2024-07-12T08:13:44,724 Created temporary directory: /tmp/pip-build-tracker-pe96pgxy 2024-07-12T08:13:44,726 Initialized build tracking at /tmp/pip-build-tracker-pe96pgxy 2024-07-12T08:13:44,726 Created build tracker: /tmp/pip-build-tracker-pe96pgxy 2024-07-12T08:13:44,726 Entered build tracker: /tmp/pip-build-tracker-pe96pgxy 2024-07-12T08:13:44,727 Created temporary directory: /tmp/pip-wheel-t7d91s53 2024-07-12T08:13:44,731 Created temporary directory: /tmp/pip-ephem-wheel-cache-y1ys1r85 2024-07-12T08:13:44,761 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-12T08:13:44,764 2 location(s) to search for versions of singlem: 2024-07-12T08:13:44,764 * https://pypi.org/simple/singlem/ 2024-07-12T08:13:44,764 * https://www.piwheels.org/simple/singlem/ 2024-07-12T08:13:44,765 Fetching project page and analyzing links: https://pypi.org/simple/singlem/ 2024-07-12T08:13:44,766 Getting page https://pypi.org/simple/singlem/ 2024-07-12T08:13:44,767 Found index url https://pypi.org/simple/ 2024-07-12T08:13:44,821 Fetched page https://pypi.org/simple/singlem/ as application/vnd.pypi.simple.v1+json 2024-07-12T08:13:44,827 Found link https://files.pythonhosted.org/packages/35/55/72780c79146b2ccd465016b28eccbe6c326493f5a8db3c489eda3382fbb1/singlem-0.7.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.7.1 2024-07-12T08:13:44,828 Found link https://files.pythonhosted.org/packages/17/8b/f553c11bbb3e950516589aa26299b85098d0ac78405a4ebacefa023de306/singlem-0.8.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.0 2024-07-12T08:13:44,828 Found link https://files.pythonhosted.org/packages/b6/f9/9538a096be3c2cc820642d87a626e45ce03f55716175025605b2d33f5e39/singlem-0.8.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.1 2024-07-12T08:13:44,828 Found link https://files.pythonhosted.org/packages/ca/c5/95b117cf1ebc381cf922280dd0aaaf9967777c903c8a079330728a278709/singlem-0.8.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.2 2024-07-12T08:13:44,828 Found link https://files.pythonhosted.org/packages/9d/8d/156892825f51ea215336c9171ba98ddd3003bc72538232c3e5cc20840b9c/singlem-0.9.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.9.0 2024-07-12T08:13:44,829 Found link https://files.pythonhosted.org/packages/9c/7c/bdc416d19613e03f631006b9e63355480dfd5438007172002652014dccd5/singlem-0.11.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.11.0 2024-07-12T08:13:44,829 Found link https://files.pythonhosted.org/packages/a3/67/58f5f073fa50c02cf0ccbade3bc0823976f29d12545e48a0b2f2c45288f9/singlem-0.12.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.0 2024-07-12T08:13:44,829 Found link https://files.pythonhosted.org/packages/68/8c/8bd9277ff17836d14658186469cb05376569f052f90cb3a82a449ac7eea4/singlem-0.12.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.1 2024-07-12T08:13:44,829 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/17/71/31b5c5d9541c9104d713a0eced18a124a696ee81f9f9dddd578e02b4380f/singlem-0.13.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-12T08:13:44,830 Found link https://files.pythonhosted.org/packages/db/0b/e73e8b154bbca8f6fb81337791f7420b54b128f3682f9b394843c6559bbc/singlem-0.13.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.0 2024-07-12T08:13:44,830 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/9c/c2/59c1904feff0407c2ca5f1ec0ae098f42415c722f36cf01836c400a0e6ec/singlem-0.13.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-12T08:13:44,830 Found link https://files.pythonhosted.org/packages/54/6a/d718c26f15b38a4b0e999f8246dcfcd5b7237c2298009031ebd18d7e2a7d/singlem-0.13.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.1 2024-07-12T08:13:44,830 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/aa/67/a4cf9b0c9f573201e887a91a98251ad31dace8433b735c7f698a9e94ebc0/singlem-0.13.2-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-12T08:13:44,831 Found link https://files.pythonhosted.org/packages/2a/bb/75b1c30a8c30835d277ce6cacbd827fde3f094648bf6c5d4fff5d922b2f7/singlem-0.13.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.2 2024-07-12T08:13:44,831 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/50/5a/f72ef558f096a3c9706e30c3bd0dab98c42539b6d507b8e8554c4433edda/singlem-0.14.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-12T08:13:44,831 Found link https://files.pythonhosted.org/packages/7c/7b/ca7227ef1d9151143a723d74b26bca4d18c6d60870348b4a4aee539ad343/singlem-0.14.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.14.0 2024-07-12T08:13:44,831 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/4c/a3/98cd7cfaef694f36655d9c8d193774e7d94fd9e0f6fc9d92f402fc88b898/singlem-0.15.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-12T08:13:44,832 Found link https://files.pythonhosted.org/packages/b1/7c/e32b071b5a3f79fb69c39f9a172a179a3c5071e5344fc52387b561fbf38e/singlem-0.15.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.0 2024-07-12T08:13:44,832 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/fc/16/ea6f071e069d735d896eec440e65fdeaf88d69123893b1e7198bde08ba5e/singlem-0.15.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-12T08:13:44,832 Found link https://files.pythonhosted.org/packages/ed/e7/34484f28ce4bb10dc929264cea43d5683c213858b91520243c197eba77b0/singlem-0.15.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.1 2024-07-12T08:13:44,832 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/22/91/db397eac675c00346bf5cd791b7bf0e7ce239b22ae55f255af6f35e34d7e/singlem-0.16.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-12T08:13:44,833 Found link https://files.pythonhosted.org/packages/04/5a/0eb1e0bcf0d3fdeb87d543d86ef1c5cba4e5dedb4165a06f21b84e80f744/singlem-0.16.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.16.0 2024-07-12T08:13:44,833 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/f7/8b/22924e7ea1fdafa961cd2534919ae78fb024516d61e5c3f988bd1a92cd3c/singlem-0.17.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-12T08:13:44,833 Found link https://files.pythonhosted.org/packages/a6/b9/168d5463ab41e4f0511b7fe868b80d019dcedb5c14b3b04eea91b39ab5e5/singlem-0.17.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.17.0 2024-07-12T08:13:44,833 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/f2/ff/e5fa9cd9e05e0d066f173a6d1f89a54fd749a192f1107bd24807abc20290/singlem-0.18.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-12T08:13:44,834 Found link https://files.pythonhosted.org/packages/47/dd/5bc943ee3849e5e8d5be202fe563beb4e76604310f136c87a6524ee2d6c4/singlem-0.18.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.18.0 2024-07-12T08:13:44,834 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/db/cf/78616e32c3df6f385cc3db921b1fb2099fee3cd03490fbed44cd3cde10f0/singlem-0.18.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-12T08:13:44,834 Found link https://files.pythonhosted.org/packages/6c/99/ff18fa38032984bc8dd09441ce43c0b1277ef5869ea2b836635d27023e19/singlem-0.18.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.18.1 2024-07-12T08:13:44,834 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/84/1a/8a17c9c2a441e8ec94ac79f90d63cb2dfd994594fc9b0ac177dd4d511a78/singlem-1.0.0b8-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-12T08:13:44,834 Found link https://files.pythonhosted.org/packages/3e/08/4fe229183f8c2c33255bcf7148fa79b6dd1d65453bcb99d37f82600441b7/singlem-1.0.0b8.tar.gz (from https://pypi.org/simple/singlem/), version: 1.0.0b8 2024-07-12T08:13:44,835 Fetching project page and analyzing links: https://www.piwheels.org/simple/singlem/ 2024-07-12T08:13:44,835 Getting page https://www.piwheels.org/simple/singlem/ 2024-07-12T08:13:44,836 Found index url https://www.piwheels.org/simple/ 2024-07-12T08:13:44,902 Fetched page https://www.piwheels.org/simple/singlem/ as text/html 2024-07-12T08:13:44,906 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-1.0.0b8-py3-none-any.whl#sha256=3365626c8cb55d23a5197a42572fbbb259c9dbc65b14a97f8e800c940b9a362c (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,907 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.18.0-py3-none-any.whl#sha256=1242840cbfb61ba6c0a428bc2b6d5f4023200bd886a871bc4f3071e9265c60a2 (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,907 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.17.0-py3-none-any.whl#sha256=b12f157af3e578d4a2bf5ab66f5f54ee0e66e9c9c611e08eace7e36119563e2a (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,907 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.16.0-py3-none-any.whl#sha256=899b9e72e567babdc8e689ef6c2676d7d7c58fecb2ebed82d413c75d17c4e410 (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,907 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.15.1-py3-none-any.whl#sha256=4cc1d3a1e437383de7a99970d08e9abdd2633314cf3a06760f8822d81533f512 (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,908 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.15.0-py3-none-any.whl#sha256=51ac005a1c09c7004e5639c3045e1313d39f7d8d4d77c417b63c8f4e243cec51 (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,908 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.14.0-py3-none-any.whl#sha256=184ece47180c793b14866826b9436d33ec0fd1d3c5e2cf5bf0c7625520509208 (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,908 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.2-py3-none-any.whl#sha256=0b410717882ab1cf12894ff799a530aaacb1eb2b69ad778355384c3ec5316bbb (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,908 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.1-py3-none-any.whl#sha256=950f2fc4d7e4eee5e75cc2bb2a5b7119aaa39590ee8c5fe9086ae0425a268fa3 (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,908 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.0-py3-none-any.whl#sha256=5f5cb853b85d738f19c8d06c769e4c1f5ae107ae7a2489c75185a7eeb3f0a9e6 (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,909 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.12.0-py3-none-any.whl#sha256=044eb417530be9293ed3640ebb56b5a2f8cfb34d2f8dab45e96556494cf0c2d5 (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,909 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.11.0-py3-none-any.whl#sha256=83c2697c65261566314896fee814840e77012597bb29405182cf4a3063711651 (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,909 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.9.0-py3-none-any.whl#sha256=bfb2dc9633dea53293af0244d04cb1bd0e981c01cfe3dce8cc5b7cd4cf9d7eb9 (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,909 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.8.2-py3-none-any.whl#sha256=9f7f2cf19f5d8b565a8641eed3e9925ee9112647c245999a6f685af7bfa1c001 (from https://www.piwheels.org/simple/singlem/) 2024-07-12T08:13:44,909 Skipping link: not a file: https://www.piwheels.org/simple/singlem/ 2024-07-12T08:13:44,910 Skipping link: not a file: https://pypi.org/simple/singlem/ 2024-07-12T08:13:44,929 Given no hashes to check 1 links for project 'singlem': discarding no candidates 2024-07-12T08:13:44,946 Collecting singlem==0.18.1 2024-07-12T08:13:44,948 Created temporary directory: /tmp/pip-unpack-9p3_bfxp 2024-07-12T08:13:44,992 Downloading singlem-0.18.1.tar.gz (183 kB) 2024-07-12T08:13:45,196 Added singlem==0.18.1 from https://files.pythonhosted.org/packages/6c/99/ff18fa38032984bc8dd09441ce43c0b1277ef5869ea2b836635d27023e19/singlem-0.18.1.tar.gz to build tracker '/tmp/pip-build-tracker-pe96pgxy' 2024-07-12T08:13:45,199 Running setup.py (path:/tmp/pip-wheel-t7d91s53/singlem_ea3ea2c69bd1456dbd4d4dea695a4fe0/setup.py) egg_info for package singlem 2024-07-12T08:13:45,199 Created temporary directory: /tmp/pip-pip-egg-info-p11w7kf1 2024-07-12T08:13:45,200 Preparing metadata (setup.py): started 2024-07-12T08:13:45,201 Running command python setup.py egg_info 2024-07-12T08:13:46,378 running egg_info 2024-07-12T08:13:46,379 creating /tmp/pip-pip-egg-info-p11w7kf1/singlem.egg-info 2024-07-12T08:13:46,405 writing /tmp/pip-pip-egg-info-p11w7kf1/singlem.egg-info/PKG-INFO 2024-07-12T08:13:46,409 writing dependency_links to /tmp/pip-pip-egg-info-p11w7kf1/singlem.egg-info/dependency_links.txt 2024-07-12T08:13:46,411 writing requirements to /tmp/pip-pip-egg-info-p11w7kf1/singlem.egg-info/requires.txt 2024-07-12T08:13:46,412 writing top-level names to /tmp/pip-pip-egg-info-p11w7kf1/singlem.egg-info/top_level.txt 2024-07-12T08:13:46,414 writing manifest file '/tmp/pip-pip-egg-info-p11w7kf1/singlem.egg-info/SOURCES.txt' 2024-07-12T08:13:46,522 reading manifest file '/tmp/pip-pip-egg-info-p11w7kf1/singlem.egg-info/SOURCES.txt' 2024-07-12T08:13:46,524 reading manifest template 'MANIFEST.in' 2024-07-12T08:13:46,525 warning: no files found matching 'LICENSE' 2024-07-12T08:13:46,526 warning: no previously-included files matching '*' found under directory 'test' 2024-07-12T08:13:46,526 adding license file 'LICENCE.txt' 2024-07-12T08:13:46,530 writing manifest file '/tmp/pip-pip-egg-info-p11w7kf1/singlem.egg-info/SOURCES.txt' 2024-07-12T08:13:46,626 Preparing metadata (setup.py): finished with status 'done' 2024-07-12T08:13:46,631 Source in /tmp/pip-wheel-t7d91s53/singlem_ea3ea2c69bd1456dbd4d4dea695a4fe0 has version 0.18.1, which satisfies requirement singlem==0.18.1 from https://files.pythonhosted.org/packages/6c/99/ff18fa38032984bc8dd09441ce43c0b1277ef5869ea2b836635d27023e19/singlem-0.18.1.tar.gz 2024-07-12T08:13:46,632 Removed singlem==0.18.1 from https://files.pythonhosted.org/packages/6c/99/ff18fa38032984bc8dd09441ce43c0b1277ef5869ea2b836635d27023e19/singlem-0.18.1.tar.gz from build tracker '/tmp/pip-build-tracker-pe96pgxy' 2024-07-12T08:13:46,637 Created temporary directory: /tmp/pip-unpack-vfqopjws 2024-07-12T08:13:46,638 Created temporary directory: /tmp/pip-unpack-lty75i4_ 2024-07-12T08:13:46,655 Building wheels for collected packages: singlem 2024-07-12T08:13:46,659 Created temporary directory: /tmp/pip-wheel-wbec0yib 2024-07-12T08:13:46,659 Building wheel for singlem (setup.py): started 2024-07-12T08:13:46,660 Destination directory: /tmp/pip-wheel-wbec0yib 2024-07-12T08:13:46,660 Running command python setup.py bdist_wheel 2024-07-12T08:13:47,734 running bdist_wheel 2024-07-12T08:13:47,827 running build 2024-07-12T08:13:47,827 running build_py 2024-07-12T08:13:47,855 creating build 2024-07-12T08:13:47,855 creating build/lib 2024-07-12T08:13:47,856 creating build/lib/singlem 2024-07-12T08:13:47,857 copying singlem/known_otu_table.py -> build/lib/singlem 2024-07-12T08:13:47,859 copying singlem/placement_parser.py -> build/lib/singlem 2024-07-12T08:13:47,861 copying singlem/diamond_spkg_searcher.py -> build/lib/singlem 2024-07-12T08:13:47,863 copying singlem/genome_fasta_mux.py -> build/lib/singlem 2024-07-12T08:13:47,865 copying singlem/__init__.py -> build/lib/singlem 2024-07-12T08:13:47,866 copying singlem/clusterer.py -> build/lib/singlem 2024-07-12T08:13:47,869 copying singlem/taxonomy.py -> build/lib/singlem 2024-07-12T08:13:47,870 copying singlem/sequence_classes.py -> build/lib/singlem 2024-07-12T08:13:47,872 copying singlem/query_formatters.py -> build/lib/singlem 2024-07-12T08:13:47,874 copying singlem/archive_otu_table.py -> build/lib/singlem 2024-07-12T08:13:47,876 copying singlem/appraiser.py -> build/lib/singlem 2024-07-12T08:13:47,878 copying singlem/dereplicator.py -> build/lib/singlem 2024-07-12T08:13:47,880 copying singlem/genome_size.py -> build/lib/singlem 2024-07-12T08:13:47,881 copying singlem/ordered_set.py -> build/lib/singlem 2024-07-12T08:13:47,883 copying singlem/supplement.py -> build/lib/singlem 2024-07-12T08:13:47,886 copying singlem/singlem.py -> build/lib/singlem 2024-07-12T08:13:47,887 copying singlem/summariser.py -> build/lib/singlem 2024-07-12T08:13:47,890 copying singlem/otu_table_entry.py -> build/lib/singlem 2024-07-12T08:13:47,891 copying singlem/appraisal_result.py -> build/lib/singlem 2024-07-12T08:13:47,894 copying singlem/renew.py -> build/lib/singlem 2024-07-12T08:13:47,896 copying singlem/querier.py -> build/lib/singlem 2024-07-12T08:13:47,898 copying singlem/checkm2.py -> build/lib/singlem 2024-07-12T08:13:47,900 copying singlem/kingfisher_sra.py -> build/lib/singlem 2024-07-12T08:13:47,902 copying singlem/package_creator.py -> build/lib/singlem 2024-07-12T08:13:47,904 copying singlem/sequence_database.py -> build/lib/singlem 2024-07-12T08:13:47,907 copying singlem/metapackage.py -> build/lib/singlem 2024-07-12T08:13:47,909 copying singlem/sequence_extractor.py -> build/lib/singlem 2024-07-12T08:13:47,911 copying singlem/taxonomy_bihash.py -> build/lib/singlem 2024-07-12T08:13:47,912 copying singlem/version.py -> build/lib/singlem 2024-07-12T08:13:47,914 copying singlem/strain_summariser.py -> build/lib/singlem 2024-07-12T08:13:47,916 copying singlem/otu_table_collection.py -> build/lib/singlem 2024-07-12T08:13:47,918 copying singlem/rarefier.py -> build/lib/singlem 2024-07-12T08:13:47,920 copying singlem/read_fraction.py -> build/lib/singlem 2024-07-12T08:13:47,922 copying singlem/trim_package_hmms.py -> build/lib/singlem 2024-07-12T08:13:47,924 copying singlem/pipe_sequence_extractor.py -> build/lib/singlem 2024-07-12T08:13:47,926 copying singlem/metagenome_otu_finder.py -> build/lib/singlem 2024-07-12T08:13:47,929 copying singlem/otu_table.py -> build/lib/singlem 2024-07-12T08:13:47,930 copying singlem/singlem_database_models.py -> build/lib/singlem 2024-07-12T08:13:47,932 copying singlem/run_via_os_system.py -> build/lib/singlem 2024-07-12T08:13:47,934 copying singlem/chainsaw.py -> build/lib/singlem 2024-07-12T08:13:47,936 copying singlem/pipe.py -> build/lib/singlem 2024-07-12T08:13:47,939 copying singlem/pipe_taxonomy_assigner_by_query.py -> build/lib/singlem 2024-07-12T08:13:47,942 copying singlem/condense.py -> build/lib/singlem 2024-07-12T08:13:47,945 copying singlem/regenerator.py -> build/lib/singlem 2024-07-12T08:13:47,947 copying singlem/metapackage_read_name_store.py -> build/lib/singlem 2024-07-12T08:13:47,949 copying singlem/diamond_parser.py -> build/lib/singlem 2024-07-12T08:13:47,950 copying singlem/hmm_logo.py -> build/lib/singlem 2024-07-12T08:13:47,952 copying singlem/graftm_result.py -> build/lib/singlem 2024-07-12T08:13:47,954 copying singlem/streaming_hmm_search_result.py -> build/lib/singlem 2024-07-12T08:13:47,955 copying singlem/singlem_package.py -> build/lib/singlem 2024-07-12T08:13:47,958 copying singlem/orf_length_checker.py -> build/lib/singlem 2024-07-12T08:13:47,960 creating build/lib/singlem/biolib_lite 2024-07-12T08:13:47,961 copying singlem/biolib_lite/exceptions.py -> build/lib/singlem/biolib_lite 2024-07-12T08:13:47,963 copying singlem/biolib_lite/seq_io.py -> build/lib/singlem/biolib_lite 2024-07-12T08:13:47,965 copying singlem/biolib_lite/__init__.py -> build/lib/singlem/biolib_lite 2024-07-12T08:13:47,966 copying singlem/biolib_lite/taxonomy.py -> build/lib/singlem/biolib_lite 2024-07-12T08:13:47,969 copying singlem/biolib_lite/custom_help_formatter.py -> build/lib/singlem/biolib_lite 2024-07-12T08:13:47,971 copying singlem/biolib_lite/parallel.py -> build/lib/singlem/biolib_lite 2024-07-12T08:13:47,973 copying singlem/biolib_lite/prodigal_biolib.py -> build/lib/singlem/biolib_lite 2024-07-12T08:13:47,975 copying singlem/biolib_lite/logger.py -> build/lib/singlem/biolib_lite 2024-07-12T08:13:47,977 copying singlem/biolib_lite/execute.py -> build/lib/singlem/biolib_lite 2024-07-12T08:13:47,979 copying singlem/biolib_lite/newick.py -> build/lib/singlem/biolib_lite 2024-07-12T08:13:47,981 copying singlem/biolib_lite/common.py -> build/lib/singlem/biolib_lite 2024-07-12T08:13:47,983 running egg_info 2024-07-12T08:13:48,038 writing singlem.egg-info/PKG-INFO 2024-07-12T08:13:48,041 writing dependency_links to singlem.egg-info/dependency_links.txt 2024-07-12T08:13:48,043 writing requirements to singlem.egg-info/requires.txt 2024-07-12T08:13:48,044 writing top-level names to singlem.egg-info/top_level.txt 2024-07-12T08:13:48,075 reading manifest file 'singlem.egg-info/SOURCES.txt' 2024-07-12T08:13:48,079 reading manifest template 'MANIFEST.in' 2024-07-12T08:13:48,079 warning: no files found matching 'LICENSE' 2024-07-12T08:13:48,080 warning: no previously-included files matching '*' found under directory 'test' 2024-07-12T08:13:48,081 adding license file 'LICENCE.txt' 2024-07-12T08:13:48,085 writing manifest file 'singlem.egg-info/SOURCES.txt' 2024-07-12T08:13:48,093 running build_scripts 2024-07-12T08:13:48,093 creating build/scripts-3.9 2024-07-12T08:13:48,094 copying and adjusting bin/singlem -> build/scripts-3.9 2024-07-12T08:13:48,100 changing mode of build/scripts-3.9/singlem from 644 to 755 2024-07-12T08:13:48,124 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-07-12T08:13:48,124 !! 2024-07-12T08:13:48,125 ******************************************************************************** 2024-07-12T08:13:48,125 Please avoid running ``setup.py`` directly. 2024-07-12T08:13:48,125 Instead, use pypa/build, pypa/installer or other 2024-07-12T08:13:48,125 standards-based tools. 2024-07-12T08:13:48,125 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-07-12T08:13:48,126 ******************************************************************************** 2024-07-12T08:13:48,126 !! 2024-07-12T08:13:48,126 self.initialize_options() 2024-07-12T08:13:48,147 installing to build/bdist.linux-armv7l/wheel 2024-07-12T08:13:48,148 running install 2024-07-12T08:13:48,173 running install_lib 2024-07-12T08:13:48,197 creating build/bdist.linux-armv7l 2024-07-12T08:13:48,198 creating build/bdist.linux-armv7l/wheel 2024-07-12T08:13:48,200 creating build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,201 copying build/lib/singlem/known_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,203 copying build/lib/singlem/placement_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,205 copying build/lib/singlem/diamond_spkg_searcher.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,207 copying build/lib/singlem/genome_fasta_mux.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,209 copying build/lib/singlem/__init__.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,211 copying build/lib/singlem/clusterer.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,213 copying build/lib/singlem/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,215 copying build/lib/singlem/sequence_classes.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,217 copying build/lib/singlem/query_formatters.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,219 copying build/lib/singlem/archive_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,223 copying build/lib/singlem/appraiser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,225 copying build/lib/singlem/dereplicator.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,227 copying build/lib/singlem/genome_size.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,229 copying build/lib/singlem/ordered_set.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,230 copying build/lib/singlem/supplement.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,234 copying build/lib/singlem/singlem.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,235 copying build/lib/singlem/summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,238 copying build/lib/singlem/otu_table_entry.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,240 copying build/lib/singlem/appraisal_result.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,243 copying build/lib/singlem/renew.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,245 copying build/lib/singlem/querier.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,248 copying build/lib/singlem/checkm2.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,249 copying build/lib/singlem/kingfisher_sra.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,251 copying build/lib/singlem/package_creator.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,254 copying build/lib/singlem/sequence_database.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,257 copying build/lib/singlem/metapackage.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,259 copying build/lib/singlem/sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,261 copying build/lib/singlem/taxonomy_bihash.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,263 copying build/lib/singlem/version.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,264 copying build/lib/singlem/strain_summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,267 copying build/lib/singlem/otu_table_collection.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,269 copying build/lib/singlem/rarefier.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,271 copying build/lib/singlem/read_fraction.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,273 copying build/lib/singlem/trim_package_hmms.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,275 copying build/lib/singlem/pipe_sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,278 copying build/lib/singlem/metagenome_otu_finder.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,280 copying build/lib/singlem/otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,282 copying build/lib/singlem/singlem_database_models.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,284 copying build/lib/singlem/run_via_os_system.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,287 creating build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-12T08:13:48,288 copying build/lib/singlem/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-12T08:13:48,290 copying build/lib/singlem/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-12T08:13:48,292 copying build/lib/singlem/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-12T08:13:48,294 copying build/lib/singlem/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-12T08:13:48,297 copying build/lib/singlem/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-12T08:13:48,299 copying build/lib/singlem/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-12T08:13:48,301 copying build/lib/singlem/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-12T08:13:48,304 copying build/lib/singlem/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-12T08:13:48,306 copying build/lib/singlem/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-12T08:13:48,308 copying build/lib/singlem/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-12T08:13:48,310 copying build/lib/singlem/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-12T08:13:48,312 copying build/lib/singlem/chainsaw.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,314 copying build/lib/singlem/pipe.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,319 copying build/lib/singlem/pipe_taxonomy_assigner_by_query.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,322 copying build/lib/singlem/condense.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,325 copying build/lib/singlem/regenerator.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,328 copying build/lib/singlem/metapackage_read_name_store.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,330 copying build/lib/singlem/diamond_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,331 copying build/lib/singlem/hmm_logo.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,333 copying build/lib/singlem/graftm_result.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,335 copying build/lib/singlem/streaming_hmm_search_result.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,337 copying build/lib/singlem/singlem_package.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,340 copying build/lib/singlem/orf_length_checker.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-12T08:13:48,342 running install_data 2024-07-12T08:13:48,366 creating build/bdist.linux-armv7l/wheel/singlem-0.18.1.data 2024-07-12T08:13:48,367 creating build/bdist.linux-armv7l/wheel/singlem-0.18.1.data/data 2024-07-12T08:13:48,369 copying README.md -> build/bdist.linux-armv7l/wheel/singlem-0.18.1.data/data/. 2024-07-12T08:13:48,371 copying LICENCE.txt -> build/bdist.linux-armv7l/wheel/singlem-0.18.1.data/data/. 2024-07-12T08:13:48,373 running install_egg_info 2024-07-12T08:13:48,402 Copying singlem.egg-info to build/bdist.linux-armv7l/wheel/singlem-0.18.1-py3.9.egg-info 2024-07-12T08:13:48,412 running install_scripts 2024-07-12T08:13:48,414 creating build/bdist.linux-armv7l/wheel/singlem-0.18.1.data/scripts 2024-07-12T08:13:48,415 copying build/scripts-3.9/singlem -> build/bdist.linux-armv7l/wheel/singlem-0.18.1.data/scripts 2024-07-12T08:13:48,419 changing mode of build/bdist.linux-armv7l/wheel/singlem-0.18.1.data/scripts/singlem to 755 2024-07-12T08:13:48,438 adding license file "LICENCE.txt" (matched pattern "LICEN[CS]E*") 2024-07-12T08:13:48,443 creating build/bdist.linux-armv7l/wheel/singlem-0.18.1.dist-info/WHEEL 2024-07-12T08:13:48,445 creating '/tmp/pip-wheel-wbec0yib/singlem-0.18.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-12T08:13:48,449 adding 'singlem/__init__.py' 2024-07-12T08:13:48,452 adding 'singlem/appraisal_result.py' 2024-07-12T08:13:48,455 adding 'singlem/appraiser.py' 2024-07-12T08:13:48,457 adding 'singlem/archive_otu_table.py' 2024-07-12T08:13:48,459 adding 'singlem/chainsaw.py' 2024-07-12T08:13:48,460 adding 'singlem/checkm2.py' 2024-07-12T08:13:48,462 adding 'singlem/clusterer.py' 2024-07-12T08:13:48,469 adding 'singlem/condense.py' 2024-07-12T08:13:48,471 adding 'singlem/dereplicator.py' 2024-07-12T08:13:48,472 adding 'singlem/diamond_parser.py' 2024-07-12T08:13:48,474 adding 'singlem/diamond_spkg_searcher.py' 2024-07-12T08:13:48,476 adding 'singlem/genome_fasta_mux.py' 2024-07-12T08:13:48,477 adding 'singlem/genome_size.py' 2024-07-12T08:13:48,479 adding 'singlem/graftm_result.py' 2024-07-12T08:13:48,481 adding 'singlem/hmm_logo.py' 2024-07-12T08:13:48,482 adding 'singlem/kingfisher_sra.py' 2024-07-12T08:13:48,484 adding 'singlem/known_otu_table.py' 2024-07-12T08:13:48,486 adding 'singlem/metagenome_otu_finder.py' 2024-07-12T08:13:48,489 adding 'singlem/metapackage.py' 2024-07-12T08:13:48,491 adding 'singlem/metapackage_read_name_store.py' 2024-07-12T08:13:48,493 adding 'singlem/ordered_set.py' 2024-07-12T08:13:48,495 adding 'singlem/orf_length_checker.py' 2024-07-12T08:13:48,496 adding 'singlem/otu_table.py' 2024-07-12T08:13:48,499 adding 'singlem/otu_table_collection.py' 2024-07-12T08:13:48,500 adding 'singlem/otu_table_entry.py' 2024-07-12T08:13:48,502 adding 'singlem/package_creator.py' 2024-07-12T08:13:48,513 adding 'singlem/pipe.py' 2024-07-12T08:13:48,516 adding 'singlem/pipe_sequence_extractor.py' 2024-07-12T08:13:48,519 adding 'singlem/pipe_taxonomy_assigner_by_query.py' 2024-07-12T08:13:48,521 adding 'singlem/placement_parser.py' 2024-07-12T08:13:48,525 adding 'singlem/querier.py' 2024-07-12T08:13:48,527 adding 'singlem/query_formatters.py' 2024-07-12T08:13:48,529 adding 'singlem/rarefier.py' 2024-07-12T08:13:48,531 adding 'singlem/read_fraction.py' 2024-07-12T08:13:48,533 adding 'singlem/regenerator.py' 2024-07-12T08:13:48,535 adding 'singlem/renew.py' 2024-07-12T08:13:48,537 adding 'singlem/run_via_os_system.py' 2024-07-12T08:13:48,539 adding 'singlem/sequence_classes.py' 2024-07-12T08:13:48,544 adding 'singlem/sequence_database.py' 2024-07-12T08:13:48,546 adding 'singlem/sequence_extractor.py' 2024-07-12T08:13:48,547 adding 'singlem/singlem.py' 2024-07-12T08:13:48,549 adding 'singlem/singlem_database_models.py' 2024-07-12T08:13:48,551 adding 'singlem/singlem_package.py' 2024-07-12T08:13:48,553 adding 'singlem/strain_summariser.py' 2024-07-12T08:13:48,555 adding 'singlem/streaming_hmm_search_result.py' 2024-07-12T08:13:48,559 adding 'singlem/summariser.py' 2024-07-12T08:13:48,565 adding 'singlem/supplement.py' 2024-07-12T08:13:48,567 adding 'singlem/taxonomy.py' 2024-07-12T08:13:48,569 adding 'singlem/taxonomy_bihash.py' 2024-07-12T08:13:48,570 adding 'singlem/trim_package_hmms.py' 2024-07-12T08:13:48,572 adding 'singlem/version.py' 2024-07-12T08:13:48,574 adding 'singlem/biolib_lite/__init__.py' 2024-07-12T08:13:48,576 adding 'singlem/biolib_lite/common.py' 2024-07-12T08:13:48,577 adding 'singlem/biolib_lite/custom_help_formatter.py' 2024-07-12T08:13:48,579 adding 'singlem/biolib_lite/exceptions.py' 2024-07-12T08:13:48,581 adding 'singlem/biolib_lite/execute.py' 2024-07-12T08:13:48,583 adding 'singlem/biolib_lite/logger.py' 2024-07-12T08:13:48,585 adding 'singlem/biolib_lite/newick.py' 2024-07-12T08:13:48,587 adding 'singlem/biolib_lite/parallel.py' 2024-07-12T08:13:48,589 adding 'singlem/biolib_lite/prodigal_biolib.py' 2024-07-12T08:13:48,592 adding 'singlem/biolib_lite/seq_io.py' 2024-07-12T08:13:48,595 adding 'singlem/biolib_lite/taxonomy.py' 2024-07-12T08:13:48,603 adding 'singlem-0.18.1.data/data/LICENCE.txt' 2024-07-12T08:13:48,605 adding 'singlem-0.18.1.data/data/README.md' 2024-07-12T08:13:48,616 adding 'singlem-0.18.1.data/scripts/singlem' 2024-07-12T08:13:48,624 adding 'singlem-0.18.1.dist-info/LICENCE.txt' 2024-07-12T08:13:48,625 adding 'singlem-0.18.1.dist-info/METADATA' 2024-07-12T08:13:48,627 adding 'singlem-0.18.1.dist-info/WHEEL' 2024-07-12T08:13:48,628 adding 'singlem-0.18.1.dist-info/top_level.txt' 2024-07-12T08:13:48,630 adding 'singlem-0.18.1.dist-info/RECORD' 2024-07-12T08:13:48,634 removing build/bdist.linux-armv7l/wheel 2024-07-12T08:13:48,751 Building wheel for singlem (setup.py): finished with status 'done' 2024-07-12T08:13:48,756 Created wheel for singlem: filename=singlem-0.18.1-py3-none-any.whl size=219324 sha256=31d4ed37512fc7fc55a8b5b14fa0a274996b8524b4546ce7684c37e1506709ca 2024-07-12T08:13:48,757 Stored in directory: /tmp/pip-ephem-wheel-cache-y1ys1r85/wheels/d7/14/d1/9022c1a03459ba4004f178c09646f9d5bde9123ed2a0bbadeb 2024-07-12T08:13:48,771 Successfully built singlem 2024-07-12T08:13:48,782 Removed build tracker: '/tmp/pip-build-tracker-pe96pgxy'