaglib/utils/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/utils 2024-07-09T22:15:00,625 copying build/lib/rnaglib/utils/task_utils.py -> build/bdist.linux-armv7l/wheel/rnaglib/utils 2024-07-09T22:15:00,626 copying build/lib/rnaglib/utils/misc.py -> build/bdist.linux-armv7l/wheel/rnaglib/utils 2024-07-09T22:15:00,628 creating build/bdist.linux-armv7l/wheel/rnaglib/tasks 2024-07-09T22:15:00,629 copying build/lib/rnaglib/tasks/benchmark_binding_site.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks 2024-07-09T22:15:00,633 creating build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_Ligand 2024-07-09T22:15:00,634 copying build/lib/rnaglib/tasks/RNA_Ligand/demo.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_Ligand 2024-07-09T22:15:00,636 copying build/lib/rnaglib/tasks/RNA_Ligand/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_Ligand 2024-07-09T22:15:00,637 copying build/lib/rnaglib/tasks/RNA_Ligand/ligand_identity.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_Ligand 2024-07-09T22:15:00,640 creating build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_Site 2024-07-09T22:15:00,641 copying build/lib/rnaglib/tasks/RNA_Site/benchmark_binding_site.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_Site 2024-07-09T22:15:00,643 copying build/lib/rnaglib/tasks/RNA_Site/binding_site.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_Site 2024-07-09T22:15:00,644 copying build/lib/rnaglib/tasks/RNA_Site/benchmark_demo.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_Site 2024-07-09T22:15:00,646 copying build/lib/rnaglib/tasks/RNA_Site/demo.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_Site 2024-07-09T22:15:00,649 copying build/lib/rnaglib/tasks/RNA_Site/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_Site 2024-07-09T22:15:00,650 copying build/lib/rnaglib/tasks/task.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks 2024-07-09T22:15:00,653 creating build/bdist.linux-armv7l/wheel/rnaglib/tasks/RBP_Node 2024-07-09T22:15:00,654 copying build/lib/rnaglib/tasks/RBP_Node/demo.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RBP_Node 2024-07-09T22:15:00,656 copying build/lib/rnaglib/tasks/RBP_Node/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RBP_Node 2024-07-09T22:15:00,657 copying build/lib/rnaglib/tasks/RBP_Node/protein_binding_site.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RBP_Node 2024-07-09T22:15:00,659 copying build/lib/rnaglib/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks 2024-07-09T22:15:00,661 creating build/bdist.linux-armv7l/wheel/rnaglib/tasks/depr 2024-07-09T22:15:00,662 copying build/lib/rnaglib/tasks/depr/binding_site.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/depr 2024-07-09T22:15:00,664 copying build/lib/rnaglib/tasks/depr/inverse_folding.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/depr 2024-07-09T22:15:00,666 copying build/lib/rnaglib/tasks/depr/IF_gRNAde_model.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/depr 2024-07-09T22:15:00,669 creating build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,670 copying build/lib/rnaglib/tasks/RNA_VS/ligands.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,672 copying build/lib/rnaglib/tasks/RNA_VS/build_data.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,674 copying build/lib/rnaglib/tasks/RNA_VS/task.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,676 copying build/lib/rnaglib/tasks/RNA_VS/data.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,678 copying build/lib/rnaglib/tasks/RNA_VS/demo.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,680 copying build/lib/rnaglib/tasks/RNA_VS/evaluate.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,682 copying build/lib/rnaglib/tasks/RNA_VS/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,683 copying build/lib/rnaglib/tasks/RNA_VS/model.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_VS 2024-07-09T22:15:00,686 creating build/bdist.linux-armv7l/wheel/rnaglib/tasks/experiments 2024-07-09T22:15:00,687 copying build/lib/rnaglib/tasks/experiments/benchmark_binding_site_model_embeddings.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/experiments 2024-07-09T22:15:00,690 copying build/lib/rnaglib/tasks/experiments/benchmark_chemical_modification_model.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/experiments 2024-07-09T22:15:00,692 copying build/lib/rnaglib/tasks/experiments/benchmark_protein_site_model_embeddings.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/experiments 2024-07-09T22:15:00,694 copying build/lib/rnaglib/tasks/experiments/benchmark_protein_site_model.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/experiments 2024-07-09T22:15:00,696 copying build/lib/rnaglib/tasks/experiments/benchmark_chemical_modification_model_embeddings.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/experiments 2024-07-09T22:15:00,698 copying build/lib/rnaglib/tasks/experiments/benchmark_binding_site_model.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/experiments 2024-07-09T22:15:00,701 creating build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_IF 2024-07-09T22:15:00,702 copying build/lib/rnaglib/tasks/RNA_IF/benchmark_demo.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_IF 2024-07-09T22:15:00,704 copying build/lib/rnaglib/tasks/RNA_IF/demo.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_IF 2024-07-09T22:15:00,706 copying build/lib/rnaglib/tasks/RNA_IF/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_IF 2024-07-09T22:15:00,708 copying build/lib/rnaglib/tasks/RNA_IF/inverse_folding.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_IF 2024-07-09T22:15:00,710 creating build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_IF/data 2024-07-09T22:15:00,711 copying build/lib/rnaglib/tasks/RNA_IF/data/downloader.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_IF/data 2024-07-09T22:15:00,712 copying build/lib/rnaglib/tasks/RNA_IF/gRNAde.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_IF 2024-07-09T22:15:00,714 creating build/bdist.linux-armv7l/wheel/rnaglib/tasks/models 2024-07-09T22:15:00,715 copying build/lib/rnaglib/tasks/models/binding_site_model.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/models 2024-07-09T22:15:00,718 copying build/lib/rnaglib/tasks/models/chemical_modification_model.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/models 2024-07-09T22:15:00,720 copying build/lib/rnaglib/tasks/models/protein_binding_site_model.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/models 2024-07-09T22:15:00,722 copying build/lib/rnaglib/tasks/models/benchmark_binding_site_model.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/models 2024-07-09T22:15:00,725 creating build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_CM 2024-07-09T22:15:00,726 copying build/lib/rnaglib/tasks/RNA_CM/chemical_modification.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_CM 2024-07-09T22:15:00,728 copying build/lib/rnaglib/tasks/RNA_CM/demo.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_CM 2024-07-09T22:15:00,730 copying build/lib/rnaglib/tasks/RNA_CM/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RNA_CM 2024-07-09T22:15:00,732 creating build/bdist.linux-armv7l/wheel/rnaglib/tasks/RBP_Graph 2024-07-09T22:15:00,733 copying build/lib/rnaglib/tasks/RBP_Graph/demo.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RBP_Graph 2024-07-09T22:15:00,735 copying build/lib/rnaglib/tasks/RBP_Graph/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RBP_Graph 2024-07-09T22:15:00,737 copying build/lib/rnaglib/tasks/RBP_Graph/protein_binding.py -> build/bdist.linux-armv7l/wheel/rnaglib/tasks/RBP_Graph 2024-07-09T22:15:00,739 creating build/bdist.linux-armv7l/wheel/rnaglib/examples 2024-07-09T22:15:00,740 copying build/lib/rnaglib/examples/rnaglib_first.py -> build/bdist.linux-armv7l/wheel/rnaglib/examples 2024-07-09T22:15:00,742 copying build/lib/rnaglib/examples/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/examples 2024-07-09T22:15:00,744 copying build/lib/rnaglib/examples/third_example.py -> build/bdist.linux-armv7l/wheel/rnaglib/examples 2024-07-09T22:15:00,746 creating build/bdist.linux-armv7l/wheel/rnaglib/bin 2024-07-09T22:15:00,747 copying build/lib/rnaglib/bin/rnaglib_tokenize.py -> build/bdist.linux-armv7l/wheel/rnaglib/bin 2024-07-09T22:15:00,749 copying build/lib/rnaglib/bin/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/bin 2024-07-09T22:15:00,750 copying build/lib/rnaglib/bin/rnaglib_download.py -> build/bdist.linux-armv7l/wheel/rnaglib/bin 2024-07-09T22:15:00,752 copying build/lib/rnaglib/bin/rnaglib_prepare_data.py -> build/bdist.linux-armv7l/wheel/rnaglib/bin 2024-07-09T22:15:00,754 copying build/lib/rnaglib/bin/rnaglib_index.py -> build/bdist.linux-armv7l/wheel/rnaglib/bin 2024-07-09T22:15:00,756 creating build/bdist.linux-armv7l/wheel/rnaglib/drawing 2024-07-09T22:15:00,757 copying build/lib/rnaglib/drawing/rna_layout.py -> build/bdist.linux-armv7l/wheel/rnaglib/drawing 2024-07-09T22:15:00,759 copying build/lib/rnaglib/drawing/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/drawing 2024-07-09T22:15:00,761 copying build/lib/rnaglib/drawing/rna_draw.py -> build/bdist.linux-armv7l/wheel/rnaglib/drawing 2024-07-09T22:15:00,763 copying build/lib/rnaglib/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib 2024-07-09T22:15:00,765 creating build/bdist.linux-armv7l/wheel/rnaglib/data 2024-07-09T22:15:00,766 copying build/lib/rnaglib/data/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/data 2024-07-09T22:15:00,768 creating build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,769 copying build/lib/rnaglib/prepare_data/chopper.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,771 copying build/lib/rnaglib/prepare_data/hash_check.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,773 copying build/lib/rnaglib/prepare_data/annotations.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,775 copying build/lib/rnaglib/prepare_data/filters.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,777 copying build/lib/rnaglib/prepare_data/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,779 creating build/bdist.linux-armv7l/wheel/rnaglib/prepare_data/tests 2024-07-09T22:15:00,780 copying build/lib/rnaglib/prepare_data/tests/clean_graphs.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data/tests 2024-07-09T22:15:00,781 copying build/lib/rnaglib/prepare_data/tests/is_dna.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data/tests 2024-07-09T22:15:00,783 copying build/lib/rnaglib/prepare_data/tests/interfaces.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data/tests 2024-07-09T22:15:00,785 copying build/lib/rnaglib/prepare_data/tests/subset_graphs.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data/tests 2024-07-09T22:15:00,787 copying build/lib/rnaglib/prepare_data/test.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,788 copying build/lib/rnaglib/prepare_data/retrieve_structures.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,790 copying build/lib/rnaglib/prepare_data/khop_annotate.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,793 copying build/lib/rnaglib/prepare_data/fr3d_2_graphs.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,795 copying build/lib/rnaglib/prepare_data/dssr_2_graphs.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,797 copying build/lib/rnaglib/prepare_data/main.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,800 copying build/lib/rnaglib/prepare_data/describe_datasets.py -> build/bdist.linux-armv7l/wheel/rnaglib/prepare_data 2024-07-09T22:15:00,802 creating build/bdist.linux-armv7l/wheel/rnaglib/splitters 2024-07-09T22:15:00,803 copying build/lib/rnaglib/splitters/splitters.py -> build/bdist.linux-armv7l/wheel/rnaglib/splitters 2024-07-09T22:15:00,805 copying build/lib/rnaglib/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/splitters 2024-07-09T22:15:00,807 copying build/lib/rnaglib/splitters/splitting_utils.py -> build/bdist.linux-armv7l/wheel/rnaglib/splitters 2024-07-09T22:15:00,809 creating build/bdist.linux-armv7l/wheel/rnaglib/config 2024-07-09T22:15:00,810 copying build/lib/rnaglib/config/graph_keys.py -> build/bdist.linux-armv7l/wheel/rnaglib/config 2024-07-09T22:15:00,812 copying build/lib/rnaglib/config/ligands.py -> build/bdist.linux-armv7l/wheel/rnaglib/config 2024-07-09T22:15:00,814 copying build/lib/rnaglib/config/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/config 2024-07-09T22:15:00,816 copying build/lib/rnaglib/config/rna_smiles.txt -> build/bdist.linux-armv7l/wheel/rnaglib/config 2024-07-09T22:15:00,819 copying build/lib/rnaglib/config/build_iso_mat.py -> build/bdist.linux-armv7l/wheel/rnaglib/config 2024-07-09T22:15:00,821 creating build/bdist.linux-armv7l/wheel/rnaglib/data_loading 2024-07-09T22:15:00,822 copying build/lib/rnaglib/data_loading/graph_index_NR.json -> build/bdist.linux-armv7l/wheel/rnaglib/data_loading 2024-07-09T22:15:00,826 copying build/lib/rnaglib/data_loading/rna_dataset.py -> build/bdist.linux-armv7l/wheel/rnaglib/data_loading 2024-07-09T22:15:00,828 copying build/lib/rnaglib/data_loading/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/data_loading 2024-07-09T22:15:00,830 copying build/lib/rnaglib/data_loading/test.py -> build/bdist.linux-armv7l/wheel/rnaglib/data_loading 2024-07-09T22:15:00,832 copying build/lib/rnaglib/data_loading/splitting.py -> build/bdist.linux-armv7l/wheel/rnaglib/data_loading 2024-07-09T22:15:00,834 copying build/lib/rnaglib/data_loading/rna_loader.py -> build/bdist.linux-armv7l/wheel/rnaglib/data_loading 2024-07-09T22:15:00,837 copying build/lib/rnaglib/data_loading/get_statistics.py -> build/bdist.linux-armv7l/wheel/rnaglib/data_loading 2024-07-09T22:15:00,839 creating build/bdist.linux-armv7l/wheel/rnaglib/ged 2024-07-09T22:15:00,840 copying build/lib/rnaglib/ged/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/ged 2024-07-09T22:15:00,842 copying build/lib/rnaglib/ged/ged_nx.py -> build/bdist.linux-armv7l/wheel/rnaglib/ged 2024-07-09T22:15:00,845 copying build/lib/rnaglib/ged/rna_ged_nx.py -> build/bdist.linux-armv7l/wheel/rnaglib/ged 2024-07-09T22:15:00,847 creating build/bdist.linux-armv7l/wheel/rnaglib/representations 2024-07-09T22:15:00,848 copying build/lib/rnaglib/representations/graph.py -> build/bdist.linux-armv7l/wheel/rnaglib/representations 2024-07-09T22:15:00,850 copying build/lib/rnaglib/representations/rings.py -> build/bdist.linux-armv7l/wheel/rnaglib/representations 2024-07-09T22:15:00,852 copying build/lib/rnaglib/representations/voxel.py -> build/bdist.linux-armv7l/wheel/rnaglib/representations 2024-07-09T22:15:00,854 copying build/lib/rnaglib/representations/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/representations 2024-07-09T22:15:00,856 copying build/lib/rnaglib/representations/point_cloud.py -> build/bdist.linux-armv7l/wheel/rnaglib/representations 2024-07-09T22:15:00,858 copying build/lib/rnaglib/representations/representation.py -> build/bdist.linux-armv7l/wheel/rnaglib/representations 2024-07-09T22:15:00,860 creating build/bdist.linux-armv7l/wheel/rnaglib/kernels 2024-07-09T22:15:00,861 copying build/lib/rnaglib/kernels/node_sim.py -> build/bdist.linux-armv7l/wheel/rnaglib/kernels 2024-07-09T22:15:00,864 copying build/lib/rnaglib/kernels/__init__.py -> build/bdist.linux-armv7l/wheel/rnaglib/kernels 2024-07-09T22:15:00,865 running install_egg_info 2024-07-09T22:15:00,868 Copying src/rnaglib.egg-info to build/bdist.linux-armv7l/wheel/rnaglib-2.2.5-py3.11.egg-info 2024-07-09T22:15:00,880 running install_scripts 2024-07-09T22:15:00,897 creating build/bdist.linux-armv7l/wheel/rnaglib-2.2.5.dist-info/WHEEL 2024-07-09T22:15:00,899 creating '/tmp/pip-wheel-90q01wpi/.tmp-5p7wj_1u/rnaglib-2.2.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-09T22:15:00,902 adding 'rnaglib/__init__.py' 2024-07-09T22:15:00,904 adding 'rnaglib/bin/__init__.py' 2024-07-09T22:15:00,905 adding 'rnaglib/bin/rnaglib_download.py' 2024-07-09T22:15:00,906 adding 'rnaglib/bin/rnaglib_index.py' 2024-07-09T22:15:00,908 adding 'rnaglib/bin/rnaglib_prepare_data.py' 2024-07-09T22:15:00,909 adding 'rnaglib/bin/rnaglib_tokenize.py' 2024-07-09T22:15:00,911 adding 'rnaglib/config/__init__.py' 2024-07-09T22:15:00,912 adding 'rnaglib/config/build_iso_mat.py' 2024-07-09T22:15:00,914 adding 'rnaglib/config/graph_keys.py' 2024-07-09T22:15:00,915 adding 'rnaglib/config/ligands.py' 2024-07-09T22:15:00,922 adding 'rnaglib/config/rna_smiles.txt' 2024-07-09T22:15:00,924 adding 'rnaglib/data/__init__.py' 2024-07-09T22:15:00,926 adding 'rnaglib/data_loading/__init__.py' 2024-07-09T22:15:00,928 adding 'rnaglib/data_loading/get_statistics.py' 2024-07-09T22:15:00,942 adding 'rnaglib/data_loading/graph_index_NR.json' 2024-07-09T22:15:00,945 adding 'rnaglib/data_loading/rna_dataset.py' 2024-07-09T22:15:00,947 adding 'rnaglib/data_loading/rna_loader.py' 2024-07-09T22:15:00,949 adding 'rnaglib/data_loading/splitting.py' 2024-07-09T22:15:00,950 adding 'rnaglib/data_loading/test.py' 2024-07-09T22:15:00,952 adding 'rnaglib/drawing/__init__.py' 2024-07-09T22:15:00,953 adding 'rnaglib/drawing/rna_draw.py' 2024-07-09T22:15:00,955 adding 'rnaglib/drawing/rna_layout.py' 2024-07-09T22:15:00,957 adding 'rnaglib/examples/__init__.py' 2024-07-09T22:15:00,958 adding 'rnaglib/examples/rnaglib_first.py' 2024-07-09T22:15:00,959 adding 'rnaglib/examples/third_example.py' 2024-07-09T22:15:00,961 adding 'rnaglib/ged/__init__.py' 2024-07-09T22:15:00,966 adding 'rnaglib/ged/ged_nx.py' 2024-07-09T22:15:00,968 adding 'rnaglib/ged/rna_ged_nx.py' 2024-07-09T22:15:00,969 adding 'rnaglib/kernels/__init__.py' 2024-07-09T22:15:00,973 adding 'rnaglib/kernels/node_sim.py' 2024-07-09T22:15:00,974 adding 'rnaglib/learning/__init__.py' 2024-07-09T22:15:00,976 adding 'rnaglib/learning/learn.py' 2024-07-09T22:15:00,978 adding 'rnaglib/learning/learning_utils.py' 2024-07-09T22:15:00,980 adding 'rnaglib/learning/models.py' 2024-07-09T22:15:00,981 adding 'rnaglib/learning/task_models.py' 2024-07-09T22:15:00,983 adding 'rnaglib/prepare_data/__init__.py' 2024-07-09T22:15:00,985 adding 'rnaglib/prepare_data/annotations.py' 2024-07-09T22:15:00,986 adding 'rnaglib/prepare_data/chopper.py' 2024-07-09T22:15:00,987 adding 'rnaglib/prepare_data/describe_datasets.py' 2024-07-09T22:15:00,989 adding 'rnaglib/prepare_data/dssr_2_graphs.py' 2024-07-09T22:15:00,991 adding 'rnaglib/prepare_data/filters.py' 2024-07-09T22:15:00,992 adding 'rnaglib/prepare_data/fr3d_2_graphs.py' 2024-07-09T22:15:00,993 adding 'rnaglib/prepare_data/hash_check.py' 2024-07-09T22:15:00,995 adding 'rnaglib/prepare_data/khop_annotate.py' 2024-07-09T22:15:00,997 adding 'rnaglib/prepare_data/main.py' 2024-07-09T22:15:00,998 adding 'rnaglib/prepare_data/retrieve_structures.py' 2024-07-09T22:15:00,999 adding 'rnaglib/prepare_data/test.py' 2024-07-09T22:15:01,001 adding 'rnaglib/prepare_data/tests/clean_graphs.py' 2024-07-09T22:15:01,003 adding 'rnaglib/prepare_data/tests/interfaces.py' 2024-07-09T22:15:01,004 adding 'rnaglib/prepare_data/tests/is_dna.py' 2024-07-09T22:15:01,005 adding 'rnaglib/prepare_data/tests/subset_graphs.py' 2024-07-09T22:15:01,007 adding 'rnaglib/representations/__init__.py' 2024-07-09T22:15:01,008 adding 'rnaglib/representations/graph.py' 2024-07-09T22:15:01,009 adding 'rnaglib/representations/point_cloud.py' 2024-07-09T22:15:01,011 adding 'rnaglib/representations/representation.py' 2024-07-09T22:15:01,012 adding 'rnaglib/representations/rings.py' 2024-07-09T22:15:01,013 adding 'rnaglib/representations/voxel.py' 2024-07-09T22:15:01,015 adding 'rnaglib/splitters/__init__.py' 2024-07-09T22:15:01,017 adding 'rnaglib/splitters/splitters.py' 2024-07-09T22:15:01,018 adding 'rnaglib/splitters/splitting_utils.py' 2024-07-09T22:15:01,020 adding 'rnaglib/tasks/__init__.py' 2024-07-09T22:15:01,022 adding 'rnaglib/tasks/benchmark_binding_site.py' 2024-07-09T22:15:01,024 adding 'rnaglib/tasks/task.py' 2024-07-09T22:15:01,025 adding 'rnaglib/tasks/RBP_Graph/__init__.py' 2024-07-09T22:15:01,027 adding 'rnaglib/tasks/RBP_Graph/demo.py' 2024-07-09T22:15:01,028 adding 'rnaglib/tasks/RBP_Graph/protein_binding.py' 2024-07-09T22:15:01,030 adding 'rnaglib/tasks/RBP_Node/__init__.py' 2024-07-09T22:15:01,031 adding 'rnaglib/tasks/RBP_Node/demo.py' 2024-07-09T22:15:01,032 adding 'rnaglib/tasks/RBP_Node/protein_binding_site.py' 2024-07-09T22:15:01,034 adding 'rnaglib/tasks/RNA_CM/__init__.py' 2024-07-09T22:15:01,035 adding 'rnaglib/tasks/RNA_CM/chemical_modification.py' 2024-07-09T22:15:01,037 adding 'rnaglib/tasks/RNA_CM/demo.py' 2024-07-09T22:15:01,038 adding 'rnaglib/tasks/RNA_IF/__init__.py' 2024-07-09T22:15:01,040 adding 'rnaglib/tasks/RNA_IF/benchmark_demo.py' 2024-07-09T22:15:01,042 adding 'rnaglib/tasks/RNA_IF/demo.py' 2024-07-09T22:15:01,043 adding 'rnaglib/tasks/RNA_IF/gRNAde.py' 2024-07-09T22:15:01,044 adding 'rnaglib/tasks/RNA_IF/inverse_folding.py' 2024-07-09T22:15:01,046 adding 'rnaglib/tasks/RNA_IF/data/downloader.py' 2024-07-09T22:15:01,048 adding 'rnaglib/tasks/RNA_Ligand/__init__.py' 2024-07-09T22:15:01,049 adding 'rnaglib/tasks/RNA_Ligand/demo.py' 2024-07-09T22:15:01,050 adding 'rnaglib/tasks/RNA_Ligand/ligand_identity.py' 2024-07-09T22:15:01,052 adding 'rnaglib/tasks/RNA_Site/__init__.py' 2024-07-09T22:15:01,053 adding 'rnaglib/tasks/RNA_Site/benchmark_binding_site.py' 2024-07-09T22:15:01,055 adding 'rnaglib/tasks/RNA_Site/benchmark_demo.py' 2024-07-09T22:15:01,056 adding 'rnaglib/tasks/RNA_Site/binding_site.py' 2024-07-09T22:15:01,057 adding 'rnaglib/tasks/RNA_Site/demo.py' 2024-07-09T22:15:01,059 adding 'rnaglib/tasks/RNA_VS/__init__.py' 2024-07-09T22:15:01,060 adding 'rnaglib/tasks/RNA_VS/build_data.py' 2024-07-09T22:15:01,062 adding 'rnaglib/tasks/RNA_VS/data.py' 2024-07-09T22:15:01,063 adding 'rnaglib/tasks/RNA_VS/demo.py' 2024-07-09T22:15:01,064 adding 'rnaglib/tasks/RNA_VS/evaluate.py' 2024-07-09T22:15:01,066 adding 'rnaglib/tasks/RNA_VS/ligands.py' 2024-07-09T22:15:01,067 adding 'rnaglib/tasks/RNA_VS/model.py' 2024-07-09T22:15:01,069 adding 'rnaglib/tasks/RNA_VS/task.py' 2024-07-09T22:15:01,071 adding 'rnaglib/tasks/depr/IF_gRNAde_model.py' 2024-07-09T22:15:01,072 adding 'rnaglib/tasks/depr/binding_site.py' 2024-07-09T22:15:01,074 adding 'rnaglib/tasks/depr/inverse_folding.py' 2024-07-09T22:15:01,076 adding 'rnaglib/tasks/experiments/benchmark_binding_site_model.py' 2024-07-09T22:15:01,077 adding 'rnaglib/tasks/experiments/benchmark_binding_site_model_embeddings.py' 2024-07-09T22:15:01,079 adding 'rnaglib/tasks/experiments/benchmark_chemical_modification_model.py' 2024-07-09T22:15:01,081 adding 'rnaglib/tasks/experiments/benchmark_chemical_modification_model_embeddings.py' 2024-07-09T22:15:01,082 adding 'rnaglib/tasks/experiments/benchmark_protein_site_model.py' 2024-07-09T22:15:01,084 adding 'rnaglib/tasks/experiments/benchmark_protein_site_model_embeddings.py' 2024-07-09T22:15:01,087 adding 'rnaglib/tasks/models/benchmark_binding_site_model.py' 2024-07-09T22:15:01,088 adding 'rnaglib/tasks/models/binding_site_model.py' 2024-07-09T22:15:01,090 adding 'rnaglib/tasks/models/chemical_modification_model.py' 2024-07-09T22:15:01,092 adding 'rnaglib/tasks/models/protein_binding_site_model.py' 2024-07-09T22:15:01,094 adding 'rnaglib/utils/__init__.py' 2024-07-09T22:15:01,096 adding 'rnaglib/utils/feature_maps.py' 2024-07-09T22:15:01,098 adding 'rnaglib/utils/graph_io.py' 2024-07-09T22:15:01,101 adding 'rnaglib/utils/graph_utils.py' 2024-07-09T22:15:01,103 adding 'rnaglib/utils/graphlet_hash.py' 2024-07-09T22:15:01,105 adding 'rnaglib/utils/misc.py' 2024-07-09T22:15:01,106 adding 'rnaglib/utils/task_utils.py' 2024-07-09T22:15:01,108 adding 'rnaglib-2.2.5.dist-info/LICENSE' 2024-07-09T22:15:01,109 adding 'rnaglib-2.2.5.dist-info/METADATA' 2024-07-09T22:15:01,110 adding 'rnaglib-2.2.5.dist-info/WHEEL' 2024-07-09T22:15:01,111 adding 'rnaglib-2.2.5.dist-info/entry_points.txt' 2024-07-09T22:15:01,112 adding 'rnaglib-2.2.5.dist-info/top_level.txt' 2024-07-09T22:15:01,114 adding 'rnaglib-2.2.5.dist-info/RECORD' 2024-07-09T22:15:01,119 removing build/bdist.linux-armv7l/wheel 2024-07-09T22:15:01,273 Building wheel for rnaglib (pyproject.toml): finished with status 'done' 2024-07-09T22:15:01,281 Created wheel for rnaglib: filename=rnaglib-2.2.5-py3-none-any.whl size=215690 sha256=61ed1022baa62cad67dec5f72b736e9c21bb58d0b3bc32cf046e1e47dfc39d4c 2024-07-09T22:15:01,283 Stored in directory: /tmp/pip-ephem-wheel-cache-0p5grmkt/wheels/4c/9e/a2/ffb9031f0f25210b51439a5c61cd9af5eccc8fcadebb460df2 2024-07-09T22:15:01,297 Successfully built rnaglib 2024-07-09T22:15:01,306 Removed build tracker: '/tmp/pip-build-tracker-wgc5s9be'