2024-07-11T15:21:26,460 Created temporary directory: /tmp/pip-build-tracker-3t8rbhs_
2024-07-11T15:21:26,461 Initialized build tracking at /tmp/pip-build-tracker-3t8rbhs_
2024-07-11T15:21:26,461 Created build tracker: /tmp/pip-build-tracker-3t8rbhs_
2024-07-11T15:21:26,462 Entered build tracker: /tmp/pip-build-tracker-3t8rbhs_
2024-07-11T15:21:26,462 Created temporary directory: /tmp/pip-wheel-ius0kiv5
2024-07-11T15:21:26,466 Created temporary directory: /tmp/pip-ephem-wheel-cache-etng8754
2024-07-11T15:21:26,493 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-11T15:21:26,496 2 location(s) to search for versions of moleculekit:
2024-07-11T15:21:26,496 * https://pypi.org/simple/moleculekit/
2024-07-11T15:21:26,496 * https://www.piwheels.org/simple/moleculekit/
2024-07-11T15:21:26,497 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-07-11T15:21:26,497 Getting page https://pypi.org/simple/moleculekit/
2024-07-11T15:21:26,499 Found index url https://pypi.org/simple/
2024-07-11T15:21:26,629 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-07-11T15:21:26,674   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,674   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-07-11T15:21:26,674   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,674   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-07-11T15:21:26,675   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,675   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-07-11T15:21:26,675   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,675   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-07-11T15:21:26,676   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,676   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-07-11T15:21:26,676   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,676   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-07-11T15:21:26,677   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,677   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-07-11T15:21:26,677   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,677   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-07-11T15:21:26,678   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,678   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-07-11T15:21:26,678   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,678   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-07-11T15:21:26,679   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,679   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-07-11T15:21:26,679   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,679   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-07-11T15:21:26,679   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,680   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-07-11T15:21:26,680   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,680   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-07-11T15:21:26,680   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,681   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-07-11T15:21:26,681   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,681   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-07-11T15:21:26,681   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,682   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-07-11T15:21:26,682   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,682   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-07-11T15:21:26,682   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,682   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-07-11T15:21:26,683   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,683   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-07-11T15:21:26,683   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,683   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-07-11T15:21:26,684   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,684   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-07-11T15:21:26,684   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,684   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-07-11T15:21:26,684   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,685   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-07-11T15:21:26,685   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,685   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-07-11T15:21:26,685   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,686   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-07-11T15:21:26,686   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,686   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-07-11T15:21:26,686   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,686   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-07-11T15:21:26,687   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,687   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-07-11T15:21:26,687   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,687   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-07-11T15:21:26,688   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,688   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-07-11T15:21:26,688   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,688   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-07-11T15:21:26,689   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-11T15:21:26,689   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2024-07-11T15:21:26,693   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
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2024-07-11T15:21:26,706   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-07-11T15:21:26,706   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-07-11T15:21:26,706   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-07-11T15:21:26,707   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-07-11T15:21:26,707   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-07-11T15:21:26,707   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-07-11T15:21:26,707   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-07-11T15:21:26,708   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-07-11T15:21:26,708   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-07-11T15:21:26,708   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-07-11T15:21:26,708   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-07-11T15:21:26,709   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-07-11T15:21:26,709   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-07-11T15:21:26,709   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-07-11T15:21:26,709   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-07-11T15:21:26,710   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-07-11T15:21:26,710   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-07-11T15:21:26,710   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-07-11T15:21:26,710   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-07-11T15:21:26,711   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-07-11T15:21:26,711   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-07-11T15:21:26,711   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-07-11T15:21:26,712   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-07-11T15:21:26,712   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-07-11T15:21:26,712   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-07-11T15:21:26,712   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-07-11T15:21:26,713   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-07-11T15:21:26,713   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-07-11T15:21:26,713   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-07-11T15:21:26,713   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-07-11T15:21:26,714   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-07-11T15:21:26,714   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-07-11T15:21:26,714   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-07-11T15:21:26,715   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-07-11T15:21:26,715   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-07-11T15:21:26,715   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-07-11T15:21:26,715   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-07-11T15:21:26,716   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-07-11T15:21:26,716   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-07-11T15:21:26,716   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-07-11T15:21:26,717   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-07-11T15:21:26,717   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-07-11T15:21:26,717   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-07-11T15:21:26,717   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-07-11T15:21:26,718   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-07-11T15:21:26,718   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-07-11T15:21:26,718   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-07-11T15:21:26,719   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-07-11T15:21:26,719   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-07-11T15:21:26,720   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-07-11T15:21:26,720   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-07-11T15:21:26,721   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-07-11T15:21:26,721   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-07-11T15:21:26,722   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-07-11T15:21:26,723   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-07-11T15:21:26,723   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-07-11T15:21:26,724   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-07-11T15:21:26,724   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-07-11T15:21:26,725   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-07-11T15:21:26,725   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-07-11T15:21:26,726   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-07-11T15:21:26,726   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-07-11T15:21:26,727   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-07-11T15:21:26,727   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-07-11T15:21:26,728   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-07-11T15:21:26,728   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-07-11T15:21:26,729   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-07-11T15:21:26,729   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2024-07-11T15:21:26,730   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-07-11T15:21:26,730   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-07-11T15:21:26,731   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-07-11T15:21:26,732   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-07-11T15:21:26,732   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-07-11T15:21:26,733   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-07-11T15:21:26,733   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-07-11T15:21:26,734   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-07-11T15:21:26,734   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-07-11T15:21:26,735   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-07-11T15:21:26,735   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-07-11T15:21:26,736   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-07-11T15:21:26,737   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-07-11T15:21:26,737   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-07-11T15:21:26,738   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-07-11T15:21:26,738   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-07-11T15:21:26,739   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-07-11T15:21:26,739   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-07-11T15:21:26,740   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-07-11T15:21:26,740   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-07-11T15:21:26,741   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-07-11T15:21:26,741   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-07-11T15:21:26,742   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-07-11T15:21:26,742   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-07-11T15:21:26,743   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-07-11T15:21:26,743   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-07-11T15:21:26,744   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-07-11T15:21:26,744   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-07-11T15:21:26,745   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-07-11T15:21:26,746   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-07-11T15:21:26,746   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-07-11T15:21:26,747   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-07-11T15:21:26,747   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-07-11T15:21:26,748   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-07-11T15:21:26,748   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-07-11T15:21:26,749   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-07-11T15:21:26,749   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-07-11T15:21:26,750   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-07-11T15:21:26,750   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-07-11T15:21:26,751   Found link https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.31
2024-07-11T15:21:26,752   Found link https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.32
2024-07-11T15:21:26,752   Found link https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.33
2024-07-11T15:21:26,753   Found link https://files.pythonhosted.org/packages/d4/0f/1b1f0d41c3ff855afca374140213f1c43b3a9659eebc4460899fead843ff/moleculekit-1.8.34.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.34
2024-07-11T15:21:26,753   Found link https://files.pythonhosted.org/packages/26/6b/1104888679e9faf8b0e4e9b15586ea7532e171fe127c06e067c9ad563238/moleculekit-1.8.35.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.35
2024-07-11T15:21:26,754   Found link https://files.pythonhosted.org/packages/cf/5e/035ee54b5606e7489eed8e94571ca014339f5a6959902eff9f40bf4e0d7f/moleculekit-1.8.36.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.36
2024-07-11T15:21:26,754   Found link https://files.pythonhosted.org/packages/38/d6/30462b4aeb3cb9ae0244bc9882779d3249e39393f5ea71c6abc2d36bb1ed/moleculekit-1.9.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.0
2024-07-11T15:21:26,755   Found link https://files.pythonhosted.org/packages/03/ac/c81679ee7481d8dd7e0fa576dafe3963c48c065ab2ca808b53f59693c211/moleculekit-1.9.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.1
2024-07-11T15:21:26,755   Found link https://files.pythonhosted.org/packages/32/f1/d21bc1d0589eb9e230a6f35f2650e452a0f85915c109cf8284747fea3232/moleculekit-1.9.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.2
2024-07-11T15:21:26,756   Found link https://files.pythonhosted.org/packages/ca/05/d8f5b1524d14a61baab43f3e90980410577ccf19eb191053c29e134c534f/moleculekit-1.9.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.3
2024-07-11T15:21:26,756 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-07-11T15:21:26,756 Getting page https://www.piwheels.org/simple/moleculekit/
2024-07-11T15:21:26,757 Found index url https://www.piwheels.org/simple/
2024-07-11T15:21:26,855 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-07-11T15:21:26,957   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.1-cp39-cp39-linux_armv6l.whl#sha256=7bfd68c4ee35c25aa2569cac08a2934d167dca7b1acd437b5ce788f78566e029 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,957   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.1-cp39-cp39-linux_armv7l.whl#sha256=7bfd68c4ee35c25aa2569cac08a2934d167dca7b1acd437b5ce788f78566e029 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,957   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp311-cp311-linux_armv6l.whl#sha256=d6035d34abe9a702dc48a7b6e979670c6e0eb97db1a3a940dbd9f96bfc42eb03 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,958   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp311-cp311-linux_armv7l.whl#sha256=d6035d34abe9a702dc48a7b6e979670c6e0eb97db1a3a940dbd9f96bfc42eb03 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,958   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp39-cp39-linux_armv6l.whl#sha256=98cbc4f7d5456ab2c8dd35319a4977fe968743136c62077f73fdf423356b3a99 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,958   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp39-cp39-linux_armv7l.whl#sha256=98cbc4f7d5456ab2c8dd35319a4977fe968743136c62077f73fdf423356b3a99 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,958   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp311-cp311-linux_armv6l.whl#sha256=e0fa24f661e395d9f38f9e1616422ff28e4ed401dd67c35c172ffccf1ea54038 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,958   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp311-cp311-linux_armv7l.whl#sha256=e0fa24f661e395d9f38f9e1616422ff28e4ed401dd67c35c172ffccf1ea54038 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,959   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp39-cp39-linux_armv6l.whl#sha256=671167765eb458b97e36ab9bd793dd20c4eec64fd47d38eba8e093b8427307b1 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,959   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp39-cp39-linux_armv7l.whl#sha256=671167765eb458b97e36ab9bd793dd20c4eec64fd47d38eba8e093b8427307b1 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,959   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp311-cp311-linux_armv6l.whl#sha256=39ce57e47150b9abdc5c79aee4f41a74f5f79b84caf1d9f038f68d172e3d11f3 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,959   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp311-cp311-linux_armv7l.whl#sha256=39ce57e47150b9abdc5c79aee4f41a74f5f79b84caf1d9f038f68d172e3d11f3 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,959   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp39-cp39-linux_armv6l.whl#sha256=bc4488b38699175360d9d00251d83750b68be24b494759299c9703344259af9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-11T15:21:26,960   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.35-cp39-cp39-linux_armv7l.whl#sha256=bc4488b38699175360d9d00251d83750b68be24b494759299c9703344259af9a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-07-11T15:21:27,002   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,002   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,002   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,003   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,003   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,003   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,003   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,003   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,003   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,004   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,004   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,004   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,004   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,004   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,005   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,005   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,005   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,005   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,005   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,005   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,006   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,006   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,006   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,006   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,006   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,007   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,007   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,007   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,007   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,007   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,008   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,008   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,008   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,008   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,008   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,008   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,009   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,009   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,009   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,009   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,009   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,010   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,010   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,010   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,010   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,010   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,010   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,011   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,011   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,011   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,011   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,011   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,012   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,012   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,012   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,012   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,012   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,012   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,013   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,013   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,013   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,017   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,018   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,019   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,019   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,019   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,019   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,021   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,021   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,021   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.2-py3-none-any.whl#sha256=70e4609cb3c674eb4fe10a08e84363015b5902e945d850197ef2b13b7cbfe4e0 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.0-py3-none-any.whl#sha256=6f3e1fa4e06e1223a1524393bc7ffeb8fb19caec93bb94da547be2ce0a526ca4 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.32-py3-none-any.whl#sha256=7ed0aed2d398d06856936c77943277e58b3c5ec588e619d1bd18e433bfec7564 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.30-py3-none-any.whl#sha256=891f8d9b242d2964c64a6142804f2c8951d94829491c38a737abb1ca8635bc09 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,025   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,025   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.21-py3-none-any.whl#sha256=3f591427a4c43521256cd46422de7c64268ec392e356b7ff3dbb8c0bc5e0c686 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,026   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.19-py3-none-any.whl#sha256=1005a5a682737b1ba3f4858ca3919c129caae8d962bf750308e4cf6e7d37e215 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,026   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.14-py3-none-any.whl#sha256=051435884ce3f924fc9ba4dcb342a0d0ac85ff52bda6e656389f9a6f7eefec84 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,027   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.12-py3-none-any.whl#sha256=8d96fbe0cf32ec0d217201a2f3274aedc42fb18f06b218394d4be0bfee25181a (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,027   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.8-py3-none-any.whl#sha256=716d25ae18a4a9a3c8cfb1f0b0399f72463490e4f85a66631f3e77c0ddc427e3 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-11T15:21:27,028   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2024-07-11T15:21:27,028 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-07-11T15:21:27,028 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-07-11T15:21:27,073 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-07-11T15:21:27,090 Collecting moleculekit==1.9.2
2024-07-11T15:21:27,092   Created temporary directory: /tmp/pip-unpack-wt7moevv
2024-07-11T15:21:27,135   Downloading moleculekit-1.9.2.tar.gz (6.8 MB)
2024-07-11T15:21:29,352   Added moleculekit==1.9.2 from https://files.pythonhosted.org/packages/32/f1/d21bc1d0589eb9e230a6f35f2650e452a0f85915c109cf8284747fea3232/moleculekit-1.9.2.tar.gz to build tracker '/tmp/pip-build-tracker-3t8rbhs_'
2024-07-11T15:21:29,361   Created temporary directory: /tmp/pip-build-env-o3rem83j
2024-07-11T15:21:29,370   Installing build dependencies: started
2024-07-11T15:21:29,371   Running command pip subprocess to install build dependencies
2024-07-11T15:21:30,537   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-07-11T15:21:31,067   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-11T15:21:32,553   Collecting setuptools
2024-07-11T15:21:32,573     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.3.0-py3-none-any.whl (931 kB)
2024-07-11T15:21:33,660   Collecting numpy>=1.18.5
2024-07-11T15:21:33,676     Using cached https://www.piwheels.org/simple/numpy/numpy-2.0.0-cp39-cp39-linux_armv7l.whl (5.8 MB)
2024-07-11T15:21:35,272   Collecting Cython>=0.29.21
2024-07-11T15:21:35,289     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-07-11T15:21:35,665   Collecting toml
2024-07-11T15:21:35,687     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-07-11T15:21:35,788   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-07-11T15:21:35,809     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-07-11T15:21:35,944   Collecting tomli (from versioneer[toml]==0.28)
2024-07-11T15:21:35,961     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-07-11T15:21:37,776   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-07-11T15:21:37,815     Creating /tmp/pip-build-env-o3rem83j/overlay/bin
2024-07-11T15:21:37,818     changing mode of /tmp/pip-build-env-o3rem83j/overlay/bin/versioneer to 755
2024-07-11T15:21:48,421     changing mode of /tmp/pip-build-env-o3rem83j/overlay/bin/f2py to 755
2024-07-11T15:21:48,424     changing mode of /tmp/pip-build-env-o3rem83j/overlay/bin/numpy-config to 755
2024-07-11T15:21:51,876     changing mode of /tmp/pip-build-env-o3rem83j/overlay/bin/cygdb to 755
2024-07-11T15:21:51,878     changing mode of /tmp/pip-build-env-o3rem83j/overlay/bin/cython to 755
2024-07-11T15:21:51,881     changing mode of /tmp/pip-build-env-o3rem83j/overlay/bin/cythonize to 755
2024-07-11T15:21:51,906   Successfully installed Cython-3.0.10 numpy-2.0.0 setuptools-70.3.0 toml-0.10.2 tomli-2.0.1 versioneer-0.28

2024-07-11T15:21:52,088   [notice] A new release of pip is available: 24.0 -> 24.1.2
2024-07-11T15:21:52,088   [notice] To update, run: python3 -m pip install --upgrade pip
2024-07-11T15:21:52,568   Installing build dependencies: finished with status 'done'
2024-07-11T15:21:52,573   Getting requirements to build wheel: started
2024-07-11T15:21:52,574   Running command Getting requirements to build wheel
2024-07-11T15:22:31,448   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-07-11T15:22:41,115   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T15:22:41,116   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T15:22:41,116   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T15:22:41,116   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T15:22:41,116   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T15:22:41,116   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T15:22:41,116   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T15:22:41,116   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T15:22:41,116   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T15:22:41,117   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T15:22:41,117   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-11T15:22:41,117   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-11T15:22:41,117   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-11T15:22:41,117   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-11T15:22:41,117   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-11T15:22:41,117   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-07-11T15:22:41,117   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-07-11T15:22:41,117   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-07-11T15:22:41,118   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-07-11T15:22:41,118   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-07-11T15:22:41,118   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-07-11T15:22:41,118   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-07-11T15:22:41,118   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-07-11T15:22:41,118   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-07-11T15:22:41,118   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-07-11T15:22:41,118   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-07-11T15:22:41,118   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-07-11T15:22:41,119   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-07-11T15:22:41,119   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-07-11T15:22:41,119   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-07-11T15:22:41,441   running egg_info
2024-07-11T15:22:41,448   writing moleculekit.egg-info/PKG-INFO
2024-07-11T15:22:41,452   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-07-11T15:22:41,454   writing requirements to moleculekit.egg-info/requires.txt
2024-07-11T15:22:41,455   writing top-level names to moleculekit.egg-info/top_level.txt
2024-07-11T15:22:41,488   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,489   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,489   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,489   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,489   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,489   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,489   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,490   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,490   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,490   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,490   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,490   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,490   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,490   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,490   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,491   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,491   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,491   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,491   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,491   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,491   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,491   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,492   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,492   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,492   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,492   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,492   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:41,492   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-11T15:22:41,493   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-11T15:22:41,515   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-11T15:22:41,556   reading manifest template 'MANIFEST.in'
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2024-07-11T15:22:41,894   adding license file 'LICENSE'
2024-07-11T15:22:41,912   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-11T15:22:43,509   Getting requirements to build wheel: finished with status 'done'
2024-07-11T15:22:43,513   Created temporary directory: /tmp/pip-modern-metadata-xowseqwt
2024-07-11T15:22:43,516   Preparing metadata (pyproject.toml): started
2024-07-11T15:22:43,517   Running command Preparing metadata (pyproject.toml)
2024-07-11T15:22:45,923   running dist_info
2024-07-11T15:22:45,925   creating /tmp/pip-modern-metadata-xowseqwt/moleculekit.egg-info
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2024-07-11T15:22:45,970   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,970   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,970   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,970   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,970   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,971   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,971   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,971   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,971   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,971   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,971   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,973   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,973   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,973   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,973   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,973   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,974   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,974   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,974   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,975   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,975   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,975   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,976   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,976   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,976   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,976   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:45,982   reading manifest file '/tmp/pip-modern-metadata-xowseqwt/moleculekit.egg-info/SOURCES.txt'
2024-07-11T15:22:45,985   reading manifest template 'MANIFEST.in'
2024-07-11T15:22:46,234   no previously-included directories found matching 'moleculekit/test-data'
2024-07-11T15:22:46,235   no previously-included directories found matching 'moleculekit/tests'
2024-07-11T15:22:46,236   no previously-included directories found matching 'package'
2024-07-11T15:22:46,236   adding license file 'LICENSE'
2024-07-11T15:22:46,250   writing manifest file '/tmp/pip-modern-metadata-xowseqwt/moleculekit.egg-info/SOURCES.txt'
2024-07-11T15:22:46,259   creating '/tmp/pip-modern-metadata-xowseqwt/moleculekit-1.9.2.dist-info'
2024-07-11T15:22:46,447   Preparing metadata (pyproject.toml): finished with status 'done'
2024-07-11T15:22:46,454   Source in /tmp/pip-wheel-ius0kiv5/moleculekit_7c824926e3c546ff87926d90365ea21e has version 1.9.2, which satisfies requirement moleculekit==1.9.2 from https://files.pythonhosted.org/packages/32/f1/d21bc1d0589eb9e230a6f35f2650e452a0f85915c109cf8284747fea3232/moleculekit-1.9.2.tar.gz
2024-07-11T15:22:46,455   Removed moleculekit==1.9.2 from https://files.pythonhosted.org/packages/32/f1/d21bc1d0589eb9e230a6f35f2650e452a0f85915c109cf8284747fea3232/moleculekit-1.9.2.tar.gz from build tracker '/tmp/pip-build-tracker-3t8rbhs_'
2024-07-11T15:22:46,461 Created temporary directory: /tmp/pip-unpack-xcdh9ux4
2024-07-11T15:22:46,462 Created temporary directory: /tmp/pip-unpack-5d7k_rcz
2024-07-11T15:22:46,469 Building wheels for collected packages: moleculekit
2024-07-11T15:22:46,473   Created temporary directory: /tmp/pip-wheel-_qjgocv3
2024-07-11T15:22:46,474   Destination directory: /tmp/pip-wheel-_qjgocv3
2024-07-11T15:22:46,476   Building wheel for moleculekit (pyproject.toml): started
2024-07-11T15:22:46,477   Running command Building wheel for moleculekit (pyproject.toml)
2024-07-11T15:22:48,783   running bdist_wheel
2024-07-11T15:22:48,799   running build
2024-07-11T15:22:48,799   running build_py
2024-07-11T15:22:48,806   creating build
2024-07-11T15:22:48,807   creating build/lib.linux-armv7l-cpython-39
2024-07-11T15:22:48,808   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,809   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,811   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,813   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,815   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,817   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,818   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,820   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,822   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,824   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,825   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,827   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,829   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,830   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,832   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,834   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,839   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,842   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,846   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,848   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,850   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,853   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:48,855   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T15:22:48,855   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T15:22:48,857   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T15:22:48,860   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T15:22:48,863   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,864   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,866   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,868   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,871   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,873   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,874   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,876   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,879   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,881   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,883   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,886   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,888   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,890   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,893   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,894   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-11T15:22:48,897   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-11T15:22:48,898   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-11T15:22:48,900   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-11T15:22:48,903   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T15:22:48,904   copying moleculekit/smallmol/smallmolcdp.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T15:22:48,906   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T15:22:48,908   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T15:22:48,910   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T15:22:48,912   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T15:22:48,914   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T15:22:48,917   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-11T15:22:48,920   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-07-11T15:22:48,921   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-07-11T15:22:48,924   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,924   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,926   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,928   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,931   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,933   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,935   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,937   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,939   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,941   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,944   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,946   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,949   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,951   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,954   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-11T15:22:48,956   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-11T15:22:48,957   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-11T15:22:48,959   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-11T15:22:48,963   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-11T15:22:48,966   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T15:22:48,967   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T15:22:48,969   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T15:22:48,971   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T15:22:48,973   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-11T15:22:48,976   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T15:22:48,977   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T15:22:48,978   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T15:22:48,980   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T15:22:48,983   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-11T15:22:48,985   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T15:22:48,986   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T15:22:48,987   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T15:22:48,990   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T15:22:48,993   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T15:22:48,995   copying moleculekit/pdbx/reader/BinaryCifReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-11T15:22:48,998   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-11T15:22:48,999   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-11T15:22:49,000   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-11T15:22:49,003   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T15:22:49,004   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T15:22:49,006   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T15:22:49,008   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T15:22:49,009   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-11T15:22:49,011   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-11T15:22:49,012   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-11T15:22:49,014   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-11T15:22:49,015   running egg_info
2024-07-11T15:22:49,021   writing moleculekit.egg-info/PKG-INFO
2024-07-11T15:22:49,024   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-07-11T15:22:49,026   writing requirements to moleculekit.egg-info/requires.txt
2024-07-11T15:22:49,027   writing top-level names to moleculekit.egg-info/top_level.txt
2024-07-11T15:22:49,045   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,045   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,046   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,046   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,046   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,046   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,046   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,046   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,046   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,047   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,047   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,047   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,047   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,047   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,047   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,047   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,047   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,048   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,048   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,048   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,048   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,048   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,048   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,048   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,049   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,049   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,049   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,049   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,049   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,049   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,049   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,049   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,050   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,050   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,050   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,050   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,050   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,050   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,050   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,050   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,051   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,051   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,051   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,051   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,051   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,051   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,051   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,051   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,052   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,052   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,052   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,052   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,052   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,052   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,052   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,053   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,053   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,053   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,053   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,053   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,055   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,055   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,055   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,055   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,055   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,056   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,056   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,056   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,056   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,056   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,057   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,057   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,057   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,058   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,058   dependency /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-11T15:22:49,064   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-11T15:22:49,074   reading manifest template 'MANIFEST.in'
2024-07-11T15:22:49,323   no previously-included directories found matching 'moleculekit/test-data'
2024-07-11T15:22:49,324   no previously-included directories found matching 'moleculekit/tests'
2024-07-11T15:22:49,325   no previously-included directories found matching 'package'
2024-07-11T15:22:49,325   adding license file 'LICENSE'
2024-07-11T15:22:49,344   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-11T15:22:49,355   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-07-11T15:22:49,356   !!

2024-07-11T15:22:49,356           ********************************************************************************
2024-07-11T15:22:49,356           ############################
2024-07-11T15:22:49,356           # Package would be ignored #
2024-07-11T15:22:49,356           ############################
2024-07-11T15:22:49,356           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-07-11T15:22:49,356           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,357           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,357           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-07-11T15:22:49,357           to the `packages` configuration field.

2024-07-11T15:22:49,357           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,357           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,357           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,358           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,358           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,358           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-07-11T15:22:49,358           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-07-11T15:22:49,358           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,358           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,359           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,359           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,359           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,359           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,359                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,360                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,360                 directory, all directories are treated like packages.
2024-07-11T15:22:49,360           ********************************************************************************

2024-07-11T15:22:49,360   !!
2024-07-11T15:22:49,360     check.warn(importable)
2024-07-11T15:22:49,360   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-07-11T15:22:49,361   !!

2024-07-11T15:22:49,361           ********************************************************************************
2024-07-11T15:22:49,361           ############################
2024-07-11T15:22:49,361           # Package would be ignored #
2024-07-11T15:22:49,361           ############################
2024-07-11T15:22:49,361           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-07-11T15:22:49,361           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,362           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,362           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-07-11T15:22:49,362           to the `packages` configuration field.

2024-07-11T15:22:49,362           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,362           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,362           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,363           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,363           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,363           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-07-11T15:22:49,363           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-07-11T15:22:49,363           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,363           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,363           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,364           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,364           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,364           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,364                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,364                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,365                 directory, all directories are treated like packages.
2024-07-11T15:22:49,365           ********************************************************************************

2024-07-11T15:22:49,365   !!
2024-07-11T15:22:49,365     check.warn(importable)
2024-07-11T15:22:49,365   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-07-11T15:22:49,365   !!

2024-07-11T15:22:49,365           ********************************************************************************
2024-07-11T15:22:49,366           ############################
2024-07-11T15:22:49,366           # Package would be ignored #
2024-07-11T15:22:49,366           ############################
2024-07-11T15:22:49,366           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-07-11T15:22:49,366           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,366           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,366           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-07-11T15:22:49,366           to the `packages` configuration field.

2024-07-11T15:22:49,367           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,367           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,367           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,367           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,367           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,367           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-07-11T15:22:49,368           already explicitly excluding 'moleculekit.cython_utils' via
2024-07-11T15:22:49,368           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,368           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,368           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,368           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,368           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,369           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,369                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,369                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,369                 directory, all directories are treated like packages.
2024-07-11T15:22:49,369           ********************************************************************************

2024-07-11T15:22:49,369   !!
2024-07-11T15:22:49,369     check.warn(importable)
2024-07-11T15:22:49,369   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-07-11T15:22:49,370   !!

2024-07-11T15:22:49,370           ********************************************************************************
2024-07-11T15:22:49,370           ############################
2024-07-11T15:22:49,370           # Package would be ignored #
2024-07-11T15:22:49,370           ############################
2024-07-11T15:22:49,370           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-07-11T15:22:49,370           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,371           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,371           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-07-11T15:22:49,371           to the `packages` configuration field.

2024-07-11T15:22:49,371           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,371           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,371           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,371           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,372           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,372           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-07-11T15:22:49,372           already explicitly excluding 'moleculekit.distance_utils' via
2024-07-11T15:22:49,372           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,372           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,372           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,372           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,373           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,373           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,373                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,373                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,373                 directory, all directories are treated like packages.
2024-07-11T15:22:49,373           ********************************************************************************

2024-07-11T15:22:49,374   !!
2024-07-11T15:22:49,374     check.warn(importable)
2024-07-11T15:22:49,374   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-07-11T15:22:49,374   !!

2024-07-11T15:22:49,374           ********************************************************************************
2024-07-11T15:22:49,374           ############################
2024-07-11T15:22:49,374           # Package would be ignored #
2024-07-11T15:22:49,374           ############################
2024-07-11T15:22:49,375           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-07-11T15:22:49,375           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,375           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,375           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-07-11T15:22:49,375           to the `packages` configuration field.

2024-07-11T15:22:49,375           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,375           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,375           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,376           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,376           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,376           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-07-11T15:22:49,376           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-07-11T15:22:49,376           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,376           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,376           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,377           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,377           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,377           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,377                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,378                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,378                 directory, all directories are treated like packages.
2024-07-11T15:22:49,378           ********************************************************************************

2024-07-11T15:22:49,378   !!
2024-07-11T15:22:49,378     check.warn(importable)
2024-07-11T15:22:49,378   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-07-11T15:22:49,378   !!

2024-07-11T15:22:49,379           ********************************************************************************
2024-07-11T15:22:49,379           ############################
2024-07-11T15:22:49,379           # Package would be ignored #
2024-07-11T15:22:49,379           ############################
2024-07-11T15:22:49,379           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-07-11T15:22:49,379           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,379           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,379           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-07-11T15:22:49,379           to the `packages` configuration field.

2024-07-11T15:22:49,380           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,380           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,380           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,380           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,380           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,381           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-07-11T15:22:49,381           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-07-11T15:22:49,381           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,381           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,381           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,381           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,382           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,382           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,382                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,382                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,382                 directory, all directories are treated like packages.
2024-07-11T15:22:49,382           ********************************************************************************

2024-07-11T15:22:49,383   !!
2024-07-11T15:22:49,383     check.warn(importable)
2024-07-11T15:22:49,383   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-07-11T15:22:49,383   !!

2024-07-11T15:22:49,383           ********************************************************************************
2024-07-11T15:22:49,383           ############################
2024-07-11T15:22:49,383           # Package would be ignored #
2024-07-11T15:22:49,383           ############################
2024-07-11T15:22:49,383           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-07-11T15:22:49,384           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,384           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,384           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-07-11T15:22:49,384           to the `packages` configuration field.

2024-07-11T15:22:49,384           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,384           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,384           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,385           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,385           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,385           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-07-11T15:22:49,385           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-07-11T15:22:49,385           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,385           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,386           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,386           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,386           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,386           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,386                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,386                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,387                 directory, all directories are treated like packages.
2024-07-11T15:22:49,387           ********************************************************************************

2024-07-11T15:22:49,387   !!
2024-07-11T15:22:49,387     check.warn(importable)
2024-07-11T15:22:49,387   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-07-11T15:22:49,387   !!

2024-07-11T15:22:49,387           ********************************************************************************
2024-07-11T15:22:49,388           ############################
2024-07-11T15:22:49,388           # Package would be ignored #
2024-07-11T15:22:49,388           ############################
2024-07-11T15:22:49,388           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-07-11T15:22:49,388           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,388           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,388           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-07-11T15:22:49,388           to the `packages` configuration field.

2024-07-11T15:22:49,389           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,389           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,389           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,389           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,389           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,389           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-07-11T15:22:49,390           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-07-11T15:22:49,390           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,390           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,390           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,390           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,390           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,391           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,391                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,391                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,391                 directory, all directories are treated like packages.
2024-07-11T15:22:49,391           ********************************************************************************

2024-07-11T15:22:49,391   !!
2024-07-11T15:22:49,391     check.warn(importable)
2024-07-11T15:22:49,392   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-07-11T15:22:49,392   !!

2024-07-11T15:22:49,392           ********************************************************************************
2024-07-11T15:22:49,392           ############################
2024-07-11T15:22:49,392           # Package would be ignored #
2024-07-11T15:22:49,392           ############################
2024-07-11T15:22:49,392           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-07-11T15:22:49,392           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,393           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,393           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-07-11T15:22:49,393           to the `packages` configuration field.

2024-07-11T15:22:49,393           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,393           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,393           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,394           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,394           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,394           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-07-11T15:22:49,394           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-07-11T15:22:49,394           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,394           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,395           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,395           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,395           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,395           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,395                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,396                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,396                 directory, all directories are treated like packages.
2024-07-11T15:22:49,396           ********************************************************************************

2024-07-11T15:22:49,396   !!
2024-07-11T15:22:49,396     check.warn(importable)
2024-07-11T15:22:49,396   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-07-11T15:22:49,396   !!

2024-07-11T15:22:49,397           ********************************************************************************
2024-07-11T15:22:49,397           ############################
2024-07-11T15:22:49,397           # Package would be ignored #
2024-07-11T15:22:49,397           ############################
2024-07-11T15:22:49,397           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-07-11T15:22:49,397           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,397           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,398           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-07-11T15:22:49,398           to the `packages` configuration field.

2024-07-11T15:22:49,398           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,398           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,398           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,398           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,399           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,399           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-07-11T15:22:49,399           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-07-11T15:22:49,399           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,399           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,399           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,399           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,400           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,400           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,400                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,400                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,400                 directory, all directories are treated like packages.
2024-07-11T15:22:49,400           ********************************************************************************

2024-07-11T15:22:49,401   !!
2024-07-11T15:22:49,401     check.warn(importable)
2024-07-11T15:22:49,401   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-07-11T15:22:49,401   !!

2024-07-11T15:22:49,401           ********************************************************************************
2024-07-11T15:22:49,401           ############################
2024-07-11T15:22:49,401           # Package would be ignored #
2024-07-11T15:22:49,401           ############################
2024-07-11T15:22:49,402           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-07-11T15:22:49,402           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,402           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,402           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-07-11T15:22:49,402           to the `packages` configuration field.

2024-07-11T15:22:49,402           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,402           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,403           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,403           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,403           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,403           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-07-11T15:22:49,403           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-07-11T15:22:49,403           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,404           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,404           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,404           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,404           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,404           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,404                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,405                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,405                 directory, all directories are treated like packages.
2024-07-11T15:22:49,405           ********************************************************************************

2024-07-11T15:22:49,405   !!
2024-07-11T15:22:49,405     check.warn(importable)
2024-07-11T15:22:49,405   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-07-11T15:22:49,405   !!

2024-07-11T15:22:49,406           ********************************************************************************
2024-07-11T15:22:49,406           ############################
2024-07-11T15:22:49,406           # Package would be ignored #
2024-07-11T15:22:49,406           ############################
2024-07-11T15:22:49,406           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-07-11T15:22:49,406           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,406           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,406           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-07-11T15:22:49,407           to the `packages` configuration field.

2024-07-11T15:22:49,407           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,407           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,407           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,407           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,407           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,408           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-07-11T15:22:49,408           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-07-11T15:22:49,408           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,408           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,408           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,408           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,408           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,409           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,409                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,409                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,409                 directory, all directories are treated like packages.
2024-07-11T15:22:49,409           ********************************************************************************

2024-07-11T15:22:49,409   !!
2024-07-11T15:22:49,409     check.warn(importable)
2024-07-11T15:22:49,410   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-07-11T15:22:49,410   !!

2024-07-11T15:22:49,410           ********************************************************************************
2024-07-11T15:22:49,410           ############################
2024-07-11T15:22:49,410           # Package would be ignored #
2024-07-11T15:22:49,410           ############################
2024-07-11T15:22:49,410           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-07-11T15:22:49,410           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,411           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,411           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-07-11T15:22:49,411           to the `packages` configuration field.

2024-07-11T15:22:49,411           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,411           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,412           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,412           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,412           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,412           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-07-11T15:22:49,412           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-07-11T15:22:49,413           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,413           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,413           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,413           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,413           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,413           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,414                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,414                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,414                 directory, all directories are treated like packages.
2024-07-11T15:22:49,414           ********************************************************************************

2024-07-11T15:22:49,414   !!
2024-07-11T15:22:49,415     check.warn(importable)
2024-07-11T15:22:49,415   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-07-11T15:22:49,415   !!

2024-07-11T15:22:49,415           ********************************************************************************
2024-07-11T15:22:49,415           ############################
2024-07-11T15:22:49,415           # Package would be ignored #
2024-07-11T15:22:49,415           ############################
2024-07-11T15:22:49,416           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-07-11T15:22:49,416           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,416           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,416           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-07-11T15:22:49,416           to the `packages` configuration field.

2024-07-11T15:22:49,417           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,417           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,417           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,417           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,418           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,418           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-07-11T15:22:49,418           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-07-11T15:22:49,418           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,419           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,419           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,419           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,419           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,420           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,420                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,420                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,420                 directory, all directories are treated like packages.
2024-07-11T15:22:49,420           ********************************************************************************

2024-07-11T15:22:49,421   !!
2024-07-11T15:22:49,421     check.warn(importable)
2024-07-11T15:22:49,421   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-07-11T15:22:49,422   !!

2024-07-11T15:22:49,422           ********************************************************************************
2024-07-11T15:22:49,422           ############################
2024-07-11T15:22:49,422           # Package would be ignored #
2024-07-11T15:22:49,423           ############################
2024-07-11T15:22:49,423           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-07-11T15:22:49,423           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,424           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,424           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-07-11T15:22:49,424           to the `packages` configuration field.

2024-07-11T15:22:49,424           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,424           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,424           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,425           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,425           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,425           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-07-11T15:22:49,426           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-07-11T15:22:49,426           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,426           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,426           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,427           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,427           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,427           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,427                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,427                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,427                 directory, all directories are treated like packages.
2024-07-11T15:22:49,428           ********************************************************************************

2024-07-11T15:22:49,428   !!
2024-07-11T15:22:49,428     check.warn(importable)
2024-07-11T15:22:49,428   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-07-11T15:22:49,428   !!

2024-07-11T15:22:49,428           ********************************************************************************
2024-07-11T15:22:49,428           ############################
2024-07-11T15:22:49,429           # Package would be ignored #
2024-07-11T15:22:49,429           ############################
2024-07-11T15:22:49,429           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-07-11T15:22:49,429           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,429           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,429           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-07-11T15:22:49,429           to the `packages` configuration field.

2024-07-11T15:22:49,430           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,430           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,430           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,430           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,430           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,430           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-07-11T15:22:49,431           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-07-11T15:22:49,431           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,431           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,431           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,431           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,431           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,432           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,433                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,434                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,434                 directory, all directories are treated like packages.
2024-07-11T15:22:49,434           ********************************************************************************

2024-07-11T15:22:49,435   !!
2024-07-11T15:22:49,435     check.warn(importable)
2024-07-11T15:22:49,435   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-07-11T15:22:49,435   !!

2024-07-11T15:22:49,436           ********************************************************************************
2024-07-11T15:22:49,436           ############################
2024-07-11T15:22:49,437           # Package would be ignored #
2024-07-11T15:22:49,437           ############################
2024-07-11T15:22:49,437           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-07-11T15:22:49,437           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,438           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,438           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-07-11T15:22:49,438           to the `packages` configuration field.

2024-07-11T15:22:49,439           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,439           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,440           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,440           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,441           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,441           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-07-11T15:22:49,441           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-07-11T15:22:49,442           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,442           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,442           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,443           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,443           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,444           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,444                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,445                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,445                 directory, all directories are treated like packages.
2024-07-11T15:22:49,445           ********************************************************************************

2024-07-11T15:22:49,446   !!
2024-07-11T15:22:49,446     check.warn(importable)
2024-07-11T15:22:49,446   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-07-11T15:22:49,447   !!

2024-07-11T15:22:49,447           ********************************************************************************
2024-07-11T15:22:49,447           ############################
2024-07-11T15:22:49,448           # Package would be ignored #
2024-07-11T15:22:49,448           ############################
2024-07-11T15:22:49,448           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-07-11T15:22:49,448           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,449           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,449           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-07-11T15:22:49,450           to the `packages` configuration field.

2024-07-11T15:22:49,450           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,450           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,451           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,451           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,452           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,452           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-07-11T15:22:49,452           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-07-11T15:22:49,453           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,453           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,453           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,453           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,454           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,454           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,454                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,455                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,455                 directory, all directories are treated like packages.
2024-07-11T15:22:49,455           ********************************************************************************

2024-07-11T15:22:49,456   !!
2024-07-11T15:22:49,456     check.warn(importable)
2024-07-11T15:22:49,456   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-07-11T15:22:49,456   !!

2024-07-11T15:22:49,456           ********************************************************************************
2024-07-11T15:22:49,456           ############################
2024-07-11T15:22:49,457           # Package would be ignored #
2024-07-11T15:22:49,457           ############################
2024-07-11T15:22:49,457           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-07-11T15:22:49,457           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,457           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,457           package, please make sure that 'moleculekit.share' is explicitly added
2024-07-11T15:22:49,457           to the `packages` configuration field.

2024-07-11T15:22:49,458           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,458           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,458           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,459           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,459           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,459           If you don't want 'moleculekit.share' to be distributed and are
2024-07-11T15:22:49,459           already explicitly excluding 'moleculekit.share' via
2024-07-11T15:22:49,459           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,460           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,460           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,460           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,461           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,461           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,461                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,462                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,462                 directory, all directories are treated like packages.
2024-07-11T15:22:49,462           ********************************************************************************

2024-07-11T15:22:49,462   !!
2024-07-11T15:22:49,462     check.warn(importable)
2024-07-11T15:22:49,462   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-07-11T15:22:49,462   !!

2024-07-11T15:22:49,463           ********************************************************************************
2024-07-11T15:22:49,463           ############################
2024-07-11T15:22:49,463           # Package would be ignored #
2024-07-11T15:22:49,463           ############################
2024-07-11T15:22:49,464           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-07-11T15:22:49,464           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,464           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,464           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-07-11T15:22:49,464           to the `packages` configuration field.

2024-07-11T15:22:49,465           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,465           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,465           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,466           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,466           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,466           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-07-11T15:22:49,466           already explicitly excluding 'moleculekit.share.atomselect' via
2024-07-11T15:22:49,467           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,467           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,467           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,467           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,468           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,468           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,468                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,468                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,469                 directory, all directories are treated like packages.
2024-07-11T15:22:49,469           ********************************************************************************

2024-07-11T15:22:49,469   !!
2024-07-11T15:22:49,469     check.warn(importable)
2024-07-11T15:22:49,469   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-07-11T15:22:49,469   !!

2024-07-11T15:22:49,469           ********************************************************************************
2024-07-11T15:22:49,470           ############################
2024-07-11T15:22:49,470           # Package would be ignored #
2024-07-11T15:22:49,470           ############################
2024-07-11T15:22:49,470           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-07-11T15:22:49,470           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,470           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,470           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-07-11T15:22:49,471           to the `packages` configuration field.

2024-07-11T15:22:49,471           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,471           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,471           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,471           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,471           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,472           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-07-11T15:22:49,472           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-07-11T15:22:49,472           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,472           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,472           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,472           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,473           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,473           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,473                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,473                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,473                 directory, all directories are treated like packages.
2024-07-11T15:22:49,473           ********************************************************************************

2024-07-11T15:22:49,474   !!
2024-07-11T15:22:49,474     check.warn(importable)
2024-07-11T15:22:49,474   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-07-11T15:22:49,474   !!

2024-07-11T15:22:49,474           ********************************************************************************
2024-07-11T15:22:49,474           ############################
2024-07-11T15:22:49,474           # Package would be ignored #
2024-07-11T15:22:49,475           ############################
2024-07-11T15:22:49,475           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-07-11T15:22:49,475           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,475           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,475           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-07-11T15:22:49,475           to the `packages` configuration field.

2024-07-11T15:22:49,475           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,476           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,476           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,476           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,476           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,476           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-07-11T15:22:49,476           already explicitly excluding 'moleculekit.tmalign' via
2024-07-11T15:22:49,477           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,477           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,477           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,477           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,477           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,478           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,478                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,478                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,478                 directory, all directories are treated like packages.
2024-07-11T15:22:49,478           ********************************************************************************

2024-07-11T15:22:49,478   !!
2024-07-11T15:22:49,478     check.warn(importable)
2024-07-11T15:22:49,479   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-07-11T15:22:49,479   !!

2024-07-11T15:22:49,479           ********************************************************************************
2024-07-11T15:22:49,479           ############################
2024-07-11T15:22:49,480           # Package would be ignored #
2024-07-11T15:22:49,480           ############################
2024-07-11T15:22:49,480           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-07-11T15:22:49,480           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,480           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,480           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-07-11T15:22:49,481           to the `packages` configuration field.

2024-07-11T15:22:49,481           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,481           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,481           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,482           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,482           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,482           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-07-11T15:22:49,482           already explicitly excluding 'moleculekit.tmalign.include' via
2024-07-11T15:22:49,483           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,483           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,483           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,483           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,483           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,484           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,484                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,484                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,484                 directory, all directories are treated like packages.
2024-07-11T15:22:49,484           ********************************************************************************

2024-07-11T15:22:49,484   !!
2024-07-11T15:22:49,484     check.warn(importable)
2024-07-11T15:22:49,484   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-07-11T15:22:49,485   !!

2024-07-11T15:22:49,485           ********************************************************************************
2024-07-11T15:22:49,485           ############################
2024-07-11T15:22:49,485           # Package would be ignored #
2024-07-11T15:22:49,485           ############################
2024-07-11T15:22:49,485           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-07-11T15:22:49,485           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,486           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,486           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-07-11T15:22:49,486           to the `packages` configuration field.

2024-07-11T15:22:49,486           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,486           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,486           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,487           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,487           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,487           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-07-11T15:22:49,487           already explicitly excluding 'moleculekit.tmalign.src' via
2024-07-11T15:22:49,487           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,487           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,487           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,488           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,488           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,489           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,489                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,490                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,490                 directory, all directories are treated like packages.
2024-07-11T15:22:49,490           ********************************************************************************

2024-07-11T15:22:49,491   !!
2024-07-11T15:22:49,491     check.warn(importable)
2024-07-11T15:22:49,491   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-07-11T15:22:49,491   !!

2024-07-11T15:22:49,492           ********************************************************************************
2024-07-11T15:22:49,492           ############################
2024-07-11T15:22:49,492           # Package would be ignored #
2024-07-11T15:22:49,493           ############################
2024-07-11T15:22:49,493           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-07-11T15:22:49,493           but it is absent from setuptools' `packages` configuration.

2024-07-11T15:22:49,494           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-11T15:22:49,494           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-07-11T15:22:49,494           to the `packages` configuration field.

2024-07-11T15:22:49,495           Alternatively, you can also rely on setuptools' discovery methods
2024-07-11T15:22:49,495           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-11T15:22:49,495           instead of `find_packages(...)`/`find:`).

2024-07-11T15:22:49,496           You can read more about "package discovery" on setuptools documentation page:

2024-07-11T15:22:49,497           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-11T15:22:49,497           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-07-11T15:22:49,497           already explicitly excluding 'moleculekit.wrapping' via
2024-07-11T15:22:49,497           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-11T15:22:49,498           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-11T15:22:49,498           combination with a more fine grained `package-data` configuration.

2024-07-11T15:22:49,499           You can read more about "package data files" on setuptools documentation page:

2024-07-11T15:22:49,499           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-11T15:22:49,500           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-11T15:22:49,500                 even if it does not contain any `.py` files.
2024-07-11T15:22:49,501                 On the other hand, currently there is no concept of package data
2024-07-11T15:22:49,501                 directory, all directories are treated like packages.
2024-07-11T15:22:49,501           ********************************************************************************

2024-07-11T15:22:49,502   !!
2024-07-11T15:22:49,502     check.warn(importable)
2024-07-11T15:22:49,502   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:49,503   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:49,503   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-11T15:22:49,503   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-11T15:22:49,504   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-11T15:22:49,504   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-11T15:22:49,504   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-11T15:22:49,515   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-11T15:22:49,517   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-11T15:22:49,518   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-11T15:22:49,543   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-11T15:22:49,545   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-11T15:22:49,546   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-11T15:22:49,594   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-11T15:22:49,597   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-11T15:22:49,597   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-11T15:22:49,628   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-11T15:22:49,630   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-11T15:22:49,631   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-11T15:22:49,634   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-11T15:22:49,636   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-11T15:22:49,903   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-07-11T15:22:49,904   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-07-11T15:22:49,906   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-07-11T15:22:49,906   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,907   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,909   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,911   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,913   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,915   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,917   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,918   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,920   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,923   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,925   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,927   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,929   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,931   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,933   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,935   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,937   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,939   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,941   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,943   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,945   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,947   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,950   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,952   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,954   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,956   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,958   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,960   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,962   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,964   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,966   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,968   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,969   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,971   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,973   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,975   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,977   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,979   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,981   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,983   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,985   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,986   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,988   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,990   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,992   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,994   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,996   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,997   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:49,999   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,001   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,004   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,005   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,007   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,009   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,011   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,013   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,015   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,017   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,019   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,021   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,023   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,025   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,027   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,029   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,030   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,032   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,035   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,037   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,038   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,040   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,042   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,044   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,046   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,048   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,050   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,052   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,054   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,056   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,058   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,060   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,062   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,064   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,066   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,068   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,070   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,072   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,074   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,076   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,078   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,080   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,082   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,084   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,086   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,088   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,090   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,092   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,094   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,096   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,098   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,099   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,102   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,103   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,105   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,107   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,109   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,111   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,113   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,115   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,117   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,119   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,121   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,123   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,125   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,127   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,129   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,131   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,134   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,136   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,137   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,139   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,141   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,143   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,145   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,147   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,149   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,151   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,153   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,155   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,157   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,159   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,161   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,163   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,165   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,167   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,169   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,171   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,173   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,175   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,177   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,179   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,182   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,184   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,186   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,188   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,190   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,192   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,194   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,196   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,198   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,200   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,201   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,203   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,205   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,207   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,209   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,211   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,213   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,215   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,217   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,219   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,221   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,223   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,225   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,227   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,229   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,231   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,233   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,235   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,237   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,239   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,241   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,243   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,245   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,247   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,249   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,251   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-11T15:22:50,253   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T15:22:50,254   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T15:22:50,273   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T15:22:50,275   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T15:22:50,278   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-07-11T15:22:50,278   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-07-11T15:22:50,281   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-11T15:22:50,282   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-11T15:22:50,287   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-11T15:22:50,289   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-11T15:22:50,310   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-11T15:22:50,313   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T15:22:50,314   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T15:22:50,328   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T15:22:50,330   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T15:22:50,333   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-11T15:22:50,334   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-11T15:22:50,336   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-11T15:22:50,338   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-11T15:22:50,341   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-11T15:22:50,343   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-11T15:22:50,346   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T15:22:50,347   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T15:22:50,374   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T15:22:50,376   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T15:22:50,378   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T15:22:50,379   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T15:22:50,381   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T15:22:50,383   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T15:22:50,386   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T15:22:50,388   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-11T15:22:50,391   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-11T15:22:50,392   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-11T15:22:50,395   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T15:22:50,396   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T15:22:50,421   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T15:22:50,424   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T15:22:50,426   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T15:22:50,428   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T15:22:50,455   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T15:22:50,457   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T15:22:50,459   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T15:22:50,460   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T15:22:50,462   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T15:22:50,464   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T15:22:50,467   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T15:22:50,469   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T15:22:50,471   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-11T15:22:50,473   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T15:22:50,474   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T15:22:50,476   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T15:22:50,480   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T15:22:50,483   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T15:22:50,485   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T15:22:50,487   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-11T15:22:50,488   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-11T15:22:50,517   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-11T15:22:50,519   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-11T15:22:50,520   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-11T15:22:50,546   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-11T15:22:50,549   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-11T15:22:50,550   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-11T15:22:50,579   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-11T15:22:50,582   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-11T15:22:50,583   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-11T15:22:50,618   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-11T15:22:50,634   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-07-11T15:22:50,634   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.9.2'
2024-07-11T15:22:50,634   running build_ext
2024-07-11T15:22:50,646   building 'moleculekit.interactions.hbonds' extension
2024-07-11T15:22:50,647   creating build/temp.linux-armv7l-cpython-39
2024-07-11T15:22:50,647   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-07-11T15:22:50,648   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-11T15:22:50,649   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-11T15:22:50,650   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-07-11T15:22:50,912   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:22:50,912                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:22:50,912                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:22:50,912                    from moleculekit/interactions/hbonds/hbonds.cpp:1265:
2024-07-11T15:22:50,912   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:22:50,912      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:22:50,913         |  ^~~~~~~
2024-07-11T15:22:51,358   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T15:22:51,358                    from moleculekit/interactions/hbonds/hbonds.cpp:1269:
2024-07-11T15:22:51,358   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T15:22:51,358   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T15:22:51,358     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T15:22:51,359         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T15:23:14,034   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-07-11T15:23:14,035   moleculekit/interactions/hbonds/hbonds.cpp:21469:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:23:14,035   21469 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-07-11T15:23:14,035         |                                                    ^~~~~~~~~~~~~~~
2024-07-11T15:23:14,035   moleculekit/interactions/hbonds/hbonds.cpp:20486:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-07-11T15:23:14,036   20486 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-07-11T15:23:14,036         |                                                         ^~~~~~~~~~~~~~~
2024-07-11T15:23:17,185   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:23:17,499   building 'moleculekit.interactions.pipi' extension
2024-07-11T15:23:17,500   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-11T15:23:17,501   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-07-11T15:23:17,742   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:23:17,742                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:23:17,743                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:23:17,743                    from moleculekit/interactions/pipi/pipi.cpp:1265:
2024-07-11T15:23:17,743   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:23:17,743      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:23:17,743         |  ^~~~~~~
2024-07-11T15:23:18,212   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T15:23:18,212                    from moleculekit/interactions/pipi/pipi.cpp:1269:
2024-07-11T15:23:18,213   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T15:23:18,213   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T15:23:18,213     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T15:23:18,213         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T15:23:45,906   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:23:46,229   building 'moleculekit.interactions.cationpi' extension
2024-07-11T15:23:46,230   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-11T15:23:46,231   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-07-11T15:23:46,485   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:23:46,485                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:23:46,485                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:23:46,485                    from moleculekit/interactions/cationpi/cationpi.cpp:1265:
2024-07-11T15:23:46,485   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:23:46,486      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:23:46,486         |  ^~~~~~~
2024-07-11T15:23:46,964   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T15:23:46,965                    from moleculekit/interactions/cationpi/cationpi.cpp:1269:
2024-07-11T15:23:46,965   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T15:23:46,965   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T15:23:46,965     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T15:23:46,965         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T15:24:14,485   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:24:14,803   building 'moleculekit.interactions.sigmahole' extension
2024-07-11T15:24:14,804   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-11T15:24:14,804   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-07-11T15:24:15,041   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:24:15,042                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:24:15,042                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:24:15,042                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1265:
2024-07-11T15:24:15,042   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:24:15,042      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:24:15,042         |  ^~~~~~~
2024-07-11T15:24:15,479   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T15:24:15,479                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1269:
2024-07-11T15:24:15,479   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T15:24:15,479   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T15:24:15,479     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T15:24:15,479         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T15:24:42,578   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:24:42,902   building 'moleculekit.wrapping' extension
2024-07-11T15:24:42,903   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-11T15:24:42,903   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-07-11T15:24:43,134   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:24:43,134                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:24:43,135                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:24:43,135                    from moleculekit/wrapping/wrapping.cpp:1265:
2024-07-11T15:24:43,135   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:24:43,135      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:24:43,135         |  ^~~~~~~
2024-07-11T15:24:43,568   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T15:24:43,568                    from moleculekit/wrapping/wrapping.cpp:1269:
2024-07-11T15:24:43,568   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T15:24:43,569   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T15:24:43,569     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T15:24:43,569         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:08,972   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:25:09,190   building 'moleculekit.bondguesser_utils' extension
2024-07-11T15:25:09,190   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-11T15:25:09,191   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-07-11T15:25:09,424   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:25:09,424                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:25:09,424                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:25:09,425                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1265:
2024-07-11T15:25:09,425   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:25:09,425      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:25:09,425         |  ^~~~~~~
2024-07-11T15:25:09,852   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T15:25:09,852                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1269:
2024-07-11T15:25:09,852   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T15:25:09,853   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T15:25:09,853     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T15:25:09,853         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,964   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-07-11T15:25:10,965   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20255:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-11T15:25:10,965   20255 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-07-11T15:25:10,965         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T15:25:10,965   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20267:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-11T15:25:10,965   20267 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-07-11T15:25:10,965         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T15:25:10,966   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20279:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-11T15:25:10,966   20279 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-07-11T15:25:10,966         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T15:25:10,966   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20318:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,966   20318 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T15:25:10,966         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,966   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20357:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,967   20357 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T15:25:10,967         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,967   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20396:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,967   20396 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T15:25:10,967         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,967   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20435:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,968   20435 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T15:25:10,968         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,968   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20441:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,968   20441 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T15:25:10,968         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,968   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20482:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,968   20482 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T15:25:10,968         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,969   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20488:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,969   20488 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T15:25:10,969         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,969   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20529:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,969   20529 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T15:25:10,969         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,969   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20535:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,970   20535 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T15:25:10,970         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,970   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20576:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,970   20576 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T15:25:10,970         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,970   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20629:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,970   20629 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T15:25:10,971         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,971   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20676:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,971   20676 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T15:25:10,971         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,971   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20717:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,971   20717 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T15:25:10,972         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,972   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20723:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,972   20723 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T15:25:10,972         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,972   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20729:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,972   20729 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T15:25:10,972         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,973   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20776:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,973   20776 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-11T15:25:10,973         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,973   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20782:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,973   20782 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T15:25:10,973         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,973   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20823:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,973   20823 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-11T15:25:10,974         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,974   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20835:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,974   20835 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T15:25:10,974         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,974   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20888:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-11T15:25:10,974   20888 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-11T15:25:10,974         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,993   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-07-11T15:25:10,993   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21510:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T15:25:10,994   21510 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-07-11T15:25:10,994         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-07-11T15:25:10,994   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21547:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T15:25:10,994   21547 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-07-11T15:25:10,994         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-07-11T15:25:34,088   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:25:34,391   building 'moleculekit.atomselect_utils' extension
2024-07-11T15:25:34,392   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-11T15:25:34,393   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-07-11T15:25:34,636   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:25:34,636                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:25:34,637                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:25:34,637                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1282:
2024-07-11T15:25:34,637   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:25:34,637      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:25:34,637         |  ^~~~~~~
2024-07-11T15:25:35,116   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T15:25:35,116                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1286:
2024-07-11T15:25:35,116   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T15:25:35,116   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T15:25:35,116     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T15:25:35,117         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T15:25:36,377   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-07-11T15:25:36,378   moleculekit/atomselect_utils/atomselect_utils.cpp:23709:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T15:25:36,378   23709 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-07-11T15:25:36,378         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-07-11T15:25:36,384   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-07-11T15:25:36,384   moleculekit/atomselect_utils/atomselect_utils.cpp:23961:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T15:25:36,384   23961 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-07-11T15:25:36,384         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T15:25:36,390   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-07-11T15:25:36,390   moleculekit/atomselect_utils/atomselect_utils.cpp:24228:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T15:25:36,390   24228 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-07-11T15:25:36,390         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T15:26:06,738   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:26:07,080   building 'moleculekit.distance_utils' extension
2024-07-11T15:26:07,081   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-11T15:26:07,082   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-07-11T15:26:07,327   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:26:07,327                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:26:07,327                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:26:07,328                    from moleculekit/distance_utils/distance_utils.cpp:1265:
2024-07-11T15:26:07,328   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:26:07,328      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:26:07,328         |  ^~~~~~~
2024-07-11T15:26:07,775   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T15:26:07,775                    from moleculekit/distance_utils/distance_utils.cpp:1269:
2024-07-11T15:26:07,775   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T15:26:07,776   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T15:26:07,776     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T15:26:07,776         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T15:26:08,953   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-07-11T15:26:08,953   moleculekit/distance_utils/distance_utils.cpp:21813:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T15:26:08,954   21813 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-07-11T15:26:08,954         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T15:26:08,954   moleculekit/distance_utils/distance_utils.cpp:21825:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T15:26:08,954   21825 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-07-11T15:26:08,954         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-07-11T15:26:42,039   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:26:42,375   building 'moleculekit.occupancy_utils' extension
2024-07-11T15:26:42,375   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-11T15:26:42,376   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-07-11T15:26:42,614   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:26:42,614                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:26:42,614                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:26:42,614                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1265:
2024-07-11T15:26:42,614   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:26:42,615      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:26:42,615         |  ^~~~~~~
2024-07-11T15:26:43,046   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T15:26:43,046                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1269:
2024-07-11T15:26:43,046   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T15:26:43,046   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T15:26:43,047     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T15:26:43,047         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:05,683   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:27:05,897   building 'moleculekit.cython_utils' extension
2024-07-11T15:27:05,897   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-11T15:27:05,898   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-07-11T15:27:06,132   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:27:06,132                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:27:06,132                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:27:06,132                    from moleculekit/cython_utils/cython_utils.cpp:1265:
2024-07-11T15:27:06,133   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:27:06,133      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:27:06,133         |  ^~~~~~~
2024-07-11T15:27:06,592   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T15:27:06,592                    from moleculekit/cython_utils/cython_utils.cpp:1269:
2024-07-11T15:27:06,592   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T15:27:06,593   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T15:27:06,593     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T15:27:06,593         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:31,593   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:27:31,912   building 'moleculekit.xtc' extension
2024-07-11T15:27:31,913   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-11T15:27:31,914   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-11T15:27:31,914   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-11T15:27:31,915   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-07-11T15:27:32,157   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,157      66 |  "OK",
2024-07-11T15:27:32,157         |  ^~~~
2024-07-11T15:27:32,158   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,158      67 |  "Header",
2024-07-11T15:27:32,158         |  ^~~~~~~~
2024-07-11T15:27:32,158   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,158      68 |  "String",
2024-07-11T15:27:32,158         |  ^~~~~~~~
2024-07-11T15:27:32,159   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,159      69 |  "Double",
2024-07-11T15:27:32,159         |  ^~~~~~~~
2024-07-11T15:27:32,159   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,159      70 |  "Integer",
2024-07-11T15:27:32,159         |  ^~~~~~~~~
2024-07-11T15:27:32,160   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,160      71 |  "Float",
2024-07-11T15:27:32,160         |  ^~~~~~~
2024-07-11T15:27:32,160   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,160      72 |  "Unsigned integer",
2024-07-11T15:27:32,160         |  ^~~~~~~~~~~~~~~~~~
2024-07-11T15:27:32,161   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,161      73 |  "Compressed 3D coordinate",
2024-07-11T15:27:32,161         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:32,161   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,161      74 |  "Closing file",
2024-07-11T15:27:32,161         |  ^~~~~~~~~~~~~~
2024-07-11T15:27:32,162   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,162      75 |  "Magic number",
2024-07-11T15:27:32,162         |  ^~~~~~~~~~~~~~
2024-07-11T15:27:32,162   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,162      76 |  "Not enough memory",
2024-07-11T15:27:32,162         |  ^~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:32,163   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,163      77 |  "End of file",
2024-07-11T15:27:32,163         |  ^~~~~~~~~~~~~
2024-07-11T15:27:32,163   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:32,163      78 |  "File not found"
2024-07-11T15:27:32,163         |  ^~~~~~~~~~~~~~~~
2024-07-11T15:27:32,171   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-07-11T15:27:32,172   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,172     459 |     while (size >= num && num_of_bits < 32)
2024-07-11T15:27:32,172         |            ~~~~~^~~~~~
2024-07-11T15:27:32,173   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-07-11T15:27:32,173   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:32,173     505 |     while (bytes[num_of_bytes] >= num)
2024-07-11T15:27:32,173         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-11T15:27:32,176   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-07-11T15:27:32,176   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,176     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-07-11T15:27:32,177         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:32,177   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,177     616 |   for (i = 0; i < num_of_bytes; i++)
2024-07-11T15:27:32,177         |               ~~^~~~~~~~~~~~~~
2024-07-11T15:27:32,178   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,178     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-07-11T15:27:32,178         |               ~~^~~~~~~~~~~~~~~~
2024-07-11T15:27:32,179   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-07-11T15:27:32,180   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:32,180     664 |   if (lastbits < num_of_bits)
2024-07-11T15:27:32,180         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-07-11T15:27:32,184   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-07-11T15:27:32,184   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:32,184     785 |  if(size3>xfp->buf1size)
2024-07-11T15:27:32,184         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T15:27:32,186   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:32,187     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T15:27:32,187         |                   ^
2024-07-11T15:27:32,190   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,190     932 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T15:27:32,190         |        ~~~~~~~~~^~~~~~~~
2024-07-11T15:27:32,190   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,191     935 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T15:27:32,191         |        ~~~~~~~~~^~~~~~~~
2024-07-11T15:27:32,191   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,191     938 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T15:27:32,191         |        ~~~~~~~~~^~~~~~~~
2024-07-11T15:27:32,192   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,192     945 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T15:27:32,192         |        ~~~~~~~~~^~~~~~~~
2024-07-11T15:27:32,193   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,193     948 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T15:27:32,193         |        ~~~~~~~~~^~~~~~~~
2024-07-11T15:27:32,193   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,194     951 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T15:27:32,194         |        ~~~~~~~~~^~~~~~~~
2024-07-11T15:27:32,195   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-11T15:27:32,195     756 |  int smallidx,  minidx, maxidx;
2024-07-11T15:27:32,195         |                 ^~~~~~
2024-07-11T15:27:32,195   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-11T15:27:32,195     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-11T15:27:32,195         |                         ^~~~~~
2024-07-11T15:27:32,196   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-11T15:27:32,196     763 |  int errval=1;
2024-07-11T15:27:32,196         |      ^~~~~~
2024-07-11T15:27:32,198   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-07-11T15:27:32,199   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:32,199    1011 |  if(size3>xfp->buf1size)
2024-07-11T15:27:32,199         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T15:27:32,201   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,201    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T15:27:32,202         |                     ~~~~~~~~^~~~~~~
2024-07-11T15:27:32,202   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,202    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T15:27:32,202         |                    ~~~~~~~~^~~~~~~
2024-07-11T15:27:32,203   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,203    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T15:27:32,203         |                    ~~~~~~~~^~~~~~~
2024-07-11T15:27:32,204   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,205    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-07-11T15:27:32,205         |                  ^
2024-07-11T15:27:32,205   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:32,205    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T15:27:32,205         |                   ^
2024-07-11T15:27:32,209   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,209    1275 |  if(tmp==(unsigned int)buf2[0])
2024-07-11T15:27:32,209         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:32,209   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-11T15:27:32,209    1001 |  int errval;
2024-07-11T15:27:32,209         |      ^~~~~~
2024-07-11T15:27:32,212   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-07-11T15:27:32,212   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:32,212    1316 |  if(size3>xfp->buf1size)
2024-07-11T15:27:32,212         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T15:27:32,214   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:32,214    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T15:27:32,214         |                   ^
2024-07-11T15:27:32,217   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-11T15:27:32,217    1289 |  int smallidx,  maxidx, minidx;
2024-07-11T15:27:32,217         |                         ^~~~~~
2024-07-11T15:27:32,217   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-11T15:27:32,217    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-11T15:27:32,218         |                         ^~~~~~
2024-07-11T15:27:32,218   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-11T15:27:32,218    1297 |  int errval=1;
2024-07-11T15:27:32,218         |      ^~~~~~
2024-07-11T15:27:32,219   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-07-11T15:27:32,219   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:32,219    1513 |  if(size3>xfp->buf1size) {
2024-07-11T15:27:32,220         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T15:27:32,223   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,224    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-07-11T15:27:32,224         |                  ^
2024-07-11T15:27:32,224   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:32,224    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T15:27:32,224         |                   ^
2024-07-11T15:27:32,228   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:32,228    1743 |  if(tmp==(unsigned int)buf2[0])
2024-07-11T15:27:32,228         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:32,228   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-11T15:27:32,228    1504 |  int errval=1;
2024-07-11T15:27:32,228         |      ^~~~~~
2024-07-11T15:27:34,459   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-07-11T15:27:34,711   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-07-11T15:27:35,283   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-07-11T15:27:35,283   moleculekit/fileformats/xtc/src/xtc.cpp:234:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T15:27:35,283     234 |   for (aidx = 0; aidx < natoms; aidx++)
2024-07-11T15:27:35,283         |                  ~~~~~^~~~~~~~
2024-07-11T15:27:35,289   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-07-11T15:27:35,289   moleculekit/fileformats/xtc/src/xtc.cpp:436:16: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T15:27:35,289     436 |  for (f = 0; f < nframes; f++)
2024-07-11T15:27:35,290         |              ~~^~~~~~~~~
2024-07-11T15:27:35,290   moleculekit/fileformats/xtc/src/xtc.cpp:451:17: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T15:27:35,290     451 |   for (i = 0; i < natoms; i++)
2024-07-11T15:27:35,290         |               ~~^~~~~~~~
2024-07-11T15:27:35,292   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-07-11T15:27:35,293   moleculekit/fileformats/xtc/src/xtc.cpp:541:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T15:27:35,293     541 |    for (aidx = 0; aidx < natoms; aidx++)
2024-07-11T15:27:35,293         |                   ~~~~~^~~~~~~~
2024-07-11T15:27:35,295   moleculekit/fileformats/xtc/src/xtc.cpp:610:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-11T15:27:35,295     610 |    for (aidx = 0; aidx < natoms; aidx++)
2024-07-11T15:27:35,295         |                   ~~~~~^~~~~~~~
2024-07-11T15:27:36,077   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-07-11T15:27:36,319   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:27:36,319                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:27:36,319                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:27:36,320                    from moleculekit/fileformats/xtc/xtc.cpp:1269:
2024-07-11T15:27:36,320   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:27:36,320      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:27:36,320         |  ^~~~~~~
2024-07-11T15:27:36,756   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-11T15:27:36,756                    from moleculekit/fileformats/xtc/xtc.cpp:1273:
2024-07-11T15:27:36,756   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-11T15:27:36,756   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-11T15:27:36,757     405 |     return ((longdouble_t *) &z)[0];
2024-07-11T15:27:36,757         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:56,501   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:27:56,814   building 'moleculekit.trr' extension
2024-07-11T15:27:56,815   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-07-11T15:27:56,933   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-07-11T15:27:57,166   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,166      66 |  "OK",
2024-07-11T15:27:57,166         |  ^~~~
2024-07-11T15:27:57,166   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,167      67 |  "Header",
2024-07-11T15:27:57,167         |  ^~~~~~~~
2024-07-11T15:27:57,167   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,167      68 |  "String",
2024-07-11T15:27:57,167         |  ^~~~~~~~
2024-07-11T15:27:57,167   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,167      69 |  "Double",
2024-07-11T15:27:57,168         |  ^~~~~~~~
2024-07-11T15:27:57,168   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,168      70 |  "Integer",
2024-07-11T15:27:57,168         |  ^~~~~~~~~
2024-07-11T15:27:57,168   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,168      71 |  "Float",
2024-07-11T15:27:57,168         |  ^~~~~~~
2024-07-11T15:27:57,169   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,169      72 |  "Unsigned integer",
2024-07-11T15:27:57,169         |  ^~~~~~~~~~~~~~~~~~
2024-07-11T15:27:57,169   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,169      73 |  "Compressed 3D coordinate",
2024-07-11T15:27:57,169         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:57,169   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,169      74 |  "Closing file",
2024-07-11T15:27:57,170         |  ^~~~~~~~~~~~~~
2024-07-11T15:27:57,170   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,170      75 |  "Magic number",
2024-07-11T15:27:57,170         |  ^~~~~~~~~~~~~~
2024-07-11T15:27:57,170   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,170      76 |  "Not enough memory",
2024-07-11T15:27:57,170         |  ^~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:57,171   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,171      77 |  "End of file",
2024-07-11T15:27:57,171         |  ^~~~~~~~~~~~~
2024-07-11T15:27:57,171   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-11T15:27:57,171      78 |  "File not found"
2024-07-11T15:27:57,171         |  ^~~~~~~~~~~~~~~~
2024-07-11T15:27:57,175   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-07-11T15:27:57,175   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,176     459 |     while (size >= num && num_of_bits < 32)
2024-07-11T15:27:57,176         |            ~~~~~^~~~~~
2024-07-11T15:27:57,176   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-07-11T15:27:57,176   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:57,176     505 |     while (bytes[num_of_bytes] >= num)
2024-07-11T15:27:57,176         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-11T15:27:57,178   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-07-11T15:27:57,179   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,179     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-07-11T15:27:57,179         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:57,179   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,179     616 |   for (i = 0; i < num_of_bytes; i++)
2024-07-11T15:27:57,179         |               ~~^~~~~~~~~~~~~~
2024-07-11T15:27:57,180   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,180     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-07-11T15:27:57,180         |               ~~^~~~~~~~~~~~~~~~
2024-07-11T15:27:57,180   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-07-11T15:27:57,180   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:57,180     664 |   if (lastbits < num_of_bits)
2024-07-11T15:27:57,180         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-07-11T15:27:57,184   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-07-11T15:27:57,184   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:57,184     785 |  if(size3>xfp->buf1size)
2024-07-11T15:27:57,184         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T15:27:57,185   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:57,186     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T15:27:57,186         |                   ^
2024-07-11T15:27:57,188   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,188     932 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T15:27:57,188         |        ~~~~~~~~~^~~~~~~~
2024-07-11T15:27:57,189   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,189     935 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T15:27:57,189         |        ~~~~~~~~~^~~~~~~~
2024-07-11T15:27:57,189   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,189     938 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T15:27:57,189         |        ~~~~~~~~~^~~~~~~~
2024-07-11T15:27:57,190   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,190     945 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T15:27:57,190         |        ~~~~~~~~~^~~~~~~~
2024-07-11T15:27:57,190   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,190     948 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T15:27:57,190         |        ~~~~~~~~~^~~~~~~~
2024-07-11T15:27:57,190   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,191     951 |     if(countmjh >= size3 ) { return -1; }
2024-07-11T15:27:57,191         |        ~~~~~~~~~^~~~~~~~
2024-07-11T15:27:57,191   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-11T15:27:57,191     756 |  int smallidx,  minidx, maxidx;
2024-07-11T15:27:57,191         |                 ^~~~~~
2024-07-11T15:27:57,191   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-11T15:27:57,191     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-11T15:27:57,191         |                         ^~~~~~
2024-07-11T15:27:57,192   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-11T15:27:57,192     763 |  int errval=1;
2024-07-11T15:27:57,192         |      ^~~~~~
2024-07-11T15:27:57,192   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-07-11T15:27:57,193   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:57,193    1011 |  if(size3>xfp->buf1size)
2024-07-11T15:27:57,193         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T15:27:57,195   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,195    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T15:27:57,195         |                     ~~~~~~~~^~~~~~~
2024-07-11T15:27:57,195   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,195    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T15:27:57,196         |                    ~~~~~~~~^~~~~~~
2024-07-11T15:27:57,196   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,196    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-11T15:27:57,196         |                    ~~~~~~~~^~~~~~~
2024-07-11T15:27:57,198   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,198    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-07-11T15:27:57,198         |                  ^
2024-07-11T15:27:57,198   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:57,198    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T15:27:57,198         |                   ^
2024-07-11T15:27:57,202   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,202    1275 |  if(tmp==(unsigned int)buf2[0])
2024-07-11T15:27:57,202         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:57,202   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-11T15:27:57,202    1001 |  int errval;
2024-07-11T15:27:57,203         |      ^~~~~~
2024-07-11T15:27:57,205   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-07-11T15:27:57,205   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:57,205    1316 |  if(size3>xfp->buf1size)
2024-07-11T15:27:57,206         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T15:27:57,207   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:57,207    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T15:27:57,207         |                   ^
2024-07-11T15:27:57,210   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-11T15:27:57,210    1289 |  int smallidx,  maxidx, minidx;
2024-07-11T15:27:57,210         |                         ^~~~~~
2024-07-11T15:27:57,210   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-11T15:27:57,210    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-11T15:27:57,211         |                         ^~~~~~
2024-07-11T15:27:57,211   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-11T15:27:57,211    1297 |  int errval=1;
2024-07-11T15:27:57,211         |      ^~~~~~
2024-07-11T15:27:57,212   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-07-11T15:27:57,212   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:57,212    1513 |  if(size3>xfp->buf1size) {
2024-07-11T15:27:57,213         |     ~~~~~^~~~~~~~~~~~~~
2024-07-11T15:27:57,216   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,217    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-07-11T15:27:57,217         |                  ^
2024-07-11T15:27:57,217   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:27:57,217    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-11T15:27:57,217         |                   ^
2024-07-11T15:27:57,221   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:27:57,221    1743 |  if(tmp==(unsigned int)buf2[0])
2024-07-11T15:27:57,221         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:27:57,221   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-11T15:27:57,221    1504 |  int errval=1;
2024-07-11T15:27:57,221         |      ^~~~~~
2024-07-11T15:27:59,444   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-07-11T15:27:59,547   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-07-11T15:27:59,548   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-07-11T15:27:59,548     111 |         if (slen != strlen(version)+1)
2024-07-11T15:27:59,548         |                  ^~
2024-07-11T15:27:59,548   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-07-11T15:27:59,548     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-07-11T15:27:59,548         |                                              ^~
2024-07-11T15:28:00,114   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-07-11T15:28:00,449   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:28:00,449                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:28:00,449                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:28:00,450                    from moleculekit/fileformats/xtc/trr.c:1261:
2024-07-11T15:28:00,450   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:28:00,450      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:28:00,450         |  ^~~~~~~
2024-07-11T15:28:01,056   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-07-11T15:28:01,065   moleculekit/fileformats/xtc/trr.c:16804:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-07-11T15:28:01,065   16804 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-07-11T15:28:01,065         |                                     ^~
2024-07-11T15:28:21,339   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-07-11T15:28:21,339   moleculekit/fileformats/xtc/trr.c:1163:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:21,339    1163 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-11T15:28:21,340         |                                        ^~~~~~~~~~~~~~~
2024-07-11T15:28:21,348   moleculekit/fileformats/xtc/trr.c:14714:7: note: ‘__pyx_v_status’ was declared here
2024-07-11T15:28:21,348   14714 |   int __pyx_v_status;
2024-07-11T15:28:21,348         |       ^~~~~~~~~~~~~~
2024-07-11T15:28:31,678   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-07-11T15:28:31,685   moleculekit/fileformats/xtc/trr.c:12013:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,685   12013 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-07-11T15:28:31,685         |                   ^
2024-07-11T15:28:31,692   moleculekit/fileformats/xtc/trr.c:12009:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,692   12009 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T15:28:31,692         |                   ^
2024-07-11T15:28:31,693   moleculekit/fileformats/xtc/trr.c:2485:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,693    2485 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-07-11T15:28:31,693         |                                                                                               ^
2024-07-11T15:28:31,699   moleculekit/fileformats/xtc/trr.c:10545:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-07-11T15:28:31,699   10545 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-07-11T15:28:31,699         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-07-11T15:28:31,705   moleculekit/fileformats/xtc/trr.c:12003:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,706   12003 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-07-11T15:28:31,706         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-11T15:28:31,713   moleculekit/fileformats/xtc/trr.c:11956:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,713   11956 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-07-11T15:28:31,713         |                   ^
2024-07-11T15:28:31,720   moleculekit/fileformats/xtc/trr.c:11952:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,720   11952 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T15:28:31,720         |                   ^
2024-07-11T15:28:31,721   moleculekit/fileformats/xtc/trr.c:2485:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,721    2485 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-07-11T15:28:31,721         |                                                                                               ^
2024-07-11T15:28:31,727   moleculekit/fileformats/xtc/trr.c:10561:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-07-11T15:28:31,727   10561 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-07-11T15:28:31,727         |                     ^~~~~~~~~~~~~~~~~~~~
2024-07-11T15:28:31,733   moleculekit/fileformats/xtc/trr.c:11946:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,733   11946 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-07-11T15:28:31,733         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-11T15:28:31,739   moleculekit/fileformats/xtc/trr.c:12345:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,739   12345 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T15:28:31,740         |                 ^
2024-07-11T15:28:31,747   moleculekit/fileformats/xtc/trr.c:12341:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,747   12341 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-11T15:28:31,747         |                 ^
2024-07-11T15:28:31,754   moleculekit/fileformats/xtc/trr.c:12186:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,754   12186 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T15:28:31,754         |                   ^
2024-07-11T15:28:31,761   moleculekit/fileformats/xtc/trr.c:12182:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,761   12182 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-11T15:28:31,762         |                   ^
2024-07-11T15:28:31,767   moleculekit/fileformats/xtc/trr.c:12238:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,768   12238 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-11T15:28:31,768         |                   ^
2024-07-11T15:28:31,775   moleculekit/fileformats/xtc/trr.c:12234:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:31,775   12234 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-11T15:28:31,775         |                   ^
2024-07-11T15:28:38,187   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:28:38,367   building 'moleculekit.dcd' extension
2024-07-11T15:28:38,368   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-11T15:28:38,369   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-11T15:28:38,371   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-07-11T15:28:38,711   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:28:38,711                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:28:38,711                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:28:38,711                    from moleculekit/fileformats/dcd/dcd.c:1256:
2024-07-11T15:28:38,711   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:28:38,711      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:28:38,712         |  ^~~~~~~
2024-07-11T15:28:39,737   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-07-11T15:28:39,737                    from moleculekit/fileformats/dcd/dcd.c:1262:
2024-07-11T15:28:39,738   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-07-11T15:28:39,738     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-07-11T15:28:39,738         |            ^~~~~~~~~~~~~
2024-07-11T15:28:39,738   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-07-11T15:28:39,738     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-07-11T15:28:39,738         |            ^~~~~~~~~~~~~~
2024-07-11T15:28:39,738   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-07-11T15:28:39,739     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-07-11T15:28:39,739         |            ^~~~~~~~~~~~~~~
2024-07-11T15:28:39,739   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-07-11T15:28:39,739     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-07-11T15:28:39,739         |                   ^~~~~~~~~
2024-07-11T15:28:39,739   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-07-11T15:28:39,739     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-07-11T15:28:39,739         |                   ^~~~~~~~~
2024-07-11T15:28:39,740   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-07-11T15:28:39,740     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-07-11T15:28:39,740         |                   ^~~~~~~~~
2024-07-11T15:28:39,740   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-07-11T15:28:39,740     394 | static int fio_fclose(fio_fd fd) {
2024-07-11T15:28:39,740         |            ^~~~~~~~~~
2024-07-11T15:28:39,740   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-07-11T15:28:39,740     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-07-11T15:28:39,741         |            ^~~~~~~~
2024-07-11T15:28:52,390   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-07-11T15:28:52,390   moleculekit/fileformats/dcd/dcd.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:28:52,390    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-11T15:28:52,390         |                                        ^~~~~~~~~~~~~~~
2024-07-11T15:28:52,395   moleculekit/fileformats/dcd/dcd.c:8476:7: note: ‘__pyx_v_i’ was declared here
2024-07-11T15:28:52,395    8476 |   int __pyx_v_i;
2024-07-11T15:28:52,395         |       ^~~~~~~~~
2024-07-11T15:28:55,621   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-07-11T15:28:55,807   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-07-11T15:28:55,807   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:28:55,808     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-07-11T15:28:55,808         |                                                       ^~
2024-07-11T15:28:55,808   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:28:55,808     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-07-11T15:28:55,808         |                                                      ^~
2024-07-11T15:28:55,808   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:28:55,809     194 |     if (input_integer[0] != dcdcordmagic)
2024-07-11T15:28:55,809         |                          ^~
2024-07-11T15:28:55,812   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:28:55,812     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-07-11T15:28:55,812         |                                               ^~
2024-07-11T15:28:55,812   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-11T15:28:55,812     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-07-11T15:28:55,813         |                                               ^~
2024-07-11T15:28:55,816   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-07-11T15:28:55,816   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:28:55,816     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-07-11T15:28:55,816         |                       ^~
2024-07-11T15:28:55,817   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-11T15:28:55,817     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-07-11T15:28:55,817         |                                                 ^~
2024-07-11T15:28:55,839   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-07-11T15:28:55,840   At top level:
2024-07-11T15:28:55,840   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-07-11T15:28:55,840      96 | static void swap2_aligned(void *v, long ndata) {
2024-07-11T15:28:55,840         |             ^~~~~~~~~~~~~
2024-07-11T15:28:55,840   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-07-11T15:28:55,841      32 | static void swap2_unaligned(void *v, long ndata) {
2024-07-11T15:28:55,841         |             ^~~~~~~~~~~~~~~
2024-07-11T15:28:55,841   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-07-11T15:28:55,841   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-07-11T15:28:55,841     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-07-11T15:28:55,841         |            ^~~~~~~~~~~~~
2024-07-11T15:28:55,841   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-07-11T15:28:55,842     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-07-11T15:28:55,842         |            ^~~~~~~~~~~~~~
2024-07-11T15:28:56,949   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:28:57,096   building 'moleculekit.binpos' extension
2024-07-11T15:28:57,096   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-11T15:28:57,097   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-11T15:28:57,098   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-07-11T15:28:57,438   In file included from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-11T15:28:57,438                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-11T15:28:57,438                    from /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-11T15:28:57,438                    from moleculekit/fileformats/binpos/binpos.c:1256:
2024-07-11T15:28:57,438   /tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-11T15:28:57,439      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-11T15:28:57,439         |  ^~~~~~~
2024-07-11T15:29:10,870   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-07-11T15:29:10,875   moleculekit/fileformats/binpos/binpos.c:8499:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:29:10,875    8499 |   if (__pyx_t_1) {
2024-07-11T15:29:10,875         |      ^
2024-07-11T15:29:10,880   moleculekit/fileformats/binpos/binpos.c:7976:7: note: ‘__pyx_v_status’ was declared here
2024-07-11T15:29:10,880    7976 |   int __pyx_v_status;
2024-07-11T15:29:10,880         |       ^~~~~~~~~~~~~~
2024-07-11T15:29:10,881   moleculekit/fileformats/binpos/binpos.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-11T15:29:10,881    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-11T15:29:10,882         |                                        ^~~~~~~~~~~~~~~
2024-07-11T15:29:10,886   moleculekit/fileformats/binpos/binpos.c:7973:7: note: ‘__pyx_v_i’ was declared here
2024-07-11T15:29:10,886    7973 |   int __pyx_v_i;
2024-07-11T15:29:10,886         |       ^~~~~~~~~
2024-07-11T15:29:13,109   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-07-11T15:29:13,407   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:29:13,543   building 'moleculekit.tmalign' extension
2024-07-11T15:29:13,544   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-11T15:29:13,544   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-11T15:29:13,546   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-07-11T15:29:43,047   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-o3rem83j/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-07-11T15:30:01,463   In file included from /usr/include/c++/10/vector:72,
2024-07-11T15:30:01,463                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-07-11T15:30:01,463   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-07-11T15:30:01,463   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-07-11T15:30:01,463     426 |       vector<_Tp, _Alloc>::
2024-07-11T15:30:01,463         |       ^~~~~~~~~~~~~~~~~~~
2024-07-11T15:30:02,043   In file included from /usr/include/c++/10/vector:67,
2024-07-11T15:30:02,043                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-07-11T15:30:02,043   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-07-11T15:30:02,043   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-11T15:30:02,043    1198 |    _M_realloc_insert(end(), __x);
2024-07-11T15:30:02,043         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T15:30:02,044   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-11T15:30:02,044    1198 |    _M_realloc_insert(end(), __x);
2024-07-11T15:30:02,044         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T15:30:02,044   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-11T15:30:02,045    1198 |    _M_realloc_insert(end(), __x);
2024-07-11T15:30:02,045         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-11T15:30:04,491   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-07-11T15:30:04,933   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-07-11T15:30:04,933   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.9.2'
2024-07-11T15:30:04,933   installing to build/bdist.linux-armv7l/wheel
2024-07-11T15:30:04,933   running install
2024-07-11T15:30:04,960   running install_lib
2024-07-11T15:30:04,967   creating build/bdist.linux-armv7l
2024-07-11T15:30:04,968   creating build/bdist.linux-armv7l/wheel
2024-07-11T15:30:04,970   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:04,972   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:04,994   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-11T15:30:04,995   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-11T15:30:05,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-11T15:30:05,026   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-11T15:30:05,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-11T15:30:05,046   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-11T15:30:05,049   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-07-11T15:30:05,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-07-11T15:30:05,052   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-11T15:30:05,054   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-07-11T15:30:05,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-07-11T15:30:05,061   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,067   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-11T15:30:05,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-11T15:30:05,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-11T15:30:05,073   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-11T15:30:05,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-11T15:30:05,077   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-11T15:30:05,078   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-11T15:30:05,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-11T15:30:05,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-11T15:30:05,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-11T15:30:05,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-11T15:30:05,102   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-07-11T15:30:05,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-07-11T15:30:05,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-11T15:30:05,108   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T15:30:05,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T15:30:05,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T15:30:05,132   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T15:30:05,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T15:30:05,137   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T15:30:05,138   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T15:30:05,140   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T15:30:05,142   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T15:30:05,145   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T15:30:05,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T15:30:05,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-11T15:30:05,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T15:30:05,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T15:30:05,156   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T15:30:05,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T15:30:05,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T15:30:05,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T15:30:05,164   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T15:30:05,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-11T15:30:05,169   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-11T15:30:05,198   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-11T15:30:05,199   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-11T15:30:05,202   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-11T15:30:05,205   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T15:30:05,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T15:30:05,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T15:30:05,211   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T15:30:05,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T15:30:05,216   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-11T15:30:05,219   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-07-11T15:30:05,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-07-11T15:30:05,223   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-11T15:30:05,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,274   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,276   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-11T15:30:05,277   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-11T15:30:05,302   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-11T15:30:05,304   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,308   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,310   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,311   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,314   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,316   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,318   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,328   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,331   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,334   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,336   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,338   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,340   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,342   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-11T15:30:05,345   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T15:30:05,346   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T15:30:05,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T15:30:05,350   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T15:30:05,378   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T15:30:05,401   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-11T15:30:05,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-11T15:30:05,405   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-11T15:30:05,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T15:30:05,453   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-11T15:30:05,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-11T15:30:05,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-11T15:30:05,477   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-11T15:30:05,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-11T15:30:05,503   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-11T15:30:05,506   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-11T15:30:05,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-11T15:30:05,528   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-11T15:30:05,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-11T15:30:05,551   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,593   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,594   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,597   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T15:30:05,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmolcdp.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T15:30:05,600   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T15:30:05,601   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T15:30:05,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T15:30:05,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T15:30:05,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T15:30:05,611   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T15:30:05,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T15:30:05,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T15:30:05,616   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T15:30:05,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-11T15:30:05,620   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-11T15:30:05,622   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,624   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,647   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-11T15:30:05,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-11T15:30:05,650   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-11T15:30:05,677   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,678   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,684   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:05,688   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-11T15:30:05,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-11T15:30:05,888   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-11T15:30:05,890   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-07-11T15:30:05,894   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,895   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,899   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,907   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,913   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,917   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,923   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,924   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,926   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,928   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,929   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,931   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,933   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,936   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,943   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,953   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,955   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,957   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,959   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,966   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,968   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,972   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,983   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,992   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,997   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:05,999   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,001   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,003   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,005   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,007   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,009   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,011   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,013   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,015   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,017   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,020   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,024   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,026   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,030   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,036   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,038   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,040   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,047   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,049   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,052   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,058   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,061   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,065   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,067   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,073   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,075   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,078   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,080   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,088   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,094   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,096   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,098   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,100   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,101   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,106   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,108   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,112   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,114   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,117   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,119   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,126   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,128   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,132   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,140   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,142   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,160   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,168   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,171   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,172   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,174   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,176   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,188   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,190   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,192   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,195   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,197   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,199   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,201   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,203   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,205   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,212   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,214   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-11T15:30:06,222   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-11T15:30:06,224   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-07-11T15:30:06,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-07-11T15:30:06,227   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-11T15:30:06,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-11T15:30:06,250   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-11T15:30:06,253   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-11T15:30:06,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-11T15:30:06,255   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-11T15:30:06,283   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-07-11T15:30:06,284   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T15:30:06,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T15:30:06,287   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T15:30:06,289   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T15:30:06,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T15:30:06,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/BinaryCifReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-11T15:30:06,297   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-07-11T15:30:06,299   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-11T15:30:06,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-11T15:30:06,301   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-11T15:30:06,304   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T15:30:06,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T15:30:06,308   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T15:30:06,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T15:30:06,311   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-11T15:30:06,314   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,319   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,323   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,326   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,328   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,330   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,332   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,335   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,340   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,342   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-11T15:30:06,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-11T15:30:06,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-11T15:30:06,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,349   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-11T15:30:06,352   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,356   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,370   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-11T15:30:06,371   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-11T15:30:06,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-11T15:30:06,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-11T15:30:06,380   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,400   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,405   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,409   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-11T15:30:06,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-11T15:30:06,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-11T15:30:06,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,437   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,491   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,515   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T15:30:06,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T15:30:06,519   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T15:30:06,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T15:30:06,523   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-11T15:30:06,526   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-11T15:30:06,566   running install_egg_info
2024-07-11T15:30:06,572   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.9.2-py3.9.egg-info
2024-07-11T15:30:06,584   running install_scripts
2024-07-11T15:30:06,630   creating build/bdist.linux-armv7l/wheel/moleculekit-1.9.2.dist-info/WHEEL
2024-07-11T15:30:06,633   creating '/tmp/pip-wheel-_qjgocv3/.tmp-zfej7uxu/moleculekit-1.9.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-07-11T15:30:06,636   adding 'moleculekit/__init__.py'
2024-07-11T15:30:06,637   adding 'moleculekit/_version.py'
2024-07-11T15:30:06,639   adding 'moleculekit/align.py'
2024-07-11T15:30:06,950   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:07,111   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:07,118   adding 'moleculekit/bondguesser.py'
2024-07-11T15:30:07,361   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:07,370   adding 'moleculekit/config.py'
2024-07-11T15:30:07,628   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:07,800   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:07,806   adding 'moleculekit/dihedral.py'
2024-07-11T15:30:07,808   adding 'moleculekit/distance.py'
2024-07-11T15:30:08,137   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:08,149   adding 'moleculekit/home.py'
2024-07-11T15:30:08,150   adding 'moleculekit/logging.ini'
2024-07-11T15:30:08,165   adding 'moleculekit/molecule.py'
2024-07-11T15:30:08,392   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:08,401   adding 'moleculekit/opm.py'
2024-07-11T15:30:08,403   adding 'moleculekit/periodictable.py'
2024-07-11T15:30:08,405   adding 'moleculekit/pymolgraphics.py'
2024-07-11T15:30:08,406   adding 'moleculekit/rcsb.py'
2024-07-11T15:30:08,407   adding 'moleculekit/rdkitintegration.py'
2024-07-11T15:30:08,422   adding 'moleculekit/readers.py'
2024-07-11T15:30:09,026   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:09,338   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:09,350   adding 'moleculekit/util.py'
2024-07-11T15:30:09,351   adding 'moleculekit/version.py'
2024-07-11T15:30:09,353   adding 'moleculekit/viewer.py'
2024-07-11T15:30:09,354   adding 'moleculekit/vmd_wrapper'
2024-07-11T15:30:09,356   adding 'moleculekit/vmdgraphics.py'
2024-07-11T15:30:09,358   adding 'moleculekit/vmdviewer.py'
2024-07-11T15:30:09,612   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:09,626   adding 'moleculekit/writers.py'
2024-07-11T15:30:09,894   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:09,904   adding 'moleculekit/atomselect/__init__.py'
2024-07-11T15:30:09,907   adding 'moleculekit/atomselect/analyze.py'
2024-07-11T15:30:09,910   adding 'moleculekit/atomselect/atomselect.py'
2024-07-11T15:30:09,912   adding 'moleculekit/atomselect/languageparser.py'
2024-07-11T15:30:10,017   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-07-11T15:30:10,028   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-07-11T15:30:10,121   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-07-11T15:30:10,131   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-07-11T15:30:10,221   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-07-11T15:30:10,230   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-07-11T15:30:10,335   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-07-11T15:30:10,346   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-07-11T15:30:10,347   adding 'moleculekit/fileformats/__init__.py'
2024-07-11T15:30:10,353   adding 'moleculekit/fileformats/netcdf.py'
2024-07-11T15:30:10,355   adding 'moleculekit/fileformats/utils.py'
2024-07-11T15:30:10,417   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-07-11T15:30:10,424   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-07-11T15:30:10,426   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-07-11T15:30:10,427   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-07-11T15:30:10,429   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-07-11T15:30:10,434   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-07-11T15:30:10,436   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-07-11T15:30:10,501   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-07-11T15:30:10,509   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-07-11T15:30:10,510   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-07-11T15:30:10,512   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-07-11T15:30:10,514   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-07-11T15:30:10,516   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-07-11T15:30:10,517   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-07-11T15:30:10,522   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-07-11T15:30:10,528   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-07-11T15:30:10,625   adding 'moleculekit/fileformats/xtc/trr.c'
2024-07-11T15:30:10,636   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-07-11T15:30:10,638   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-07-11T15:30:10,639   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-07-11T15:30:10,730   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-07-11T15:30:10,739   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-07-11T15:30:10,740   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-07-11T15:30:10,742   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-07-11T15:30:10,743   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-07-11T15:30:10,746   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-07-11T15:30:10,747   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-07-11T15:30:10,749   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-07-11T15:30:10,750   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-07-11T15:30:10,752   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-07-11T15:30:10,758   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-07-11T15:30:10,761   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-07-11T15:30:10,762   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-07-11T15:30:10,764   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-07-11T15:30:10,766   adding 'moleculekit/interactions/__init__.py'
2024-07-11T15:30:11,051   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:11,321   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:11,333   adding 'moleculekit/interactions/interactions.py'
2024-07-11T15:30:11,616   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:11,906   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-07-11T15:30:12,009   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-07-11T15:30:12,018   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-07-11T15:30:12,111   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-07-11T15:30:12,120   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-07-11T15:30:12,214   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-07-11T15:30:12,224   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-07-11T15:30:12,317   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-07-11T15:30:12,326   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-07-11T15:30:12,415   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-07-11T15:30:12,423   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-07-11T15:30:12,425   adding 'moleculekit/pdbx/__init__.py'
2024-07-11T15:30:12,428   adding 'moleculekit/pdbx/reader/BinaryCifReader.py'
2024-07-11T15:30:12,431   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-07-11T15:30:12,434   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-07-11T15:30:12,437   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-07-11T15:30:12,438   adding 'moleculekit/pdbx/reader/__init__.py'
2024-07-11T15:30:12,440   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-07-11T15:30:12,442   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-07-11T15:30:12,443   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-07-11T15:30:12,444   adding 'moleculekit/pdbx/tests/__init__.py'
2024-07-11T15:30:12,446   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-07-11T15:30:12,447   adding 'moleculekit/pdbx/writer/__init__.py'
2024-07-11T15:30:12,449   adding 'moleculekit/ply/__init__.py'
2024-07-11T15:30:12,453   adding 'moleculekit/ply/lex.py'
2024-07-11T15:30:12,465   adding 'moleculekit/ply/yacc.py'
2024-07-11T15:30:12,468   adding 'moleculekit/projections/__init__.py'
2024-07-11T15:30:12,470   adding 'moleculekit/projections/metriccoordinate.py'
2024-07-11T15:30:12,473   adding 'moleculekit/projections/metricdihedral.py'
2024-07-11T15:30:12,477   adding 'moleculekit/projections/metricdistance.py'
2024-07-11T15:30:12,479   adding 'moleculekit/projections/metricfluctuation.py'
2024-07-11T15:30:12,481   adding 'moleculekit/projections/metricgyration.py'
2024-07-11T15:30:12,485   adding 'moleculekit/projections/metricplumed2.py'
2024-07-11T15:30:12,487   adding 'moleculekit/projections/metricrmsd.py'
2024-07-11T15:30:12,489   adding 'moleculekit/projections/metricsasa.py'
2024-07-11T15:30:12,491   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-07-11T15:30:12,493   adding 'moleculekit/projections/metricshell.py'
2024-07-11T15:30:12,494   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-07-11T15:30:12,496   adding 'moleculekit/projections/metrictmscore.py'
2024-07-11T15:30:12,497   adding 'moleculekit/projections/projection.py'
2024-07-11T15:30:12,499   adding 'moleculekit/projections/util.py'
2024-07-11T15:30:12,501   adding 'moleculekit/share/ALA.cif'
2024-07-11T15:30:12,502   adding 'moleculekit/share/backbone.cif'
2024-07-11T15:30:13,805   adding 'moleculekit/share/opm_sequences.json'
2024-07-11T15:30:13,890   adding 'moleculekit/share/atomselect/atomselect.json'
2024-07-11T15:30:13,895   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-07-11T15:30:13,897   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-07-11T15:30:13,898   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-07-11T15:30:13,899   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-07-11T15:30:13,901   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-07-11T15:30:13,902   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-07-11T15:30:13,903   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-07-11T15:30:13,904   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-07-11T15:30:13,906   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-07-11T15:30:13,907   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-07-11T15:30:13,908   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-07-11T15:30:13,910   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-07-11T15:30:13,911   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-07-11T15:30:13,912   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-07-11T15:30:13,913   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-07-11T15:30:13,915   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-07-11T15:30:13,916   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-07-11T15:30:13,918   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-07-11T15:30:13,919   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-07-11T15:30:13,920   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-07-11T15:30:13,922   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-07-11T15:30:13,924   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-07-11T15:30:13,925   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-07-11T15:30:13,927   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-07-11T15:30:13,929   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-07-11T15:30:13,930   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-07-11T15:30:13,932   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-07-11T15:30:13,933   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-07-11T15:30:13,935   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-07-11T15:30:13,936   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-07-11T15:30:13,938   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-07-11T15:30:13,939   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-07-11T15:30:13,941   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-07-11T15:30:13,943   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-07-11T15:30:13,944   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-07-11T15:30:13,946   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-07-11T15:30:13,947   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-07-11T15:30:13,949   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-07-11T15:30:13,951   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-07-11T15:30:13,952   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-07-11T15:30:13,954   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-07-11T15:30:13,956   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-07-11T15:30:13,957   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-07-11T15:30:13,959   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-07-11T15:30:13,960   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-07-11T15:30:13,962   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-07-11T15:30:13,963   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-07-11T15:30:13,965   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-07-11T15:30:13,967   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-07-11T15:30:13,968   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-07-11T15:30:13,970   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-07-11T15:30:13,971   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-07-11T15:30:13,973   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-07-11T15:30:13,975   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-07-11T15:30:13,976   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-07-11T15:30:13,978   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-07-11T15:30:13,979   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-07-11T15:30:13,981   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-07-11T15:30:13,983   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-07-11T15:30:13,984   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-07-11T15:30:13,986   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-07-11T15:30:13,987   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-07-11T15:30:13,989   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-07-11T15:30:13,990   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-07-11T15:30:13,992   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-07-11T15:30:13,993   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-07-11T15:30:13,995   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-07-11T15:30:13,997   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-07-11T15:30:13,998   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-07-11T15:30:14,000   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-07-11T15:30:14,001   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-07-11T15:30:14,002   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-07-11T15:30:14,004   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-07-11T15:30:14,006   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-07-11T15:30:14,007   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-07-11T15:30:14,009   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-07-11T15:30:14,010   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-07-11T15:30:14,012   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-07-11T15:30:14,013   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-07-11T15:30:14,015   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-07-11T15:30:14,017   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-07-11T15:30:14,018   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-07-11T15:30:14,020   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-07-11T15:30:14,021   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-07-11T15:30:14,023   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-07-11T15:30:14,025   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-07-11T15:30:14,026   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-07-11T15:30:14,028   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-07-11T15:30:14,029   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-07-11T15:30:14,031   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-07-11T15:30:14,033   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-07-11T15:30:14,034   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-07-11T15:30:14,036   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-07-11T15:30:14,037   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-07-11T15:30:14,039   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-07-11T15:30:14,041   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-07-11T15:30:14,042   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-07-11T15:30:14,044   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-07-11T15:30:14,045   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-07-11T15:30:14,047   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-07-11T15:30:14,049   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-07-11T15:30:14,050   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-07-11T15:30:14,052   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-07-11T15:30:14,054   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-07-11T15:30:14,055   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-07-11T15:30:14,057   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-07-11T15:30:14,058   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-07-11T15:30:14,060   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-07-11T15:30:14,062   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-07-11T15:30:14,063   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-07-11T15:30:14,065   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-07-11T15:30:14,067   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-07-11T15:30:14,068   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-07-11T15:30:14,070   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-07-11T15:30:14,071   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-07-11T15:30:14,073   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-07-11T15:30:14,074   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-07-11T15:30:14,076   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-07-11T15:30:14,078   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-07-11T15:30:14,079   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-07-11T15:30:14,081   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-07-11T15:30:14,082   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-07-11T15:30:14,084   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-07-11T15:30:14,085   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-07-11T15:30:14,087   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-07-11T15:30:14,089   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-07-11T15:30:14,090   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-07-11T15:30:14,092   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-07-11T15:30:14,094   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-07-11T15:30:14,095   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-07-11T15:30:14,097   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-07-11T15:30:14,098   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-07-11T15:30:14,100   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-07-11T15:30:14,101   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-07-11T15:30:14,103   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-07-11T15:30:14,105   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-07-11T15:30:14,106   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-07-11T15:30:14,108   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-07-11T15:30:14,109   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-07-11T15:30:14,111   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-07-11T15:30:14,112   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-07-11T15:30:14,114   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-07-11T15:30:14,115   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-07-11T15:30:14,117   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-07-11T15:30:14,118   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-07-11T15:30:14,120   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-07-11T15:30:14,122   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-07-11T15:30:14,123   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-07-11T15:30:14,125   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-07-11T15:30:14,126   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-07-11T15:30:14,128   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-07-11T15:30:14,129   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-07-11T15:30:14,131   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-07-11T15:30:14,133   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-07-11T15:30:14,135   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-07-11T15:30:14,136   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-07-11T15:30:14,138   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-07-11T15:30:14,139   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-07-11T15:30:14,141   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-07-11T15:30:14,142   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-07-11T15:30:14,144   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-07-11T15:30:14,145   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-07-11T15:30:14,147   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-07-11T15:30:14,149   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-07-11T15:30:14,150   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-07-11T15:30:14,152   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-07-11T15:30:14,153   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-07-11T15:30:14,155   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-07-11T15:30:14,157   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-07-11T15:30:14,158   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-07-11T15:30:14,160   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-07-11T15:30:14,161   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-07-11T15:30:14,163   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-07-11T15:30:14,165   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-07-11T15:30:14,166   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-07-11T15:30:14,168   adding 'moleculekit/smallmol/__init__.py'
2024-07-11T15:30:14,174   adding 'moleculekit/smallmol/smallmol.py'
2024-07-11T15:30:14,176   adding 'moleculekit/smallmol/smallmolcdp.py'
2024-07-11T15:30:14,179   adding 'moleculekit/smallmol/smallmollib.py'
2024-07-11T15:30:14,181   adding 'moleculekit/smallmol/test_smallmol.py'
2024-07-11T15:30:14,183   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-07-11T15:30:14,186   adding 'moleculekit/smallmol/util.py'
2024-07-11T15:30:14,188   adding 'moleculekit/smallmol/tools/__init__.py'
2024-07-11T15:30:14,190   adding 'moleculekit/smallmol/tools/clustering.py'
2024-07-11T15:30:14,192   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-07-11T15:30:14,194   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-07-11T15:30:14,285   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-07-11T15:30:14,295   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-07-11T15:30:14,296   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-07-11T15:30:14,298   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-07-11T15:30:14,316   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-07-11T15:30:14,319   adding 'moleculekit/tools/__init__.py'
2024-07-11T15:30:14,322   adding 'moleculekit/tools/atomtyper.py'
2024-07-11T15:30:14,324   adding 'moleculekit/tools/autosegment.py'
2024-07-11T15:30:14,327   adding 'moleculekit/tools/crystalpacking.py'
2024-07-11T15:30:14,331   adding 'moleculekit/tools/detect.py'
2024-07-11T15:30:14,333   adding 'moleculekit/tools/docking.py'
2024-07-11T15:30:14,335   adding 'moleculekit/tools/graphalignment.py'
2024-07-11T15:30:14,337   adding 'moleculekit/tools/hhblitsprofile.py'
2024-07-11T15:30:14,339   adding 'moleculekit/tools/modelling.py'
2024-07-11T15:30:14,341   adding 'moleculekit/tools/moleculechecks.py'
2024-07-11T15:30:14,348   adding 'moleculekit/tools/preparation.py'
2024-07-11T15:30:14,351   adding 'moleculekit/tools/preparation_customres.py'
2024-07-11T15:30:14,353   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-07-11T15:30:14,356   adding 'moleculekit/tools/voxeldescriptors.py'
2024-07-11T15:30:14,359   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-07-11T15:30:14,360   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-07-11T15:30:14,454   adding 'moleculekit/wrapping/wrapping.cpp'
2024-07-11T15:30:14,463   adding 'moleculekit/wrapping/wrapping.pyx'
2024-07-11T15:30:14,466   adding 'moleculekit-1.9.2.dist-info/LICENSE'
2024-07-11T15:30:14,468   adding 'moleculekit-1.9.2.dist-info/METADATA'
2024-07-11T15:30:14,469   adding 'moleculekit-1.9.2.dist-info/WHEEL'
2024-07-11T15:30:14,470   adding 'moleculekit-1.9.2.dist-info/top_level.txt'
2024-07-11T15:30:14,476   adding 'moleculekit-1.9.2.dist-info/RECORD'
2024-07-11T15:30:14,641   removing build/bdist.linux-armv7l/wheel
2024-07-11T15:30:14,924   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-07-11T15:30:15,247   Created wheel for moleculekit: filename=moleculekit-1.9.2-cp39-cp39-linux_armv7l.whl size=14933078 sha256=e5f605262f03ab78ddfad81b85f6a8d5607bc553bf969bd724a5739cab3389fe
2024-07-11T15:30:15,248   Stored in directory: /tmp/pip-ephem-wheel-cache-etng8754/wheels/1f/e2/c1/21c6b8ca09f9e8a727e7ca1c0a45ecebecbb0efe278a81ae4d
2024-07-11T15:30:15,278 Successfully built moleculekit
2024-07-11T15:30:15,668 Removed build tracker: '/tmp/pip-build-tracker-3t8rbhs_'