2024-07-11T14:14:49,041 Created temporary directory: /tmp/pip-build-tracker-atqtv3tc
2024-07-11T14:14:49,042 Initialized build tracking at /tmp/pip-build-tracker-atqtv3tc
2024-07-11T14:14:49,043 Created build tracker: /tmp/pip-build-tracker-atqtv3tc
2024-07-11T14:14:49,043 Entered build tracker: /tmp/pip-build-tracker-atqtv3tc
2024-07-11T14:14:49,043 Created temporary directory: /tmp/pip-wheel-nseajkrs
2024-07-11T14:14:49,047 Created temporary directory: /tmp/pip-ephem-wheel-cache-ooyp6qe9
2024-07-11T14:14:49,071 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-11T14:14:49,075 2 location(s) to search for versions of moleculekit:
2024-07-11T14:14:49,075 * https://pypi.org/simple/moleculekit/
2024-07-11T14:14:49,075 * https://www.piwheels.org/simple/moleculekit/
2024-07-11T14:14:49,075 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-07-11T14:14:49,076 Getting page https://pypi.org/simple/moleculekit/
2024-07-11T14:14:49,077 Found index url https://pypi.org/simple/
2024-07-11T14:14:49,210 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-07-11T14:14:49,264   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,265   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-07-11T14:14:49,265   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,265   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-07-11T14:14:49,266   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,266   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-07-11T14:14:49,266   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,267   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-07-11T14:14:49,267   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,267   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-07-11T14:14:49,268   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,268   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-07-11T14:14:49,269   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,269   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-07-11T14:14:49,269   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,270   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-07-11T14:14:49,270   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,270   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-07-11T14:14:49,271   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,271   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-07-11T14:14:49,271   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,272   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-07-11T14:14:49,272   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,272   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-07-11T14:14:49,273   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,273   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-07-11T14:14:49,273   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,274   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-07-11T14:14:49,274   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,274   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-07-11T14:14:49,275   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,275   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-07-11T14:14:49,275   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,276   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-07-11T14:14:49,276   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,276   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-07-11T14:14:49,277   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,277   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-07-11T14:14:49,277   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,278   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-07-11T14:14:49,278   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,278   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-07-11T14:14:49,279   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,279   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-07-11T14:14:49,279   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,280   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-07-11T14:14:49,280   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,281   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-07-11T14:14:49,281   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,281   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-07-11T14:14:49,282   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,282   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-07-11T14:14:49,282   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,282   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-07-11T14:14:49,283   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,283   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-07-11T14:14:49,284   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,284   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-07-11T14:14:49,284   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,285   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-07-11T14:14:49,285   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,285   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-07-11T14:14:49,286   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,286   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-07-11T14:14:49,286   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,287   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2024-07-11T14:14:49,287   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,287   Found link https://files.pythonhosted.org/packages/13/f9/af3d7677c2eb61bb310ddad301ab47b9c1db2f923b0efad9ce605112aafb/moleculekit-0.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.1
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2024-07-11T14:14:49,288   Found link https://files.pythonhosted.org/packages/0d/3f/7743a3ec8c6ed58c5f0c12bf19654ba6275d473044861d9479ff346f8859/moleculekit-0.3.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.2
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2024-07-11T14:14:49,289   Found link https://files.pythonhosted.org/packages/a1/bf/2b3762bf7738dd1850a06eb6330cd8d17c49acaa272d43fc80c7c9c44a04/moleculekit-0.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.3
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2024-07-11T14:14:49,289   Found link https://files.pythonhosted.org/packages/7e/e0/d4abeaf42102abf8d132168518d29b8fec430608a3bb484a3254b63e9d37/moleculekit-0.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.4
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2024-07-11T14:14:49,290   Found link https://files.pythonhosted.org/packages/18/8a/a376ec94bd0c414528774a510846e3a34afec6356cda3d31d3a044a74a15/moleculekit-0.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.5
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2024-07-11T14:14:49,292   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/18/d2/3565f29e52927e9cc0e9a6e77908f7bcd39bb25cc6a953ef326ebb0b920f/moleculekit-0.4.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,293   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
2024-07-11T14:14:49,293   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/45/48/d6f7e3ff07d4e04aced25dc1e28790e8d1d2aa95ccd0db0f0043e354f0de/moleculekit-0.4.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-07-11T14:14:49,294   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4b/f0/8b8df48948c27171f2db632801a49bd08f3f222d1c6e69abc9281962eb29/moleculekit-0.4.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,295   Found link https://files.pythonhosted.org/packages/a4/6d/cdf319e5cf1cbe68e02ce15c36001cf739b9ca932fcafa2bff354c581560/moleculekit-0.4.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.4
2024-07-11T14:14:49,295   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/26/45/55b970222953abfaff88d3ee5bbe64b544af8e686254b80f9dbcdc027754/moleculekit-0.4.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,295   Found link https://files.pythonhosted.org/packages/8f/22/90193aaf5014419463425cf48b2857ffb08d1a85df3af6407f370ea39358/moleculekit-0.4.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.6
2024-07-11T14:14:49,296   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/24/38/72e6ecc3ee5ad4463161bfbba8c4ee06716a2d393eee3dfcbecfc6566ad4/moleculekit-0.4.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,296   Found link https://files.pythonhosted.org/packages/eb/7f/e4e084eaf2a6e4af0d1ce91c0b210836fc244592155000f92383528d20e4/moleculekit-0.4.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.7
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2024-07-11T14:14:49,297   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5c/75/2a9151eb7a9fbbd8b36c5283452449e596f081188d25c07f33a176783e8e/moleculekit-0.5.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,297   Found link https://files.pythonhosted.org/packages/31/e6/a052ad91265d7e72fcf32d9335d746bba3c06b23fc5a163960bd36e6dde6/moleculekit-0.5.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.2
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2024-07-11T14:14:49,299   Found link https://files.pythonhosted.org/packages/b1/30/da12019468d39b9fc72b300f6bc0cbc4045ad8ccc1b8f25aa9fb7dced289/moleculekit-0.5.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.4
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2024-07-11T14:14:49,300   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3a/53/7ae8cc33411c0f5f83d245abfeabfd81ed123a3cfbf8a500ec4d96648275/moleculekit-0.5.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-07-11T14:14:49,300   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/13/6a/e73e6d343e35473a200e0744ab09efaa39adeebbbe191f752bc23d7a9b3a/moleculekit-0.5.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,300   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ee/29/022155d624fde59e89cecd4a7f95e2a183d3ec0a12251cf730661ae38179/moleculekit-0.6.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,301   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/65/8e/ec9922bc8930ae3a78e0a98af4fe053e8c359ccedceb54ced12bb1954815/moleculekit-0.6.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T14:14:49,301   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4e/11/e6c8a945d9e7bc12d1829930ad91a9ee548611b7c26387a5bb7bfc3f10f9/moleculekit-0.6.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-07-11T14:14:49,311   Found link https://files.pythonhosted.org/packages/b9/00/f8d458320556166424a904edf41546e5d55d31743c27c8f63467f607ac62/moleculekit-0.9.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.5
2024-07-11T14:14:49,311   Found link https://files.pythonhosted.org/packages/c7/e6/72a4be7c3db86704ca264e68de620327a6c292f01b2fb9a9a186e0909622/moleculekit-0.9.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.6
2024-07-11T14:14:49,312   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-07-11T14:14:49,312   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-07-11T14:14:49,312   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-07-11T14:14:49,313   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-07-11T14:14:49,313   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-07-11T14:14:49,314   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-07-11T14:14:49,314   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-07-11T14:14:49,314   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-07-11T14:14:49,315   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-07-11T14:14:49,315   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-07-11T14:14:49,315   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-07-11T14:14:49,316   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-07-11T14:14:49,316   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-07-11T14:14:49,317   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-07-11T14:14:49,317   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-07-11T14:14:49,317   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-07-11T14:14:49,318   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-07-11T14:14:49,318   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-07-11T14:14:49,319   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-07-11T14:14:49,319   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-07-11T14:14:49,319   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-07-11T14:14:49,320   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-07-11T14:14:49,320   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-07-11T14:14:49,320   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-07-11T14:14:49,321   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-07-11T14:14:49,321   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-07-11T14:14:49,322   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-07-11T14:14:49,322   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-07-11T14:14:49,322   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-07-11T14:14:49,323   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-07-11T14:14:49,323   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-07-11T14:14:49,324   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-07-11T14:14:49,324   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-07-11T14:14:49,325   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-07-11T14:14:49,325   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-07-11T14:14:49,325   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-07-11T14:14:49,326   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-07-11T14:14:49,326   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-07-11T14:14:49,327   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-07-11T14:14:49,327   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-07-11T14:14:49,327   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-07-11T14:14:49,328   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-07-11T14:14:49,328   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-07-11T14:14:49,329   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-07-11T14:14:49,329   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-07-11T14:14:49,329   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-07-11T14:14:49,330   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-07-11T14:14:49,331   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-07-11T14:14:49,331   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-07-11T14:14:49,332   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-07-11T14:14:49,333   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-07-11T14:14:49,334   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-07-11T14:14:49,335   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-07-11T14:14:49,335   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-07-11T14:14:49,336   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-07-11T14:14:49,337   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-07-11T14:14:49,338   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-07-11T14:14:49,339   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-07-11T14:14:49,339   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-07-11T14:14:49,340   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-07-11T14:14:49,340   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-07-11T14:14:49,341   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-07-11T14:14:49,341   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-07-11T14:14:49,342   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-07-11T14:14:49,342   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-07-11T14:14:49,343   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-07-11T14:14:49,343   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-07-11T14:14:49,344   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2024-07-11T14:14:49,345   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-07-11T14:14:49,345   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-07-11T14:14:49,346   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-07-11T14:14:49,346   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-07-11T14:14:49,347   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-07-11T14:14:49,347   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-07-11T14:14:49,348   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-07-11T14:14:49,348   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-07-11T14:14:49,349   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-07-11T14:14:49,349   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-07-11T14:14:49,350   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-07-11T14:14:49,350   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-07-11T14:14:49,351   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-07-11T14:14:49,352   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-07-11T14:14:49,352   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-07-11T14:14:49,353   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-07-11T14:14:49,353   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-07-11T14:14:49,354   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-07-11T14:14:49,354   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-07-11T14:14:49,355   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-07-11T14:14:49,355   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-07-11T14:14:49,356   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-07-11T14:14:49,356   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-07-11T14:14:49,357   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-07-11T14:14:49,357   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-07-11T14:14:49,358   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-07-11T14:14:49,358   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-07-11T14:14:49,359   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-07-11T14:14:49,359   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-07-11T14:14:49,360   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-07-11T14:14:49,361   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-07-11T14:14:49,361   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-07-11T14:14:49,362   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-07-11T14:14:49,362   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-07-11T14:14:49,363   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-07-11T14:14:49,363   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-07-11T14:14:49,364   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-07-11T14:14:49,365   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-07-11T14:14:49,365   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-07-11T14:14:49,366   Found link https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.31
2024-07-11T14:14:49,366   Found link https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.32
2024-07-11T14:14:49,367   Found link https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.33
2024-07-11T14:14:49,367   Found link https://files.pythonhosted.org/packages/d4/0f/1b1f0d41c3ff855afca374140213f1c43b3a9659eebc4460899fead843ff/moleculekit-1.8.34.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.34
2024-07-11T14:14:49,368   Found link https://files.pythonhosted.org/packages/26/6b/1104888679e9faf8b0e4e9b15586ea7532e171fe127c06e067c9ad563238/moleculekit-1.8.35.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.35
2024-07-11T14:14:49,368   Found link https://files.pythonhosted.org/packages/cf/5e/035ee54b5606e7489eed8e94571ca014339f5a6959902eff9f40bf4e0d7f/moleculekit-1.8.36.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.36
2024-07-11T14:14:49,369   Found link https://files.pythonhosted.org/packages/38/d6/30462b4aeb3cb9ae0244bc9882779d3249e39393f5ea71c6abc2d36bb1ed/moleculekit-1.9.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.0
2024-07-11T14:14:49,369   Found link https://files.pythonhosted.org/packages/03/ac/c81679ee7481d8dd7e0fa576dafe3963c48c065ab2ca808b53f59693c211/moleculekit-1.9.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.1
2024-07-11T14:14:49,370   Found link https://files.pythonhosted.org/packages/32/f1/d21bc1d0589eb9e230a6f35f2650e452a0f85915c109cf8284747fea3232/moleculekit-1.9.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.2
2024-07-11T14:14:49,370 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-07-11T14:14:49,371 Getting page https://www.piwheels.org/simple/moleculekit/
2024-07-11T14:14:49,372 Found index url https://www.piwheels.org/simple/
2024-07-11T14:14:49,460 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-07-11T14:14:49,563   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp311-cp311-linux_armv6l.whl#sha256=d6035d34abe9a702dc48a7b6e979670c6e0eb97db1a3a940dbd9f96bfc42eb03 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,563   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp311-cp311-linux_armv7l.whl#sha256=d6035d34abe9a702dc48a7b6e979670c6e0eb97db1a3a940dbd9f96bfc42eb03 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,563   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp39-cp39-linux_armv6l.whl#sha256=98cbc4f7d5456ab2c8dd35319a4977fe968743136c62077f73fdf423356b3a99 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp39-cp39-linux_armv7l.whl#sha256=98cbc4f7d5456ab2c8dd35319a4977fe968743136c62077f73fdf423356b3a99 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp311-cp311-linux_armv6l.whl#sha256=e0fa24f661e395d9f38f9e1616422ff28e4ed401dd67c35c172ffccf1ea54038 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp311-cp311-linux_armv7l.whl#sha256=e0fa24f661e395d9f38f9e1616422ff28e4ed401dd67c35c172ffccf1ea54038 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp39-cp39-linux_armv6l.whl#sha256=671167765eb458b97e36ab9bd793dd20c4eec64fd47d38eba8e093b8427307b1 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp39-cp39-linux_armv7l.whl#sha256=671167765eb458b97e36ab9bd793dd20c4eec64fd47d38eba8e093b8427307b1 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp311-cp311-linux_armv6l.whl#sha256=39ce57e47150b9abdc5c79aee4f41a74f5f79b84caf1d9f038f68d172e3d11f3 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp311-cp311-linux_armv7l.whl#sha256=39ce57e47150b9abdc5c79aee4f41a74f5f79b84caf1d9f038f68d172e3d11f3 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp39-cp39-linux_armv6l.whl#sha256=bc4488b38699175360d9d00251d83750b68be24b494759299c9703344259af9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp39-cp39-linux_armv7l.whl#sha256=bc4488b38699175360d9d00251d83750b68be24b494759299c9703344259af9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.34-cp311-cp311-linux_armv6l.whl#sha256=942c98d7f1683d7846c9afa7242cfc6ce8754a90853a7129c5eae6f1081d1d0c (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.34-cp311-cp311-linux_armv7l.whl#sha256=942c98d7f1683d7846c9afa7242cfc6ce8754a90853a7129c5eae6f1081d1d0c (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T14:14:49,566   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.34-cp39-cp39-linux_armv6l.whl#sha256=3e3ca8c16ef993abbd889b734326ba2303227bdd4797f95337551e5a57b7c4ab (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-07-11T14:14:49,608   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T14:14:49,608   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,608   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,608   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,609   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,609   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,609   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,609   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,609   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,609   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,610   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,610   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,610   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,610   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,610   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,611   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,611   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,611   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,611   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,611   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,611   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,612   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,612   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,612   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,612   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,612   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,613   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,613   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,613   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,613   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,613   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,613   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,614   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,614   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,614   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,614   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,614   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,615   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,615   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,615   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,615   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,615   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,615   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,616   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,616   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,616   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,616   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,616   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,617   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,617   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,617   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,617   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,617   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,617   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,618   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,618   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,618   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,618   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,618   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,619   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,619   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T14:14:49,625   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T14:14:49,626   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T14:14:49,627   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T14:14:49,628   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T14:14:49,628   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,628   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T14:14:49,630   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.27-py3-none-any.whl#sha256=fc3413a0265ea20a77f4167b72a3c80b8b45f7338a57d1f999fba81a45110a38 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,630   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.26-py3-none-any.whl#sha256=fe35ec2f09b9b40631f7b47c1fe463b18166a272776c4c4f839718c50fd62e14 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,630   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,630   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.23-py3-none-any.whl#sha256=a174c23806ee69677ad74cd6376e8a22f000abcd5817ae7bd67ec2639d750a72 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,630   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.16-py3-none-any.whl#sha256=8045990a2fc7c805a4ab8244abe9eae67ac92495cbce12f1c9e8b0daa26a77b1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.15-py3-none-any.whl#sha256=4db5d8b5350b36ce41d225c471f0fdd64f708826935ac50675fb278c00275339 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.9-py3-none-any.whl#sha256=f91729081bef559daf39b7eecfd7ae81dbd90706ad12061dc95146e3737a7385 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.7-py3-none-any.whl#sha256=899ef09b80e1ad2e3931cb2023fae09cfeecd45b83fade6c8e8739126ca67a20 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.6-py3-none-any.whl#sha256=0a288cd1efd660482dcc967caed02315dd8f02c19a0287eee0b8519d761db1b3 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,633   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.5-py3-none-any.whl#sha256=2f111e31b3f90e63ca0154c528585208b8bd41a065aa0078325683f4b36eacec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,633   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T14:14:49,633 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-07-11T14:14:49,633 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-07-11T14:14:49,703 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-07-11T14:14:49,721 Collecting moleculekit==1.9.1
2024-07-11T14:14:49,723   Created temporary directory: /tmp/pip-unpack-nvzbsq45
2024-07-11T14:14:49,766   Downloading moleculekit-1.9.1.tar.gz (6.8 MB)
2024-07-11T14:14:52,179   Added moleculekit==1.9.1 from https://files.pythonhosted.org/packages/03/ac/c81679ee7481d8dd7e0fa576dafe3963c48c065ab2ca808b53f59693c211/moleculekit-1.9.1.tar.gz to build tracker '/tmp/pip-build-tracker-atqtv3tc'
2024-07-11T14:14:52,187   Created temporary directory: /tmp/pip-build-env-k7hm872d
2024-07-11T14:14:52,197   Installing build dependencies: started
2024-07-11T14:14:52,198   Running command pip subprocess to install build dependencies
2024-07-11T14:14:53,414   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-07-11T14:14:53,954   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-11T14:14:55,442   Collecting setuptools
2024-07-11T14:14:55,459     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.3.0-py3-none-any.whl (931 kB)
2024-07-11T14:14:56,549   Collecting numpy>=1.18.5
2024-07-11T14:14:56,567     Using cached https://www.piwheels.org/simple/numpy/numpy-2.0.0-cp39-cp39-linux_armv7l.whl (5.8 MB)
2024-07-11T14:14:58,177   Collecting Cython>=0.29.21
2024-07-11T14:14:58,196     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-07-11T14:14:58,596   Collecting toml
2024-07-11T14:14:58,614     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-07-11T14:14:58,715   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-07-11T14:14:58,734     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-07-11T14:14:58,896   Collecting tomli (from versioneer[toml]==0.28)
2024-07-11T14:14:58,914     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-07-11T14:15:00,756   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-07-11T14:15:00,794     Creating /tmp/pip-build-env-k7hm872d/overlay/bin
2024-07-11T14:15:00,797     changing mode of /tmp/pip-build-env-k7hm872d/overlay/bin/versioneer to 755
2024-07-11T14:15:11,663     changing mode of /tmp/pip-build-env-k7hm872d/overlay/bin/f2py to 755
2024-07-11T14:15:11,666     changing mode of /tmp/pip-build-env-k7hm872d/overlay/bin/numpy-config to 755
2024-07-11T14:15:15,189     changing mode of /tmp/pip-build-env-k7hm872d/overlay/bin/cygdb to 755
2024-07-11T14:15:15,193     changing mode of /tmp/pip-build-env-k7hm872d/overlay/bin/cython to 755
2024-07-11T14:15:15,197     changing mode of /tmp/pip-build-env-k7hm872d/overlay/bin/cythonize to 755
2024-07-11T14:15:15,274   Successfully installed Cython-3.0.10 numpy-2.0.0 setuptools-70.3.0 toml-0.10.2 tomli-2.0.1 versioneer-0.28

2024-07-11T14:15:15,496   [notice] A new release of pip is available: 24.0 -> 24.1.2
2024-07-11T14:15:15,497   [notice] To update, run: python3 -m pip install --upgrade pip
2024-07-11T14:15:15,997   Installing build dependencies: finished with status 'done'
2024-07-11T14:15:16,003   Getting requirements to build wheel: started
2024-07-11T14:15:16,004   Running command Getting requirements to build wheel
2024-07-11T14:15:55,894   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-07-11T14:16:05,717   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T14:16:05,718   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T14:16:05,718   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T14:16:05,718   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T14:16:05,718   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T14:16:05,718   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T14:16:05,718   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T14:16:05,718   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T14:16:05,719   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T14:16:05,719   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T14:16:05,719   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-11T14:16:05,719   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-11T14:16:05,719   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-11T14:16:05,719   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-11T14:16:05,719   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T14:16:05,720   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-07-11T14:16:05,720   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-07-11T14:16:05,720   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-07-11T14:16:05,720   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-07-11T14:16:05,720   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-07-11T14:16:05,720   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-07-11T14:16:05,720   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-07-11T14:16:05,720   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-07-11T14:16:05,721   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-07-11T14:16:05,721   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-07-11T14:16:05,721   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-07-11T14:16:05,721   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-07-11T14:16:05,721   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-07-11T14:16:05,721   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-07-11T14:16:05,721   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-07-11T14:16:06,147   running egg_info
2024-07-11T14:16:06,154   writing moleculekit.egg-info/PKG-INFO
2024-07-11T14:16:06,159   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-07-11T14:16:06,162   writing requirements to moleculekit.egg-info/requires.txt
2024-07-11T14:16:06,164   writing top-level names to moleculekit.egg-info/top_level.txt
2024-07-11T14:16:06,209   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,210   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,210   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,210   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,210   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,210   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,210   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,210   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,211   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,211   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,211   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,211   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,211   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,211   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,211   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,212   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,212   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,212   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,212   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,212   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,212   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,212   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,212   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,213   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,213   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,213   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,213   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,213   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,213   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,213   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,213   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,214   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,214   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,214   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,214   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-11T14:16:06,214   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-07-11T14:16:06,215   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,215   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-11T14:16:06,219   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,219   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-11T14:16:06,222   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,223   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,223   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,223   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:06,240   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-11T14:16:06,304   reading manifest template 'MANIFEST.in'
2024-07-11T14:16:06,848   no previously-included directories found matching 'moleculekit/test-data'
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2024-07-11T14:16:06,851   adding license file 'LICENSE'
2024-07-11T14:16:06,869   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-11T14:16:08,500   Getting requirements to build wheel: finished with status 'done'
2024-07-11T14:16:08,505   Created temporary directory: /tmp/pip-modern-metadata-qm7_5x8v
2024-07-11T14:16:08,507   Preparing metadata (pyproject.toml): started
2024-07-11T14:16:08,508   Running command Preparing metadata (pyproject.toml)
2024-07-11T14:16:10,930   running dist_info
2024-07-11T14:16:10,932   creating /tmp/pip-modern-metadata-qm7_5x8v/moleculekit.egg-info
2024-07-11T14:16:10,938   writing /tmp/pip-modern-metadata-qm7_5x8v/moleculekit.egg-info/PKG-INFO
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2024-07-11T14:16:10,945   writing requirements to /tmp/pip-modern-metadata-qm7_5x8v/moleculekit.egg-info/requires.txt
2024-07-11T14:16:10,946   writing top-level names to /tmp/pip-modern-metadata-qm7_5x8v/moleculekit.egg-info/top_level.txt
2024-07-11T14:16:10,947   writing manifest file '/tmp/pip-modern-metadata-qm7_5x8v/moleculekit.egg-info/SOURCES.txt'
2024-07-11T14:16:10,973   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-11T14:16:10,979   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-11T14:16:10,981   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,981   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,981   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,981   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,981   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,981   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,983   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,983   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,983   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,983   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,983   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,984   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,984   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,984   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,984   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,985   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,985   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,985   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,986   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,986   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,986   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:10,992   reading manifest file '/tmp/pip-modern-metadata-qm7_5x8v/moleculekit.egg-info/SOURCES.txt'
2024-07-11T14:16:10,994   reading manifest template 'MANIFEST.in'
2024-07-11T14:16:11,274   no previously-included directories found matching 'moleculekit/test-data'
2024-07-11T14:16:11,275   no previously-included directories found matching 'moleculekit/tests'
2024-07-11T14:16:11,276   no previously-included directories found matching 'package'
2024-07-11T14:16:11,276   adding license file 'LICENSE'
2024-07-11T14:16:11,290   writing manifest file '/tmp/pip-modern-metadata-qm7_5x8v/moleculekit.egg-info/SOURCES.txt'
2024-07-11T14:16:11,299   creating '/tmp/pip-modern-metadata-qm7_5x8v/moleculekit-1.9.1.dist-info'
2024-07-11T14:16:11,493   Preparing metadata (pyproject.toml): finished with status 'done'
2024-07-11T14:16:11,500   Source in /tmp/pip-wheel-nseajkrs/moleculekit_c6174a57457a428ba48762d4eba1a031 has version 1.9.1, which satisfies requirement moleculekit==1.9.1 from https://files.pythonhosted.org/packages/03/ac/c81679ee7481d8dd7e0fa576dafe3963c48c065ab2ca808b53f59693c211/moleculekit-1.9.1.tar.gz
2024-07-11T14:16:11,501   Removed moleculekit==1.9.1 from https://files.pythonhosted.org/packages/03/ac/c81679ee7481d8dd7e0fa576dafe3963c48c065ab2ca808b53f59693c211/moleculekit-1.9.1.tar.gz from build tracker '/tmp/pip-build-tracker-atqtv3tc'
2024-07-11T14:16:11,508 Created temporary directory: /tmp/pip-unpack-ften0cpx
2024-07-11T14:16:11,509 Created temporary directory: /tmp/pip-unpack-0eii25du
2024-07-11T14:16:11,516 Building wheels for collected packages: moleculekit
2024-07-11T14:16:11,522   Created temporary directory: /tmp/pip-wheel-wxh707jd
2024-07-11T14:16:11,522   Destination directory: /tmp/pip-wheel-wxh707jd
2024-07-11T14:16:11,525   Building wheel for moleculekit (pyproject.toml): started
2024-07-11T14:16:11,526   Running command Building wheel for moleculekit (pyproject.toml)
2024-07-11T14:16:13,847   running bdist_wheel
2024-07-11T14:16:13,864   running build
2024-07-11T14:16:13,865   running build_py
2024-07-11T14:16:13,873   creating build
2024-07-11T14:16:13,873   creating build/lib.linux-armv7l-cpython-39
2024-07-11T14:16:13,874   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,876   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,879   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,881   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,883   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,886   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,888   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,891   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,893   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,896   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,898   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,902   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,904   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,910   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,912   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,915   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,919   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,921   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,923   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,926   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,928   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,931   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:13,934   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T14:16:13,936   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T14:16:13,939   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T14:16:13,941   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T14:16:13,945   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,945   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,948   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,950   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,952   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,955   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,958   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,961   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,964   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,967   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,969   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,971   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,975   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,978   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,981   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,984   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T14:16:13,988   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T14:16:13,989   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T14:16:13,992   copying moleculekit/smallmol/smallmolcdp.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T14:16:13,994   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T14:16:13,997   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T14:16:14,001   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T14:16:14,003   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T14:16:14,005   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T14:16:14,008   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-07-11T14:16:14,009   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-07-11T14:16:14,012   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-11T14:16:14,013   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-11T14:16:14,014   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-11T14:16:14,019   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-11T14:16:14,022   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-11T14:16:14,023   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-11T14:16:14,027   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-11T14:16:14,029   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T14:16:14,030   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T14:16:14,032   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T14:16:14,034   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T14:16:14,037   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T14:16:14,039   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,040   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,043   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,045   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,048   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,050   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,053   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,055   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,058   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,060   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,062   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,065   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,068   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,070   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,073   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T14:16:14,075   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T14:16:14,077   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T14:16:14,078   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T14:16:14,080   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T14:16:14,083   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T14:16:14,086   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T14:16:14,087   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T14:16:14,090   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T14:16:14,091   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T14:16:14,094   copying moleculekit/pdbx/reader/BinaryCifReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T14:16:14,097   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T14:16:14,100   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-11T14:16:14,101   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-11T14:16:14,104   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-11T14:16:14,106   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T14:16:14,107   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T14:16:14,109   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T14:16:14,111   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T14:16:14,114   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T14:16:14,116   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-11T14:16:14,117   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-11T14:16:14,119   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-11T14:16:14,121   running egg_info
2024-07-11T14:16:14,127   writing moleculekit.egg-info/PKG-INFO
2024-07-11T14:16:14,130   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-07-11T14:16:14,132   writing requirements to moleculekit.egg-info/requires.txt
2024-07-11T14:16:14,133   writing top-level names to moleculekit.egg-info/top_level.txt
2024-07-11T14:16:14,154   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,154   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,154   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,155   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,155   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,155   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,155   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,155   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,155   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,155   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,156   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,156   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,156   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,156   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,156   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,156   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,156   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,157   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,157   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,157   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,157   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,157   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,157   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,157   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,157   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,158   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,158   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,158   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,158   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,158   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,158   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,158   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,158   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,159   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,159   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,159   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,159   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,159   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,159   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,159   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,159   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,160   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,160   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,160   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,160   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,160   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,160   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,160   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,160   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,160   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,161   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,161   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,161   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,161   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,161   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,161   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,162   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,162   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,162   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,162   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,163   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,164   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,164   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,164   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,164   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,165   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,165   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,165   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,165   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,165   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,166   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,166   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,167   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,167   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,167   dependency /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T14:16:14,173   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-11T14:16:14,182   reading manifest template 'MANIFEST.in'
2024-07-11T14:16:14,474   no previously-included directories found matching 'moleculekit/test-data'
2024-07-11T14:16:14,476   no previously-included directories found matching 'moleculekit/tests'
2024-07-11T14:16:14,477   no previously-included directories found matching 'package'
2024-07-11T14:16:14,477   adding license file 'LICENSE'
2024-07-11T14:16:14,496   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-11T14:16:14,507   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-07-11T14:16:14,507   !!

2024-07-11T14:16:14,508           ********************************************************************************
2024-07-11T14:16:14,508           ############################
2024-07-11T14:16:14,508           # Package would be ignored #
2024-07-11T14:16:14,508           ############################
2024-07-11T14:16:14,508           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-07-11T14:16:14,508           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,508           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,509           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-07-11T14:16:14,509           to the `packages` configuration field.

2024-07-11T14:16:14,509           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,509           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,509           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,509           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,510           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,510           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-07-11T14:16:14,510           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-07-11T14:16:14,510           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,510           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,510           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,510           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,511           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,511           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,511                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,511                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,511                 directory, all directories are treated like packages.
2024-07-11T14:16:14,511           ********************************************************************************

2024-07-11T14:16:14,512   !!
2024-07-11T14:16:14,512     check.warn(importable)
2024-07-11T14:16:14,512   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-07-11T14:16:14,512   !!

2024-07-11T14:16:14,512           ********************************************************************************
2024-07-11T14:16:14,512           ############################
2024-07-11T14:16:14,513           # Package would be ignored #
2024-07-11T14:16:14,513           ############################
2024-07-11T14:16:14,513           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-07-11T14:16:14,513           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,513           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,513           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-07-11T14:16:14,513           to the `packages` configuration field.

2024-07-11T14:16:14,514           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,514           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,514           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,514           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,514           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,514           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-07-11T14:16:14,515           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-07-11T14:16:14,515           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,515           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,515           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,515           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,515           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,516           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,516                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,516                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,516                 directory, all directories are treated like packages.
2024-07-11T14:16:14,516           ********************************************************************************

2024-07-11T14:16:14,516   !!
2024-07-11T14:16:14,517     check.warn(importable)
2024-07-11T14:16:14,517   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-07-11T14:16:14,517   !!

2024-07-11T14:16:14,517           ********************************************************************************
2024-07-11T14:16:14,517           ############################
2024-07-11T14:16:14,517           # Package would be ignored #
2024-07-11T14:16:14,517           ############################
2024-07-11T14:16:14,517           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-07-11T14:16:14,518           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,518           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,518           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-07-11T14:16:14,518           to the `packages` configuration field.

2024-07-11T14:16:14,518           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,518           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,518           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,519           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,519           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,519           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-07-11T14:16:14,519           already explicitly excluding 'moleculekit.cython_utils' via
2024-07-11T14:16:14,519           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,519           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,520           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,520           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,520           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,520           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,520                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,520                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,521                 directory, all directories are treated like packages.
2024-07-11T14:16:14,521           ********************************************************************************

2024-07-11T14:16:14,521   !!
2024-07-11T14:16:14,521     check.warn(importable)
2024-07-11T14:16:14,521   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-07-11T14:16:14,521   !!

2024-07-11T14:16:14,521           ********************************************************************************
2024-07-11T14:16:14,521           ############################
2024-07-11T14:16:14,522           # Package would be ignored #
2024-07-11T14:16:14,522           ############################
2024-07-11T14:16:14,522           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-07-11T14:16:14,522           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,522           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,522           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-07-11T14:16:14,522           to the `packages` configuration field.

2024-07-11T14:16:14,523           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,523           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,523           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,523           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,523           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,523           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-07-11T14:16:14,523           already explicitly excluding 'moleculekit.distance_utils' via
2024-07-11T14:16:14,524           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,524           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,524           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,524           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,524           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,524           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,525                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,525                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,525                 directory, all directories are treated like packages.
2024-07-11T14:16:14,525           ********************************************************************************

2024-07-11T14:16:14,525   !!
2024-07-11T14:16:14,525     check.warn(importable)
2024-07-11T14:16:14,525   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-07-11T14:16:14,525   !!

2024-07-11T14:16:14,526           ********************************************************************************
2024-07-11T14:16:14,526           ############################
2024-07-11T14:16:14,526           # Package would be ignored #
2024-07-11T14:16:14,526           ############################
2024-07-11T14:16:14,526           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-07-11T14:16:14,526           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,526           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,527           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-07-11T14:16:14,527           to the `packages` configuration field.

2024-07-11T14:16:14,527           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,527           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,527           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,527           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,527           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,528           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-07-11T14:16:14,528           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-07-11T14:16:14,528           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,528           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,528           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,528           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,528           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,529           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,529                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,529                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,529                 directory, all directories are treated like packages.
2024-07-11T14:16:14,529           ********************************************************************************

2024-07-11T14:16:14,530   !!
2024-07-11T14:16:14,530     check.warn(importable)
2024-07-11T14:16:14,530   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-07-11T14:16:14,530   !!

2024-07-11T14:16:14,530           ********************************************************************************
2024-07-11T14:16:14,530           ############################
2024-07-11T14:16:14,530           # Package would be ignored #
2024-07-11T14:16:14,530           ############################
2024-07-11T14:16:14,531           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-07-11T14:16:14,531           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,531           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,531           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-07-11T14:16:14,531           to the `packages` configuration field.

2024-07-11T14:16:14,531           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,531           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,532           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,532           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,532           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,532           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-07-11T14:16:14,532           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-07-11T14:16:14,532           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,532           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,533           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,533           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,533           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,533           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,533                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,534                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,534                 directory, all directories are treated like packages.
2024-07-11T14:16:14,534           ********************************************************************************

2024-07-11T14:16:14,534   !!
2024-07-11T14:16:14,534     check.warn(importable)
2024-07-11T14:16:14,534   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-07-11T14:16:14,534   !!

2024-07-11T14:16:14,535           ********************************************************************************
2024-07-11T14:16:14,535           ############################
2024-07-11T14:16:14,535           # Package would be ignored #
2024-07-11T14:16:14,535           ############################
2024-07-11T14:16:14,535           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-07-11T14:16:14,535           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,535           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,535           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-07-11T14:16:14,535           to the `packages` configuration field.

2024-07-11T14:16:14,536           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,536           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,536           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,536           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,536           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,537           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-07-11T14:16:14,537           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-07-11T14:16:14,537           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,537           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,537           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,537           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,537           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,538           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,538                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,538                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,538                 directory, all directories are treated like packages.
2024-07-11T14:16:14,538           ********************************************************************************

2024-07-11T14:16:14,538   !!
2024-07-11T14:16:14,538     check.warn(importable)
2024-07-11T14:16:14,539   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-07-11T14:16:14,539   !!

2024-07-11T14:16:14,539           ********************************************************************************
2024-07-11T14:16:14,539           ############################
2024-07-11T14:16:14,539           # Package would be ignored #
2024-07-11T14:16:14,539           ############################
2024-07-11T14:16:14,539           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-07-11T14:16:14,539           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,540           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,540           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-07-11T14:16:14,540           to the `packages` configuration field.

2024-07-11T14:16:14,540           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,540           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,540           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,541           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,541           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,541           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-07-11T14:16:14,541           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-07-11T14:16:14,541           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,541           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,541           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,542           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,542           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,542           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,542                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,542                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,542                 directory, all directories are treated like packages.
2024-07-11T14:16:14,543           ********************************************************************************

2024-07-11T14:16:14,543   !!
2024-07-11T14:16:14,543     check.warn(importable)
2024-07-11T14:16:14,543   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-07-11T14:16:14,543   !!

2024-07-11T14:16:14,543           ********************************************************************************
2024-07-11T14:16:14,543           ############################
2024-07-11T14:16:14,544           # Package would be ignored #
2024-07-11T14:16:14,544           ############################
2024-07-11T14:16:14,544           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-07-11T14:16:14,544           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,544           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,544           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-07-11T14:16:14,544           to the `packages` configuration field.

2024-07-11T14:16:14,545           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,545           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,545           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,545           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,545           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,545           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-07-11T14:16:14,545           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-07-11T14:16:14,546           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,546           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,546           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,546           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,546           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,547           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,547                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,547                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,547                 directory, all directories are treated like packages.
2024-07-11T14:16:14,547           ********************************************************************************

2024-07-11T14:16:14,547   !!
2024-07-11T14:16:14,548     check.warn(importable)
2024-07-11T14:16:14,548   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-07-11T14:16:14,548   !!

2024-07-11T14:16:14,548           ********************************************************************************
2024-07-11T14:16:14,548           ############################
2024-07-11T14:16:14,548           # Package would be ignored #
2024-07-11T14:16:14,548           ############################
2024-07-11T14:16:14,549           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-07-11T14:16:14,549           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,549           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,549           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-07-11T14:16:14,549           to the `packages` configuration field.

2024-07-11T14:16:14,549           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,549           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,549           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,550           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,550           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,550           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-07-11T14:16:14,550           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-07-11T14:16:14,550           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,550           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,551           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,551           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,551           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,551           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,551                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,551                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,552                 directory, all directories are treated like packages.
2024-07-11T14:16:14,552           ********************************************************************************

2024-07-11T14:16:14,552   !!
2024-07-11T14:16:14,552     check.warn(importable)
2024-07-11T14:16:14,552   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-07-11T14:16:14,552   !!

2024-07-11T14:16:14,552           ********************************************************************************
2024-07-11T14:16:14,553           ############################
2024-07-11T14:16:14,553           # Package would be ignored #
2024-07-11T14:16:14,553           ############################
2024-07-11T14:16:14,553           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-07-11T14:16:14,553           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,553           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,553           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-07-11T14:16:14,553           to the `packages` configuration field.

2024-07-11T14:16:14,554           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,554           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,554           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,554           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,554           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,554           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-07-11T14:16:14,555           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-07-11T14:16:14,555           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,555           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,555           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,555           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,555           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,556           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,556                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,556                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,556                 directory, all directories are treated like packages.
2024-07-11T14:16:14,556           ********************************************************************************

2024-07-11T14:16:14,556   !!
2024-07-11T14:16:14,556     check.warn(importable)
2024-07-11T14:16:14,557   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-07-11T14:16:14,557   !!

2024-07-11T14:16:14,557           ********************************************************************************
2024-07-11T14:16:14,557           ############################
2024-07-11T14:16:14,557           # Package would be ignored #
2024-07-11T14:16:14,557           ############################
2024-07-11T14:16:14,557           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-07-11T14:16:14,557           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,558           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,558           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-07-11T14:16:14,558           to the `packages` configuration field.

2024-07-11T14:16:14,558           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,558           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,558           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,559           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,559           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,559           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-07-11T14:16:14,559           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-07-11T14:16:14,559           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,559           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,559           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,560           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,560           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,560           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,560                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,560                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,560                 directory, all directories are treated like packages.
2024-07-11T14:16:14,561           ********************************************************************************

2024-07-11T14:16:14,561   !!
2024-07-11T14:16:14,561     check.warn(importable)
2024-07-11T14:16:14,561   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-07-11T14:16:14,561   !!

2024-07-11T14:16:14,561           ********************************************************************************
2024-07-11T14:16:14,561           ############################
2024-07-11T14:16:14,562           # Package would be ignored #
2024-07-11T14:16:14,562           ############################
2024-07-11T14:16:14,562           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-07-11T14:16:14,562           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,562           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,562           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-07-11T14:16:14,562           to the `packages` configuration field.

2024-07-11T14:16:14,563           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,563           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,563           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,563           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,563           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,564           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-07-11T14:16:14,564           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-07-11T14:16:14,564           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,564           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,564           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,564           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,564           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,565           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,565                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,565                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,565                 directory, all directories are treated like packages.
2024-07-11T14:16:14,565           ********************************************************************************

2024-07-11T14:16:14,565   !!
2024-07-11T14:16:14,565     check.warn(importable)
2024-07-11T14:16:14,566   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-07-11T14:16:14,566   !!

2024-07-11T14:16:14,566           ********************************************************************************
2024-07-11T14:16:14,566           ############################
2024-07-11T14:16:14,566           # Package would be ignored #
2024-07-11T14:16:14,566           ############################
2024-07-11T14:16:14,566           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-07-11T14:16:14,567           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,567           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,567           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-07-11T14:16:14,567           to the `packages` configuration field.

2024-07-11T14:16:14,567           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,567           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,568           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,568           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,568           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,568           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-07-11T14:16:14,568           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-07-11T14:16:14,568           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,569           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,569           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,569           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,569           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,570           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,570                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,570                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,570                 directory, all directories are treated like packages.
2024-07-11T14:16:14,570           ********************************************************************************

2024-07-11T14:16:14,570   !!
2024-07-11T14:16:14,570     check.warn(importable)
2024-07-11T14:16:14,571   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-07-11T14:16:14,571   !!

2024-07-11T14:16:14,571           ********************************************************************************
2024-07-11T14:16:14,571           ############################
2024-07-11T14:16:14,571           # Package would be ignored #
2024-07-11T14:16:14,571           ############################
2024-07-11T14:16:14,571           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-07-11T14:16:14,572           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,572           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,572           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-07-11T14:16:14,572           to the `packages` configuration field.

2024-07-11T14:16:14,572           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,572           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,572           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,573           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,573           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,573           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-07-11T14:16:14,573           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-07-11T14:16:14,573           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,574           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,574           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,574           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,574           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,575           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,575                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,575                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,575                 directory, all directories are treated like packages.
2024-07-11T14:16:14,575           ********************************************************************************

2024-07-11T14:16:14,575   !!
2024-07-11T14:16:14,575     check.warn(importable)
2024-07-11T14:16:14,576   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-07-11T14:16:14,576   !!

2024-07-11T14:16:14,576           ********************************************************************************
2024-07-11T14:16:14,576           ############################
2024-07-11T14:16:14,576           # Package would be ignored #
2024-07-11T14:16:14,576           ############################
2024-07-11T14:16:14,576           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-07-11T14:16:14,577           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,577           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,577           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-07-11T14:16:14,577           to the `packages` configuration field.

2024-07-11T14:16:14,577           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,577           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,578           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,578           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,578           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,578           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-07-11T14:16:14,578           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-07-11T14:16:14,579           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,579           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,579           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,579           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,579           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,580           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,580                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,580                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,580                 directory, all directories are treated like packages.
2024-07-11T14:16:14,580           ********************************************************************************

2024-07-11T14:16:14,580   !!
2024-07-11T14:16:14,580     check.warn(importable)
2024-07-11T14:16:14,580   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-07-11T14:16:14,581   !!

2024-07-11T14:16:14,581           ********************************************************************************
2024-07-11T14:16:14,581           ############################
2024-07-11T14:16:14,581           # Package would be ignored #
2024-07-11T14:16:14,581           ############################
2024-07-11T14:16:14,581           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-07-11T14:16:14,581           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,582           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,582           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-07-11T14:16:14,582           to the `packages` configuration field.

2024-07-11T14:16:14,582           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,582           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,582           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,583           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,583           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,583           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-07-11T14:16:14,583           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-07-11T14:16:14,583           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,583           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,584           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,584           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,584           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,584           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,584                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,585                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,585                 directory, all directories are treated like packages.
2024-07-11T14:16:14,585           ********************************************************************************

2024-07-11T14:16:14,586   !!
2024-07-11T14:16:14,593     check.warn(importable)
2024-07-11T14:16:14,593   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-07-11T14:16:14,593   !!

2024-07-11T14:16:14,594           ********************************************************************************
2024-07-11T14:16:14,594           ############################
2024-07-11T14:16:14,594           # Package would be ignored #
2024-07-11T14:16:14,594           ############################
2024-07-11T14:16:14,594           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-07-11T14:16:14,594           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,595           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,595           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-07-11T14:16:14,595           to the `packages` configuration field.

2024-07-11T14:16:14,595           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,595           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,595           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,595           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,596           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,596           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-07-11T14:16:14,596           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-07-11T14:16:14,596           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,596           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,596           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,597           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,597           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,597           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,597                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,598                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,598                 directory, all directories are treated like packages.
2024-07-11T14:16:14,598           ********************************************************************************

2024-07-11T14:16:14,598   !!
2024-07-11T14:16:14,598     check.warn(importable)
2024-07-11T14:16:14,598   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-07-11T14:16:14,598   !!

2024-07-11T14:16:14,599           ********************************************************************************
2024-07-11T14:16:14,599           ############################
2024-07-11T14:16:14,599           # Package would be ignored #
2024-07-11T14:16:14,599           ############################
2024-07-11T14:16:14,599           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-07-11T14:16:14,599           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,600           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,600           package, please make sure that 'moleculekit.share' is explicitly added
2024-07-11T14:16:14,600           to the `packages` configuration field.

2024-07-11T14:16:14,600           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,600           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,600           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,600           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,601           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,601           If you don't want 'moleculekit.share' to be distributed and are
2024-07-11T14:16:14,601           already explicitly excluding 'moleculekit.share' via
2024-07-11T14:16:14,601           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,601           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,601           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,601           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,602           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,602           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,602                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,602                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,602                 directory, all directories are treated like packages.
2024-07-11T14:16:14,603           ********************************************************************************

2024-07-11T14:16:14,603   !!
2024-07-11T14:16:14,603     check.warn(importable)
2024-07-11T14:16:14,603   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-07-11T14:16:14,603   !!

2024-07-11T14:16:14,603           ********************************************************************************
2024-07-11T14:16:14,603           ############################
2024-07-11T14:16:14,604           # Package would be ignored #
2024-07-11T14:16:14,604           ############################
2024-07-11T14:16:14,604           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-07-11T14:16:14,604           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,604           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,604           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-07-11T14:16:14,604           to the `packages` configuration field.

2024-07-11T14:16:14,605           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,605           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,605           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,605           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,605           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,606           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-07-11T14:16:14,606           already explicitly excluding 'moleculekit.share.atomselect' via
2024-07-11T14:16:14,606           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,606           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,606           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,606           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,607           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,607           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,607                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,607                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,607                 directory, all directories are treated like packages.
2024-07-11T14:16:14,607           ********************************************************************************

2024-07-11T14:16:14,608   !!
2024-07-11T14:16:14,608     check.warn(importable)
2024-07-11T14:16:14,608   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-07-11T14:16:14,608   !!

2024-07-11T14:16:14,608           ********************************************************************************
2024-07-11T14:16:14,608           ############################
2024-07-11T14:16:14,608           # Package would be ignored #
2024-07-11T14:16:14,609           ############################
2024-07-11T14:16:14,609           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-07-11T14:16:14,609           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,609           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,609           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-07-11T14:16:14,609           to the `packages` configuration field.

2024-07-11T14:16:14,610           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,610           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,610           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,610           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,610           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,611           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-07-11T14:16:14,611           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-07-11T14:16:14,611           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,611           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,611           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,611           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,612           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,612           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,612                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,612                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,612                 directory, all directories are treated like packages.
2024-07-11T14:16:14,612           ********************************************************************************

2024-07-11T14:16:14,613   !!
2024-07-11T14:16:14,613     check.warn(importable)
2024-07-11T14:16:14,613   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-07-11T14:16:14,613   !!

2024-07-11T14:16:14,613           ********************************************************************************
2024-07-11T14:16:14,613           ############################
2024-07-11T14:16:14,614           # Package would be ignored #
2024-07-11T14:16:14,614           ############################
2024-07-11T14:16:14,614           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-07-11T14:16:14,614           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,614           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,614           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-07-11T14:16:14,614           to the `packages` configuration field.

2024-07-11T14:16:14,615           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,615           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,615           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,615           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,615           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,616           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-07-11T14:16:14,616           already explicitly excluding 'moleculekit.tmalign' via
2024-07-11T14:16:14,616           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,616           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,616           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,616           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,617           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,617           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,617                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,617                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,617                 directory, all directories are treated like packages.
2024-07-11T14:16:14,617           ********************************************************************************

2024-07-11T14:16:14,618   !!
2024-07-11T14:16:14,618     check.warn(importable)
2024-07-11T14:16:14,618   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-07-11T14:16:14,618   !!

2024-07-11T14:16:14,618           ********************************************************************************
2024-07-11T14:16:14,618           ############################
2024-07-11T14:16:14,618           # Package would be ignored #
2024-07-11T14:16:14,619           ############################
2024-07-11T14:16:14,619           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-07-11T14:16:14,619           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,619           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,619           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-07-11T14:16:14,619           to the `packages` configuration field.

2024-07-11T14:16:14,619           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,620           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,620           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,620           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,620           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,620           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-07-11T14:16:14,620           already explicitly excluding 'moleculekit.tmalign.include' via
2024-07-11T14:16:14,621           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,621           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,621           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,621           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,621           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,622           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,622                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,622                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,622                 directory, all directories are treated like packages.
2024-07-11T14:16:14,622           ********************************************************************************

2024-07-11T14:16:14,623   !!
2024-07-11T14:16:14,623     check.warn(importable)
2024-07-11T14:16:14,623   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-07-11T14:16:14,623   !!

2024-07-11T14:16:14,623           ********************************************************************************
2024-07-11T14:16:14,623           ############################
2024-07-11T14:16:14,623           # Package would be ignored #
2024-07-11T14:16:14,624           ############################
2024-07-11T14:16:14,624           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-07-11T14:16:14,624           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,624           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,624           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-07-11T14:16:14,624           to the `packages` configuration field.

2024-07-11T14:16:14,625           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,625           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,625           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,625           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,625           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,626           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-07-11T14:16:14,626           already explicitly excluding 'moleculekit.tmalign.src' via
2024-07-11T14:16:14,626           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,626           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,626           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,627           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,627           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,627           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,627                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,627                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,628                 directory, all directories are treated like packages.
2024-07-11T14:16:14,628           ********************************************************************************

2024-07-11T14:16:14,628   !!
2024-07-11T14:16:14,628     check.warn(importable)
2024-07-11T14:16:14,628   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-07-11T14:16:14,628   !!

2024-07-11T14:16:14,629           ********************************************************************************
2024-07-11T14:16:14,629           ############################
2024-07-11T14:16:14,629           # Package would be ignored #
2024-07-11T14:16:14,629           ############################
2024-07-11T14:16:14,629           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-07-11T14:16:14,629           but it is absent from setuptools' `packages` configuration.

2024-07-11T14:16:14,630           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T14:16:14,630           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-07-11T14:16:14,630           to the `packages` configuration field.

2024-07-11T14:16:14,630           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T14:16:14,630           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T14:16:14,630           instead of `find_packages(...)`/`find:`).

2024-07-11T14:16:14,631           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T14:16:14,631           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T14:16:14,631           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-07-11T14:16:14,631           already explicitly excluding 'moleculekit.wrapping' via
2024-07-11T14:16:14,631           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T14:16:14,632           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T14:16:14,632           combination with a more fine grained `package-data` configuration.

2024-07-11T14:16:14,632           You can read more about "package data files" on setuptools documentation page:

2024-07-11T14:16:14,632           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T14:16:14,633           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T14:16:14,633                 even if it does not contain any `.py` files.
2024-07-11T14:16:14,633                 On the other hand, currently there is no concept of package data
2024-07-11T14:16:14,633                 directory, all directories are treated like packages.
2024-07-11T14:16:14,633           ********************************************************************************

2024-07-11T14:16:14,633   !!
2024-07-11T14:16:14,634     check.warn(importable)
2024-07-11T14:16:14,634   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:14,634   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:14,634   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-11T14:16:14,634   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-11T14:16:14,634   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-11T14:16:14,634   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-11T14:16:14,634   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-11T14:16:14,648   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-11T14:16:14,650   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-11T14:16:14,651   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-11T14:16:14,680   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-11T14:16:14,682   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-11T14:16:14,683   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-11T14:16:14,706   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-11T14:16:14,708   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-11T14:16:14,710   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-11T14:16:14,737   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-11T14:16:14,739   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-11T14:16:14,740   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-11T14:16:14,743   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-11T14:16:14,746   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-11T14:16:14,948   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-07-11T14:16:14,949   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-07-11T14:16:14,951   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-07-11T14:16:14,952   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,953   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,956   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,959   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,961   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,964   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,968   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,970   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,973   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,975   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,979   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,981   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,984   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,987   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,990   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,993   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,996   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:14,998   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,001   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,003   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,007   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,009   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,013   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,015   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,018   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,020   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,024   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,026   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,029   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,031   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,034   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,037   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,040   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,042   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,046   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,048   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,051   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,054   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,056   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,058   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,061   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,063   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,065   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,067   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,069   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,072   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,074   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,076   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,079   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,081   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,084   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,085   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,088   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,090   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,093   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,095   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,098   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,099   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,102   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,105   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,107   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,109   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,111   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,113   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,116   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,118   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,121   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,123   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,856   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,860   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,864   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,869   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,874   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,878   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,882   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,886   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,890   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,895   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,899   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,903   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,907   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,916   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,920   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,924   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,929   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,933   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,945   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,949   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,953   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,957   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,968   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,972   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,975   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,979   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,983   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,986   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,990   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,994   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:15,997   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,001   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,004   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,009   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,012   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,015   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,019   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,023   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,027   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,031   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,034   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,037   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,041   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,044   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,048   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,051   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,055   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,059   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,062   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,066   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,070   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,073   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,076   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,080   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,083   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,087   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,090   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,094   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,097   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,100   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,104   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,108   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,117   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,120   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,125   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,128   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,131   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,135   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,138   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,142   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,145   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,148   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,151   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,155   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,165   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,168   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,172   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,175   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,178   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,181   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,185   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,189   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,193   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,196   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,200   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,203   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,206   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,210   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,214   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,217   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,220   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,223   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,228   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,231   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,234   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,238   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,241   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,244   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,247   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,251   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,254   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,258   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,261   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,264   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,268   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,272   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,275   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,278   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T14:16:16,282   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T14:16:16,283   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T14:16:16,314   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T14:16:16,318   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T14:16:16,320   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-07-11T14:16:16,322   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-07-11T14:16:16,325   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-11T14:16:16,326   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-11T14:16:16,355   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-11T14:16:16,356   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-11T14:16:16,389   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-11T14:16:16,392   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T14:16:16,394   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T14:16:16,419   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T14:16:16,423   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T14:16:16,426   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-11T14:16:16,428   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-11T14:16:16,432   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-11T14:16:16,436   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-11T14:16:16,441   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-11T14:16:16,453   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-11T14:16:16,458   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T14:16:16,460   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T14:16:16,481   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T14:16:16,485   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T14:16:16,488   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T14:16:16,489   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T14:16:16,493   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T14:16:16,496   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T14:16:16,500   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T14:16:16,502   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T14:16:16,506   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-11T14:16:16,507   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-11T14:16:16,512   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T14:16:16,513   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T14:16:16,546   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T14:16:16,550   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T14:16:16,553   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T14:16:16,556   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T14:16:16,588   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T14:16:16,590   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T14:16:16,592   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T14:16:16,593   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T14:16:16,595   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T14:16:16,598   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T14:16:16,601   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T14:16:16,603   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T14:16:16,606   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T14:16:16,608   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T14:16:16,609   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T14:16:16,612   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T14:16:16,616   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T14:16:16,619   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T14:16:16,621   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T14:16:16,624   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-11T14:16:16,626   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-11T14:16:16,658   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-11T14:16:16,661   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-11T14:16:16,662   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-11T14:16:16,688   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-11T14:16:16,691   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-11T14:16:16,692   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-11T14:16:16,719   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-11T14:16:16,721   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-11T14:16:16,723   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-11T14:16:16,754   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-11T14:16:16,768   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-07-11T14:16:16,768   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.9.1'
2024-07-11T14:16:16,768   running build_ext
2024-07-11T14:16:16,987   building 'moleculekit.interactions.hbonds' extension
2024-07-11T14:16:17,206   creating build/temp.linux-armv7l-cpython-39
2024-07-11T14:16:17,414   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-07-11T14:16:17,604   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-11T14:16:17,697   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-11T14:16:17,970   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-07-11T14:16:18,757   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:16:18,757                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:16:18,757                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:16:18,758                    from moleculekit/interactions/hbonds/hbonds.cpp:1265:
2024-07-11T14:16:18,758   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:16:18,758      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:16:18,758         |  ^~~~~~~
2024-07-11T14:16:19,220   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T14:16:19,220                    from moleculekit/interactions/hbonds/hbonds.cpp:1269:
2024-07-11T14:16:19,220   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T14:16:19,221   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T14:16:19,221     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T14:16:19,221         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T14:16:41,852   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-07-11T14:16:41,852   moleculekit/interactions/hbonds/hbonds.cpp:21469:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:16:41,853   21469 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-07-11T14:16:41,853         |                                                    ^~~~~~~~~~~~~~~
2024-07-11T14:16:41,853   moleculekit/interactions/hbonds/hbonds.cpp:20486:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-07-11T14:16:41,853   20486 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-07-11T14:16:41,853         |                                                         ^~~~~~~~~~~~~~~
2024-07-11T14:16:45,030   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:16:45,359   building 'moleculekit.interactions.pipi' extension
2024-07-11T14:16:45,360   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-11T14:16:45,362   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-07-11T14:16:45,630   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:16:45,630                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:16:45,630                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:16:45,630                    from moleculekit/interactions/pipi/pipi.cpp:1265:
2024-07-11T14:16:45,631   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:16:45,631      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:16:45,631         |  ^~~~~~~
2024-07-11T14:16:46,073   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T14:16:46,073                    from moleculekit/interactions/pipi/pipi.cpp:1269:
2024-07-11T14:16:46,073   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T14:16:46,073   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T14:16:46,073     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T14:16:46,074         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T14:17:14,006   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:17:14,329   building 'moleculekit.interactions.cationpi' extension
2024-07-11T14:17:14,330   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-11T14:17:14,331   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-07-11T14:17:14,588   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:17:14,589                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:17:14,589                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:17:14,589                    from moleculekit/interactions/cationpi/cationpi.cpp:1265:
2024-07-11T14:17:14,589   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:17:14,589      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:17:14,589         |  ^~~~~~~
2024-07-11T14:17:15,058   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T14:17:15,058                    from moleculekit/interactions/cationpi/cationpi.cpp:1269:
2024-07-11T14:17:15,058   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T14:17:15,058   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T14:17:15,059     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T14:17:15,059         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T14:17:44,562   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:17:44,911   building 'moleculekit.interactions.sigmahole' extension
2024-07-11T14:17:44,912   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-11T14:17:44,913   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-07-11T14:17:45,175   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:17:45,175                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:17:45,175                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:17:45,175                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1265:
2024-07-11T14:17:45,176   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:17:45,176      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:17:45,176         |  ^~~~~~~
2024-07-11T14:17:45,624   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T14:17:45,624                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1269:
2024-07-11T14:17:45,625   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T14:17:45,625   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T14:17:45,625     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T14:17:45,625         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:12,652   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:18:12,971   building 'moleculekit.wrapping' extension
2024-07-11T14:18:12,972   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-11T14:18:12,973   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-07-11T14:18:13,229   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:18:13,229                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:18:13,229                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:18:13,229                    from moleculekit/wrapping/wrapping.cpp:1265:
2024-07-11T14:18:13,229   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:18:13,229      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:18:13,230         |  ^~~~~~~
2024-07-11T14:18:13,673   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T14:18:13,673                    from moleculekit/wrapping/wrapping.cpp:1269:
2024-07-11T14:18:13,673   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T14:18:13,673   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T14:18:13,673     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T14:18:13,674         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:39,152   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:18:39,369   building 'moleculekit.bondguesser_utils' extension
2024-07-11T14:18:39,370   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-11T14:18:39,371   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-07-11T14:18:39,623   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:18:39,624                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:18:39,624                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:18:39,624                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1265:
2024-07-11T14:18:39,624   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:18:39,624      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:18:39,624         |  ^~~~~~~
2024-07-11T14:18:40,063   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T14:18:40,063                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1269:
2024-07-11T14:18:40,063   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T14:18:40,063   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T14:18:40,063     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T14:18:40,064         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,182   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-07-11T14:18:41,182   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20255:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-11T14:18:41,182   20255 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-07-11T14:18:41,183         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T14:18:41,183   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20267:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-11T14:18:41,183   20267 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-07-11T14:18:41,183         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T14:18:41,183   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20279:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-11T14:18:41,183   20279 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-07-11T14:18:41,183         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T14:18:41,184   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20318:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,184   20318 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T14:18:41,184         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,184   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20357:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,184   20357 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T14:18:41,184         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,184   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20396:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,185   20396 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T14:18:41,185         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,185   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20435:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,185   20435 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T14:18:41,185         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,185   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20441:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,185   20441 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T14:18:41,186         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,186   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20482:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,186   20482 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T14:18:41,186         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,186   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20488:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,186   20488 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T14:18:41,187         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,187   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20529:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,187   20529 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T14:18:41,187         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,187   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20535:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,187   20535 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T14:18:41,187         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,187   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20576:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,188   20576 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T14:18:41,188         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,188   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20629:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,188   20629 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T14:18:41,188         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,188   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20676:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,188   20676 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T14:18:41,189         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,189   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20717:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,189   20717 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T14:18:41,189         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,189   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20723:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,189   20723 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T14:18:41,189         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,190   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20729:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,190   20729 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T14:18:41,190         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,190   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20776:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,190   20776 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T14:18:41,190         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,190   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20782:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,191   20782 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T14:18:41,191         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,191   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20823:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,191   20823 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T14:18:41,191         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,191   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20835:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,191   20835 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T14:18:41,192         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,192   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20888:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T14:18:41,192   20888 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T14:18:41,192         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,211   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-07-11T14:18:41,211   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21510:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T14:18:41,211   21510 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-07-11T14:18:41,211         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-07-11T14:18:41,212   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21547:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T14:18:41,212   21547 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-07-11T14:18:41,212         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-07-11T14:19:04,289   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:19:04,602   building 'moleculekit.atomselect_utils' extension
2024-07-11T14:19:04,603   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-11T14:19:04,604   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-07-11T14:19:04,896   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:19:04,896                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:19:04,896                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:19:04,897                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1282:
2024-07-11T14:19:04,897   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:19:04,897      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:19:04,897         |  ^~~~~~~
2024-07-11T14:19:05,353   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T14:19:05,353                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1286:
2024-07-11T14:19:05,353   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T14:19:05,353   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T14:19:05,354     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T14:19:05,354         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T14:19:06,613   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-07-11T14:19:06,613   moleculekit/atomselect_utils/atomselect_utils.cpp:23709:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T14:19:06,614   23709 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-07-11T14:19:06,614         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-07-11T14:19:06,619   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-07-11T14:19:06,619   moleculekit/atomselect_utils/atomselect_utils.cpp:23961:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T14:19:06,619   23961 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-07-11T14:19:06,619         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T14:19:06,624   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-07-11T14:19:06,624   moleculekit/atomselect_utils/atomselect_utils.cpp:24228:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T14:19:06,624   24228 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-07-11T14:19:06,625         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T14:19:36,803   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:19:37,138   building 'moleculekit.distance_utils' extension
2024-07-11T14:19:37,139   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-11T14:19:37,140   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-07-11T14:19:37,374   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:19:37,374                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:19:37,374                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:19:37,374                    from moleculekit/distance_utils/distance_utils.cpp:1265:
2024-07-11T14:19:37,375   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:19:37,375      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:19:37,375         |  ^~~~~~~
2024-07-11T14:19:37,860   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T14:19:37,860                    from moleculekit/distance_utils/distance_utils.cpp:1269:
2024-07-11T14:19:37,860   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T14:19:37,860   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T14:19:37,860     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T14:19:37,860         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T14:19:39,042   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-07-11T14:19:39,042   moleculekit/distance_utils/distance_utils.cpp:21813:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T14:19:39,042   21813 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-07-11T14:19:39,042         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T14:19:39,042   moleculekit/distance_utils/distance_utils.cpp:21825:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T14:19:39,043   21825 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-07-11T14:19:39,043         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T14:20:12,092   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:20:12,436   building 'moleculekit.occupancy_utils' extension
2024-07-11T14:20:12,437   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-11T14:20:12,438   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-07-11T14:20:12,679   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:20:12,680                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:20:12,680                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:20:12,680                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1265:
2024-07-11T14:20:12,680   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:20:12,680      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:20:12,680         |  ^~~~~~~
2024-07-11T14:20:13,115   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T14:20:13,115                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1269:
2024-07-11T14:20:13,115   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T14:20:13,116   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T14:20:13,116     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T14:20:13,116         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T14:20:35,794   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:20:36,004   building 'moleculekit.cython_utils' extension
2024-07-11T14:20:36,005   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-11T14:20:36,006   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-07-11T14:20:36,245   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:20:36,245                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:20:36,246                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:20:36,246                    from moleculekit/cython_utils/cython_utils.cpp:1265:
2024-07-11T14:20:36,246   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:20:36,246      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:20:36,246         |  ^~~~~~~
2024-07-11T14:20:36,676   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T14:20:36,676                    from moleculekit/cython_utils/cython_utils.cpp:1269:
2024-07-11T14:20:36,677   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T14:20:36,677   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T14:20:36,677     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T14:20:36,677         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T14:21:01,675   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:21:01,997   building 'moleculekit.xtc' extension
2024-07-11T14:21:01,998   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T14:21:01,998   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T14:21:01,999   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T14:21:02,000   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-07-11T14:21:02,239   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,239      66 |  "OK",
2024-07-11T14:21:02,239         |  ^~~~
2024-07-11T14:21:02,240   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,240      67 |  "Header",
2024-07-11T14:21:02,240         |  ^~~~~~~~
2024-07-11T14:21:02,240   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,240      68 |  "String",
2024-07-11T14:21:02,240         |  ^~~~~~~~
2024-07-11T14:21:02,240   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,241      69 |  "Double",
2024-07-11T14:21:02,241         |  ^~~~~~~~
2024-07-11T14:21:02,241   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,241      70 |  "Integer",
2024-07-11T14:21:02,241         |  ^~~~~~~~~
2024-07-11T14:21:02,241   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,241      71 |  "Float",
2024-07-11T14:21:02,241         |  ^~~~~~~
2024-07-11T14:21:02,242   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,242      72 |  "Unsigned integer",
2024-07-11T14:21:02,242         |  ^~~~~~~~~~~~~~~~~~
2024-07-11T14:21:02,242   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,242      73 |  "Compressed 3D coordinate",
2024-07-11T14:21:02,242         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:21:02,242   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,243      74 |  "Closing file",
2024-07-11T14:21:02,243         |  ^~~~~~~~~~~~~~
2024-07-11T14:21:02,243   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,243      75 |  "Magic number",
2024-07-11T14:21:02,243         |  ^~~~~~~~~~~~~~
2024-07-11T14:21:02,243   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,243      76 |  "Not enough memory",
2024-07-11T14:21:02,244         |  ^~~~~~~~~~~~~~~~~~~
2024-07-11T14:21:02,244   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,244      77 |  "End of file",
2024-07-11T14:21:02,244         |  ^~~~~~~~~~~~~
2024-07-11T14:21:02,244   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:02,244      78 |  "File not found"
2024-07-11T14:21:02,244         |  ^~~~~~~~~~~~~~~~
2024-07-11T14:21:02,248   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-07-11T14:21:02,249   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,249     459 |     while (size >= num && num_of_bits < 32)
2024-07-11T14:21:02,249         |            ~~~~~^~~~~~
2024-07-11T14:21:02,249   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-07-11T14:21:02,249   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:02,249     505 |     while (bytes[num_of_bytes] >= num)
2024-07-11T14:21:02,250         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-11T14:21:02,251   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-07-11T14:21:02,252   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,252     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-07-11T14:21:02,252         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-07-11T14:21:02,252   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,252     616 |   for (i = 0; i < num_of_bytes; i++)
2024-07-11T14:21:02,252         |               ~~^~~~~~~~~~~~~~
2024-07-11T14:21:02,253   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,253     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-07-11T14:21:02,253         |               ~~^~~~~~~~~~~~~~~~
2024-07-11T14:21:02,253   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-07-11T14:21:02,253   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:02,253     664 |   if (lastbits < num_of_bits)
2024-07-11T14:21:02,253         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-07-11T14:21:02,257   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-07-11T14:21:02,257   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:02,257     785 |  if(size3>xfp->buf1size)
2024-07-11T14:21:02,257         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T14:21:02,259   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:02,259     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T14:21:02,259         |                   ^
2024-07-11T14:21:02,261   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,261     932 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T14:21:02,262         |        ~~~~~~~~~^~~~~~~~
2024-07-11T14:21:02,262   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,262     935 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T14:21:02,262         |        ~~~~~~~~~^~~~~~~~
2024-07-11T14:21:02,262   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,262     938 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T14:21:02,262         |        ~~~~~~~~~^~~~~~~~
2024-07-11T14:21:02,263   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,263     945 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T14:21:02,263         |        ~~~~~~~~~^~~~~~~~
2024-07-11T14:21:02,263   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,263     948 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T14:21:02,263         |        ~~~~~~~~~^~~~~~~~
2024-07-11T14:21:02,263   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,264     951 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T14:21:02,264         |        ~~~~~~~~~^~~~~~~~
2024-07-11T14:21:02,264   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-11T14:21:02,264     756 |  int smallidx,  minidx, maxidx;
2024-07-11T14:21:02,264         |                 ^~~~~~
2024-07-11T14:21:02,264   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-11T14:21:02,264     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-11T14:21:02,264         |                         ^~~~~~
2024-07-11T14:21:02,264   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-11T14:21:02,265     763 |  int errval=1;
2024-07-11T14:21:02,265         |      ^~~~~~
2024-07-11T14:21:02,265   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-07-11T14:21:02,266   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:02,266    1011 |  if(size3>xfp->buf1size)
2024-07-11T14:21:02,266         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T14:21:02,268   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,268    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T14:21:02,268         |                     ~~~~~~~~^~~~~~~
2024-07-11T14:21:02,268   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,269    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T14:21:02,269         |                    ~~~~~~~~^~~~~~~
2024-07-11T14:21:02,269   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,269    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T14:21:02,269         |                    ~~~~~~~~^~~~~~~
2024-07-11T14:21:02,271   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,271    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-07-11T14:21:02,271         |                  ^
2024-07-11T14:21:02,271   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:02,271    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T14:21:02,271         |                   ^
2024-07-11T14:21:02,275   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,275    1275 |  if(tmp==(unsigned int)buf2[0])
2024-07-11T14:21:02,275         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:21:02,275   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-11T14:21:02,275    1001 |  int errval;
2024-07-11T14:21:02,276         |      ^~~~~~
2024-07-11T14:21:02,278   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-07-11T14:21:02,278   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:02,278    1316 |  if(size3>xfp->buf1size)
2024-07-11T14:21:02,279         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T14:21:02,280   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:02,280    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T14:21:02,280         |                   ^
2024-07-11T14:21:02,283   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-11T14:21:02,283    1289 |  int smallidx,  maxidx, minidx;
2024-07-11T14:21:02,283         |                         ^~~~~~
2024-07-11T14:21:02,283   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-11T14:21:02,284    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-11T14:21:02,284         |                         ^~~~~~
2024-07-11T14:21:02,284   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-11T14:21:02,284    1297 |  int errval=1;
2024-07-11T14:21:02,284         |      ^~~~~~
2024-07-11T14:21:02,285   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-07-11T14:21:02,285   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:02,285    1513 |  if(size3>xfp->buf1size) {
2024-07-11T14:21:02,286         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T14:21:02,289   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,290    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-07-11T14:21:02,290         |                  ^
2024-07-11T14:21:02,290   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:02,290    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T14:21:02,290         |                   ^
2024-07-11T14:21:02,294   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:02,294    1743 |  if(tmp==(unsigned int)buf2[0])
2024-07-11T14:21:02,294         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:21:02,294   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-11T14:21:02,294    1504 |  int errval=1;
2024-07-11T14:21:02,294         |      ^~~~~~
2024-07-11T14:21:04,521   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-07-11T14:21:04,774   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-07-11T14:21:05,389   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-07-11T14:21:05,390   moleculekit/fileformats/xtc/src/xtc.cpp:234:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T14:21:05,390     234 |   for (aidx = 0; aidx < natoms; aidx++)
2024-07-11T14:21:05,390         |                  ~~~~~^~~~~~~~
2024-07-11T14:21:05,396   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-07-11T14:21:05,396   moleculekit/fileformats/xtc/src/xtc.cpp:436:16: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T14:21:05,396     436 |  for (f = 0; f < nframes; f++)
2024-07-11T14:21:05,397         |              ~~^~~~~~~~~
2024-07-11T14:21:05,397   moleculekit/fileformats/xtc/src/xtc.cpp:451:17: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T14:21:05,397     451 |   for (i = 0; i < natoms; i++)
2024-07-11T14:21:05,397         |               ~~^~~~~~~~
2024-07-11T14:21:05,399   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-07-11T14:21:05,400   moleculekit/fileformats/xtc/src/xtc.cpp:541:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T14:21:05,400     541 |    for (aidx = 0; aidx < natoms; aidx++)
2024-07-11T14:21:05,400         |                   ~~~~~^~~~~~~~
2024-07-11T14:21:05,402   moleculekit/fileformats/xtc/src/xtc.cpp:610:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T14:21:05,402     610 |    for (aidx = 0; aidx < natoms; aidx++)
2024-07-11T14:21:05,402         |                   ~~~~~^~~~~~~~
2024-07-11T14:21:06,183   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-07-11T14:21:06,427   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:21:06,427                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:21:06,427                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:21:06,427                    from moleculekit/fileformats/xtc/xtc.cpp:1269:
2024-07-11T14:21:06,427   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:21:06,428      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:21:06,428         |  ^~~~~~~
2024-07-11T14:21:06,862   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T14:21:06,862                    from moleculekit/fileformats/xtc/xtc.cpp:1273:
2024-07-11T14:21:06,862   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T14:21:06,862   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T14:21:06,863     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T14:21:06,863         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T14:21:26,491   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:21:26,799   building 'moleculekit.trr' extension
2024-07-11T14:21:26,800   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-07-11T14:21:26,924   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-07-11T14:21:27,185   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,186      66 |  "OK",
2024-07-11T14:21:27,186         |  ^~~~
2024-07-11T14:21:27,186   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,186      67 |  "Header",
2024-07-11T14:21:27,186         |  ^~~~~~~~
2024-07-11T14:21:27,186   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,187      68 |  "String",
2024-07-11T14:21:27,187         |  ^~~~~~~~
2024-07-11T14:21:27,187   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,187      69 |  "Double",
2024-07-11T14:21:27,187         |  ^~~~~~~~
2024-07-11T14:21:27,187   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,187      70 |  "Integer",
2024-07-11T14:21:27,188         |  ^~~~~~~~~
2024-07-11T14:21:27,188   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,188      71 |  "Float",
2024-07-11T14:21:27,188         |  ^~~~~~~
2024-07-11T14:21:27,188   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,188      72 |  "Unsigned integer",
2024-07-11T14:21:27,188         |  ^~~~~~~~~~~~~~~~~~
2024-07-11T14:21:27,188   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,189      73 |  "Compressed 3D coordinate",
2024-07-11T14:21:27,189         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:21:27,189   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,189      74 |  "Closing file",
2024-07-11T14:21:27,189         |  ^~~~~~~~~~~~~~
2024-07-11T14:21:27,189   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,189      75 |  "Magic number",
2024-07-11T14:21:27,190         |  ^~~~~~~~~~~~~~
2024-07-11T14:21:27,190   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,190      76 |  "Not enough memory",
2024-07-11T14:21:27,190         |  ^~~~~~~~~~~~~~~~~~~
2024-07-11T14:21:27,190   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,190      77 |  "End of file",
2024-07-11T14:21:27,190         |  ^~~~~~~~~~~~~
2024-07-11T14:21:27,191   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T14:21:27,191      78 |  "File not found"
2024-07-11T14:21:27,191         |  ^~~~~~~~~~~~~~~~
2024-07-11T14:21:27,195   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-07-11T14:21:27,195   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,195     459 |     while (size >= num && num_of_bits < 32)
2024-07-11T14:21:27,195         |            ~~~~~^~~~~~
2024-07-11T14:21:27,195   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-07-11T14:21:27,196   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:27,196     505 |     while (bytes[num_of_bytes] >= num)
2024-07-11T14:21:27,196         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-11T14:21:27,198   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-07-11T14:21:27,198   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,198     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-07-11T14:21:27,198         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-07-11T14:21:27,199   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,199     616 |   for (i = 0; i < num_of_bytes; i++)
2024-07-11T14:21:27,199         |               ~~^~~~~~~~~~~~~~
2024-07-11T14:21:27,199   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,199     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-07-11T14:21:27,199         |               ~~^~~~~~~~~~~~~~~~
2024-07-11T14:21:27,199   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-07-11T14:21:27,200   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:27,200     664 |   if (lastbits < num_of_bits)
2024-07-11T14:21:27,200         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-07-11T14:21:27,203   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-07-11T14:21:27,203   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:27,203     785 |  if(size3>xfp->buf1size)
2024-07-11T14:21:27,204         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T14:21:27,205   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:27,205     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T14:21:27,205         |                   ^
2024-07-11T14:21:27,208   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,208     932 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T14:21:27,208         |        ~~~~~~~~~^~~~~~~~
2024-07-11T14:21:27,208   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,208     935 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T14:21:27,209         |        ~~~~~~~~~^~~~~~~~
2024-07-11T14:21:27,209   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,209     938 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T14:21:27,209         |        ~~~~~~~~~^~~~~~~~
2024-07-11T14:21:27,209   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,209     945 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T14:21:27,209         |        ~~~~~~~~~^~~~~~~~
2024-07-11T14:21:27,210   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,210     948 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T14:21:27,210         |        ~~~~~~~~~^~~~~~~~
2024-07-11T14:21:27,210   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,210     951 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T14:21:27,210         |        ~~~~~~~~~^~~~~~~~
2024-07-11T14:21:27,210   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-11T14:21:27,210     756 |  int smallidx,  minidx, maxidx;
2024-07-11T14:21:27,211         |                 ^~~~~~
2024-07-11T14:21:27,211   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-11T14:21:27,211     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-11T14:21:27,211         |                         ^~~~~~
2024-07-11T14:21:27,211   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-11T14:21:27,211     763 |  int errval=1;
2024-07-11T14:21:27,211         |      ^~~~~~
2024-07-11T14:21:27,212   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-07-11T14:21:27,212   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:27,212    1011 |  if(size3>xfp->buf1size)
2024-07-11T14:21:27,212         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T14:21:27,214   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,214    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T14:21:27,214         |                     ~~~~~~~~^~~~~~~
2024-07-11T14:21:27,215   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,215    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T14:21:27,215         |                    ~~~~~~~~^~~~~~~
2024-07-11T14:21:27,215   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,216    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T14:21:27,216         |                    ~~~~~~~~^~~~~~~
2024-07-11T14:21:27,217   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,217    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-07-11T14:21:27,217         |                  ^
2024-07-11T14:21:27,218   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:27,218    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T14:21:27,218         |                   ^
2024-07-11T14:21:27,221   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,221    1275 |  if(tmp==(unsigned int)buf2[0])
2024-07-11T14:21:27,222         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:21:27,222   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-11T14:21:27,222    1001 |  int errval;
2024-07-11T14:21:27,222         |      ^~~~~~
2024-07-11T14:21:27,224   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-07-11T14:21:27,225   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:27,225    1316 |  if(size3>xfp->buf1size)
2024-07-11T14:21:27,225         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T14:21:27,226   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:27,227    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T14:21:27,227         |                   ^
2024-07-11T14:21:27,229   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-11T14:21:27,230    1289 |  int smallidx,  maxidx, minidx;
2024-07-11T14:21:27,230         |                         ^~~~~~
2024-07-11T14:21:27,230   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-11T14:21:27,230    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-11T14:21:27,230         |                         ^~~~~~
2024-07-11T14:21:27,230   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-11T14:21:27,230    1297 |  int errval=1;
2024-07-11T14:21:27,230         |      ^~~~~~
2024-07-11T14:21:27,231   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-07-11T14:21:27,232   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:27,232    1513 |  if(size3>xfp->buf1size) {
2024-07-11T14:21:27,232         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T14:21:27,236   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,236    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-07-11T14:21:27,236         |                  ^
2024-07-11T14:21:27,236   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:21:27,237    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T14:21:27,237         |                   ^
2024-07-11T14:21:27,240   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:21:27,240    1743 |  if(tmp==(unsigned int)buf2[0])
2024-07-11T14:21:27,241         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:21:27,241   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-11T14:21:27,241    1504 |  int errval=1;
2024-07-11T14:21:27,241         |      ^~~~~~
2024-07-11T14:21:29,464   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-07-11T14:21:29,562   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-07-11T14:21:29,562   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-07-11T14:21:29,562     111 |         if (slen != strlen(version)+1)
2024-07-11T14:21:29,562         |                  ^~
2024-07-11T14:21:29,562   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-07-11T14:21:29,563     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-07-11T14:21:29,563         |                                              ^~
2024-07-11T14:21:30,129   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-07-11T14:21:30,463   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:21:30,464                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:21:30,464                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:21:30,464                    from moleculekit/fileformats/xtc/trr.c:1261:
2024-07-11T14:21:30,464   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:21:30,464      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:21:30,464         |  ^~~~~~~
2024-07-11T14:21:31,077   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-07-11T14:21:31,085   moleculekit/fileformats/xtc/trr.c:16804:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-07-11T14:21:31,086   16804 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-07-11T14:21:31,086         |                                     ^~
2024-07-11T14:21:51,434   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-07-11T14:21:51,434   moleculekit/fileformats/xtc/trr.c:1163:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:21:51,434    1163 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-11T14:21:51,435         |                                        ^~~~~~~~~~~~~~~
2024-07-11T14:21:51,443   moleculekit/fileformats/xtc/trr.c:14714:7: note: ‘__pyx_v_status’ was declared here
2024-07-11T14:21:51,443   14714 |   int __pyx_v_status;
2024-07-11T14:21:51,443         |       ^~~~~~~~~~~~~~
2024-07-11T14:22:01,816   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-07-11T14:22:01,823   moleculekit/fileformats/xtc/trr.c:12013:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,823   12013 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-07-11T14:22:01,823         |                   ^
2024-07-11T14:22:01,830   moleculekit/fileformats/xtc/trr.c:12009:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,830   12009 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T14:22:01,831         |                   ^
2024-07-11T14:22:01,831   moleculekit/fileformats/xtc/trr.c:2485:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,831    2485 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-07-11T14:22:01,832         |                                                                                               ^
2024-07-11T14:22:01,837   moleculekit/fileformats/xtc/trr.c:10545:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-07-11T14:22:01,838   10545 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-07-11T14:22:01,838         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T14:22:01,844   moleculekit/fileformats/xtc/trr.c:12003:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,844   12003 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-07-11T14:22:01,844         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-11T14:22:01,851   moleculekit/fileformats/xtc/trr.c:11956:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,852   11956 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-07-11T14:22:01,852         |                   ^
2024-07-11T14:22:01,860   moleculekit/fileformats/xtc/trr.c:11952:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,860   11952 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T14:22:01,860         |                   ^
2024-07-11T14:22:01,861   moleculekit/fileformats/xtc/trr.c:2485:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,861    2485 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-07-11T14:22:01,861         |                                                                                               ^
2024-07-11T14:22:01,867   moleculekit/fileformats/xtc/trr.c:10561:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-07-11T14:22:01,867   10561 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-07-11T14:22:01,867         |                     ^~~~~~~~~~~~~~~~~~~~
2024-07-11T14:22:01,873   moleculekit/fileformats/xtc/trr.c:11946:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,873   11946 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-07-11T14:22:01,873         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-11T14:22:01,880   moleculekit/fileformats/xtc/trr.c:12345:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,880   12345 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T14:22:01,880         |                 ^
2024-07-11T14:22:01,887   moleculekit/fileformats/xtc/trr.c:12341:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,888   12341 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-11T14:22:01,888         |                 ^
2024-07-11T14:22:01,895   moleculekit/fileformats/xtc/trr.c:12186:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,896   12186 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T14:22:01,896         |                   ^
2024-07-11T14:22:01,903   moleculekit/fileformats/xtc/trr.c:12182:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,904   12182 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-11T14:22:01,904         |                   ^
2024-07-11T14:22:01,910   moleculekit/fileformats/xtc/trr.c:12238:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,910   12238 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T14:22:01,910         |                   ^
2024-07-11T14:22:01,917   moleculekit/fileformats/xtc/trr.c:12234:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:01,918   12234 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-11T14:22:01,918         |                   ^
2024-07-11T14:22:08,406   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:22:08,593   building 'moleculekit.dcd' extension
2024-07-11T14:22:08,594   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T14:22:08,595   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-11T14:22:08,596   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-07-11T14:22:08,950   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:22:08,950                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:22:08,950                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:22:08,950                    from moleculekit/fileformats/dcd/dcd.c:1256:
2024-07-11T14:22:08,951   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:22:08,951      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:22:08,951         |  ^~~~~~~
2024-07-11T14:22:09,974   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-07-11T14:22:09,974                    from moleculekit/fileformats/dcd/dcd.c:1262:
2024-07-11T14:22:09,974   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-07-11T14:22:09,975     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-07-11T14:22:09,975         |            ^~~~~~~~~~~~~
2024-07-11T14:22:09,975   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-07-11T14:22:09,975     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-07-11T14:22:09,975         |            ^~~~~~~~~~~~~~
2024-07-11T14:22:09,975   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-07-11T14:22:09,975     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-07-11T14:22:09,976         |            ^~~~~~~~~~~~~~~
2024-07-11T14:22:09,976   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-07-11T14:22:09,976     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-07-11T14:22:09,976         |                   ^~~~~~~~~
2024-07-11T14:22:09,976   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-07-11T14:22:09,976     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-07-11T14:22:09,976         |                   ^~~~~~~~~
2024-07-11T14:22:09,977   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-07-11T14:22:09,977     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-07-11T14:22:09,977         |                   ^~~~~~~~~
2024-07-11T14:22:09,977   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-07-11T14:22:09,977     394 | static int fio_fclose(fio_fd fd) {
2024-07-11T14:22:09,977         |            ^~~~~~~~~~
2024-07-11T14:22:09,977   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-07-11T14:22:09,977     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-07-11T14:22:09,978         |            ^~~~~~~~
2024-07-11T14:22:22,649   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-07-11T14:22:22,649   moleculekit/fileformats/dcd/dcd.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:22,649    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-11T14:22:22,649         |                                        ^~~~~~~~~~~~~~~
2024-07-11T14:22:22,654   moleculekit/fileformats/dcd/dcd.c:8476:7: note: ‘__pyx_v_i’ was declared here
2024-07-11T14:22:22,654    8476 |   int __pyx_v_i;
2024-07-11T14:22:22,654         |       ^~~~~~~~~
2024-07-11T14:22:25,910   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-07-11T14:22:26,126   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-07-11T14:22:26,126   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:22:26,127     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-07-11T14:22:26,127         |                                                       ^~
2024-07-11T14:22:26,127   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:22:26,127     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-07-11T14:22:26,127         |                                                      ^~
2024-07-11T14:22:26,127   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:22:26,128     194 |     if (input_integer[0] != dcdcordmagic)
2024-07-11T14:22:26,128         |                          ^~
2024-07-11T14:22:26,131   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:22:26,131     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-07-11T14:22:26,131         |                                               ^~
2024-07-11T14:22:26,131   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T14:22:26,131     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-07-11T14:22:26,131         |                                               ^~
2024-07-11T14:22:26,135   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-07-11T14:22:26,135   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:22:26,135     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-07-11T14:22:26,135         |                       ^~
2024-07-11T14:22:26,136   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T14:22:26,136     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-07-11T14:22:26,136         |                                                 ^~
2024-07-11T14:22:26,158   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-07-11T14:22:26,159   At top level:
2024-07-11T14:22:26,159   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-07-11T14:22:26,159      96 | static void swap2_aligned(void *v, long ndata) {
2024-07-11T14:22:26,159         |             ^~~~~~~~~~~~~
2024-07-11T14:22:26,159   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-07-11T14:22:26,159      32 | static void swap2_unaligned(void *v, long ndata) {
2024-07-11T14:22:26,160         |             ^~~~~~~~~~~~~~~
2024-07-11T14:22:26,160   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-07-11T14:22:26,160   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-07-11T14:22:26,160     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-07-11T14:22:26,160         |            ^~~~~~~~~~~~~
2024-07-11T14:22:26,160   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-07-11T14:22:26,160     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-07-11T14:22:26,161         |            ^~~~~~~~~~~~~~
2024-07-11T14:22:27,260   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:22:27,403   building 'moleculekit.binpos' extension
2024-07-11T14:22:27,404   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T14:22:27,405   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-11T14:22:27,406   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-07-11T14:22:27,747   In file included from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T14:22:27,748                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T14:22:27,748                    from /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T14:22:27,748                    from moleculekit/fileformats/binpos/binpos.c:1256:
2024-07-11T14:22:27,748   /tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T14:22:27,748      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T14:22:27,748         |  ^~~~~~~
2024-07-11T14:22:41,239   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-07-11T14:22:41,244   moleculekit/fileformats/binpos/binpos.c:8499:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:41,244    8499 |   if (__pyx_t_1) {
2024-07-11T14:22:41,244         |      ^
2024-07-11T14:22:41,248   moleculekit/fileformats/binpos/binpos.c:7976:7: note: ‘__pyx_v_status’ was declared here
2024-07-11T14:22:41,248    7976 |   int __pyx_v_status;
2024-07-11T14:22:41,248         |       ^~~~~~~~~~~~~~
2024-07-11T14:22:41,249   moleculekit/fileformats/binpos/binpos.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T14:22:41,249    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-11T14:22:41,249         |                                        ^~~~~~~~~~~~~~~
2024-07-11T14:22:41,253   moleculekit/fileformats/binpos/binpos.c:7973:7: note: ‘__pyx_v_i’ was declared here
2024-07-11T14:22:41,253    7973 |   int __pyx_v_i;
2024-07-11T14:22:41,254         |       ^~~~~~~~~
2024-07-11T14:22:43,471   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-07-11T14:22:43,771   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:22:43,910   building 'moleculekit.tmalign' extension
2024-07-11T14:22:43,911   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T14:22:43,912   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-11T14:22:43,913   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-07-11T14:23:13,406   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-k7hm872d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-07-11T14:23:31,869   In file included from /usr/include/c++/10/vector:72,
2024-07-11T14:23:31,870                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-07-11T14:23:31,870   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-07-11T14:23:31,870   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-07-11T14:23:31,870     426 |       vector<_Tp, _Alloc>::
2024-07-11T14:23:31,870         |       ^~~~~~~~~~~~~~~~~~~
2024-07-11T14:23:32,451   In file included from /usr/include/c++/10/vector:67,
2024-07-11T14:23:32,451                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-07-11T14:23:32,451   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-07-11T14:23:32,451   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-11T14:23:32,452    1198 |    _M_realloc_insert(end(), __x);
2024-07-11T14:23:32,452         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T14:23:32,452   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-11T14:23:32,452    1198 |    _M_realloc_insert(end(), __x);
2024-07-11T14:23:32,452         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T14:23:32,453   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-11T14:23:32,453    1198 |    _M_realloc_insert(end(), __x);
2024-07-11T14:23:32,453         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T14:23:34,890   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-07-11T14:23:35,335   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-07-11T14:23:35,336   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.9.1'
2024-07-11T14:23:35,336   installing to build/bdist.linux-armv7l/wheel
2024-07-11T14:23:35,336   running install
2024-07-11T14:23:35,363   running install_lib
2024-07-11T14:23:35,370   creating build/bdist.linux-armv7l
2024-07-11T14:23:35,371   creating build/bdist.linux-armv7l/wheel
2024-07-11T14:23:35,374   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,376   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,384   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-11T14:23:35,385   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-11T14:23:35,387   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-07-11T14:23:35,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-07-11T14:23:35,391   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-11T14:23:35,395   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-11T14:23:35,396   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-11T14:23:35,400   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-11T14:23:35,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-11T14:23:35,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-11T14:23:35,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-11T14:23:35,426   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-11T14:23:35,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-11T14:23:35,432   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-11T14:23:35,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-11T14:23:35,436   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-07-11T14:23:35,438   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-07-11T14:23:35,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-11T14:23:35,461   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T14:23:35,462   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T14:23:35,465   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T14:23:35,468   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T14:23:35,471   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T14:23:35,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T14:23:35,476   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-11T14:23:35,479   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-11T14:23:35,482   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T14:23:35,483   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T14:23:35,504   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T14:23:35,506   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T14:23:35,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T14:23:35,529   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T14:23:35,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T14:23:35,534   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T14:23:35,535   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T14:23:35,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T14:23:35,541   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T14:23:35,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T14:23:35,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T14:23:35,548   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T14:23:35,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T14:23:35,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T14:23:35,552   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T14:23:35,554   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T14:23:35,556   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T14:23:35,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T14:23:35,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T14:23:35,562   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-11T14:23:35,563   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-11T14:23:35,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-11T14:23:35,584   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,653   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-11T14:23:35,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-11T14:23:35,657   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-11T14:23:35,686   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,691   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,692   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,694   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,696   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,701   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,710   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,712   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,716   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,721   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,723   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T14:23:35,726   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-11T14:23:35,727   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-11T14:23:35,730   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-11T14:23:35,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:35,766   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T14:23:35,767   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T14:23:35,769   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmolcdp.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T14:23:35,771   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T14:23:35,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T14:23:35,777   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T14:23:35,779   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T14:23:35,781   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T14:23:35,784   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T14:23:35,785   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T14:23:35,787   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T14:23:35,789   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T14:23:35,791   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T14:23:35,794   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-07-11T14:23:35,795   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T14:23:35,796   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T14:23:35,799   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T14:23:35,801   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T14:23:35,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/BinaryCifReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T14:23:35,806   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T14:23:35,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-07-11T14:23:35,811   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-11T14:23:35,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-11T14:23:35,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-11T14:23:35,816   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T14:23:35,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T14:23:35,819   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T14:23:35,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T14:23:35,824   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T14:23:35,826   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-11T14:23:35,827   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-07-11T14:23:35,831   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,832   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,834   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,836   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,838   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,843   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,849   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,857   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,867   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,869   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,874   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,878   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,879   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,883   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,893   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,895   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,898   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,900   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,907   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,909   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,916   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,921   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,923   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,928   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,932   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,939   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,951   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,953   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,955   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,957   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,958   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,966   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,968   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,972   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,976   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,978   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,983   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,989   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,992   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,996   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:35,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,003   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,005   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,007   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,009   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,011   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,013   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,015   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,016   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,020   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,029   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,042   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,044   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,046   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,052   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,062   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,064   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,075   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,088   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,090   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,094   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,101   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,113   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,114   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,116   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,118   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,126   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,140   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,145   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,155   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T14:23:36,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-11T14:23:36,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-11T14:23:36,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-11T14:23:36,360   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-07-11T14:23:36,361   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-07-11T14:23:36,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,367   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,369   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,375   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-11T14:23:36,376   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-11T14:23:36,378   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-11T14:23:36,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-11T14:23:36,421   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-07-11T14:23:36,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-07-11T14:23:36,430   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-07-11T14:23:36,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-07-11T14:23:36,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,440   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,446   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,505   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-11T14:23:36,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-11T14:23:36,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-11T14:23:36,511   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-11T14:23:36,513   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,515   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,541   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-11T14:23:36,542   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-11T14:23:36,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-11T14:23:36,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,572   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,575   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T14:23:36,576   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-11T14:23:36,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-11T14:23:36,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-11T14:23:36,601   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T14:23:36,624   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-11T14:23:36,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-11T14:23:36,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-11T14:23:36,648   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-11T14:23:36,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-11T14:23:36,670   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-11T14:23:36,673   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T14:23:36,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T14:23:36,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T14:23:36,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T14:23:36,727   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T14:23:36,751   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-11T14:23:36,752   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-11T14:23:36,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-11T14:23:36,777   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,797   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,822   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-11T14:23:36,823   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-11T14:23:36,825   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-11T14:23:36,844   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,846   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,868   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-11T14:23:36,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-11T14:23:36,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-11T14:23:36,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,921   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T14:23:36,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T14:23:36,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T14:23:36,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T14:23:36,929   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T14:23:36,931   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T14:23:36,954   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,955   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,958   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,963   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,965   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,973   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,977   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-11T14:23:36,978   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-11T14:23:36,980   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-11T14:23:36,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,989   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,992   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T14:23:36,994   running install_egg_info
2024-07-11T14:23:36,999   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.9.1-py3.9.egg-info
2024-07-11T14:23:37,013   running install_scripts
2024-07-11T14:23:37,060   creating build/bdist.linux-armv7l/wheel/moleculekit-1.9.1.dist-info/WHEEL
2024-07-11T14:23:37,063   creating '/tmp/pip-wheel-wxh707jd/.tmp-rxgh1lg2/moleculekit-1.9.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-07-11T14:23:37,066   adding 'moleculekit/__init__.py'
2024-07-11T14:23:37,068   adding 'moleculekit/_version.py'
2024-07-11T14:23:37,070   adding 'moleculekit/align.py'
2024-07-11T14:23:37,412   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:37,573   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:37,579   adding 'moleculekit/bondguesser.py'
2024-07-11T14:23:37,821   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:37,830   adding 'moleculekit/config.py'
2024-07-11T14:23:38,086   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:38,257   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:38,263   adding 'moleculekit/dihedral.py'
2024-07-11T14:23:38,264   adding 'moleculekit/distance.py'
2024-07-11T14:23:38,592   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:38,604   adding 'moleculekit/home.py'
2024-07-11T14:23:38,605   adding 'moleculekit/logging.ini'
2024-07-11T14:23:38,619   adding 'moleculekit/molecule.py'
2024-07-11T14:23:38,845   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:38,854   adding 'moleculekit/opm.py'
2024-07-11T14:23:38,856   adding 'moleculekit/periodictable.py'
2024-07-11T14:23:38,858   adding 'moleculekit/pymolgraphics.py'
2024-07-11T14:23:38,859   adding 'moleculekit/rcsb.py'
2024-07-11T14:23:38,860   adding 'moleculekit/rdkitintegration.py'
2024-07-11T14:23:38,875   adding 'moleculekit/readers.py'
2024-07-11T14:23:39,476   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:39,786   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:39,798   adding 'moleculekit/util.py'
2024-07-11T14:23:39,800   adding 'moleculekit/version.py'
2024-07-11T14:23:39,801   adding 'moleculekit/viewer.py'
2024-07-11T14:23:39,803   adding 'moleculekit/vmd_wrapper'
2024-07-11T14:23:39,804   adding 'moleculekit/vmdgraphics.py'
2024-07-11T14:23:39,807   adding 'moleculekit/vmdviewer.py'
2024-07-11T14:23:40,058   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:40,072   adding 'moleculekit/writers.py'
2024-07-11T14:23:40,339   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:40,349   adding 'moleculekit/atomselect/__init__.py'
2024-07-11T14:23:40,352   adding 'moleculekit/atomselect/analyze.py'
2024-07-11T14:23:40,354   adding 'moleculekit/atomselect/atomselect.py'
2024-07-11T14:23:40,356   adding 'moleculekit/atomselect/languageparser.py'
2024-07-11T14:23:40,461   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-07-11T14:23:40,472   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-07-11T14:23:40,565   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-07-11T14:23:40,574   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-07-11T14:23:40,665   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-07-11T14:23:40,673   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-07-11T14:23:40,778   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-07-11T14:23:40,789   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-07-11T14:23:40,790   adding 'moleculekit/fileformats/__init__.py'
2024-07-11T14:23:40,796   adding 'moleculekit/fileformats/netcdf.py'
2024-07-11T14:23:40,804   adding 'moleculekit/fileformats/utils.py'
2024-07-11T14:23:40,867   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-07-11T14:23:40,874   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-07-11T14:23:40,875   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-07-11T14:23:40,877   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-07-11T14:23:40,879   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-07-11T14:23:40,884   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-07-11T14:23:40,886   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-07-11T14:23:40,950   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-07-11T14:23:40,958   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-07-11T14:23:40,960   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-07-11T14:23:40,962   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-07-11T14:23:40,963   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-07-11T14:23:40,965   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-07-11T14:23:40,966   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-07-11T14:23:40,971   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-07-11T14:23:40,977   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-07-11T14:23:41,073   adding 'moleculekit/fileformats/xtc/trr.c'
2024-07-11T14:23:41,085   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-07-11T14:23:41,086   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-07-11T14:23:41,088   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-07-11T14:23:41,178   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-07-11T14:23:41,187   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-07-11T14:23:41,188   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-07-11T14:23:41,190   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-07-11T14:23:41,191   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-07-11T14:23:41,194   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-07-11T14:23:41,195   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-07-11T14:23:41,197   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-07-11T14:23:41,198   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-07-11T14:23:41,200   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-07-11T14:23:41,206   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-07-11T14:23:41,209   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-07-11T14:23:41,210   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-07-11T14:23:41,212   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-07-11T14:23:41,214   adding 'moleculekit/interactions/__init__.py'
2024-07-11T14:23:41,498   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:41,765   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:41,777   adding 'moleculekit/interactions/interactions.py'
2024-07-11T14:23:42,059   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:42,347   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T14:23:42,450   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-07-11T14:23:42,459   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-07-11T14:23:42,552   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-07-11T14:23:42,561   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-07-11T14:23:42,655   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-07-11T14:23:42,664   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-07-11T14:23:42,757   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-07-11T14:23:42,766   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-07-11T14:23:42,855   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-07-11T14:23:42,863   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-07-11T14:23:42,865   adding 'moleculekit/pdbx/__init__.py'
2024-07-11T14:23:42,868   adding 'moleculekit/pdbx/reader/BinaryCifReader.py'
2024-07-11T14:23:42,871   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-07-11T14:23:42,874   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-07-11T14:23:42,877   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-07-11T14:23:42,878   adding 'moleculekit/pdbx/reader/__init__.py'
2024-07-11T14:23:42,880   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-07-11T14:23:42,882   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-07-11T14:23:42,883   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-07-11T14:23:42,884   adding 'moleculekit/pdbx/tests/__init__.py'
2024-07-11T14:23:42,886   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-07-11T14:23:42,888   adding 'moleculekit/pdbx/writer/__init__.py'
2024-07-11T14:23:42,889   adding 'moleculekit/ply/__init__.py'
2024-07-11T14:23:42,894   adding 'moleculekit/ply/lex.py'
2024-07-11T14:23:42,905   adding 'moleculekit/ply/yacc.py'
2024-07-11T14:23:42,908   adding 'moleculekit/projections/__init__.py'
2024-07-11T14:23:42,910   adding 'moleculekit/projections/metriccoordinate.py'
2024-07-11T14:23:42,913   adding 'moleculekit/projections/metricdihedral.py'
2024-07-11T14:23:42,917   adding 'moleculekit/projections/metricdistance.py'
2024-07-11T14:23:42,919   adding 'moleculekit/projections/metricfluctuation.py'
2024-07-11T14:23:42,921   adding 'moleculekit/projections/metricgyration.py'
2024-07-11T14:23:42,925   adding 'moleculekit/projections/metricplumed2.py'
2024-07-11T14:23:42,927   adding 'moleculekit/projections/metricrmsd.py'
2024-07-11T14:23:42,929   adding 'moleculekit/projections/metricsasa.py'
2024-07-11T14:23:42,931   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-07-11T14:23:42,933   adding 'moleculekit/projections/metricshell.py'
2024-07-11T14:23:42,935   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-07-11T14:23:42,936   adding 'moleculekit/projections/metrictmscore.py'
2024-07-11T14:23:42,937   adding 'moleculekit/projections/projection.py'
2024-07-11T14:23:42,939   adding 'moleculekit/projections/util.py'
2024-07-11T14:23:42,941   adding 'moleculekit/share/ALA.cif'
2024-07-11T14:23:42,943   adding 'moleculekit/share/backbone.cif'
2024-07-11T14:23:44,250   adding 'moleculekit/share/opm_sequences.json'
2024-07-11T14:23:44,335   adding 'moleculekit/share/atomselect/atomselect.json'
2024-07-11T14:23:44,341   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-07-11T14:23:44,342   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-07-11T14:23:44,343   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-07-11T14:23:44,344   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-07-11T14:23:44,346   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-07-11T14:23:44,347   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-07-11T14:23:44,348   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-07-11T14:23:44,349   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-07-11T14:23:44,351   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-07-11T14:23:44,352   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-07-11T14:23:44,353   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-07-11T14:23:44,354   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-07-11T14:23:44,356   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-07-11T14:23:44,357   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-07-11T14:23:44,358   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-07-11T14:23:44,359   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-07-11T14:23:44,361   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-07-11T14:23:44,362   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-07-11T14:23:44,363   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-07-11T14:23:44,364   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-07-11T14:23:44,366   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-07-11T14:23:44,367   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-07-11T14:23:44,368   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-07-11T14:23:44,369   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-07-11T14:23:44,371   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-07-11T14:23:44,372   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-07-11T14:23:44,373   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-07-11T14:23:44,374   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-07-11T14:23:44,376   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-07-11T14:23:44,377   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-07-11T14:23:44,378   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-07-11T14:23:44,379   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-07-11T14:23:44,380   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-07-11T14:23:44,382   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-07-11T14:23:44,383   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-07-11T14:23:44,384   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-07-11T14:23:44,386   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-07-11T14:23:44,387   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-07-11T14:23:44,388   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-07-11T14:23:44,389   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-07-11T14:23:44,391   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-07-11T14:23:44,392   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-07-11T14:23:44,393   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-07-11T14:23:44,394   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-07-11T14:23:44,396   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-07-11T14:23:44,397   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-07-11T14:23:44,398   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-07-11T14:23:44,399   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-07-11T14:23:44,401   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-07-11T14:23:44,402   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-07-11T14:23:44,403   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-07-11T14:23:44,405   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-07-11T14:23:44,406   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-07-11T14:23:44,407   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-07-11T14:23:44,409   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-07-11T14:23:44,410   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-07-11T14:23:44,411   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-07-11T14:23:44,413   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-07-11T14:23:44,414   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-07-11T14:23:44,415   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-07-11T14:23:44,416   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-07-11T14:23:44,418   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-07-11T14:23:44,419   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-07-11T14:23:44,420   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-07-11T14:23:44,422   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-07-11T14:23:44,423   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-07-11T14:23:44,424   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-07-11T14:23:44,425   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-07-11T14:23:44,427   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-07-11T14:23:44,428   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-07-11T14:23:44,429   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-07-11T14:23:44,431   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-07-11T14:23:44,432   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-07-11T14:23:44,433   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-07-11T14:23:44,434   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-07-11T14:23:44,436   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-07-11T14:23:44,437   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-07-11T14:23:44,438   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-07-11T14:23:44,439   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-07-11T14:23:44,441   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-07-11T14:23:44,442   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-07-11T14:23:44,443   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-07-11T14:23:44,445   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-07-11T14:23:44,446   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-07-11T14:23:44,448   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-07-11T14:23:44,449   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-07-11T14:23:44,450   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-07-11T14:23:44,451   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-07-11T14:23:44,453   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-07-11T14:23:44,454   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-07-11T14:23:44,455   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-07-11T14:23:44,457   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-07-11T14:23:44,458   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-07-11T14:23:44,459   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-07-11T14:23:44,460   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-07-11T14:23:44,462   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-07-11T14:23:44,463   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-07-11T14:23:44,464   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-07-11T14:23:44,465   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-07-11T14:23:44,467   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-07-11T14:23:44,468   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-07-11T14:23:44,469   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-07-11T14:23:44,471   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-07-11T14:23:44,472   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-07-11T14:23:44,473   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-07-11T14:23:44,475   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-07-11T14:23:44,476   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-07-11T14:23:44,477   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-07-11T14:23:44,479   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-07-11T14:23:44,480   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-07-11T14:23:44,481   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-07-11T14:23:44,482   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-07-11T14:23:44,484   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-07-11T14:23:44,485   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-07-11T14:23:44,486   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-07-11T14:23:44,487   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-07-11T14:23:44,489   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-07-11T14:23:44,490   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-07-11T14:23:44,491   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-07-11T14:23:44,493   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-07-11T14:23:44,494   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-07-11T14:23:44,495   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-07-11T14:23:44,496   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-07-11T14:23:44,498   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-07-11T14:23:44,499   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-07-11T14:23:44,500   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-07-11T14:23:44,502   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-07-11T14:23:44,503   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-07-11T14:23:44,504   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-07-11T14:23:44,505   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-07-11T14:23:44,507   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-07-11T14:23:44,508   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-07-11T14:23:44,509   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-07-11T14:23:44,511   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-07-11T14:23:44,512   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-07-11T14:23:44,513   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-07-11T14:23:44,514   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-07-11T14:23:44,516   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-07-11T14:23:44,517   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-07-11T14:23:44,518   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-07-11T14:23:44,519   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-07-11T14:23:44,521   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-07-11T14:23:44,522   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-07-11T14:23:44,523   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-07-11T14:23:44,524   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-07-11T14:23:44,526   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-07-11T14:23:44,527   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-07-11T14:23:44,528   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-07-11T14:23:44,530   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-07-11T14:23:44,531   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-07-11T14:23:44,532   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-07-11T14:23:44,533   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-07-11T14:23:44,534   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-07-11T14:23:44,536   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-07-11T14:23:44,537   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-07-11T14:23:44,539   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-07-11T14:23:44,540   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-07-11T14:23:44,541   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-07-11T14:23:44,542   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-07-11T14:23:44,544   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-07-11T14:23:44,545   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-07-11T14:23:44,546   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-07-11T14:23:44,548   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-07-11T14:23:44,549   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-07-11T14:23:44,550   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-07-11T14:23:44,551   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-07-11T14:23:44,553   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-07-11T14:23:44,554   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-07-11T14:23:44,556   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-07-11T14:23:44,557   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-07-11T14:23:44,558   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-07-11T14:23:44,559   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-07-11T14:23:44,561   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-07-11T14:23:44,562   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-07-11T14:23:44,563   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-07-11T14:23:44,565   adding 'moleculekit/smallmol/__init__.py'
2024-07-11T14:23:44,570   adding 'moleculekit/smallmol/smallmol.py'
2024-07-11T14:23:44,572   adding 'moleculekit/smallmol/smallmolcdp.py'
2024-07-11T14:23:44,575   adding 'moleculekit/smallmol/smallmollib.py'
2024-07-11T14:23:44,577   adding 'moleculekit/smallmol/test_smallmol.py'
2024-07-11T14:23:44,578   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-07-11T14:23:44,580   adding 'moleculekit/smallmol/util.py'
2024-07-11T14:23:44,582   adding 'moleculekit/smallmol/tools/__init__.py'
2024-07-11T14:23:44,584   adding 'moleculekit/smallmol/tools/clustering.py'
2024-07-11T14:23:44,585   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-07-11T14:23:44,587   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-07-11T14:23:44,678   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-07-11T14:23:44,687   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-07-11T14:23:44,688   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-07-11T14:23:44,690   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-07-11T14:23:44,708   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-07-11T14:23:44,711   adding 'moleculekit/tools/__init__.py'
2024-07-11T14:23:44,713   adding 'moleculekit/tools/atomtyper.py'
2024-07-11T14:23:44,716   adding 'moleculekit/tools/autosegment.py'
2024-07-11T14:23:44,718   adding 'moleculekit/tools/crystalpacking.py'
2024-07-11T14:23:44,721   adding 'moleculekit/tools/detect.py'
2024-07-11T14:23:44,723   adding 'moleculekit/tools/docking.py'
2024-07-11T14:23:44,725   adding 'moleculekit/tools/graphalignment.py'
2024-07-11T14:23:44,727   adding 'moleculekit/tools/hhblitsprofile.py'
2024-07-11T14:23:44,728   adding 'moleculekit/tools/modelling.py'
2024-07-11T14:23:44,730   adding 'moleculekit/tools/moleculechecks.py'
2024-07-11T14:23:44,736   adding 'moleculekit/tools/preparation.py'
2024-07-11T14:23:44,739   adding 'moleculekit/tools/preparation_customres.py'
2024-07-11T14:23:44,741   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-07-11T14:23:44,744   adding 'moleculekit/tools/voxeldescriptors.py'
2024-07-11T14:23:44,746   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-07-11T14:23:44,747   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-07-11T14:23:44,840   adding 'moleculekit/wrapping/wrapping.cpp'
2024-07-11T14:23:44,850   adding 'moleculekit/wrapping/wrapping.pyx'
2024-07-11T14:23:44,852   adding 'moleculekit-1.9.1.dist-info/LICENSE'
2024-07-11T14:23:44,853   adding 'moleculekit-1.9.1.dist-info/METADATA'
2024-07-11T14:23:44,854   adding 'moleculekit-1.9.1.dist-info/WHEEL'
2024-07-11T14:23:44,855   adding 'moleculekit-1.9.1.dist-info/top_level.txt'
2024-07-11T14:23:44,861   adding 'moleculekit-1.9.1.dist-info/RECORD'
2024-07-11T14:23:45,036   removing build/bdist.linux-armv7l/wheel
2024-07-11T14:23:45,328   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-07-11T14:23:45,670   Created wheel for moleculekit: filename=moleculekit-1.9.1-cp39-cp39-linux_armv7l.whl size=14932985 sha256=7bfd68c4ee35c25aa2569cac08a2934d167dca7b1acd437b5ce788f78566e029
2024-07-11T14:23:45,671   Stored in directory: /tmp/pip-ephem-wheel-cache-ooyp6qe9/wheels/10/eb/1e/fdc35fda81fbd4143469e29318c20412cc957d4b59179ae4dd
2024-07-11T14:23:45,700 Successfully built moleculekit
2024-07-11T14:23:46,055 Removed build tracker: '/tmp/pip-build-tracker-atqtv3tc'