2024-07-11T13:11:13,764 Created temporary directory: /tmp/pip-build-tracker-e4929l49
2024-07-11T13:11:13,765 Initialized build tracking at /tmp/pip-build-tracker-e4929l49
2024-07-11T13:11:13,765 Created build tracker: /tmp/pip-build-tracker-e4929l49
2024-07-11T13:11:13,766 Entered build tracker: /tmp/pip-build-tracker-e4929l49
2024-07-11T13:11:13,766 Created temporary directory: /tmp/pip-wheel-avd6i22o
2024-07-11T13:11:13,770 Created temporary directory: /tmp/pip-ephem-wheel-cache-i7h22cfp
2024-07-11T13:11:13,794 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-11T13:11:13,798 2 location(s) to search for versions of moleculekit:
2024-07-11T13:11:13,798 * https://pypi.org/simple/moleculekit/
2024-07-11T13:11:13,798 * https://www.piwheels.org/simple/moleculekit/
2024-07-11T13:11:13,798 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-07-11T13:11:13,799 Getting page https://pypi.org/simple/moleculekit/
2024-07-11T13:11:13,801 Found index url https://pypi.org/simple/
2024-07-11T13:11:13,858 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-07-11T13:11:13,903   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,903   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-07-11T13:11:13,903   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,904   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-07-11T13:11:13,904   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,904   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-07-11T13:11:13,904   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,905   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-07-11T13:11:13,905   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,905   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-07-11T13:11:13,905   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,906   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-07-11T13:11:13,906   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,906   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-07-11T13:11:13,906   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,907   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-07-11T13:11:13,907   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,907   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-07-11T13:11:13,907   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,908   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-07-11T13:11:13,908   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,908   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-07-11T13:11:13,908   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,909   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-07-11T13:11:13,909   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,909   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-07-11T13:11:13,909   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,910   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-07-11T13:11:13,910   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,910   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-07-11T13:11:13,910   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,911   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-07-11T13:11:13,911   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,911   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-07-11T13:11:13,911   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,911   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-07-11T13:11:13,912   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,912   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-07-11T13:11:13,912   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,912   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-07-11T13:11:13,913   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,913   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-07-11T13:11:13,913   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,913   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-07-11T13:11:13,914   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,914   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-07-11T13:11:13,914   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,914   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-07-11T13:11:13,915   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,915   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-07-11T13:11:13,915   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,915   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-07-11T13:11:13,916   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,916   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-07-11T13:11:13,916   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,916   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-07-11T13:11:13,917   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,917   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-07-11T13:11:13,917   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,917   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-07-11T13:11:13,918   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,918   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-07-11T13:11:13,918   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,918   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-07-11T13:11:13,918   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,919   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2024-07-11T13:11:13,919   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,919   Found link https://files.pythonhosted.org/packages/13/f9/af3d7677c2eb61bb310ddad301ab47b9c1db2f923b0efad9ce605112aafb/moleculekit-0.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.1
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2024-07-11T13:11:13,920   Found link https://files.pythonhosted.org/packages/a1/bf/2b3762bf7738dd1850a06eb6330cd8d17c49acaa272d43fc80c7c9c44a04/moleculekit-0.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.3
2024-07-11T13:11:13,920   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/93/60/0d8fb434654ca07dbd7e9ce3f8d8083e435866650d2a6423bd1fe39cfcf2/moleculekit-0.3.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,921   Found link https://files.pythonhosted.org/packages/7e/e0/d4abeaf42102abf8d132168518d29b8fec430608a3bb484a3254b63e9d37/moleculekit-0.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.4
2024-07-11T13:11:13,921   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/94/5a/b800d3737fc73a0197bf983ce179f8bedaa71a331029a733aefedc2a8a0c/moleculekit-0.3.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,921   Found link https://files.pythonhosted.org/packages/18/8a/a376ec94bd0c414528774a510846e3a34afec6356cda3d31d3a044a74a15/moleculekit-0.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.5
2024-07-11T13:11:13,921   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ee/c1/d073c238d26f3e4aaec53de003bc232d6758dbfd334f0f0af7aa2b50f941/moleculekit-0.3.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,922   Found link https://files.pythonhosted.org/packages/29/c4/2af9ce826d6a8d2327401dd1a05b3beff8e1f96911d0e334db20410975ee/moleculekit-0.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.7
2024-07-11T13:11:13,922   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e3/2d/da6853b8eb526f2a035e5996ae697422594832d9f890a66977981d46edec/moleculekit-0.3.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,922   Found link https://files.pythonhosted.org/packages/b0/8f/652d19d5bd69898632ed95d0a37095d2a1ed754d4147d20e1076d0b88e87/moleculekit-0.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.8
2024-07-11T13:11:13,922   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1f/d2/4da1254f5b07bedf974fdb9f19ab694a6cf553dc50ab700e3b09ec000031/moleculekit-0.3.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,923   Found link https://files.pythonhosted.org/packages/ac/14/2cef434c3bdc911ca4e7aabce48b50f869cf8f829f24958037f9dbb6521e/moleculekit-0.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.9
2024-07-11T13:11:13,923   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/18/d2/3565f29e52927e9cc0e9a6e77908f7bcd39bb25cc6a953ef326ebb0b920f/moleculekit-0.4.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,923   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
2024-07-11T13:11:13,923   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/45/48/d6f7e3ff07d4e04aced25dc1e28790e8d1d2aa95ccd0db0f0043e354f0de/moleculekit-0.4.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,923   Found link https://files.pythonhosted.org/packages/5c/8c/e37b37f907a6d009fbc458764ab561b9fe758cf0e0d349b7d19908820ab1/moleculekit-0.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.2
2024-07-11T13:11:13,924   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ed/8c/cf4a2f026f7b867bcc33cfac6c1fede5ee244c962112f0dc245fcac0939b/moleculekit-0.4.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,924   Found link https://files.pythonhosted.org/packages/40/e2/a9ce14fedc2bf7c9b1678a21e860878b5ea4f37b9820ef299ccc70634094/moleculekit-0.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.3
2024-07-11T13:11:13,924   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4b/f0/8b8df48948c27171f2db632801a49bd08f3f222d1c6e69abc9281962eb29/moleculekit-0.4.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,924   Found link https://files.pythonhosted.org/packages/a4/6d/cdf319e5cf1cbe68e02ce15c36001cf739b9ca932fcafa2bff354c581560/moleculekit-0.4.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.4
2024-07-11T13:11:13,925   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/26/45/55b970222953abfaff88d3ee5bbe64b544af8e686254b80f9dbcdc027754/moleculekit-0.4.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,925   Found link https://files.pythonhosted.org/packages/8f/22/90193aaf5014419463425cf48b2857ffb08d1a85df3af6407f370ea39358/moleculekit-0.4.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.6
2024-07-11T13:11:13,925   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/24/38/72e6ecc3ee5ad4463161bfbba8c4ee06716a2d393eee3dfcbecfc6566ad4/moleculekit-0.4.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,925   Found link https://files.pythonhosted.org/packages/eb/7f/e4e084eaf2a6e4af0d1ce91c0b210836fc244592155000f92383528d20e4/moleculekit-0.4.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.7
2024-07-11T13:11:13,926   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3f/a5/68b5af554f766d3dceef94275a75af28358200e0f741a86d38db878c60e1/moleculekit-0.4.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,926   Found link https://files.pythonhosted.org/packages/e1/2c/f4b752620b3f00be07e0f661bb3364e220e8b26bb0ce59e95aab7809b0a8/moleculekit-0.4.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.8
2024-07-11T13:11:13,926   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5c/75/2a9151eb7a9fbbd8b36c5283452449e596f081188d25c07f33a176783e8e/moleculekit-0.5.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,926   Found link https://files.pythonhosted.org/packages/31/e6/a052ad91265d7e72fcf32d9335d746bba3c06b23fc5a163960bd36e6dde6/moleculekit-0.5.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.2
2024-07-11T13:11:13,927   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/b0/15/bc106c1d99e2b235c80427b4d70f6392bf76a9fe17d2c8df562a03a79aaf/moleculekit-0.5.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,927   Found link https://files.pythonhosted.org/packages/16/e8/a60ecf23c91f1248aaeca4c5a3aacb14887fa3785e061ab5e225e06d7de3/moleculekit-0.5.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.3
2024-07-11T13:11:13,927   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/11/34/1eef198a596de2bbe11b5d156183d4e8853296cee4f6eccb1e93f1acfe6b/moleculekit-0.5.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,927   Found link https://files.pythonhosted.org/packages/b1/30/da12019468d39b9fc72b300f6bc0cbc4045ad8ccc1b8f25aa9fb7dced289/moleculekit-0.5.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.4
2024-07-11T13:11:13,927   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/c2/ae/6dcb36295ba009458f4ac17d3099f65f30ef7b52ee289ce857eaa09901e9/moleculekit-0.5.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,928   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5e/49/34aa32d017a3ff0c43e9743813fb882a1b2f4721a6429a14d3974d30b013/moleculekit-0.5.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,928   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3a/53/7ae8cc33411c0f5f83d245abfeabfd81ed123a3cfbf8a500ec4d96648275/moleculekit-0.5.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,928   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/33/cb/c92c01bcbe6721a0de0efc2a6000170f30941c58471578d25966f935c655/moleculekit-0.5.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,928   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/13/6a/e73e6d343e35473a200e0744ab09efaa39adeebbbe191f752bc23d7a9b3a/moleculekit-0.5.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,928   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ee/29/022155d624fde59e89cecd4a7f95e2a183d3ec0a12251cf730661ae38179/moleculekit-0.6.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,929   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/65/8e/ec9922bc8930ae3a78e0a98af4fe053e8c359ccedceb54ced12bb1954815/moleculekit-0.6.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T13:11:13,929   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4e/11/e6c8a945d9e7bc12d1829930ad91a9ee548611b7c26387a5bb7bfc3f10f9/moleculekit-0.6.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-07-11T13:11:13,936   Found link https://files.pythonhosted.org/packages/c7/e6/72a4be7c3db86704ca264e68de620327a6c292f01b2fb9a9a186e0909622/moleculekit-0.9.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.6
2024-07-11T13:11:13,937   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-07-11T13:11:13,937   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-07-11T13:11:13,937   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-07-11T13:11:13,937   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-07-11T13:11:13,938   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-07-11T13:11:13,938   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-07-11T13:11:13,938   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-07-11T13:11:13,938   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-07-11T13:11:13,939   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-07-11T13:11:13,939   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-07-11T13:11:13,939   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-07-11T13:11:13,940   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-07-11T13:11:13,940   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-07-11T13:11:13,940   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-07-11T13:11:13,940   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-07-11T13:11:13,941   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-07-11T13:11:13,941   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-07-11T13:11:13,941   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-07-11T13:11:13,941   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-07-11T13:11:13,942   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-07-11T13:11:13,942   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-07-11T13:11:13,942   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-07-11T13:11:13,943   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-07-11T13:11:13,943   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-07-11T13:11:13,943   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-07-11T13:11:13,943   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-07-11T13:11:13,944   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-07-11T13:11:13,944   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-07-11T13:11:13,944   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-07-11T13:11:13,944   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-07-11T13:11:13,945   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-07-11T13:11:13,945   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-07-11T13:11:13,946   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-07-11T13:11:13,946   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-07-11T13:11:13,946   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-07-11T13:11:13,946   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-07-11T13:11:13,947   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-07-11T13:11:13,947   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-07-11T13:11:13,947   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-07-11T13:11:13,948   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-07-11T13:11:13,948   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-07-11T13:11:13,948   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-07-11T13:11:13,948   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-07-11T13:11:13,949   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-07-11T13:11:13,949   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-07-11T13:11:13,949   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-07-11T13:11:13,949   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-07-11T13:11:13,950   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-07-11T13:11:13,951   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-07-11T13:11:13,951   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-07-11T13:11:13,952   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-07-11T13:11:13,952   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-07-11T13:11:13,953   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-07-11T13:11:13,953   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-07-11T13:11:13,954   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-07-11T13:11:13,954   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-07-11T13:11:13,955   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-07-11T13:11:13,956   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-07-11T13:11:13,956   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-07-11T13:11:13,957   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-07-11T13:11:13,957   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-07-11T13:11:13,958   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-07-11T13:11:13,958   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-07-11T13:11:13,959   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-07-11T13:11:13,959   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-07-11T13:11:13,960   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-07-11T13:11:13,961   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-07-11T13:11:13,961   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2024-07-11T13:11:13,962   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-07-11T13:11:13,962   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-07-11T13:11:13,963   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-07-11T13:11:13,963   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-07-11T13:11:13,964   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-07-11T13:11:13,964   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-07-11T13:11:13,965   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-07-11T13:11:13,965   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-07-11T13:11:13,966   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-07-11T13:11:13,967   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-07-11T13:11:13,967   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-07-11T13:11:13,968   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-07-11T13:11:13,968   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-07-11T13:11:13,969   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-07-11T13:11:13,969   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-07-11T13:11:13,970   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-07-11T13:11:13,970   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-07-11T13:11:13,971   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-07-11T13:11:13,972   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-07-11T13:11:13,972   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-07-11T13:11:13,973   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-07-11T13:11:13,973   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-07-11T13:11:13,974   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-07-11T13:11:13,974   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-07-11T13:11:13,975   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-07-11T13:11:13,975   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-07-11T13:11:13,976   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-07-11T13:11:13,976   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-07-11T13:11:13,977   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-07-11T13:11:13,978   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-07-11T13:11:13,978   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-07-11T13:11:13,979   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-07-11T13:11:13,979   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-07-11T13:11:13,980   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-07-11T13:11:13,980   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-07-11T13:11:13,981   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-07-11T13:11:13,981   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-07-11T13:11:13,982   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-07-11T13:11:13,983   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-07-11T13:11:13,983   Found link https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.31
2024-07-11T13:11:13,984   Found link https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.32
2024-07-11T13:11:13,984   Found link https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.33
2024-07-11T13:11:13,985   Found link https://files.pythonhosted.org/packages/d4/0f/1b1f0d41c3ff855afca374140213f1c43b3a9659eebc4460899fead843ff/moleculekit-1.8.34.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.34
2024-07-11T13:11:13,985   Found link https://files.pythonhosted.org/packages/26/6b/1104888679e9faf8b0e4e9b15586ea7532e171fe127c06e067c9ad563238/moleculekit-1.8.35.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.35
2024-07-11T13:11:13,986   Found link https://files.pythonhosted.org/packages/cf/5e/035ee54b5606e7489eed8e94571ca014339f5a6959902eff9f40bf4e0d7f/moleculekit-1.8.36.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.36
2024-07-11T13:11:13,986   Found link https://files.pythonhosted.org/packages/38/d6/30462b4aeb3cb9ae0244bc9882779d3249e39393f5ea71c6abc2d36bb1ed/moleculekit-1.9.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.0
2024-07-11T13:11:13,987   Found link https://files.pythonhosted.org/packages/03/ac/c81679ee7481d8dd7e0fa576dafe3963c48c065ab2ca808b53f59693c211/moleculekit-1.9.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.1
2024-07-11T13:11:13,987 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-07-11T13:11:13,988 Getting page https://www.piwheels.org/simple/moleculekit/
2024-07-11T13:11:13,989 Found index url https://www.piwheels.org/simple/
2024-07-11T13:11:14,066 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-07-11T13:11:14,168   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp311-cp311-linux_armv6l.whl#sha256=d6035d34abe9a702dc48a7b6e979670c6e0eb97db1a3a940dbd9f96bfc42eb03 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,168   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp311-cp311-linux_armv7l.whl#sha256=d6035d34abe9a702dc48a7b6e979670c6e0eb97db1a3a940dbd9f96bfc42eb03 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,169   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp311-cp311-linux_armv6l.whl#sha256=e0fa24f661e395d9f38f9e1616422ff28e4ed401dd67c35c172ffccf1ea54038 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,169   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp311-cp311-linux_armv7l.whl#sha256=e0fa24f661e395d9f38f9e1616422ff28e4ed401dd67c35c172ffccf1ea54038 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,169   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp39-cp39-linux_armv6l.whl#sha256=671167765eb458b97e36ab9bd793dd20c4eec64fd47d38eba8e093b8427307b1 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,169   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp39-cp39-linux_armv7l.whl#sha256=671167765eb458b97e36ab9bd793dd20c4eec64fd47d38eba8e093b8427307b1 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,169   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp311-cp311-linux_armv6l.whl#sha256=39ce57e47150b9abdc5c79aee4f41a74f5f79b84caf1d9f038f68d172e3d11f3 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,170   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp311-cp311-linux_armv7l.whl#sha256=39ce57e47150b9abdc5c79aee4f41a74f5f79b84caf1d9f038f68d172e3d11f3 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,170   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp39-cp39-linux_armv6l.whl#sha256=bc4488b38699175360d9d00251d83750b68be24b494759299c9703344259af9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,170   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp39-cp39-linux_armv7l.whl#sha256=bc4488b38699175360d9d00251d83750b68be24b494759299c9703344259af9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,170   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.34-cp311-cp311-linux_armv6l.whl#sha256=942c98d7f1683d7846c9afa7242cfc6ce8754a90853a7129c5eae6f1081d1d0c (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,170   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.34-cp311-cp311-linux_armv7l.whl#sha256=942c98d7f1683d7846c9afa7242cfc6ce8754a90853a7129c5eae6f1081d1d0c (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,171   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.34-cp39-cp39-linux_armv6l.whl#sha256=3e3ca8c16ef993abbd889b734326ba2303227bdd4797f95337551e5a57b7c4ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T13:11:14,171   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.34-cp39-cp39-linux_armv7l.whl#sha256=3e3ca8c16ef993abbd889b734326ba2303227bdd4797f95337551e5a57b7c4ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-07-11T13:11:14,214   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T13:11:14,215   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,215   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,215   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,215   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,215   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,215   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,216   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,216   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,216   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,216   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,216   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,217   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,217   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,217   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,217   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,217   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,218   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,218   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,218   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,218   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,218   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,219   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,219   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,219   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,219   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,219   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,220   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,220   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,220   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,220   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,220   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,220   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,221   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,221   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,221   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,221   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,221   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,222   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,222   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,222   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,222   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,222   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,223   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,223   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,223   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,223   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,223   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,224   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,224   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,224   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,224   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,224   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,224   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,225   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,225   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,225   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,225   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,225   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,226   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,226   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T13:11:14,232   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,232   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,232   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,232   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,232   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,233   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,233   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,233   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,233   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T13:11:14,234   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,234   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T13:11:14,234   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,234   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,235   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,235   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,235   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,235   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,235   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,235   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.2-py3-none-any.whl#sha256=70e4609cb3c674eb4fe10a08e84363015b5902e945d850197ef2b13b7cbfe4e0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,236   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T13:11:14,236   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.32-py3-none-any.whl#sha256=7ed0aed2d398d06856936c77943277e58b3c5ec588e619d1bd18e433bfec7564 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,236   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.31-py3-none-any.whl#sha256=af99e15f25bf5959a538b538677dec0e483d524f6ae9698b92885f3667b8a5c9 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T13:11:14,237   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.29-py3-none-any.whl#sha256=79d2f4b46738f696865e3b5c591afd379add5aa8e1dfc58fbfb58e046e3810f1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,237   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,237   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.26-py3-none-any.whl#sha256=fe35ec2f09b9b40631f7b47c1fe463b18166a272776c4c4f839718c50fd62e14 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,237   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T13:11:14,238   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T13:11:14,238   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,238   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.16-py3-none-any.whl#sha256=8045990a2fc7c805a4ab8244abe9eae67ac92495cbce12f1c9e8b0daa26a77b1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,239   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,239   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T13:11:14,239   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T13:11:14,240   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T13:11:14,240 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-07-11T13:11:14,241 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-07-11T13:11:14,284 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-07-11T13:11:14,302 Collecting moleculekit==1.9.0
2024-07-11T13:11:14,305   Created temporary directory: /tmp/pip-unpack-kkd2myv6
2024-07-11T13:11:14,347   Downloading moleculekit-1.9.0.tar.gz (6.8 MB)
2024-07-11T13:11:16,558   Added moleculekit==1.9.0 from https://files.pythonhosted.org/packages/38/d6/30462b4aeb3cb9ae0244bc9882779d3249e39393f5ea71c6abc2d36bb1ed/moleculekit-1.9.0.tar.gz to build tracker '/tmp/pip-build-tracker-e4929l49'
2024-07-11T13:11:16,566   Created temporary directory: /tmp/pip-build-env-fskmxbwq
2024-07-11T13:11:16,576   Installing build dependencies: started
2024-07-11T13:11:16,577   Running command pip subprocess to install build dependencies
2024-07-11T13:11:17,742   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-07-11T13:11:18,268   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-11T13:11:19,753   Collecting setuptools
2024-07-11T13:11:19,771     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.3.0-py3-none-any.whl (931 kB)
2024-07-11T13:11:20,852   Collecting numpy>=1.18.5
2024-07-11T13:11:20,870     Using cached https://www.piwheels.org/simple/numpy/numpy-2.0.0-cp39-cp39-linux_armv7l.whl (5.8 MB)
2024-07-11T13:11:22,509   Collecting Cython>=0.29.21
2024-07-11T13:11:22,525     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-07-11T13:11:22,891   Collecting toml
2024-07-11T13:11:22,911     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-07-11T13:11:23,011   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-07-11T13:11:23,022     Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-07-11T13:11:23,042        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.3/45.3 kB 3.6 MB/s eta 0:00:00
2024-07-11T13:11:23,171   Collecting tomli (from versioneer[toml]==0.28)
2024-07-11T13:11:23,186     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-07-11T13:11:24,998   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-07-11T13:11:25,035     Creating /tmp/pip-build-env-fskmxbwq/overlay/bin
2024-07-11T13:11:25,037     changing mode of /tmp/pip-build-env-fskmxbwq/overlay/bin/versioneer to 755
2024-07-11T13:11:35,545     changing mode of /tmp/pip-build-env-fskmxbwq/overlay/bin/f2py to 755
2024-07-11T13:11:35,547     changing mode of /tmp/pip-build-env-fskmxbwq/overlay/bin/numpy-config to 755
2024-07-11T13:11:40,445     changing mode of /tmp/pip-build-env-fskmxbwq/overlay/bin/cygdb to 755
2024-07-11T13:11:40,448     changing mode of /tmp/pip-build-env-fskmxbwq/overlay/bin/cython to 755
2024-07-11T13:11:40,450     changing mode of /tmp/pip-build-env-fskmxbwq/overlay/bin/cythonize to 755
2024-07-11T13:11:40,477   Successfully installed Cython-3.0.10 numpy-2.0.0 setuptools-70.3.0 toml-0.10.2 tomli-2.0.1 versioneer-0.28

2024-07-11T13:11:40,660   [notice] A new release of pip is available: 24.0 -> 24.1.2
2024-07-11T13:11:40,660   [notice] To update, run: python3 -m pip install --upgrade pip
2024-07-11T13:11:41,137   Installing build dependencies: finished with status 'done'
2024-07-11T13:11:41,142   Getting requirements to build wheel: started
2024-07-11T13:11:41,143   Running command Getting requirements to build wheel
2024-07-11T13:12:20,045   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-07-11T13:12:29,409   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T13:12:29,409   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T13:12:29,409   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T13:12:29,409   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T13:12:29,410   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T13:12:29,410   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T13:12:29,410   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T13:12:29,410   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T13:12:29,410   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T13:12:29,410   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T13:12:29,410   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-11T13:12:29,411   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-11T13:12:29,411   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-11T13:12:29,411   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-11T13:12:29,411   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T13:12:29,411   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-07-11T13:12:29,411   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-07-11T13:12:29,411   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-07-11T13:12:29,412   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-07-11T13:12:29,412   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-07-11T13:12:29,412   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-07-11T13:12:29,412   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-07-11T13:12:29,412   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-07-11T13:12:29,412   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-07-11T13:12:29,412   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-07-11T13:12:29,413   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-07-11T13:12:29,413   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-07-11T13:12:29,413   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-07-11T13:12:29,413   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-07-11T13:12:29,413   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-07-11T13:12:29,732   running egg_info
2024-07-11T13:12:29,738   writing moleculekit.egg-info/PKG-INFO
2024-07-11T13:12:29,743   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-07-11T13:12:29,746   writing requirements to moleculekit.egg-info/requires.txt
2024-07-11T13:12:29,747   writing top-level names to moleculekit.egg-info/top_level.txt
2024-07-11T13:12:29,779   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,780   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,780   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,781   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,781   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,781   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,782   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,782   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,783   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,783   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,783   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,784   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,784   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,784   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,785   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,785   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,785   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,786   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,786   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,787   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,787   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,787   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,788   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,788   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,788   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,789   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,789   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,789   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,790   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,790   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,790   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,791   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,791   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,791   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,792   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,792   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,792   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,793   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,793   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,793   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,794   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,794   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,794   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,795   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,795   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,796   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,796   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,796   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-11T13:12:29,797   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,797   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,798   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,798   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,798   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,799   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-11T13:12:29,800   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,801   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,801   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,803   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,803   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,804   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,804   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,804   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,806   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,806   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,807   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,807   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,807   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,809   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,809   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,809   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,810   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,810   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:29,822   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-11T13:12:29,857   reading manifest template 'MANIFEST.in'
2024-07-11T13:12:30,149   no previously-included directories found matching 'moleculekit/test-data'
2024-07-11T13:12:30,150   no previously-included directories found matching 'moleculekit/tests'
2024-07-11T13:12:30,152   no previously-included directories found matching 'package'
2024-07-11T13:12:30,152   adding license file 'LICENSE'
2024-07-11T13:12:30,171   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-11T13:12:31,767   Getting requirements to build wheel: finished with status 'done'
2024-07-11T13:12:31,772   Created temporary directory: /tmp/pip-modern-metadata-o7b55upp
2024-07-11T13:12:31,774   Preparing metadata (pyproject.toml): started
2024-07-11T13:12:31,775   Running command Preparing metadata (pyproject.toml)
2024-07-11T13:12:34,190   running dist_info
2024-07-11T13:12:34,192   creating /tmp/pip-modern-metadata-o7b55upp/moleculekit.egg-info
2024-07-11T13:12:34,197   writing /tmp/pip-modern-metadata-o7b55upp/moleculekit.egg-info/PKG-INFO
2024-07-11T13:12:34,202   writing dependency_links to /tmp/pip-modern-metadata-o7b55upp/moleculekit.egg-info/dependency_links.txt
2024-07-11T13:12:34,204   writing requirements to /tmp/pip-modern-metadata-o7b55upp/moleculekit.egg-info/requires.txt
2024-07-11T13:12:34,205   writing top-level names to /tmp/pip-modern-metadata-o7b55upp/moleculekit.egg-info/top_level.txt
2024-07-11T13:12:34,207   writing manifest file '/tmp/pip-modern-metadata-o7b55upp/moleculekit.egg-info/SOURCES.txt'
2024-07-11T13:12:34,232   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,232   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,232   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,232   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,233   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,233   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,233   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,233   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,233   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,233   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,233   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,234   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,234   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,234   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,234   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,234   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,234   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,234   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,234   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,235   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,235   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,235   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,235   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,235   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,235   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,235   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-11T13:12:34,236   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,236   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,236   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,236   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,236   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,237   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,237   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,237   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,237   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,237   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,237   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,237   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,238   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,238   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,238   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,238   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,238   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,238   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,238   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-11T13:12:34,239   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,239   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,239   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,239   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,239   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,239   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,239   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,239   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,240   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,240   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,240   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,241   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,241   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,241   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,242   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,242   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,242   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,243   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,243   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,243   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,243   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,244   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,244   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,244   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,244   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,244   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:34,250   reading manifest file '/tmp/pip-modern-metadata-o7b55upp/moleculekit.egg-info/SOURCES.txt'
2024-07-11T13:12:34,252   reading manifest template 'MANIFEST.in'
2024-07-11T13:12:34,527   no previously-included directories found matching 'moleculekit/test-data'
2024-07-11T13:12:34,528   no previously-included directories found matching 'moleculekit/tests'
2024-07-11T13:12:34,529   no previously-included directories found matching 'package'
2024-07-11T13:12:34,529   adding license file 'LICENSE'
2024-07-11T13:12:34,543   writing manifest file '/tmp/pip-modern-metadata-o7b55upp/moleculekit.egg-info/SOURCES.txt'
2024-07-11T13:12:34,552   creating '/tmp/pip-modern-metadata-o7b55upp/moleculekit-1.9.0.dist-info'
2024-07-11T13:12:34,740   Preparing metadata (pyproject.toml): finished with status 'done'
2024-07-11T13:12:34,747   Source in /tmp/pip-wheel-avd6i22o/moleculekit_d3c29fab5e8f48aa8456108fe569f197 has version 1.9.0, which satisfies requirement moleculekit==1.9.0 from https://files.pythonhosted.org/packages/38/d6/30462b4aeb3cb9ae0244bc9882779d3249e39393f5ea71c6abc2d36bb1ed/moleculekit-1.9.0.tar.gz
2024-07-11T13:12:34,748   Removed moleculekit==1.9.0 from https://files.pythonhosted.org/packages/38/d6/30462b4aeb3cb9ae0244bc9882779d3249e39393f5ea71c6abc2d36bb1ed/moleculekit-1.9.0.tar.gz from build tracker '/tmp/pip-build-tracker-e4929l49'
2024-07-11T13:12:34,754 Created temporary directory: /tmp/pip-unpack-wzu2vlrl
2024-07-11T13:12:34,755 Created temporary directory: /tmp/pip-unpack-z9f7byqd
2024-07-11T13:12:34,763 Building wheels for collected packages: moleculekit
2024-07-11T13:12:34,767   Created temporary directory: /tmp/pip-wheel-8inw1np_
2024-07-11T13:12:34,768   Destination directory: /tmp/pip-wheel-8inw1np_
2024-07-11T13:12:34,770   Building wheel for moleculekit (pyproject.toml): started
2024-07-11T13:12:34,771   Running command Building wheel for moleculekit (pyproject.toml)
2024-07-11T13:12:37,285   running bdist_wheel
2024-07-11T13:12:37,300   running build
2024-07-11T13:12:37,301   running build_py
2024-07-11T13:12:37,308   creating build
2024-07-11T13:12:37,309   creating build/lib.linux-armv7l-cpython-39
2024-07-11T13:12:37,309   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,310   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,313   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,315   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,317   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,318   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,320   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,322   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,324   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,326   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,328   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,331   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,333   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,337   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,339   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,341   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,345   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,347   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,349   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,351   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,354   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,357   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:37,359   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T13:12:37,360   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T13:12:37,363   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T13:12:37,365   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T13:12:37,368   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,369   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,372   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,376   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,378   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,380   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,383   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,385   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,388   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,390   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,393   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,394   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,397   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,399   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,402   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,404   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T13:12:37,408   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T13:12:37,408   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T13:12:37,411   copying moleculekit/smallmol/smallmolcdp.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T13:12:37,413   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T13:12:37,415   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T13:12:37,418   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T13:12:37,420   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T13:12:37,422   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T13:12:37,425   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-07-11T13:12:37,426   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-07-11T13:12:37,428   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-11T13:12:37,429   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-11T13:12:37,430   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-11T13:12:37,434   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-11T13:12:37,437   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-11T13:12:37,438   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-11T13:12:37,441   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-11T13:12:37,444   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T13:12:37,444   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T13:12:37,447   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T13:12:37,449   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T13:12:37,451   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T13:12:37,454   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,455   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,457   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,459   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,462   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,464   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,466   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,468   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,471   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,472   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,475   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,478   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,480   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,483   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,485   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T13:12:37,488   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T13:12:37,489   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T13:12:37,491   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T13:12:37,492   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T13:12:37,495   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T13:12:37,498   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T13:12:37,499   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T13:12:37,501   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T13:12:37,503   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T13:12:37,506   copying moleculekit/pdbx/reader/BinaryCifReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T13:12:37,508   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T13:12:37,511   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-11T13:12:37,512   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-11T13:12:37,514   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-11T13:12:37,516   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T13:12:37,517   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T13:12:37,520   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T13:12:37,522   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T13:12:37,524   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T13:12:37,526   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-11T13:12:37,527   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-11T13:12:37,528   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-11T13:12:37,530   running egg_info
2024-07-11T13:12:37,535   writing moleculekit.egg-info/PKG-INFO
2024-07-11T13:12:37,539   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-07-11T13:12:37,540   writing requirements to moleculekit.egg-info/requires.txt
2024-07-11T13:12:37,542   writing top-level names to moleculekit.egg-info/top_level.txt
2024-07-11T13:12:37,561   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,561   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,562   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,562   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,562   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,562   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,562   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,562   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,562   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,563   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,563   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,563   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,563   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,563   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,563   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,563   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,563   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,564   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,564   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,564   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,564   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,564   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,564   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,564   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,565   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,565   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,565   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,565   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,565   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,565   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,565   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,565   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,566   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,566   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,566   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,566   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,566   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,566   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,566   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,567   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,567   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,567   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,567   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,567   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,567   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,567   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,567   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,568   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,568   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,568   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,568   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,568   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,568   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,568   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,568   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,569   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,569   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,569   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,569   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,569   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,571   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,571   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,571   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,571   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,571   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,572   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,572   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,572   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,572   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,572   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,573   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,573   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,573   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,574   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,574   dependency /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T13:12:37,580   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-11T13:12:37,589   reading manifest template 'MANIFEST.in'
2024-07-11T13:12:37,861   no previously-included directories found matching 'moleculekit/test-data'
2024-07-11T13:12:37,862   no previously-included directories found matching 'moleculekit/tests'
2024-07-11T13:12:37,863   no previously-included directories found matching 'package'
2024-07-11T13:12:37,863   adding license file 'LICENSE'
2024-07-11T13:12:37,882   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-11T13:12:37,893   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-07-11T13:12:37,893   !!

2024-07-11T13:12:37,894           ********************************************************************************
2024-07-11T13:12:37,894           ############################
2024-07-11T13:12:37,894           # Package would be ignored #
2024-07-11T13:12:37,894           ############################
2024-07-11T13:12:37,894           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-07-11T13:12:37,894           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,895           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,895           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-07-11T13:12:37,895           to the `packages` configuration field.

2024-07-11T13:12:37,895           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,895           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,895           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,896           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,896           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,896           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-07-11T13:12:37,896           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-07-11T13:12:37,896           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,896           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,897           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,897           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,897           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,897           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,898                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,898                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,898                 directory, all directories are treated like packages.
2024-07-11T13:12:37,898           ********************************************************************************

2024-07-11T13:12:37,898   !!
2024-07-11T13:12:37,898     check.warn(importable)
2024-07-11T13:12:37,899   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-07-11T13:12:37,899   !!

2024-07-11T13:12:37,899           ********************************************************************************
2024-07-11T13:12:37,899           ############################
2024-07-11T13:12:37,899           # Package would be ignored #
2024-07-11T13:12:37,899           ############################
2024-07-11T13:12:37,899           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-07-11T13:12:37,900           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,900           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,900           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-07-11T13:12:37,900           to the `packages` configuration field.

2024-07-11T13:12:37,900           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,900           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,900           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,901           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,901           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,901           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-07-11T13:12:37,901           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-07-11T13:12:37,901           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,902           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,902           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,902           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,902           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,902           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,903                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,903                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,903                 directory, all directories are treated like packages.
2024-07-11T13:12:37,903           ********************************************************************************

2024-07-11T13:12:37,903   !!
2024-07-11T13:12:37,903     check.warn(importable)
2024-07-11T13:12:37,903   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-07-11T13:12:37,904   !!

2024-07-11T13:12:37,904           ********************************************************************************
2024-07-11T13:12:37,904           ############################
2024-07-11T13:12:37,904           # Package would be ignored #
2024-07-11T13:12:37,904           ############################
2024-07-11T13:12:37,904           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-07-11T13:12:37,904           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,905           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,905           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-07-11T13:12:37,905           to the `packages` configuration field.

2024-07-11T13:12:37,905           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,905           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,905           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,905           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,906           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,906           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-07-11T13:12:37,906           already explicitly excluding 'moleculekit.cython_utils' via
2024-07-11T13:12:37,906           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,906           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,906           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,907           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,907           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,907           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,907                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,907                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,907                 directory, all directories are treated like packages.
2024-07-11T13:12:37,908           ********************************************************************************

2024-07-11T13:12:37,908   !!
2024-07-11T13:12:37,908     check.warn(importable)
2024-07-11T13:12:37,908   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-07-11T13:12:37,908   !!

2024-07-11T13:12:37,908           ********************************************************************************
2024-07-11T13:12:37,908           ############################
2024-07-11T13:12:37,908           # Package would be ignored #
2024-07-11T13:12:37,909           ############################
2024-07-11T13:12:37,909           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-07-11T13:12:37,909           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,909           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,909           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-07-11T13:12:37,909           to the `packages` configuration field.

2024-07-11T13:12:37,909           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,910           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,910           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,910           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,910           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,910           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-07-11T13:12:37,910           already explicitly excluding 'moleculekit.distance_utils' via
2024-07-11T13:12:37,911           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,911           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,911           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,911           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,911           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,911           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,912                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,912                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,912                 directory, all directories are treated like packages.
2024-07-11T13:12:37,912           ********************************************************************************

2024-07-11T13:12:37,912   !!
2024-07-11T13:12:37,912     check.warn(importable)
2024-07-11T13:12:37,912   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-07-11T13:12:37,912   !!

2024-07-11T13:12:37,913           ********************************************************************************
2024-07-11T13:12:37,913           ############################
2024-07-11T13:12:37,913           # Package would be ignored #
2024-07-11T13:12:37,913           ############################
2024-07-11T13:12:37,913           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-07-11T13:12:37,913           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,913           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,913           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-07-11T13:12:37,914           to the `packages` configuration field.

2024-07-11T13:12:37,914           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,914           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,914           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,914           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,914           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,915           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-07-11T13:12:37,915           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-07-11T13:12:37,915           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,915           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,915           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,915           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,915           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,916           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,916                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,916                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,916                 directory, all directories are treated like packages.
2024-07-11T13:12:37,916           ********************************************************************************

2024-07-11T13:12:37,917   !!
2024-07-11T13:12:37,917     check.warn(importable)
2024-07-11T13:12:37,917   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-07-11T13:12:37,917   !!

2024-07-11T13:12:37,917           ********************************************************************************
2024-07-11T13:12:37,917           ############################
2024-07-11T13:12:37,917           # Package would be ignored #
2024-07-11T13:12:37,917           ############################
2024-07-11T13:12:37,918           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-07-11T13:12:37,918           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,918           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,918           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-07-11T13:12:37,918           to the `packages` configuration field.

2024-07-11T13:12:37,918           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,919           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,919           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,919           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,919           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,919           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-07-11T13:12:37,919           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-07-11T13:12:37,920           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,920           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,920           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,920           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,920           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,920           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,921                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,921                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,921                 directory, all directories are treated like packages.
2024-07-11T13:12:37,921           ********************************************************************************

2024-07-11T13:12:37,921   !!
2024-07-11T13:12:37,921     check.warn(importable)
2024-07-11T13:12:37,921   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-07-11T13:12:37,922   !!

2024-07-11T13:12:37,922           ********************************************************************************
2024-07-11T13:12:37,922           ############################
2024-07-11T13:12:37,922           # Package would be ignored #
2024-07-11T13:12:37,922           ############################
2024-07-11T13:12:37,922           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-07-11T13:12:37,922           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,922           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,923           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-07-11T13:12:37,923           to the `packages` configuration field.

2024-07-11T13:12:37,923           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,923           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,923           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,923           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,924           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,924           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-07-11T13:12:37,924           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-07-11T13:12:37,924           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,924           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,924           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,924           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,925           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,925           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,925                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,925                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,925                 directory, all directories are treated like packages.
2024-07-11T13:12:37,925           ********************************************************************************

2024-07-11T13:12:37,926   !!
2024-07-11T13:12:37,926     check.warn(importable)
2024-07-11T13:12:37,926   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-07-11T13:12:37,926   !!

2024-07-11T13:12:37,926           ********************************************************************************
2024-07-11T13:12:37,926           ############################
2024-07-11T13:12:37,927           # Package would be ignored #
2024-07-11T13:12:37,927           ############################
2024-07-11T13:12:37,927           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-07-11T13:12:37,927           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,927           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,927           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-07-11T13:12:37,927           to the `packages` configuration field.

2024-07-11T13:12:37,928           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,928           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,928           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,928           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,928           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,928           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-07-11T13:12:37,929           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-07-11T13:12:37,929           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,929           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,929           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,929           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,929           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,930           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,930                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,930                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,930                 directory, all directories are treated like packages.
2024-07-11T13:12:37,930           ********************************************************************************

2024-07-11T13:12:37,930   !!
2024-07-11T13:12:37,930     check.warn(importable)
2024-07-11T13:12:37,931   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-07-11T13:12:37,931   !!

2024-07-11T13:12:37,931           ********************************************************************************
2024-07-11T13:12:37,931           ############################
2024-07-11T13:12:37,931           # Package would be ignored #
2024-07-11T13:12:37,931           ############################
2024-07-11T13:12:37,931           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-07-11T13:12:37,931           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,932           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,932           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-07-11T13:12:37,932           to the `packages` configuration field.

2024-07-11T13:12:37,932           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,932           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,932           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,933           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,933           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,933           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-07-11T13:12:37,933           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-07-11T13:12:37,933           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,934           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,934           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,934           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,935           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,935           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,935                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,936                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,936                 directory, all directories are treated like packages.
2024-07-11T13:12:37,936           ********************************************************************************

2024-07-11T13:12:37,936   !!
2024-07-11T13:12:37,937     check.warn(importable)
2024-07-11T13:12:37,937   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-07-11T13:12:37,937   !!

2024-07-11T13:12:37,937           ********************************************************************************
2024-07-11T13:12:37,937           ############################
2024-07-11T13:12:37,938           # Package would be ignored #
2024-07-11T13:12:37,938           ############################
2024-07-11T13:12:37,938           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-07-11T13:12:37,938           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,938           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,939           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-07-11T13:12:37,939           to the `packages` configuration field.

2024-07-11T13:12:37,939           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,939           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,939           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,940           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,940           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,940           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-07-11T13:12:37,941           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-07-11T13:12:37,941           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,941           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,941           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,941           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,942           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,942           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,942                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,943                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,943                 directory, all directories are treated like packages.
2024-07-11T13:12:37,943           ********************************************************************************

2024-07-11T13:12:37,943   !!
2024-07-11T13:12:37,943     check.warn(importable)
2024-07-11T13:12:37,944   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-07-11T13:12:37,944   !!

2024-07-11T13:12:37,944           ********************************************************************************
2024-07-11T13:12:37,944           ############################
2024-07-11T13:12:37,944           # Package would be ignored #
2024-07-11T13:12:37,945           ############################
2024-07-11T13:12:37,945           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-07-11T13:12:37,945           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,945           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,945           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-07-11T13:12:37,946           to the `packages` configuration field.

2024-07-11T13:12:37,946           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,946           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,946           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,947           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,947           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,947           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-07-11T13:12:37,947           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-07-11T13:12:37,948           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,948           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,948           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,948           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,949           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,949           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,949                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,949                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,950                 directory, all directories are treated like packages.
2024-07-11T13:12:37,950           ********************************************************************************

2024-07-11T13:12:37,950   !!
2024-07-11T13:12:37,950     check.warn(importable)
2024-07-11T13:12:37,950   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-07-11T13:12:37,951   !!

2024-07-11T13:12:37,951           ********************************************************************************
2024-07-11T13:12:37,951           ############################
2024-07-11T13:12:37,951           # Package would be ignored #
2024-07-11T13:12:37,951           ############################
2024-07-11T13:12:37,952           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-07-11T13:12:37,952           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,952           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,952           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-07-11T13:12:37,952           to the `packages` configuration field.

2024-07-11T13:12:37,953           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,953           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,953           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,953           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,954           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,954           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-07-11T13:12:37,954           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-07-11T13:12:37,954           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,954           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,955           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,955           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,955           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,956           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,956                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,956                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,956                 directory, all directories are treated like packages.
2024-07-11T13:12:37,957           ********************************************************************************

2024-07-11T13:12:37,957   !!
2024-07-11T13:12:37,957     check.warn(importable)
2024-07-11T13:12:37,957   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-07-11T13:12:37,957   !!

2024-07-11T13:12:37,958           ********************************************************************************
2024-07-11T13:12:37,958           ############################
2024-07-11T13:12:37,958           # Package would be ignored #
2024-07-11T13:12:37,958           ############################
2024-07-11T13:12:37,958           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-07-11T13:12:37,959           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,959           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,959           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-07-11T13:12:37,959           to the `packages` configuration field.

2024-07-11T13:12:37,960           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,960           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,960           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,960           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,961           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,961           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-07-11T13:12:37,961           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-07-11T13:12:37,961           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,962           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,962           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,962           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,962           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,963           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,963                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,963                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,964                 directory, all directories are treated like packages.
2024-07-11T13:12:37,964           ********************************************************************************

2024-07-11T13:12:37,964   !!
2024-07-11T13:12:37,964     check.warn(importable)
2024-07-11T13:12:37,965   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-07-11T13:12:37,965   !!

2024-07-11T13:12:37,965           ********************************************************************************
2024-07-11T13:12:37,965           ############################
2024-07-11T13:12:37,965           # Package would be ignored #
2024-07-11T13:12:37,966           ############################
2024-07-11T13:12:37,966           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-07-11T13:12:37,966           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,966           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,967           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-07-11T13:12:37,967           to the `packages` configuration field.

2024-07-11T13:12:37,967           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,967           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,968           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,968           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,968           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,969           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-07-11T13:12:37,969           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-07-11T13:12:37,969           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,969           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,969           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,970           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,970           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,971           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,971                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,971                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,971                 directory, all directories are treated like packages.
2024-07-11T13:12:37,971           ********************************************************************************

2024-07-11T13:12:37,972   !!
2024-07-11T13:12:37,972     check.warn(importable)
2024-07-11T13:12:37,972   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-07-11T13:12:37,972   !!

2024-07-11T13:12:37,973           ********************************************************************************
2024-07-11T13:12:37,973           ############################
2024-07-11T13:12:37,973           # Package would be ignored #
2024-07-11T13:12:37,973           ############################
2024-07-11T13:12:37,973           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-07-11T13:12:37,974           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,974           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,974           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-07-11T13:12:37,974           to the `packages` configuration field.

2024-07-11T13:12:37,975           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,975           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,975           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,976           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,976           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,976           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-07-11T13:12:37,977           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-07-11T13:12:37,977           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,977           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,977           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,977           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,978           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,978           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,979                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,979                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,979                 directory, all directories are treated like packages.
2024-07-11T13:12:37,979           ********************************************************************************

2024-07-11T13:12:37,979   !!
2024-07-11T13:12:37,980     check.warn(importable)
2024-07-11T13:12:37,980   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-07-11T13:12:37,980   !!

2024-07-11T13:12:37,980           ********************************************************************************
2024-07-11T13:12:37,980           ############################
2024-07-11T13:12:37,981           # Package would be ignored #
2024-07-11T13:12:37,981           ############################
2024-07-11T13:12:37,981           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-07-11T13:12:37,981           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,981           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,982           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-07-11T13:12:37,982           to the `packages` configuration field.

2024-07-11T13:12:37,982           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,982           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,982           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,983           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,983           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,983           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-07-11T13:12:37,984           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-07-11T13:12:37,984           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,984           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,984           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,984           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,985           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,985           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,985                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,986                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,986                 directory, all directories are treated like packages.
2024-07-11T13:12:37,986           ********************************************************************************

2024-07-11T13:12:37,986   !!
2024-07-11T13:12:37,987     check.warn(importable)
2024-07-11T13:12:37,987   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-07-11T13:12:37,987   !!

2024-07-11T13:12:37,987           ********************************************************************************
2024-07-11T13:12:37,988           ############################
2024-07-11T13:12:37,988           # Package would be ignored #
2024-07-11T13:12:37,988           ############################
2024-07-11T13:12:37,988           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-07-11T13:12:37,989           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,989           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,989           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-07-11T13:12:37,990           to the `packages` configuration field.

2024-07-11T13:12:37,990           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,990           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,991           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:37,991           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:37,991           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:37,992           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-07-11T13:12:37,992           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-07-11T13:12:37,992           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:37,992           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:37,993           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:37,993           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:37,993           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:37,994           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:37,994                 even if it does not contain any `.py` files.
2024-07-11T13:12:37,995                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:37,995                 directory, all directories are treated like packages.
2024-07-11T13:12:37,995           ********************************************************************************

2024-07-11T13:12:37,995   !!
2024-07-11T13:12:37,996     check.warn(importable)
2024-07-11T13:12:37,996   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-07-11T13:12:37,996   !!

2024-07-11T13:12:37,997           ********************************************************************************
2024-07-11T13:12:37,997           ############################
2024-07-11T13:12:37,997           # Package would be ignored #
2024-07-11T13:12:37,997           ############################
2024-07-11T13:12:37,997           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-07-11T13:12:37,998           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:37,998           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:37,998           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-07-11T13:12:37,999           to the `packages` configuration field.

2024-07-11T13:12:37,999           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:37,999           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:37,999           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:38,000           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:38,000           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:38,001           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-07-11T13:12:38,001           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-07-11T13:12:38,002           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:38,002           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:38,002           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:38,002           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:38,003           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:38,003           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:38,004                 even if it does not contain any `.py` files.
2024-07-11T13:12:38,004                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:38,004                 directory, all directories are treated like packages.
2024-07-11T13:12:38,004           ********************************************************************************

2024-07-11T13:12:38,005   !!
2024-07-11T13:12:38,005     check.warn(importable)
2024-07-11T13:12:38,005   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-07-11T13:12:38,005   !!

2024-07-11T13:12:38,006           ********************************************************************************
2024-07-11T13:12:38,006           ############################
2024-07-11T13:12:38,006           # Package would be ignored #
2024-07-11T13:12:38,007           ############################
2024-07-11T13:12:38,007           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-07-11T13:12:38,007           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:38,007           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:38,008           package, please make sure that 'moleculekit.share' is explicitly added
2024-07-11T13:12:38,008           to the `packages` configuration field.

2024-07-11T13:12:38,008           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:38,008           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:38,008           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:38,009           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:38,009           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:38,009           If you don't want 'moleculekit.share' to be distributed and are
2024-07-11T13:12:38,010           already explicitly excluding 'moleculekit.share' via
2024-07-11T13:12:38,010           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:38,010           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:38,010           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:38,011           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:38,011           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:38,012           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:38,012                 even if it does not contain any `.py` files.
2024-07-11T13:12:38,012                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:38,012                 directory, all directories are treated like packages.
2024-07-11T13:12:38,012           ********************************************************************************

2024-07-11T13:12:38,013   !!
2024-07-11T13:12:38,013     check.warn(importable)
2024-07-11T13:12:38,013   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-07-11T13:12:38,013   !!

2024-07-11T13:12:38,014           ********************************************************************************
2024-07-11T13:12:38,014           ############################
2024-07-11T13:12:38,014           # Package would be ignored #
2024-07-11T13:12:38,014           ############################
2024-07-11T13:12:38,014           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-07-11T13:12:38,015           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:38,015           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:38,015           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-07-11T13:12:38,015           to the `packages` configuration field.

2024-07-11T13:12:38,016           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:38,016           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:38,016           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:38,016           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:38,017           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:38,017           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-07-11T13:12:38,017           already explicitly excluding 'moleculekit.share.atomselect' via
2024-07-11T13:12:38,017           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:38,018           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:38,018           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:38,018           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:38,019           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:38,019           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:38,019                 even if it does not contain any `.py` files.
2024-07-11T13:12:38,019                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:38,020                 directory, all directories are treated like packages.
2024-07-11T13:12:38,020           ********************************************************************************

2024-07-11T13:12:38,020   !!
2024-07-11T13:12:38,020     check.warn(importable)
2024-07-11T13:12:38,020   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-07-11T13:12:38,021   !!

2024-07-11T13:12:38,021           ********************************************************************************
2024-07-11T13:12:38,021           ############################
2024-07-11T13:12:38,021           # Package would be ignored #
2024-07-11T13:12:38,021           ############################
2024-07-11T13:12:38,022           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-07-11T13:12:38,022           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:38,022           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:38,022           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-07-11T13:12:38,023           to the `packages` configuration field.

2024-07-11T13:12:38,023           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:38,023           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:38,023           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:38,024           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:38,024           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:38,024           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-07-11T13:12:38,025           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-07-11T13:12:38,025           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:38,025           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:38,025           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:38,026           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:38,026           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:38,027           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:38,027                 even if it does not contain any `.py` files.
2024-07-11T13:12:38,027                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:38,027                 directory, all directories are treated like packages.
2024-07-11T13:12:38,027           ********************************************************************************

2024-07-11T13:12:38,028   !!
2024-07-11T13:12:38,028     check.warn(importable)
2024-07-11T13:12:38,028   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-07-11T13:12:38,028   !!

2024-07-11T13:12:38,029           ********************************************************************************
2024-07-11T13:12:38,029           ############################
2024-07-11T13:12:38,029           # Package would be ignored #
2024-07-11T13:12:38,029           ############################
2024-07-11T13:12:38,029           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-07-11T13:12:38,030           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:38,030           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:38,030           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-07-11T13:12:38,030           to the `packages` configuration field.

2024-07-11T13:12:38,031           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:38,031           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:38,031           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:38,031           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:38,032           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:38,032           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-07-11T13:12:38,032           already explicitly excluding 'moleculekit.tmalign' via
2024-07-11T13:12:38,032           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:38,033           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:38,033           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:38,033           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:38,034           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:38,034           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:38,034                 even if it does not contain any `.py` files.
2024-07-11T13:12:38,035                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:38,035                 directory, all directories are treated like packages.
2024-07-11T13:12:38,035           ********************************************************************************

2024-07-11T13:12:38,035   !!
2024-07-11T13:12:38,035     check.warn(importable)
2024-07-11T13:12:38,035   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-07-11T13:12:38,036   !!

2024-07-11T13:12:38,036           ********************************************************************************
2024-07-11T13:12:38,036           ############################
2024-07-11T13:12:38,036           # Package would be ignored #
2024-07-11T13:12:38,036           ############################
2024-07-11T13:12:38,036           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-07-11T13:12:38,036           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:38,037           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:38,037           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-07-11T13:12:38,037           to the `packages` configuration field.

2024-07-11T13:12:38,037           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:38,037           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:38,038           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:38,038           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:38,038           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:38,038           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-07-11T13:12:38,038           already explicitly excluding 'moleculekit.tmalign.include' via
2024-07-11T13:12:38,039           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:38,039           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:38,039           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:38,039           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:38,039           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:38,040           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:38,040                 even if it does not contain any `.py` files.
2024-07-11T13:12:38,040                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:38,040                 directory, all directories are treated like packages.
2024-07-11T13:12:38,040           ********************************************************************************

2024-07-11T13:12:38,041   !!
2024-07-11T13:12:38,041     check.warn(importable)
2024-07-11T13:12:38,041   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-07-11T13:12:38,041   !!

2024-07-11T13:12:38,041           ********************************************************************************
2024-07-11T13:12:38,041           ############################
2024-07-11T13:12:38,041           # Package would be ignored #
2024-07-11T13:12:38,042           ############################
2024-07-11T13:12:38,042           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-07-11T13:12:38,042           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:38,042           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:38,042           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-07-11T13:12:38,042           to the `packages` configuration field.

2024-07-11T13:12:38,043           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:38,043           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:38,043           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:38,043           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:38,043           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:38,044           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-07-11T13:12:38,044           already explicitly excluding 'moleculekit.tmalign.src' via
2024-07-11T13:12:38,044           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:38,044           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:38,044           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:38,044           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:38,045           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:38,045           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:38,045                 even if it does not contain any `.py` files.
2024-07-11T13:12:38,045                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:38,045                 directory, all directories are treated like packages.
2024-07-11T13:12:38,046           ********************************************************************************

2024-07-11T13:12:38,046   !!
2024-07-11T13:12:38,046     check.warn(importable)
2024-07-11T13:12:38,046   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-07-11T13:12:38,046   !!

2024-07-11T13:12:38,047           ********************************************************************************
2024-07-11T13:12:38,047           ############################
2024-07-11T13:12:38,047           # Package would be ignored #
2024-07-11T13:12:38,047           ############################
2024-07-11T13:12:38,047           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-07-11T13:12:38,047           but it is absent from setuptools' `packages` configuration.

2024-07-11T13:12:38,047           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T13:12:38,047           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-07-11T13:12:38,048           to the `packages` configuration field.

2024-07-11T13:12:38,048           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T13:12:38,048           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T13:12:38,048           instead of `find_packages(...)`/`find:`).

2024-07-11T13:12:38,048           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T13:12:38,049           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T13:12:38,049           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-07-11T13:12:38,049           already explicitly excluding 'moleculekit.wrapping' via
2024-07-11T13:12:38,049           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T13:12:38,049           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T13:12:38,049           combination with a more fine grained `package-data` configuration.

2024-07-11T13:12:38,050           You can read more about "package data files" on setuptools documentation page:

2024-07-11T13:12:38,050           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T13:12:38,050           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T13:12:38,050                 even if it does not contain any `.py` files.
2024-07-11T13:12:38,050                 On the other hand, currently there is no concept of package data
2024-07-11T13:12:38,051                 directory, all directories are treated like packages.
2024-07-11T13:12:38,051           ********************************************************************************

2024-07-11T13:12:38,051   !!
2024-07-11T13:12:38,051     check.warn(importable)
2024-07-11T13:12:38,051   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:38,051   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:38,051   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-11T13:12:38,052   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-11T13:12:38,052   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-11T13:12:38,052   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-11T13:12:38,052   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-11T13:12:38,059   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-11T13:12:38,062   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-11T13:12:38,063   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-11T13:12:38,081   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-11T13:12:38,083   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-11T13:12:38,084   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-11T13:12:38,107   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-11T13:12:38,110   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-11T13:12:38,111   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-11T13:12:38,130   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-11T13:12:38,131   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-11T13:12:38,132   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-11T13:12:38,135   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-11T13:12:38,137   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-11T13:12:38,337   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-07-11T13:12:38,337   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-07-11T13:12:38,340   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-07-11T13:12:38,340   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,342   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,344   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,346   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,348   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,350   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,352   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,354   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,357   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,359   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,361   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,363   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,366   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,368   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,370   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,372   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,374   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,377   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,380   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,382   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,384   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,386   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,389   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,391   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,393   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,395   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,397   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,399   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,402   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,404   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,406   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,408   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,410   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,412   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,414   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,416   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,419   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,421   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,424   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,426   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,428   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,430   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,432   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,434   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,436   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,438   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,441   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,443   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,445   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,447   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,450   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,452   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,454   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,456   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,458   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,460   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,462   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,464   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,466   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,469   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,471   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,473   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,475   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,477   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,479   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,481   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,483   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,485   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,487   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,490   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,492   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,494   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,496   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,498   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,500   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,502   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,504   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,506   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,508   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,511   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,513   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,515   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,517   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,519   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,521   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,523   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,525   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,527   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,530   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,531   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,534   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,536   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,538   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,540   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,543   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,545   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,547   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,549   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,551   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,553   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,555   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,557   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,559   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,561   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,563   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,564   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,567   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,568   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,571   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,572   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,575   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,577   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,579   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,581   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,583   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,585   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,587   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,589   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,591   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,593   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,595   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,598   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,600   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,602   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,604   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,606   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,608   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,610   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,612   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,614   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,617   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,618   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,620   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,622   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,624   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,627   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,629   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,631   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,633   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,635   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,637   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,639   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,641   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,643   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,645   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,647   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,649   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,651   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,653   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,655   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,658   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,659   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,662   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,663   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,666   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,668   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,670   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,672   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,675   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,677   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,679   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,681   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,683   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,685   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,687   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,689   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,691   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,693   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,695   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,697   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,699   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,702   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,704   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,706   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,708   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,710   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T13:12:38,712   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T13:12:38,713   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T13:12:38,733   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T13:12:38,735   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T13:12:38,737   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-07-11T13:12:38,738   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-07-11T13:12:38,740   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-11T13:12:38,741   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-11T13:12:38,748   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-11T13:12:38,749   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-11T13:12:38,778   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-11T13:12:38,780   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T13:12:38,781   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T13:12:38,807   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T13:12:38,810   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T13:12:38,812   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-11T13:12:38,819   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-11T13:12:38,821   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-11T13:12:38,824   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-11T13:12:38,828   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-11T13:12:38,829   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-11T13:12:38,832   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T13:12:38,833   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T13:12:38,856   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T13:12:38,858   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T13:12:38,860   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T13:12:38,861   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T13:12:38,863   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T13:12:38,866   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T13:12:38,868   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T13:12:38,870   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T13:12:38,873   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-11T13:12:38,874   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-11T13:12:38,878   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T13:12:38,879   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T13:12:38,908   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T13:12:38,911   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T13:12:38,913   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T13:12:38,915   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T13:12:38,938   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T13:12:38,940   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T13:12:38,942   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T13:12:38,943   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T13:12:38,946   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T13:12:38,948   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T13:12:38,952   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T13:12:38,954   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T13:12:38,957   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T13:12:38,959   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T13:12:38,960   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T13:12:38,963   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T13:12:38,967   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T13:12:38,969   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T13:12:38,972   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T13:12:38,975   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-11T13:12:38,976   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-11T13:12:39,006   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-11T13:12:39,008   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-11T13:12:39,010   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-11T13:12:39,034   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-11T13:12:39,036   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-11T13:12:39,037   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-11T13:12:39,059   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-11T13:12:39,061   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-11T13:12:39,062   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-11T13:12:39,083   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-11T13:12:39,096   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-07-11T13:12:39,096   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.9.0'
2024-07-11T13:12:39,096   running build_ext
2024-07-11T13:12:39,108   building 'moleculekit.interactions.hbonds' extension
2024-07-11T13:12:39,109   creating build/temp.linux-armv7l-cpython-39
2024-07-11T13:12:39,110   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-07-11T13:12:39,111   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-11T13:12:39,112   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-11T13:12:39,113   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-07-11T13:12:39,373   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:12:39,373                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:12:39,373                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:12:39,373                    from moleculekit/interactions/hbonds/hbonds.cpp:1265:
2024-07-11T13:12:39,373   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:12:39,374      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:12:39,374         |  ^~~~~~~
2024-07-11T13:12:39,819   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T13:12:39,820                    from moleculekit/interactions/hbonds/hbonds.cpp:1269:
2024-07-11T13:12:39,820   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T13:12:39,820   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T13:12:39,820     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T13:12:39,820         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T13:13:02,400   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-07-11T13:13:02,401   moleculekit/interactions/hbonds/hbonds.cpp:21469:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:13:02,401   21469 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-07-11T13:13:02,401         |                                                    ^~~~~~~~~~~~~~~
2024-07-11T13:13:02,401   moleculekit/interactions/hbonds/hbonds.cpp:20486:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-07-11T13:13:02,402   20486 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-07-11T13:13:02,402         |                                                         ^~~~~~~~~~~~~~~
2024-07-11T13:13:05,572   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:13:05,895   building 'moleculekit.interactions.pipi' extension
2024-07-11T13:13:05,897   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-11T13:13:05,898   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-07-11T13:13:06,131   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:13:06,132                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:13:06,132                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:13:06,132                    from moleculekit/interactions/pipi/pipi.cpp:1265:
2024-07-11T13:13:06,132   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:13:06,132      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:13:06,132         |  ^~~~~~~
2024-07-11T13:13:06,567   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T13:13:06,567                    from moleculekit/interactions/pipi/pipi.cpp:1269:
2024-07-11T13:13:06,567   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T13:13:06,568   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T13:13:06,568     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T13:13:06,568         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T13:13:34,356   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:13:34,683   building 'moleculekit.interactions.cationpi' extension
2024-07-11T13:13:34,684   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-11T13:13:34,685   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-07-11T13:13:34,926   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:13:34,926                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:13:34,927                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:13:34,927                    from moleculekit/interactions/cationpi/cationpi.cpp:1265:
2024-07-11T13:13:34,927   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:13:34,927      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:13:34,927         |  ^~~~~~~
2024-07-11T13:13:35,363   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T13:13:35,363                    from moleculekit/interactions/cationpi/cationpi.cpp:1269:
2024-07-11T13:13:35,364   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T13:13:35,364   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T13:13:35,364     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T13:13:35,364         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:02,933   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:14:03,254   building 'moleculekit.interactions.sigmahole' extension
2024-07-11T13:14:03,255   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-11T13:14:03,256   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-07-11T13:14:03,524   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:14:03,524                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:14:03,524                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:14:03,524                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1265:
2024-07-11T13:14:03,524   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:14:03,524      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:14:03,525         |  ^~~~~~~
2024-07-11T13:14:03,956   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T13:14:03,957                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1269:
2024-07-11T13:14:03,957   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T13:14:03,957   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T13:14:03,957     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T13:14:03,957         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:30,937   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:14:31,252   building 'moleculekit.wrapping' extension
2024-07-11T13:14:31,253   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-11T13:14:31,254   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-07-11T13:14:31,485   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:14:31,485                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:14:31,485                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:14:31,485                    from moleculekit/wrapping/wrapping.cpp:1265:
2024-07-11T13:14:31,485   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:14:31,486      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:14:31,486         |  ^~~~~~~
2024-07-11T13:14:31,925   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T13:14:31,925                    from moleculekit/wrapping/wrapping.cpp:1269:
2024-07-11T13:14:31,925   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T13:14:31,925   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T13:14:31,925     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T13:14:31,926         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:57,445   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:14:57,661   building 'moleculekit.bondguesser_utils' extension
2024-07-11T13:14:57,662   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-11T13:14:57,662   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-07-11T13:14:57,902   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:14:57,903                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:14:57,903                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:14:57,903                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1265:
2024-07-11T13:14:57,903   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:14:57,903      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:14:57,903         |  ^~~~~~~
2024-07-11T13:14:58,341   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T13:14:58,341                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1269:
2024-07-11T13:14:58,341   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T13:14:58,341   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T13:14:58,342     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T13:14:58,342         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,452   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-07-11T13:14:59,453   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20255:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-11T13:14:59,453   20255 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-07-11T13:14:59,453         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T13:14:59,453   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20267:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-11T13:14:59,453   20267 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-07-11T13:14:59,453         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T13:14:59,454   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20279:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-11T13:14:59,454   20279 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-07-11T13:14:59,454         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T13:14:59,454   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20318:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,454   20318 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T13:14:59,454         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,454   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20357:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,455   20357 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T13:14:59,455         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,455   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20396:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,455   20396 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T13:14:59,455         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,456   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20435:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,456   20435 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T13:14:59,456         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,456   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20441:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,456   20441 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T13:14:59,456         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,457   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20482:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,457   20482 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T13:14:59,457         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,457   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20488:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,457   20488 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T13:14:59,457         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,457   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20529:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,458   20529 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T13:14:59,458         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,458   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20535:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,458   20535 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T13:14:59,458         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,458   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20576:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,458   20576 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T13:14:59,459         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,459   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20629:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,459   20629 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T13:14:59,459         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,459   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20676:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,460   20676 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T13:14:59,460         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,460   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20717:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,460   20717 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T13:14:59,460         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,460   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20723:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,461   20723 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T13:14:59,461         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,461   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20729:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,461   20729 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T13:14:59,461         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,461   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20776:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,461   20776 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T13:14:59,462         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,462   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20782:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,462   20782 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T13:14:59,462         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,462   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20823:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,462   20823 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T13:14:59,462         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,463   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20835:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,463   20835 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T13:14:59,463         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,463   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20888:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T13:14:59,463   20888 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T13:14:59,463         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,483   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-07-11T13:14:59,483   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21510:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T13:14:59,483   21510 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-07-11T13:14:59,483         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-07-11T13:14:59,483   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21547:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T13:14:59,483   21547 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-07-11T13:14:59,484         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-07-11T13:15:22,527   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:15:22,825   building 'moleculekit.atomselect_utils' extension
2024-07-11T13:15:22,826   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-11T13:15:22,827   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-07-11T13:15:23,097   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:15:23,097                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:15:23,098                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:15:23,098                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1282:
2024-07-11T13:15:23,098   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:15:23,098      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:15:23,098         |  ^~~~~~~
2024-07-11T13:15:23,556   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T13:15:23,556                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1286:
2024-07-11T13:15:23,556   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T13:15:23,556   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T13:15:23,557     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T13:15:23,557         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T13:15:24,821   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-07-11T13:15:24,822   moleculekit/atomselect_utils/atomselect_utils.cpp:23709:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T13:15:24,822   23709 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-07-11T13:15:24,822         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-07-11T13:15:24,827   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-07-11T13:15:24,827   moleculekit/atomselect_utils/atomselect_utils.cpp:23961:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T13:15:24,827   23961 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-07-11T13:15:24,828         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T13:15:24,832   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-07-11T13:15:24,833   moleculekit/atomselect_utils/atomselect_utils.cpp:24228:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T13:15:24,833   24228 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-07-11T13:15:24,833         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T13:15:55,083   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:15:55,405   building 'moleculekit.distance_utils' extension
2024-07-11T13:15:55,406   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-11T13:15:55,407   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-07-11T13:15:55,645   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:15:55,645                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:15:55,645                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:15:55,646                    from moleculekit/distance_utils/distance_utils.cpp:1265:
2024-07-11T13:15:55,646   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:15:55,646      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:15:55,646         |  ^~~~~~~
2024-07-11T13:15:56,133   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T13:15:56,133                    from moleculekit/distance_utils/distance_utils.cpp:1269:
2024-07-11T13:15:56,134   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T13:15:56,134   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T13:15:56,134     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T13:15:56,134         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T13:15:57,323   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-07-11T13:15:57,323   moleculekit/distance_utils/distance_utils.cpp:21813:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T13:15:57,323   21813 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-07-11T13:15:57,324         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T13:15:57,324   moleculekit/distance_utils/distance_utils.cpp:21825:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T13:15:57,324   21825 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-07-11T13:15:57,324         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T13:16:30,456   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:16:30,798   building 'moleculekit.occupancy_utils' extension
2024-07-11T13:16:30,799   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-11T13:16:30,800   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-07-11T13:16:31,037   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:16:31,037                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:16:31,038                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:16:31,038                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1265:
2024-07-11T13:16:31,038   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:16:31,038      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:16:31,038         |  ^~~~~~~
2024-07-11T13:16:31,468   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T13:16:31,469                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1269:
2024-07-11T13:16:31,469   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T13:16:31,469   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T13:16:31,469     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T13:16:31,469         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T13:16:54,344   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:16:54,562   building 'moleculekit.cython_utils' extension
2024-07-11T13:16:54,562   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-11T13:16:54,563   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-07-11T13:16:54,801   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:16:54,801                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:16:54,801                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:16:54,801                    from moleculekit/cython_utils/cython_utils.cpp:1265:
2024-07-11T13:16:54,802   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:16:54,802      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:16:54,802         |  ^~~~~~~
2024-07-11T13:16:55,233   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T13:16:55,233                    from moleculekit/cython_utils/cython_utils.cpp:1269:
2024-07-11T13:16:55,234   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T13:16:55,234   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T13:16:55,234     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T13:16:55,234         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T13:17:20,215   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:17:20,524   building 'moleculekit.xtc' extension
2024-07-11T13:17:20,525   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T13:17:20,526   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T13:17:20,527   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T13:17:20,528   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-07-11T13:17:20,768   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,769      66 |  "OK",
2024-07-11T13:17:20,769         |  ^~~~
2024-07-11T13:17:20,769   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,769      67 |  "Header",
2024-07-11T13:17:20,769         |  ^~~~~~~~
2024-07-11T13:17:20,769   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,769      68 |  "String",
2024-07-11T13:17:20,770         |  ^~~~~~~~
2024-07-11T13:17:20,770   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,770      69 |  "Double",
2024-07-11T13:17:20,770         |  ^~~~~~~~
2024-07-11T13:17:20,770   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,770      70 |  "Integer",
2024-07-11T13:17:20,771         |  ^~~~~~~~~
2024-07-11T13:17:20,771   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,771      71 |  "Float",
2024-07-11T13:17:20,771         |  ^~~~~~~
2024-07-11T13:17:20,771   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,771      72 |  "Unsigned integer",
2024-07-11T13:17:20,771         |  ^~~~~~~~~~~~~~~~~~
2024-07-11T13:17:20,772   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,772      73 |  "Compressed 3D coordinate",
2024-07-11T13:17:20,772         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:17:20,772   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,772      74 |  "Closing file",
2024-07-11T13:17:20,772         |  ^~~~~~~~~~~~~~
2024-07-11T13:17:20,772   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,773      75 |  "Magic number",
2024-07-11T13:17:20,773         |  ^~~~~~~~~~~~~~
2024-07-11T13:17:20,773   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,773      76 |  "Not enough memory",
2024-07-11T13:17:20,773         |  ^~~~~~~~~~~~~~~~~~~
2024-07-11T13:17:20,773   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,773      77 |  "End of file",
2024-07-11T13:17:20,774         |  ^~~~~~~~~~~~~
2024-07-11T13:17:20,774   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:20,774      78 |  "File not found"
2024-07-11T13:17:20,774         |  ^~~~~~~~~~~~~~~~
2024-07-11T13:17:20,778   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-07-11T13:17:20,778   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,778     459 |     while (size >= num && num_of_bits < 32)
2024-07-11T13:17:20,778         |            ~~~~~^~~~~~
2024-07-11T13:17:20,778   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-07-11T13:17:20,779   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:20,779     505 |     while (bytes[num_of_bytes] >= num)
2024-07-11T13:17:20,779         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-11T13:17:20,781   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-07-11T13:17:20,781   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,781     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-07-11T13:17:20,781         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-07-11T13:17:20,782   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,782     616 |   for (i = 0; i < num_of_bytes; i++)
2024-07-11T13:17:20,782         |               ~~^~~~~~~~~~~~~~
2024-07-11T13:17:20,782   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,782     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-07-11T13:17:20,782         |               ~~^~~~~~~~~~~~~~~~
2024-07-11T13:17:20,783   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-07-11T13:17:20,783   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:20,783     664 |   if (lastbits < num_of_bits)
2024-07-11T13:17:20,783         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-07-11T13:17:20,786   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-07-11T13:17:20,786   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:20,787     785 |  if(size3>xfp->buf1size)
2024-07-11T13:17:20,787         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T13:17:20,788   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:20,788     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T13:17:20,788         |                   ^
2024-07-11T13:17:20,791   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,791     932 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T13:17:20,791         |        ~~~~~~~~~^~~~~~~~
2024-07-11T13:17:20,791   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,791     935 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T13:17:20,792         |        ~~~~~~~~~^~~~~~~~
2024-07-11T13:17:20,792   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,792     938 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T13:17:20,792         |        ~~~~~~~~~^~~~~~~~
2024-07-11T13:17:20,792   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,792     945 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T13:17:20,792         |        ~~~~~~~~~^~~~~~~~
2024-07-11T13:17:20,793   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,793     948 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T13:17:20,793         |        ~~~~~~~~~^~~~~~~~
2024-07-11T13:17:20,793   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,793     951 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T13:17:20,793         |        ~~~~~~~~~^~~~~~~~
2024-07-11T13:17:20,793   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-11T13:17:20,794     756 |  int smallidx,  minidx, maxidx;
2024-07-11T13:17:20,794         |                 ^~~~~~
2024-07-11T13:17:20,794   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-11T13:17:20,794     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-11T13:17:20,794         |                         ^~~~~~
2024-07-11T13:17:20,794   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-11T13:17:20,794     763 |  int errval=1;
2024-07-11T13:17:20,794         |      ^~~~~~
2024-07-11T13:17:20,795   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-07-11T13:17:20,795   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:20,795    1011 |  if(size3>xfp->buf1size)
2024-07-11T13:17:20,796         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T13:17:20,797   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,797    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T13:17:20,798         |                     ~~~~~~~~^~~~~~~
2024-07-11T13:17:20,798   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,798    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T13:17:20,798         |                    ~~~~~~~~^~~~~~~
2024-07-11T13:17:20,798   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,799    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T13:17:20,799         |                    ~~~~~~~~^~~~~~~
2024-07-11T13:17:20,800   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,800    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-07-11T13:17:20,800         |                  ^
2024-07-11T13:17:20,801   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:20,801    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T13:17:20,801         |                   ^
2024-07-11T13:17:20,804   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,805    1275 |  if(tmp==(unsigned int)buf2[0])
2024-07-11T13:17:20,805         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:17:20,805   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-11T13:17:20,805    1001 |  int errval;
2024-07-11T13:17:20,805         |      ^~~~~~
2024-07-11T13:17:20,808   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-07-11T13:17:20,808   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:20,808    1316 |  if(size3>xfp->buf1size)
2024-07-11T13:17:20,808         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T13:17:20,810   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:20,810    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T13:17:20,810         |                   ^
2024-07-11T13:17:20,812   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-11T13:17:20,813    1289 |  int smallidx,  maxidx, minidx;
2024-07-11T13:17:20,813         |                         ^~~~~~
2024-07-11T13:17:20,813   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-11T13:17:20,813    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-11T13:17:20,813         |                         ^~~~~~
2024-07-11T13:17:20,813   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-11T13:17:20,814    1297 |  int errval=1;
2024-07-11T13:17:20,814         |      ^~~~~~
2024-07-11T13:17:20,815   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-07-11T13:17:20,815   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:20,815    1513 |  if(size3>xfp->buf1size) {
2024-07-11T13:17:20,815         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T13:17:20,819   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,819    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-07-11T13:17:20,820         |                  ^
2024-07-11T13:17:20,820   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:20,820    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T13:17:20,820         |                   ^
2024-07-11T13:17:20,823   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:20,824    1743 |  if(tmp==(unsigned int)buf2[0])
2024-07-11T13:17:20,824         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:17:20,824   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-11T13:17:20,824    1504 |  int errval=1;
2024-07-11T13:17:20,824         |      ^~~~~~
2024-07-11T13:17:23,076   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-07-11T13:17:23,326   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-07-11T13:17:23,906   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-07-11T13:17:23,907   moleculekit/fileformats/xtc/src/xtc.cpp:234:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T13:17:23,907     234 |   for (aidx = 0; aidx < natoms; aidx++)
2024-07-11T13:17:23,907         |                  ~~~~~^~~~~~~~
2024-07-11T13:17:23,913   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-07-11T13:17:23,913   moleculekit/fileformats/xtc/src/xtc.cpp:436:16: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T13:17:23,913     436 |  for (f = 0; f < nframes; f++)
2024-07-11T13:17:23,914         |              ~~^~~~~~~~~
2024-07-11T13:17:23,914   moleculekit/fileformats/xtc/src/xtc.cpp:451:17: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T13:17:23,914     451 |   for (i = 0; i < natoms; i++)
2024-07-11T13:17:23,914         |               ~~^~~~~~~~
2024-07-11T13:17:23,916   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-07-11T13:17:23,917   moleculekit/fileformats/xtc/src/xtc.cpp:541:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T13:17:23,917     541 |    for (aidx = 0; aidx < natoms; aidx++)
2024-07-11T13:17:23,917         |                   ~~~~~^~~~~~~~
2024-07-11T13:17:23,919   moleculekit/fileformats/xtc/src/xtc.cpp:610:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T13:17:23,919     610 |    for (aidx = 0; aidx < natoms; aidx++)
2024-07-11T13:17:23,919         |                   ~~~~~^~~~~~~~
2024-07-11T13:17:24,698   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-07-11T13:17:24,954   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:17:24,954                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:17:24,954                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:17:24,955                    from moleculekit/fileformats/xtc/xtc.cpp:1269:
2024-07-11T13:17:24,955   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:17:24,955      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:17:24,955         |  ^~~~~~~
2024-07-11T13:17:25,391   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T13:17:25,391                    from moleculekit/fileformats/xtc/xtc.cpp:1273:
2024-07-11T13:17:25,391   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T13:17:25,391   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T13:17:25,392     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T13:17:25,392         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T13:17:45,103   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:17:45,417   building 'moleculekit.trr' extension
2024-07-11T13:17:45,419   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-07-11T13:17:45,537   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-07-11T13:17:45,778   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,778      66 |  "OK",
2024-07-11T13:17:45,778         |  ^~~~
2024-07-11T13:17:45,779   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,779      67 |  "Header",
2024-07-11T13:17:45,779         |  ^~~~~~~~
2024-07-11T13:17:45,779   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,780      68 |  "String",
2024-07-11T13:17:45,780         |  ^~~~~~~~
2024-07-11T13:17:45,780   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,780      69 |  "Double",
2024-07-11T13:17:45,780         |  ^~~~~~~~
2024-07-11T13:17:45,781   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,781      70 |  "Integer",
2024-07-11T13:17:45,781         |  ^~~~~~~~~
2024-07-11T13:17:45,781   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,781      71 |  "Float",
2024-07-11T13:17:45,782         |  ^~~~~~~
2024-07-11T13:17:45,782   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,782      72 |  "Unsigned integer",
2024-07-11T13:17:45,782         |  ^~~~~~~~~~~~~~~~~~
2024-07-11T13:17:45,782   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,783      73 |  "Compressed 3D coordinate",
2024-07-11T13:17:45,783         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:17:45,783   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,783      74 |  "Closing file",
2024-07-11T13:17:45,783         |  ^~~~~~~~~~~~~~
2024-07-11T13:17:45,784   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,784      75 |  "Magic number",
2024-07-11T13:17:45,784         |  ^~~~~~~~~~~~~~
2024-07-11T13:17:45,784   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,784      76 |  "Not enough memory",
2024-07-11T13:17:45,785         |  ^~~~~~~~~~~~~~~~~~~
2024-07-11T13:17:45,785   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,785      77 |  "End of file",
2024-07-11T13:17:45,785         |  ^~~~~~~~~~~~~
2024-07-11T13:17:45,785   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T13:17:45,786      78 |  "File not found"
2024-07-11T13:17:45,786         |  ^~~~~~~~~~~~~~~~
2024-07-11T13:17:45,791   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-07-11T13:17:45,792   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,792     459 |     while (size >= num && num_of_bits < 32)
2024-07-11T13:17:45,792         |            ~~~~~^~~~~~
2024-07-11T13:17:45,793   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-07-11T13:17:45,793   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:45,793     505 |     while (bytes[num_of_bytes] >= num)
2024-07-11T13:17:45,793         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-11T13:17:45,796   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-07-11T13:17:45,796   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,797     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-07-11T13:17:45,797         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-07-11T13:17:45,797   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,797     616 |   for (i = 0; i < num_of_bytes; i++)
2024-07-11T13:17:45,797         |               ~~^~~~~~~~~~~~~~
2024-07-11T13:17:45,798   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,798     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-07-11T13:17:45,798         |               ~~^~~~~~~~~~~~~~~~
2024-07-11T13:17:45,798   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-07-11T13:17:45,799   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:45,799     664 |   if (lastbits < num_of_bits)
2024-07-11T13:17:45,799         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-07-11T13:17:45,803   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-07-11T13:17:45,804   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:45,804     785 |  if(size3>xfp->buf1size)
2024-07-11T13:17:45,804         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T13:17:45,806   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:45,807     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T13:17:45,807         |                   ^
2024-07-11T13:17:45,810   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,810     932 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T13:17:45,811         |        ~~~~~~~~~^~~~~~~~
2024-07-11T13:17:45,811   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,811     935 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T13:17:45,811         |        ~~~~~~~~~^~~~~~~~
2024-07-11T13:17:45,811   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,812     938 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T13:17:45,812         |        ~~~~~~~~~^~~~~~~~
2024-07-11T13:17:45,812   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,812     945 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T13:17:45,812         |        ~~~~~~~~~^~~~~~~~
2024-07-11T13:17:45,813   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,813     948 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T13:17:45,813         |        ~~~~~~~~~^~~~~~~~
2024-07-11T13:17:45,813   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,813     951 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T13:17:45,814         |        ~~~~~~~~~^~~~~~~~
2024-07-11T13:17:45,814   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-11T13:17:45,814     756 |  int smallidx,  minidx, maxidx;
2024-07-11T13:17:45,814         |                 ^~~~~~
2024-07-11T13:17:45,814   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-11T13:17:45,815     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-11T13:17:45,815         |                         ^~~~~~
2024-07-11T13:17:45,815   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-11T13:17:45,815     763 |  int errval=1;
2024-07-11T13:17:45,815         |      ^~~~~~
2024-07-11T13:17:45,816   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-07-11T13:17:45,817   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:45,817    1011 |  if(size3>xfp->buf1size)
2024-07-11T13:17:45,817         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T13:17:45,819   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,820    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T13:17:45,820         |                     ~~~~~~~~^~~~~~~
2024-07-11T13:17:45,820   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,820    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T13:17:45,821         |                    ~~~~~~~~^~~~~~~
2024-07-11T13:17:45,821   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,821    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T13:17:45,822         |                    ~~~~~~~~^~~~~~~
2024-07-11T13:17:45,823   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,824    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-07-11T13:17:45,824         |                  ^
2024-07-11T13:17:45,824   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:45,824    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T13:17:45,825         |                   ^
2024-07-11T13:17:45,830   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,830    1275 |  if(tmp==(unsigned int)buf2[0])
2024-07-11T13:17:45,830         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:17:45,830   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-11T13:17:45,831    1001 |  int errval;
2024-07-11T13:17:45,831         |      ^~~~~~
2024-07-11T13:17:45,834   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-07-11T13:17:45,834   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:45,835    1316 |  if(size3>xfp->buf1size)
2024-07-11T13:17:45,835         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T13:17:45,837   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:45,837    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T13:17:45,838         |                   ^
2024-07-11T13:17:45,841   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-11T13:17:45,842    1289 |  int smallidx,  maxidx, minidx;
2024-07-11T13:17:45,842         |                         ^~~~~~
2024-07-11T13:17:45,842   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-11T13:17:45,842    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-11T13:17:45,842         |                         ^~~~~~
2024-07-11T13:17:45,843   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-11T13:17:45,843    1297 |  int errval=1;
2024-07-11T13:17:45,843         |      ^~~~~~
2024-07-11T13:17:45,844   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-07-11T13:17:45,845   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:45,845    1513 |  if(size3>xfp->buf1size) {
2024-07-11T13:17:45,845         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T13:17:45,851   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,851    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-07-11T13:17:45,851         |                  ^
2024-07-11T13:17:45,852   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:17:45,852    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T13:17:45,852         |                   ^
2024-07-11T13:17:45,857   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:17:45,857    1743 |  if(tmp==(unsigned int)buf2[0])
2024-07-11T13:17:45,858         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:17:45,858   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-11T13:17:45,858    1504 |  int errval=1;
2024-07-11T13:17:45,858         |      ^~~~~~
2024-07-11T13:17:48,086   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-07-11T13:17:48,179   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-07-11T13:17:48,179   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-07-11T13:17:48,180     111 |         if (slen != strlen(version)+1)
2024-07-11T13:17:48,180         |                  ^~
2024-07-11T13:17:48,180   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-07-11T13:17:48,180     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-07-11T13:17:48,180         |                                              ^~
2024-07-11T13:17:48,751   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-07-11T13:17:49,090   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:17:49,091                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:17:49,091                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:17:49,091                    from moleculekit/fileformats/xtc/trr.c:1261:
2024-07-11T13:17:49,091   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:17:49,091      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:17:49,091         |  ^~~~~~~
2024-07-11T13:17:49,695   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-07-11T13:17:49,704   moleculekit/fileformats/xtc/trr.c:16804:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-07-11T13:17:49,704   16804 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-07-11T13:17:49,704         |                                     ^~
2024-07-11T13:18:10,073   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-07-11T13:18:10,073   moleculekit/fileformats/xtc/trr.c:1163:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:10,074    1163 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-11T13:18:10,074         |                                        ^~~~~~~~~~~~~~~
2024-07-11T13:18:10,082   moleculekit/fileformats/xtc/trr.c:14714:7: note: ‘__pyx_v_status’ was declared here
2024-07-11T13:18:10,082   14714 |   int __pyx_v_status;
2024-07-11T13:18:10,083         |       ^~~~~~~~~~~~~~
2024-07-11T13:18:20,421   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-07-11T13:18:20,428   moleculekit/fileformats/xtc/trr.c:12013:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,428   12013 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-07-11T13:18:20,428         |                   ^
2024-07-11T13:18:20,435   moleculekit/fileformats/xtc/trr.c:12009:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,436   12009 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T13:18:20,436         |                   ^
2024-07-11T13:18:20,437   moleculekit/fileformats/xtc/trr.c:2485:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,437    2485 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-07-11T13:18:20,437         |                                                                                               ^
2024-07-11T13:18:20,442   moleculekit/fileformats/xtc/trr.c:10545:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-07-11T13:18:20,443   10545 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-07-11T13:18:20,443         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T13:18:20,449   moleculekit/fileformats/xtc/trr.c:12003:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,449   12003 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-07-11T13:18:20,449         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-11T13:18:20,456   moleculekit/fileformats/xtc/trr.c:11956:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,456   11956 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-07-11T13:18:20,456         |                   ^
2024-07-11T13:18:20,463   moleculekit/fileformats/xtc/trr.c:11952:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,464   11952 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T13:18:20,464         |                   ^
2024-07-11T13:18:20,464   moleculekit/fileformats/xtc/trr.c:2485:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,464    2485 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-07-11T13:18:20,465         |                                                                                               ^
2024-07-11T13:18:20,470   moleculekit/fileformats/xtc/trr.c:10561:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-07-11T13:18:20,471   10561 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-07-11T13:18:20,471         |                     ^~~~~~~~~~~~~~~~~~~~
2024-07-11T13:18:20,477   moleculekit/fileformats/xtc/trr.c:11946:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,477   11946 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-07-11T13:18:20,477         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-11T13:18:20,483   moleculekit/fileformats/xtc/trr.c:12345:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,483   12345 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T13:18:20,483         |                 ^
2024-07-11T13:18:20,490   moleculekit/fileformats/xtc/trr.c:12341:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,490   12341 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-11T13:18:20,491         |                 ^
2024-07-11T13:18:20,498   moleculekit/fileformats/xtc/trr.c:12186:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,498   12186 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T13:18:20,498         |                   ^
2024-07-11T13:18:20,505   moleculekit/fileformats/xtc/trr.c:12182:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,505   12182 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-11T13:18:20,505         |                   ^
2024-07-11T13:18:20,511   moleculekit/fileformats/xtc/trr.c:12238:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,511   12238 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T13:18:20,511         |                   ^
2024-07-11T13:18:20,518   moleculekit/fileformats/xtc/trr.c:12234:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:20,519   12234 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-11T13:18:20,519         |                   ^
2024-07-11T13:18:26,944   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:18:27,128   building 'moleculekit.dcd' extension
2024-07-11T13:18:27,129   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T13:18:27,130   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-11T13:18:27,130   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-07-11T13:18:27,470   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:18:27,470                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:18:27,470                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:18:27,471                    from moleculekit/fileformats/dcd/dcd.c:1256:
2024-07-11T13:18:27,471   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:18:27,471      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:18:27,471         |  ^~~~~~~
2024-07-11T13:18:28,493   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-07-11T13:18:28,493                    from moleculekit/fileformats/dcd/dcd.c:1262:
2024-07-11T13:18:28,494   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-07-11T13:18:28,494     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-07-11T13:18:28,494         |            ^~~~~~~~~~~~~
2024-07-11T13:18:28,494   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-07-11T13:18:28,494     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-07-11T13:18:28,494         |            ^~~~~~~~~~~~~~
2024-07-11T13:18:28,495   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-07-11T13:18:28,495     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-07-11T13:18:28,495         |            ^~~~~~~~~~~~~~~
2024-07-11T13:18:28,495   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-07-11T13:18:28,495     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-07-11T13:18:28,495         |                   ^~~~~~~~~
2024-07-11T13:18:28,495   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-07-11T13:18:28,496     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-07-11T13:18:28,496         |                   ^~~~~~~~~
2024-07-11T13:18:28,496   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-07-11T13:18:28,496     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-07-11T13:18:28,496         |                   ^~~~~~~~~
2024-07-11T13:18:28,496   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-07-11T13:18:28,496     394 | static int fio_fclose(fio_fd fd) {
2024-07-11T13:18:28,497         |            ^~~~~~~~~~
2024-07-11T13:18:28,497   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-07-11T13:18:28,497     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-07-11T13:18:28,497         |            ^~~~~~~~
2024-07-11T13:18:41,123   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-07-11T13:18:41,123   moleculekit/fileformats/dcd/dcd.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:41,123    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-11T13:18:41,123         |                                        ^~~~~~~~~~~~~~~
2024-07-11T13:18:41,127   moleculekit/fileformats/dcd/dcd.c:8476:7: note: ‘__pyx_v_i’ was declared here
2024-07-11T13:18:41,128    8476 |   int __pyx_v_i;
2024-07-11T13:18:41,128         |       ^~~~~~~~~
2024-07-11T13:18:44,380   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-07-11T13:18:44,562   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-07-11T13:18:44,562   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:18:44,563     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-07-11T13:18:44,563         |                                                       ^~
2024-07-11T13:18:44,563   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:18:44,563     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-07-11T13:18:44,563         |                                                      ^~
2024-07-11T13:18:44,563   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:18:44,564     194 |     if (input_integer[0] != dcdcordmagic)
2024-07-11T13:18:44,564         |                          ^~
2024-07-11T13:18:44,567   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:18:44,567     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-07-11T13:18:44,567         |                                               ^~
2024-07-11T13:18:44,567   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T13:18:44,567     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-07-11T13:18:44,568         |                                               ^~
2024-07-11T13:18:44,571   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-07-11T13:18:44,571   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:18:44,571     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-07-11T13:18:44,572         |                       ^~
2024-07-11T13:18:44,572   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T13:18:44,572     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-07-11T13:18:44,572         |                                                 ^~
2024-07-11T13:18:44,595   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-07-11T13:18:44,595   At top level:
2024-07-11T13:18:44,595   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-07-11T13:18:44,595      96 | static void swap2_aligned(void *v, long ndata) {
2024-07-11T13:18:44,595         |             ^~~~~~~~~~~~~
2024-07-11T13:18:44,596   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-07-11T13:18:44,596      32 | static void swap2_unaligned(void *v, long ndata) {
2024-07-11T13:18:44,596         |             ^~~~~~~~~~~~~~~
2024-07-11T13:18:44,596   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-07-11T13:18:44,596   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-07-11T13:18:44,596     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-07-11T13:18:44,597         |            ^~~~~~~~~~~~~
2024-07-11T13:18:44,597   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-07-11T13:18:44,597     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-07-11T13:18:44,597         |            ^~~~~~~~~~~~~~
2024-07-11T13:18:45,698   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:18:45,851   building 'moleculekit.binpos' extension
2024-07-11T13:18:45,852   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T13:18:45,853   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-11T13:18:45,854   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-07-11T13:18:46,195   In file included from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T13:18:46,196                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T13:18:46,196                    from /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T13:18:46,196                    from moleculekit/fileformats/binpos/binpos.c:1256:
2024-07-11T13:18:46,196   /tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T13:18:46,197      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T13:18:46,197         |  ^~~~~~~
2024-07-11T13:18:59,586   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-07-11T13:18:59,591   moleculekit/fileformats/binpos/binpos.c:8499:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:59,591    8499 |   if (__pyx_t_1) {
2024-07-11T13:18:59,591         |      ^
2024-07-11T13:18:59,595   moleculekit/fileformats/binpos/binpos.c:7976:7: note: ‘__pyx_v_status’ was declared here
2024-07-11T13:18:59,596    7976 |   int __pyx_v_status;
2024-07-11T13:18:59,596         |       ^~~~~~~~~~~~~~
2024-07-11T13:18:59,596   moleculekit/fileformats/binpos/binpos.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T13:18:59,596    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-11T13:18:59,596         |                                        ^~~~~~~~~~~~~~~
2024-07-11T13:18:59,601   moleculekit/fileformats/binpos/binpos.c:7973:7: note: ‘__pyx_v_i’ was declared here
2024-07-11T13:18:59,601    7973 |   int __pyx_v_i;
2024-07-11T13:18:59,601         |       ^~~~~~~~~
2024-07-11T13:19:01,826   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-07-11T13:19:02,126   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:19:02,267   building 'moleculekit.tmalign' extension
2024-07-11T13:19:02,268   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T13:19:02,269   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-11T13:19:02,270   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-07-11T13:19:31,824   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-fskmxbwq/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-07-11T13:19:50,353   In file included from /usr/include/c++/10/vector:72,
2024-07-11T13:19:50,354                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-07-11T13:19:50,354   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-07-11T13:19:50,354   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-07-11T13:19:50,354     426 |       vector<_Tp, _Alloc>::
2024-07-11T13:19:50,354         |       ^~~~~~~~~~~~~~~~~~~
2024-07-11T13:19:50,932   In file included from /usr/include/c++/10/vector:67,
2024-07-11T13:19:50,933                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-07-11T13:19:50,933   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-07-11T13:19:50,933   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-11T13:19:50,933    1198 |    _M_realloc_insert(end(), __x);
2024-07-11T13:19:50,933         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T13:19:50,934   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-11T13:19:50,934    1198 |    _M_realloc_insert(end(), __x);
2024-07-11T13:19:50,934         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T13:19:50,934   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-11T13:19:50,935    1198 |    _M_realloc_insert(end(), __x);
2024-07-11T13:19:50,935         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T13:19:53,380   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-07-11T13:19:53,860   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-07-11T13:19:53,860   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.9.0'
2024-07-11T13:19:53,860   installing to build/bdist.linux-armv7l/wheel
2024-07-11T13:19:53,861   running install
2024-07-11T13:19:53,887   running install_lib
2024-07-11T13:19:53,894   creating build/bdist.linux-armv7l
2024-07-11T13:19:53,895   creating build/bdist.linux-armv7l/wheel
2024-07-11T13:19:53,898   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:53,899   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:53,902   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:53,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:53,907   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-11T13:19:53,909   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-11T13:19:53,911   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-07-11T13:19:53,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-07-11T13:19:53,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-11T13:19:53,919   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-11T13:19:53,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-11T13:19:53,923   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-11T13:19:53,926   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-11T13:19:53,928   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-11T13:19:53,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-11T13:19:53,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-11T13:19:53,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-11T13:19:53,951   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-11T13:19:53,953   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-11T13:19:53,955   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-07-11T13:19:53,957   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-07-11T13:19:53,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-11T13:19:53,975   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T13:19:53,976   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T13:19:53,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T13:19:53,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T13:19:53,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T13:19:53,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T13:19:53,988   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-11T13:19:53,991   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-11T13:19:53,993   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T13:19:53,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T13:19:54,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T13:19:54,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T13:19:54,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T13:19:54,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T13:19:54,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T13:19:54,065   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T13:19:54,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T13:19:54,069   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T13:19:54,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T13:19:54,073   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T13:19:54,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T13:19:54,078   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T13:19:54,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T13:19:54,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T13:19:54,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T13:19:54,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T13:19:54,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T13:19:54,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T13:19:54,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T13:19:54,093   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-11T13:19:54,094   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-11T13:19:54,096   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-11T13:19:54,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,178   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,180   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,195   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,197   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-11T13:19:54,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-11T13:19:54,201   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-11T13:19:54,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,230   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,231   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,233   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,235   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,237   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,242   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,244   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,246   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,252   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,256   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,261   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T13:19:54,266   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-11T13:19:54,267   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-11T13:19:54,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-11T13:19:54,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,307   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T13:19:54,308   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T13:19:54,311   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmolcdp.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T13:19:54,313   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T13:19:54,316   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T13:19:54,319   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T13:19:54,321   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T13:19:54,323   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T13:19:54,327   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T13:19:54,328   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T13:19:54,330   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T13:19:54,332   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T13:19:54,335   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T13:19:54,338   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-07-11T13:19:54,339   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T13:19:54,341   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T13:19:54,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T13:19:54,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T13:19:54,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/BinaryCifReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T13:19:54,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T13:19:54,354   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-07-11T13:19:54,356   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-11T13:19:54,357   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-11T13:19:54,360   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-11T13:19:54,362   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T13:19:54,363   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T13:19:54,366   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T13:19:54,368   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T13:19:54,371   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T13:19:54,373   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-11T13:19:54,375   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-07-11T13:19:54,379   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,380   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,382   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,389   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,391   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,393   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,409   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,413   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,417   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,419   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,421   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,423   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,426   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,428   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,437   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,439   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,443   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,445   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,448   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,451   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,455   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,457   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,459   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,463   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,465   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,467   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,469   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,471   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,475   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,482   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,486   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,488   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,490   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,498   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,501   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,503   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,510   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,514   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,518   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,523   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,525   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,532   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,535   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,539   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,542   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,544   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,555   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,572   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,574   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,576   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,581   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,583   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,590   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,594   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,599   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,601   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,613   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,615   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,617   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,622   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,624   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,626   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,628   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,637   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,643   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,650   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,658   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,659   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,661   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,669   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,671   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,672   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,678   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,683   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,685   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,687   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,691   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,693   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,695   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,697   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,701   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,710   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,712   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,716   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,718   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,720   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,724   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,728   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,729   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,733   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,735   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,736   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,738   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T13:19:54,741   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-11T13:19:54,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-11T13:19:54,745   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-11T13:19:54,934   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-07-11T13:19:54,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-07-11T13:19:54,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,939   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,945   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-11T13:19:54,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-11T13:19:54,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-11T13:19:54,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-11T13:19:54,970   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-07-11T13:19:54,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-07-11T13:19:54,977   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-07-11T13:19:54,978   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-07-11T13:19:54,980   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,988   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:54,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:55,038   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:55,042   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-11T13:19:55,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-11T13:19:55,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-11T13:19:55,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-11T13:19:55,051   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:55,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:55,081   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-11T13:19:55,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-11T13:19:55,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-11T13:19:55,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:55,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:55,106   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T13:19:55,107   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-11T13:19:55,108   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-11T13:19:55,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-11T13:19:55,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T13:19:55,159   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-11T13:19:55,160   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-11T13:19:55,182   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-11T13:19:55,185   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-11T13:19:55,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-11T13:19:55,214   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-11T13:19:55,216   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T13:19:55,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T13:19:55,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T13:19:55,243   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T13:19:55,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T13:19:55,288   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-11T13:19:55,289   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-11T13:19:55,291   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-11T13:19:55,313   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:55,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:56,138   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-11T13:19:56,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-11T13:19:56,142   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-11T13:19:56,188   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:56,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:56,222   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-11T13:19:56,223   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-11T13:19:56,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-11T13:19:56,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:56,256   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:56,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:56,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:56,284   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T13:19:56,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T13:19:56,287   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T13:19:56,289   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T13:19:56,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T13:19:56,293   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T13:19:56,314   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,318   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,323   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,325   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,330   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,333   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,335   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,338   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-11T13:19:56,339   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-11T13:19:56,341   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-11T13:19:56,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,349   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,354   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T13:19:56,356   running install_egg_info
2024-07-11T13:19:56,362   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.9.0-py3.9.egg-info
2024-07-11T13:19:56,374   running install_scripts
2024-07-11T13:19:56,421   creating build/bdist.linux-armv7l/wheel/moleculekit-1.9.0.dist-info/WHEEL
2024-07-11T13:19:56,424   creating '/tmp/pip-wheel-8inw1np_/.tmp-ahwbsxfk/moleculekit-1.9.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-07-11T13:19:56,427   adding 'moleculekit/__init__.py'
2024-07-11T13:19:56,429   adding 'moleculekit/_version.py'
2024-07-11T13:19:56,431   adding 'moleculekit/align.py'
2024-07-11T13:19:56,742   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:19:56,904   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:19:56,910   adding 'moleculekit/bondguesser.py'
2024-07-11T13:19:57,154   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:19:57,164   adding 'moleculekit/config.py'
2024-07-11T13:19:57,422   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:19:57,594   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:19:57,601   adding 'moleculekit/dihedral.py'
2024-07-11T13:19:57,603   adding 'moleculekit/distance.py'
2024-07-11T13:19:57,932   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:19:57,945   adding 'moleculekit/home.py'
2024-07-11T13:19:57,947   adding 'moleculekit/logging.ini'
2024-07-11T13:19:57,962   adding 'moleculekit/molecule.py'
2024-07-11T13:19:58,189   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:19:58,198   adding 'moleculekit/opm.py'
2024-07-11T13:19:58,200   adding 'moleculekit/periodictable.py'
2024-07-11T13:19:58,202   adding 'moleculekit/pymolgraphics.py'
2024-07-11T13:19:58,204   adding 'moleculekit/rcsb.py'
2024-07-11T13:19:58,206   adding 'moleculekit/rdkitintegration.py'
2024-07-11T13:19:58,220   adding 'moleculekit/readers.py'
2024-07-11T13:19:58,825   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:19:59,138   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:19:59,150   adding 'moleculekit/util.py'
2024-07-11T13:19:59,152   adding 'moleculekit/version.py'
2024-07-11T13:19:59,154   adding 'moleculekit/viewer.py'
2024-07-11T13:19:59,156   adding 'moleculekit/vmd_wrapper'
2024-07-11T13:19:59,158   adding 'moleculekit/vmdgraphics.py'
2024-07-11T13:19:59,160   adding 'moleculekit/vmdviewer.py'
2024-07-11T13:19:59,414   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:19:59,428   adding 'moleculekit/writers.py'
2024-07-11T13:19:59,697   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:19:59,707   adding 'moleculekit/atomselect/__init__.py'
2024-07-11T13:19:59,711   adding 'moleculekit/atomselect/analyze.py'
2024-07-11T13:19:59,714   adding 'moleculekit/atomselect/atomselect.py'
2024-07-11T13:19:59,716   adding 'moleculekit/atomselect/languageparser.py'
2024-07-11T13:19:59,821   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-07-11T13:19:59,833   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-07-11T13:19:59,926   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-07-11T13:19:59,936   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-07-11T13:20:00,027   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-07-11T13:20:00,036   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-07-11T13:20:00,141   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-07-11T13:20:00,152   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-07-11T13:20:00,154   adding 'moleculekit/fileformats/__init__.py'
2024-07-11T13:20:00,159   adding 'moleculekit/fileformats/netcdf.py'
2024-07-11T13:20:00,162   adding 'moleculekit/fileformats/utils.py'
2024-07-11T13:20:00,224   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-07-11T13:20:00,232   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-07-11T13:20:00,234   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-07-11T13:20:00,235   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-07-11T13:20:00,237   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-07-11T13:20:00,242   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-07-11T13:20:00,245   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-07-11T13:20:00,310   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-07-11T13:20:00,318   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-07-11T13:20:00,320   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-07-11T13:20:00,322   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-07-11T13:20:00,324   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-07-11T13:20:00,326   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-07-11T13:20:00,328   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-07-11T13:20:00,333   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-07-11T13:20:00,339   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-07-11T13:20:00,436   adding 'moleculekit/fileformats/xtc/trr.c'
2024-07-11T13:20:00,448   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-07-11T13:20:00,450   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-07-11T13:20:00,452   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-07-11T13:20:00,543   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-07-11T13:20:00,552   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-07-11T13:20:00,553   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-07-11T13:20:00,555   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-07-11T13:20:00,557   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-07-11T13:20:00,560   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-07-11T13:20:00,562   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-07-11T13:20:00,563   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-07-11T13:20:00,565   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-07-11T13:20:00,567   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-07-11T13:20:00,574   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-07-11T13:20:00,577   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-07-11T13:20:00,579   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-07-11T13:20:00,581   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-07-11T13:20:00,583   adding 'moleculekit/interactions/__init__.py'
2024-07-11T13:20:00,868   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:20:01,137   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:20:01,149   adding 'moleculekit/interactions/interactions.py'
2024-07-11T13:20:01,432   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:20:01,721   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T13:20:01,824   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-07-11T13:20:01,834   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-07-11T13:20:01,927   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-07-11T13:20:01,936   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-07-11T13:20:02,030   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-07-11T13:20:02,039   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-07-11T13:20:02,133   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-07-11T13:20:02,142   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-07-11T13:20:02,231   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-07-11T13:20:02,240   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-07-11T13:20:02,242   adding 'moleculekit/pdbx/__init__.py'
2024-07-11T13:20:02,245   adding 'moleculekit/pdbx/reader/BinaryCifReader.py'
2024-07-11T13:20:02,249   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-07-11T13:20:02,252   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-07-11T13:20:02,254   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-07-11T13:20:02,256   adding 'moleculekit/pdbx/reader/__init__.py'
2024-07-11T13:20:02,258   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-07-11T13:20:02,260   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-07-11T13:20:02,262   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-07-11T13:20:02,263   adding 'moleculekit/pdbx/tests/__init__.py'
2024-07-11T13:20:02,265   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-07-11T13:20:02,267   adding 'moleculekit/pdbx/writer/__init__.py'
2024-07-11T13:20:02,270   adding 'moleculekit/ply/__init__.py'
2024-07-11T13:20:02,274   adding 'moleculekit/ply/lex.py'
2024-07-11T13:20:02,286   adding 'moleculekit/ply/yacc.py'
2024-07-11T13:20:02,289   adding 'moleculekit/projections/__init__.py'
2024-07-11T13:20:02,291   adding 'moleculekit/projections/metriccoordinate.py'
2024-07-11T13:20:02,295   adding 'moleculekit/projections/metricdihedral.py'
2024-07-11T13:20:02,300   adding 'moleculekit/projections/metricdistance.py'
2024-07-11T13:20:02,302   adding 'moleculekit/projections/metricfluctuation.py'
2024-07-11T13:20:02,304   adding 'moleculekit/projections/metricgyration.py'
2024-07-11T13:20:02,308   adding 'moleculekit/projections/metricplumed2.py'
2024-07-11T13:20:02,310   adding 'moleculekit/projections/metricrmsd.py'
2024-07-11T13:20:02,313   adding 'moleculekit/projections/metricsasa.py'
2024-07-11T13:20:02,315   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-07-11T13:20:02,317   adding 'moleculekit/projections/metricshell.py'
2024-07-11T13:20:02,319   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-07-11T13:20:02,321   adding 'moleculekit/projections/metrictmscore.py'
2024-07-11T13:20:02,323   adding 'moleculekit/projections/projection.py'
2024-07-11T13:20:02,324   adding 'moleculekit/projections/util.py'
2024-07-11T13:20:02,327   adding 'moleculekit/share/ALA.cif'
2024-07-11T13:20:02,329   adding 'moleculekit/share/backbone.cif'
2024-07-11T13:20:03,635   adding 'moleculekit/share/opm_sequences.json'
2024-07-11T13:20:03,721   adding 'moleculekit/share/atomselect/atomselect.json'
2024-07-11T13:20:03,726   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-07-11T13:20:03,728   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-07-11T13:20:03,729   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-07-11T13:20:03,731   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-07-11T13:20:03,732   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-07-11T13:20:03,734   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-07-11T13:20:03,735   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-07-11T13:20:03,737   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-07-11T13:20:03,739   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-07-11T13:20:03,740   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-07-11T13:20:03,742   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-07-11T13:20:03,743   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-07-11T13:20:03,745   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-07-11T13:20:03,747   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-07-11T13:20:03,748   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-07-11T13:20:03,750   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-07-11T13:20:03,751   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-07-11T13:20:03,753   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-07-11T13:20:03,755   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-07-11T13:20:03,756   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-07-11T13:20:03,758   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-07-11T13:20:03,760   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-07-11T13:20:03,761   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-07-11T13:20:03,763   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-07-11T13:20:03,764   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-07-11T13:20:03,766   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-07-11T13:20:03,768   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-07-11T13:20:03,769   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-07-11T13:20:03,771   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-07-11T13:20:03,772   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-07-11T13:20:03,780   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-07-11T13:20:03,781   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-07-11T13:20:03,783   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-07-11T13:20:03,784   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-07-11T13:20:03,786   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-07-11T13:20:03,787   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-07-11T13:20:03,789   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-07-11T13:20:03,791   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-07-11T13:20:03,792   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-07-11T13:20:03,794   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-07-11T13:20:03,795   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-07-11T13:20:03,797   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-07-11T13:20:03,799   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-07-11T13:20:03,800   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-07-11T13:20:03,802   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-07-11T13:20:03,803   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-07-11T13:20:03,805   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-07-11T13:20:03,806   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-07-11T13:20:03,808   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-07-11T13:20:03,809   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-07-11T13:20:03,811   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-07-11T13:20:03,812   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-07-11T13:20:03,814   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-07-11T13:20:03,816   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-07-11T13:20:03,817   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-07-11T13:20:03,819   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-07-11T13:20:03,820   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-07-11T13:20:03,822   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-07-11T13:20:03,823   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-07-11T13:20:03,825   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-07-11T13:20:03,826   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-07-11T13:20:03,828   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-07-11T13:20:03,829   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-07-11T13:20:03,831   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-07-11T13:20:03,832   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-07-11T13:20:03,834   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-07-11T13:20:03,835   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-07-11T13:20:03,837   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-07-11T13:20:03,839   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-07-11T13:20:03,840   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-07-11T13:20:03,842   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-07-11T13:20:03,843   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-07-11T13:20:03,845   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-07-11T13:20:03,846   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-07-11T13:20:03,848   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-07-11T13:20:03,849   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-07-11T13:20:03,851   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-07-11T13:20:03,852   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-07-11T13:20:03,854   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-07-11T13:20:03,855   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-07-11T13:20:03,857   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-07-11T13:20:03,859   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-07-11T13:20:03,860   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-07-11T13:20:03,862   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-07-11T13:20:03,863   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-07-11T13:20:03,865   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-07-11T13:20:03,867   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-07-11T13:20:03,868   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-07-11T13:20:03,870   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-07-11T13:20:03,871   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-07-11T13:20:03,873   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-07-11T13:20:03,875   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-07-11T13:20:03,876   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-07-11T13:20:03,878   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-07-11T13:20:03,879   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-07-11T13:20:03,881   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-07-11T13:20:03,882   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-07-11T13:20:03,884   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-07-11T13:20:03,885   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-07-11T13:20:03,887   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-07-11T13:20:03,889   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-07-11T13:20:03,890   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-07-11T13:20:03,892   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-07-11T13:20:03,893   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-07-11T13:20:03,895   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-07-11T13:20:03,896   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-07-11T13:20:03,898   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-07-11T13:20:03,899   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-07-11T13:20:03,901   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-07-11T13:20:03,903   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-07-11T13:20:03,904   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-07-11T13:20:03,906   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-07-11T13:20:03,907   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-07-11T13:20:03,909   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-07-11T13:20:03,911   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-07-11T13:20:03,912   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-07-11T13:20:03,914   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-07-11T13:20:03,915   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-07-11T13:20:03,917   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-07-11T13:20:03,918   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-07-11T13:20:03,920   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-07-11T13:20:03,922   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-07-11T13:20:03,923   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-07-11T13:20:03,925   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-07-11T13:20:03,926   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-07-11T13:20:03,928   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-07-11T13:20:03,929   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-07-11T13:20:03,931   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-07-11T13:20:03,933   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-07-11T13:20:03,934   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-07-11T13:20:03,936   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-07-11T13:20:03,937   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-07-11T13:20:03,939   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-07-11T13:20:03,940   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-07-11T13:20:03,942   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-07-11T13:20:03,943   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-07-11T13:20:03,945   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-07-11T13:20:03,947   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-07-11T13:20:03,948   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-07-11T13:20:03,950   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-07-11T13:20:03,951   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-07-11T13:20:03,953   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-07-11T13:20:03,954   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-07-11T13:20:03,956   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-07-11T13:20:03,957   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-07-11T13:20:03,959   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-07-11T13:20:03,960   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-07-11T13:20:03,962   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-07-11T13:20:03,963   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-07-11T13:20:03,965   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-07-11T13:20:03,967   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-07-11T13:20:03,968   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-07-11T13:20:03,970   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-07-11T13:20:03,971   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-07-11T13:20:03,973   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-07-11T13:20:03,975   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-07-11T13:20:03,977   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-07-11T13:20:03,978   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-07-11T13:20:03,980   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-07-11T13:20:03,981   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-07-11T13:20:03,983   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-07-11T13:20:03,984   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-07-11T13:20:03,986   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-07-11T13:20:03,987   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-07-11T13:20:03,989   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-07-11T13:20:03,991   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-07-11T13:20:03,992   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-07-11T13:20:03,994   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-07-11T13:20:03,995   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-07-11T13:20:03,997   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-07-11T13:20:03,999   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-07-11T13:20:04,000   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-07-11T13:20:04,002   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-07-11T13:20:04,003   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-07-11T13:20:04,005   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-07-11T13:20:04,007   adding 'moleculekit/smallmol/__init__.py'
2024-07-11T13:20:04,012   adding 'moleculekit/smallmol/smallmol.py'
2024-07-11T13:20:04,015   adding 'moleculekit/smallmol/smallmolcdp.py'
2024-07-11T13:20:04,017   adding 'moleculekit/smallmol/smallmollib.py'
2024-07-11T13:20:04,020   adding 'moleculekit/smallmol/test_smallmol.py'
2024-07-11T13:20:04,021   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-07-11T13:20:04,024   adding 'moleculekit/smallmol/util.py'
2024-07-11T13:20:04,026   adding 'moleculekit/smallmol/tools/__init__.py'
2024-07-11T13:20:04,028   adding 'moleculekit/smallmol/tools/clustering.py'
2024-07-11T13:20:04,030   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-07-11T13:20:04,032   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-07-11T13:20:04,124   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-07-11T13:20:04,133   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-07-11T13:20:04,134   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-07-11T13:20:04,136   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-07-11T13:20:04,154   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-07-11T13:20:04,158   adding 'moleculekit/tools/__init__.py'
2024-07-11T13:20:04,160   adding 'moleculekit/tools/atomtyper.py'
2024-07-11T13:20:04,163   adding 'moleculekit/tools/autosegment.py'
2024-07-11T13:20:04,165   adding 'moleculekit/tools/crystalpacking.py'
2024-07-11T13:20:04,169   adding 'moleculekit/tools/detect.py'
2024-07-11T13:20:04,171   adding 'moleculekit/tools/docking.py'
2024-07-11T13:20:04,174   adding 'moleculekit/tools/graphalignment.py'
2024-07-11T13:20:04,176   adding 'moleculekit/tools/hhblitsprofile.py'
2024-07-11T13:20:04,178   adding 'moleculekit/tools/modelling.py'
2024-07-11T13:20:04,179   adding 'moleculekit/tools/moleculechecks.py'
2024-07-11T13:20:04,186   adding 'moleculekit/tools/preparation.py'
2024-07-11T13:20:04,189   adding 'moleculekit/tools/preparation_customres.py'
2024-07-11T13:20:04,191   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-07-11T13:20:04,195   adding 'moleculekit/tools/voxeldescriptors.py'
2024-07-11T13:20:04,197   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-07-11T13:20:04,199   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-07-11T13:20:04,295   adding 'moleculekit/wrapping/wrapping.cpp'
2024-07-11T13:20:04,305   adding 'moleculekit/wrapping/wrapping.pyx'
2024-07-11T13:20:04,308   adding 'moleculekit-1.9.0.dist-info/LICENSE'
2024-07-11T13:20:04,310   adding 'moleculekit-1.9.0.dist-info/METADATA'
2024-07-11T13:20:04,311   adding 'moleculekit-1.9.0.dist-info/WHEEL'
2024-07-11T13:20:04,312   adding 'moleculekit-1.9.0.dist-info/top_level.txt'
2024-07-11T13:20:04,318   adding 'moleculekit-1.9.0.dist-info/RECORD'
2024-07-11T13:20:04,477   removing build/bdist.linux-armv7l/wheel
2024-07-11T13:20:04,750   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-07-11T13:20:05,059   Created wheel for moleculekit: filename=moleculekit-1.9.0-cp39-cp39-linux_armv7l.whl size=14933007 sha256=98cbc4f7d5456ab2c8dd35319a4977fe968743136c62077f73fdf423356b3a99
2024-07-11T13:20:05,060   Stored in directory: /tmp/pip-ephem-wheel-cache-i7h22cfp/wheels/0d/3c/61/b357cedb3dffe74787caaea0f3855565bdbc2731e7b95be2e8
2024-07-11T13:20:05,088 Successfully built moleculekit
2024-07-11T13:20:05,431 Removed build tracker: '/tmp/pip-build-tracker-e4929l49'