2024-07-12T09:26:11,151 Created temporary directory: /tmp/pip-build-tracker-uoftzotn
2024-07-12T09:26:11,153 Initialized build tracking at /tmp/pip-build-tracker-uoftzotn
2024-07-12T09:26:11,153 Created build tracker: /tmp/pip-build-tracker-uoftzotn
2024-07-12T09:26:11,153 Entered build tracker: /tmp/pip-build-tracker-uoftzotn
2024-07-12T09:26:11,154 Created temporary directory: /tmp/pip-wheel-v1v4vxag
2024-07-12T09:26:11,158 Created temporary directory: /tmp/pip-ephem-wheel-cache-2kfbnjk6
2024-07-12T09:26:11,186 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-12T09:26:11,189 2 location(s) to search for versions of moleculekit:
2024-07-12T09:26:11,189 * https://pypi.org/simple/moleculekit/
2024-07-12T09:26:11,189 * https://www.piwheels.org/simple/moleculekit/
2024-07-12T09:26:11,190 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-07-12T09:26:11,190 Getting page https://pypi.org/simple/moleculekit/
2024-07-12T09:26:11,192 Found index url https://pypi.org/simple/
2024-07-12T09:26:11,249 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-07-12T09:26:11,294   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,294   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-07-12T09:26:11,295   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,295   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-07-12T09:26:11,295   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,295   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-07-12T09:26:11,296   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,296   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-07-12T09:26:11,296   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,296   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-07-12T09:26:11,297   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,297   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-07-12T09:26:11,297   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,297   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-07-12T09:26:11,298   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,298   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-07-12T09:26:11,298   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,298   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-07-12T09:26:11,299   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,299   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-07-12T09:26:11,299   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,299   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-07-12T09:26:11,300   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,300   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-07-12T09:26:11,300   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,300   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-07-12T09:26:11,300   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,301   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-07-12T09:26:11,301   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,301   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-07-12T09:26:11,301   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,302   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-07-12T09:26:11,302   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,302   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-07-12T09:26:11,302   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,303   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-07-12T09:26:11,303   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,303   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-07-12T09:26:11,303   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,303   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-07-12T09:26:11,304   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,304   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-07-12T09:26:11,304   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,304   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-07-12T09:26:11,305   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,305   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-07-12T09:26:11,305   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,305   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-07-12T09:26:11,305   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,306   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-07-12T09:26:11,306   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,306   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-07-12T09:26:11,306   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,307   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-07-12T09:26:11,307   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,307   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-07-12T09:26:11,307   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,308   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-07-12T09:26:11,308   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,308   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-07-12T09:26:11,308   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,308   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-07-12T09:26:11,309   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,309   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-07-12T09:26:11,309   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-12T09:26:11,309   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2024-07-12T09:26:11,310   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-07-12T09:26:11,313   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
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2024-07-12T09:26:11,326   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-07-12T09:26:11,327   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-07-12T09:26:11,327   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-07-12T09:26:11,327   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-07-12T09:26:11,328   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-07-12T09:26:11,328   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-07-12T09:26:11,328   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-07-12T09:26:11,328   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-07-12T09:26:11,329   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-07-12T09:26:11,329   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-07-12T09:26:11,329   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-07-12T09:26:11,329   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
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2024-07-12T09:26:11,330   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-07-12T09:26:11,330   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-07-12T09:26:11,331   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-07-12T09:26:11,331   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-07-12T09:26:11,331   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-07-12T09:26:11,331   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-07-12T09:26:11,332   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-07-12T09:26:11,332   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-07-12T09:26:11,332   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-07-12T09:26:11,332   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-07-12T09:26:11,333   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-07-12T09:26:11,333   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-07-12T09:26:11,333   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-07-12T09:26:11,333   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-07-12T09:26:11,334   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-07-12T09:26:11,334   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-07-12T09:26:11,334   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-07-12T09:26:11,335   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-07-12T09:26:11,335   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-07-12T09:26:11,335   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-07-12T09:26:11,336   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-07-12T09:26:11,336   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-07-12T09:26:11,336   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-07-12T09:26:11,336   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-07-12T09:26:11,337   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-07-12T09:26:11,337   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-07-12T09:26:11,337   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-07-12T09:26:11,338   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-07-12T09:26:11,338   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-07-12T09:26:11,338   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-07-12T09:26:11,338   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-07-12T09:26:11,339   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-07-12T09:26:11,339   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-07-12T09:26:11,339   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-07-12T09:26:11,340   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-07-12T09:26:11,341   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-07-12T09:26:11,341   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-07-12T09:26:11,342   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-07-12T09:26:11,342   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-07-12T09:26:11,343   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-07-12T09:26:11,343   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-07-12T09:26:11,344   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-07-12T09:26:11,344   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-07-12T09:26:11,345   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-07-12T09:26:11,345   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-07-12T09:26:11,346   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-07-12T09:26:11,347   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-07-12T09:26:11,347   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-07-12T09:26:11,348   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-07-12T09:26:11,348   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-07-12T09:26:11,349   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-07-12T09:26:11,349   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-07-12T09:26:11,350   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-07-12T09:26:11,350   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
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2024-07-12T09:26:11,351   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-07-12T09:26:11,352   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-07-12T09:26:11,353   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-07-12T09:26:11,353   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-07-12T09:26:11,354   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-07-12T09:26:11,354   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-07-12T09:26:11,355   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-07-12T09:26:11,355   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-07-12T09:26:11,356   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-07-12T09:26:11,356   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-07-12T09:26:11,357   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-07-12T09:26:11,357   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-07-12T09:26:11,358   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-07-12T09:26:11,359   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-07-12T09:26:11,359   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-07-12T09:26:11,360   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-07-12T09:26:11,360   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-07-12T09:26:11,361   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-07-12T09:26:11,361   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-07-12T09:26:11,362   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-07-12T09:26:11,362   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-07-12T09:26:11,363   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-07-12T09:26:11,363   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-07-12T09:26:11,364   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-07-12T09:26:11,364   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-07-12T09:26:11,365   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-07-12T09:26:11,365   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-07-12T09:26:11,366   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-07-12T09:26:11,367   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-07-12T09:26:11,367   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-07-12T09:26:11,368   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-07-12T09:26:11,368   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-07-12T09:26:11,369   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-07-12T09:26:11,369   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-07-12T09:26:11,370   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-07-12T09:26:11,370   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-07-12T09:26:11,371   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-07-12T09:26:11,372   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-07-12T09:26:11,372   Found link https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.31
2024-07-12T09:26:11,373   Found link https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.32
2024-07-12T09:26:11,373   Found link https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.33
2024-07-12T09:26:11,374   Found link https://files.pythonhosted.org/packages/d4/0f/1b1f0d41c3ff855afca374140213f1c43b3a9659eebc4460899fead843ff/moleculekit-1.8.34.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.34
2024-07-12T09:26:11,374   Found link https://files.pythonhosted.org/packages/26/6b/1104888679e9faf8b0e4e9b15586ea7532e171fe127c06e067c9ad563238/moleculekit-1.8.35.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.35
2024-07-12T09:26:11,375   Found link https://files.pythonhosted.org/packages/cf/5e/035ee54b5606e7489eed8e94571ca014339f5a6959902eff9f40bf4e0d7f/moleculekit-1.8.36.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.36
2024-07-12T09:26:11,375   Found link https://files.pythonhosted.org/packages/38/d6/30462b4aeb3cb9ae0244bc9882779d3249e39393f5ea71c6abc2d36bb1ed/moleculekit-1.9.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.0
2024-07-12T09:26:11,376   Found link https://files.pythonhosted.org/packages/03/ac/c81679ee7481d8dd7e0fa576dafe3963c48c065ab2ca808b53f59693c211/moleculekit-1.9.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.1
2024-07-12T09:26:11,376   Found link https://files.pythonhosted.org/packages/32/f1/d21bc1d0589eb9e230a6f35f2650e452a0f85915c109cf8284747fea3232/moleculekit-1.9.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.2
2024-07-12T09:26:11,377   Found link https://files.pythonhosted.org/packages/ca/05/d8f5b1524d14a61baab43f3e90980410577ccf19eb191053c29e134c534f/moleculekit-1.9.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.3
2024-07-12T09:26:11,377   Found link https://files.pythonhosted.org/packages/83/e9/01c7636faef3dff648a5348a7203cef9ab9dbbde1336a10b21678e4afb1d/moleculekit-1.9.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.4
2024-07-12T09:26:11,378 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-07-12T09:26:11,378 Getting page https://www.piwheels.org/simple/moleculekit/
2024-07-12T09:26:11,379 Found index url https://www.piwheels.org/simple/
2024-07-12T09:26:11,481 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-07-12T09:26:11,585   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.3-cp39-cp39-linux_armv6l.whl#sha256=737b7930ae3bbd4d7f37ce6a001822add326da11894b0ee79c5963f1e22a9504 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,585   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.3-cp39-cp39-linux_armv7l.whl#sha256=737b7930ae3bbd4d7f37ce6a001822add326da11894b0ee79c5963f1e22a9504 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.2-cp39-cp39-linux_armv6l.whl#sha256=e5f605262f03ab78ddfad81b85f6a8d5607bc553bf969bd724a5739cab3389fe (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.2-cp39-cp39-linux_armv7l.whl#sha256=e5f605262f03ab78ddfad81b85f6a8d5607bc553bf969bd724a5739cab3389fe (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.1-cp39-cp39-linux_armv6l.whl#sha256=7bfd68c4ee35c25aa2569cac08a2934d167dca7b1acd437b5ce788f78566e029 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.1-cp39-cp39-linux_armv7l.whl#sha256=7bfd68c4ee35c25aa2569cac08a2934d167dca7b1acd437b5ce788f78566e029 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp311-cp311-linux_armv6l.whl#sha256=d6035d34abe9a702dc48a7b6e979670c6e0eb97db1a3a940dbd9f96bfc42eb03 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp311-cp311-linux_armv7l.whl#sha256=d6035d34abe9a702dc48a7b6e979670c6e0eb97db1a3a940dbd9f96bfc42eb03 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp39-cp39-linux_armv6l.whl#sha256=98cbc4f7d5456ab2c8dd35319a4977fe968743136c62077f73fdf423356b3a99 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp39-cp39-linux_armv7l.whl#sha256=98cbc4f7d5456ab2c8dd35319a4977fe968743136c62077f73fdf423356b3a99 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp311-cp311-linux_armv6l.whl#sha256=e0fa24f661e395d9f38f9e1616422ff28e4ed401dd67c35c172ffccf1ea54038 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp311-cp311-linux_armv7l.whl#sha256=e0fa24f661e395d9f38f9e1616422ff28e4ed401dd67c35c172ffccf1ea54038 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,588   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp39-cp39-linux_armv6l.whl#sha256=671167765eb458b97e36ab9bd793dd20c4eec64fd47d38eba8e093b8427307b1 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-12T09:26:11,588   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp39-cp39-linux_armv7l.whl#sha256=671167765eb458b97e36ab9bd793dd20c4eec64fd47d38eba8e093b8427307b1 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-07-12T09:26:11,630   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-12T09:26:11,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,633   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,633   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,633   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,633   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,633   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,633   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,634   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,634   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,634   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,634   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,634   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,635   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,635   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,635   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,635   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,635   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,636   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,636   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,636   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,636   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,636   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,636   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,637   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,637   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,637   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,637   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,637   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,638   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,638   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,638   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,638   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,638   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,639   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,639   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,639   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,639   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,639   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,640   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,640   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,640   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,640   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,640   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,640   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,641   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,641   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,641   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,641   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,641   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,642   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,642   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-12T09:26:11,649   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,650   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-12T09:26:11,650   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-12T09:26:11,650   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,651   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-12T09:26:11,651   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,651   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2024-07-12T09:26:11,651   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-12T09:26:11,652   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-12T09:26:11,652   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-12T09:26:11,655   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.22-py3-none-any.whl#sha256=4bdcc64f301cdd7a24c6f2b0d515152bbde40124568d72b2046003aba6d7d34c (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-12T09:26:11,655   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-12T09:26:11,658 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-07-12T09:26:11,658 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-07-12T09:26:11,702 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-07-12T09:26:11,720 Collecting moleculekit==1.9.4
2024-07-12T09:26:11,722   Created temporary directory: /tmp/pip-unpack-x22nw4k8
2024-07-12T09:26:11,765   Downloading moleculekit-1.9.4.tar.gz (6.8 MB)
2024-07-12T09:26:13,999   Added moleculekit==1.9.4 from https://files.pythonhosted.org/packages/83/e9/01c7636faef3dff648a5348a7203cef9ab9dbbde1336a10b21678e4afb1d/moleculekit-1.9.4.tar.gz to build tracker '/tmp/pip-build-tracker-uoftzotn'
2024-07-12T09:26:14,008   Created temporary directory: /tmp/pip-build-env-2p4h1i2d
2024-07-12T09:26:14,018   Installing build dependencies: started
2024-07-12T09:26:14,019   Running command pip subprocess to install build dependencies
2024-07-12T09:26:15,190   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-07-12T09:26:15,726   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-12T09:26:17,197   Collecting setuptools
2024-07-12T09:26:17,213     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.3.0-py3-none-any.whl (931 kB)
2024-07-12T09:26:18,292   Collecting numpy>=1.18.5
2024-07-12T09:26:18,309     Using cached https://www.piwheels.org/simple/numpy/numpy-2.0.0-cp39-cp39-linux_armv7l.whl (5.8 MB)
2024-07-12T09:26:19,897   Collecting Cython>=0.29.21
2024-07-12T09:26:19,917     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-07-12T09:26:20,286   Collecting toml
2024-07-12T09:26:20,303     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-07-12T09:26:20,404   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-07-12T09:26:20,424     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-07-12T09:26:20,556   Collecting tomli (from versioneer[toml]==0.28)
2024-07-12T09:26:20,573     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-07-12T09:26:22,385   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-07-12T09:26:22,424     Creating /tmp/pip-build-env-2p4h1i2d/overlay/bin
2024-07-12T09:26:22,426     changing mode of /tmp/pip-build-env-2p4h1i2d/overlay/bin/versioneer to 755
2024-07-12T09:26:32,980     changing mode of /tmp/pip-build-env-2p4h1i2d/overlay/bin/f2py to 755
2024-07-12T09:26:32,983     changing mode of /tmp/pip-build-env-2p4h1i2d/overlay/bin/numpy-config to 755
2024-07-12T09:26:36,349     changing mode of /tmp/pip-build-env-2p4h1i2d/overlay/bin/cygdb to 755
2024-07-12T09:26:36,351     changing mode of /tmp/pip-build-env-2p4h1i2d/overlay/bin/cython to 755
2024-07-12T09:26:36,353     changing mode of /tmp/pip-build-env-2p4h1i2d/overlay/bin/cythonize to 755
2024-07-12T09:26:36,379   Successfully installed Cython-3.0.10 numpy-2.0.0 setuptools-70.3.0 toml-0.10.2 tomli-2.0.1 versioneer-0.28

2024-07-12T09:26:36,561   [notice] A new release of pip is available: 24.0 -> 24.1.2
2024-07-12T09:26:36,561   [notice] To update, run: python3 -m pip install --upgrade pip
2024-07-12T09:26:37,038   Installing build dependencies: finished with status 'done'
2024-07-12T09:26:37,042   Getting requirements to build wheel: started
2024-07-12T09:26:37,043   Running command Getting requirements to build wheel
2024-07-12T09:27:15,722   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-07-12T09:27:25,104   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-12T09:27:25,104   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-12T09:27:25,104   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-12T09:27:25,105   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-12T09:27:25,105   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-12T09:27:25,105   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-12T09:27:25,105   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-12T09:27:25,105   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-12T09:27:25,105   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-12T09:27:25,105   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-12T09:27:25,106   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-12T09:27:25,106   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-12T09:27:25,106   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-12T09:27:25,106   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-12T09:27:25,106   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-12T09:27:25,106   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-07-12T09:27:25,107   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-07-12T09:27:25,107   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-07-12T09:27:25,107   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-07-12T09:27:25,107   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-07-12T09:27:25,107   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-07-12T09:27:25,107   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-07-12T09:27:25,107   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-07-12T09:27:25,107   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-07-12T09:27:25,108   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-07-12T09:27:25,108   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-07-12T09:27:25,108   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-07-12T09:27:25,108   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-07-12T09:27:25,108   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-07-12T09:27:25,108   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-07-12T09:27:25,427   running egg_info
2024-07-12T09:27:25,434   writing moleculekit.egg-info/PKG-INFO
2024-07-12T09:27:25,437   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-07-12T09:27:25,439   writing requirements to moleculekit.egg-info/requires.txt
2024-07-12T09:27:25,441   writing top-level names to moleculekit.egg-info/top_level.txt
2024-07-12T09:27:25,474   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,474   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,474   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,474   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,474   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,475   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,475   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,475   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,475   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,475   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,475   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,475   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,476   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,476   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,476   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,476   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,476   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,476   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,476   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,477   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,477   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,477   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,477   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,477   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,477   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,477   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,477   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,478   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,478   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,478   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,478   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,478   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,478   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,478   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,478   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,479   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,479   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,479   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,479   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,479   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,479   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,479   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,479   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,480   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,480   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,480   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,480   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,480   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,480   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-07-12T09:27:25,480   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,481   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,481   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,481   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,481   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,481   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,481   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,481   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,482   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,482   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,483   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,483   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,484   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,484   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,484   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,485   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,485   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,485   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,485   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,486   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,486   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,487   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,487   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,487   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,487   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:25,499   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-12T09:27:25,533   reading manifest template 'MANIFEST.in'
2024-07-12T09:27:25,811   no previously-included directories found matching 'moleculekit/test-data'
2024-07-12T09:27:25,813   no previously-included directories found matching 'moleculekit/tests'
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2024-07-12T09:27:25,814   adding license file 'LICENSE'
2024-07-12T09:27:25,833   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-12T09:27:27,428   Getting requirements to build wheel: finished with status 'done'
2024-07-12T09:27:27,433   Created temporary directory: /tmp/pip-modern-metadata-9r4tv421
2024-07-12T09:27:27,436   Preparing metadata (pyproject.toml): started
2024-07-12T09:27:27,437   Running command Preparing metadata (pyproject.toml)
2024-07-12T09:27:29,884   running dist_info
2024-07-12T09:27:29,886   creating /tmp/pip-modern-metadata-9r4tv421/moleculekit.egg-info
2024-07-12T09:27:29,892   writing /tmp/pip-modern-metadata-9r4tv421/moleculekit.egg-info/PKG-INFO
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2024-07-12T09:27:29,901   writing manifest file '/tmp/pip-modern-metadata-9r4tv421/moleculekit.egg-info/SOURCES.txt'
2024-07-12T09:27:29,926   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,927   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,927   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,927   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,927   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,927   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-07-12T09:27:29,928   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-07-12T09:27:29,932   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,932   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,932   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,932   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,932   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,932   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,932   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,933   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,933   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,933   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,933   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,933   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,933   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,933   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,933   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,934   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,934   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,934   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,934   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,934   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,934   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,934   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,935   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,936   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,936   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,936   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,936   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,937   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,937   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,937   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,937   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,938   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,938   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,938   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,939   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,939   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,939   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,939   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:29,945   reading manifest file '/tmp/pip-modern-metadata-9r4tv421/moleculekit.egg-info/SOURCES.txt'
2024-07-12T09:27:29,947   reading manifest template 'MANIFEST.in'
2024-07-12T09:27:30,215   no previously-included directories found matching 'moleculekit/test-data'
2024-07-12T09:27:30,216   no previously-included directories found matching 'moleculekit/tests'
2024-07-12T09:27:30,217   no previously-included directories found matching 'package'
2024-07-12T09:27:30,217   adding license file 'LICENSE'
2024-07-12T09:27:30,231   writing manifest file '/tmp/pip-modern-metadata-9r4tv421/moleculekit.egg-info/SOURCES.txt'
2024-07-12T09:27:30,240   creating '/tmp/pip-modern-metadata-9r4tv421/moleculekit-1.9.4.dist-info'
2024-07-12T09:27:30,431   Preparing metadata (pyproject.toml): finished with status 'done'
2024-07-12T09:27:30,438   Source in /tmp/pip-wheel-v1v4vxag/moleculekit_be672155c56b4b85a2127dabcf27a3af has version 1.9.4, which satisfies requirement moleculekit==1.9.4 from https://files.pythonhosted.org/packages/83/e9/01c7636faef3dff648a5348a7203cef9ab9dbbde1336a10b21678e4afb1d/moleculekit-1.9.4.tar.gz
2024-07-12T09:27:30,439   Removed moleculekit==1.9.4 from https://files.pythonhosted.org/packages/83/e9/01c7636faef3dff648a5348a7203cef9ab9dbbde1336a10b21678e4afb1d/moleculekit-1.9.4.tar.gz from build tracker '/tmp/pip-build-tracker-uoftzotn'
2024-07-12T09:27:30,445 Created temporary directory: /tmp/pip-unpack-8i_3w0tv
2024-07-12T09:27:30,446 Created temporary directory: /tmp/pip-unpack-9cccgja6
2024-07-12T09:27:30,454 Building wheels for collected packages: moleculekit
2024-07-12T09:27:30,459   Created temporary directory: /tmp/pip-wheel-79ekpo5w
2024-07-12T09:27:30,459   Destination directory: /tmp/pip-wheel-79ekpo5w
2024-07-12T09:27:30,461   Building wheel for moleculekit (pyproject.toml): started
2024-07-12T09:27:30,462   Running command Building wheel for moleculekit (pyproject.toml)
2024-07-12T09:27:32,750   running bdist_wheel
2024-07-12T09:27:32,766   running build
2024-07-12T09:27:32,766   running build_py
2024-07-12T09:27:32,773   creating build
2024-07-12T09:27:32,774   creating build/lib.linux-armv7l-cpython-39
2024-07-12T09:27:32,775   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,776   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,779   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,781   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,783   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,785   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,786   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,789   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,790   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,793   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,794   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,798   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,800   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,804   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,806   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,808   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,813   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,815   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,817   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,819   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,821   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,823   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:32,826   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-12T09:27:32,826   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-12T09:27:32,829   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-12T09:27:32,831   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-12T09:27:32,834   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,835   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,837   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,839   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,841   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,843   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,845   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,848   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,850   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,853   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,855   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,857   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,859   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,862   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,865   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,867   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-12T09:27:32,870   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-12T09:27:32,870   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-12T09:27:32,873   copying moleculekit/smallmol/smallmolcdp.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-12T09:27:32,875   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-12T09:27:32,877   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-12T09:27:32,881   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-12T09:27:32,882   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-12T09:27:32,884   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-12T09:27:32,887   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-07-12T09:27:32,888   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-07-12T09:27:32,890   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-12T09:27:32,890   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-12T09:27:32,892   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-12T09:27:32,897   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-12T09:27:32,900   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-12T09:27:32,901   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-12T09:27:32,904   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-12T09:27:32,906   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-12T09:27:32,907   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-12T09:27:32,909   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-12T09:27:32,912   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-12T09:27:32,914   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-12T09:27:32,917   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,917   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,920   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,922   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,925   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,927   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,929   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,932   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,934   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,936   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,938   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,941   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,944   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,946   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,949   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-12T09:27:32,951   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-12T09:27:32,952   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-12T09:27:32,954   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-12T09:27:32,956   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-12T09:27:32,958   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-12T09:27:32,961   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-12T09:27:32,962   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-12T09:27:32,964   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-12T09:27:32,966   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-12T09:27:32,969   copying moleculekit/pdbx/reader/BinaryCifReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-12T09:27:32,971   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-12T09:27:32,974   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-12T09:27:32,975   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-12T09:27:32,977   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-12T09:27:32,979   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-12T09:27:32,980   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-12T09:27:32,982   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-12T09:27:32,984   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-12T09:27:32,986   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-12T09:27:32,988   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-12T09:27:32,989   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-12T09:27:32,991   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-12T09:27:32,993   running egg_info
2024-07-12T09:27:32,998   writing moleculekit.egg-info/PKG-INFO
2024-07-12T09:27:33,002   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-07-12T09:27:33,003   writing requirements to moleculekit.egg-info/requires.txt
2024-07-12T09:27:33,005   writing top-level names to moleculekit.egg-info/top_level.txt
2024-07-12T09:27:33,024   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,024   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,025   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,025   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,025   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,025   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,025   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,025   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,025   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,026   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,026   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,026   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,026   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,026   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,026   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,026   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,027   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,027   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,027   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,027   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,027   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,027   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,027   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,027   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,028   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,028   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,028   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,028   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,028   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,028   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,028   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,028   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,029   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,029   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,029   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,029   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,029   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,029   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,029   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,029   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,030   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,030   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,030   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,030   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,030   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,030   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,030   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,030   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,031   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,031   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,031   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,031   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,031   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,031   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,031   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,032   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,032   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,032   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,032   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,032   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,033   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,034   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,034   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,034   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,034   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,035   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,035   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,035   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,035   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,035   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,036   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,036   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,036   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,036   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,037   dependency /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-12T09:27:33,043   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-12T09:27:33,052   reading manifest template 'MANIFEST.in'
2024-07-12T09:27:33,325   no previously-included directories found matching 'moleculekit/test-data'
2024-07-12T09:27:33,327   no previously-included directories found matching 'moleculekit/tests'
2024-07-12T09:27:33,328   no previously-included directories found matching 'package'
2024-07-12T09:27:33,329   adding license file 'LICENSE'
2024-07-12T09:27:33,347   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-12T09:27:33,358   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-07-12T09:27:33,358   !!

2024-07-12T09:27:33,358           ********************************************************************************
2024-07-12T09:27:33,358           ############################
2024-07-12T09:27:33,358           # Package would be ignored #
2024-07-12T09:27:33,359           ############################
2024-07-12T09:27:33,359           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-07-12T09:27:33,359           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,359           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,359           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-07-12T09:27:33,359           to the `packages` configuration field.

2024-07-12T09:27:33,360           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,360           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,360           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,360           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,360           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,360           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-07-12T09:27:33,361           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-07-12T09:27:33,361           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,361           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,361           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,361           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,361           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,362           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,362                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,362                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,362                 directory, all directories are treated like packages.
2024-07-12T09:27:33,362           ********************************************************************************

2024-07-12T09:27:33,362   !!
2024-07-12T09:27:33,363     check.warn(importable)
2024-07-12T09:27:33,363   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-07-12T09:27:33,363   !!

2024-07-12T09:27:33,363           ********************************************************************************
2024-07-12T09:27:33,363           ############################
2024-07-12T09:27:33,363           # Package would be ignored #
2024-07-12T09:27:33,364           ############################
2024-07-12T09:27:33,364           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-07-12T09:27:33,364           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,364           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,364           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-07-12T09:27:33,364           to the `packages` configuration field.

2024-07-12T09:27:33,364           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,365           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,365           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,365           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,365           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,365           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-07-12T09:27:33,365           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-07-12T09:27:33,366           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,366           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,366           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,366           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,366           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,367           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,367                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,367                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,367                 directory, all directories are treated like packages.
2024-07-12T09:27:33,367           ********************************************************************************

2024-07-12T09:27:33,367   !!
2024-07-12T09:27:33,367     check.warn(importable)
2024-07-12T09:27:33,368   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-07-12T09:27:33,368   !!

2024-07-12T09:27:33,368           ********************************************************************************
2024-07-12T09:27:33,368           ############################
2024-07-12T09:27:33,368           # Package would be ignored #
2024-07-12T09:27:33,368           ############################
2024-07-12T09:27:33,368           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-07-12T09:27:33,368           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,369           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,369           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-07-12T09:27:33,369           to the `packages` configuration field.

2024-07-12T09:27:33,369           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,369           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,369           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,370           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,370           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,370           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-07-12T09:27:33,370           already explicitly excluding 'moleculekit.cython_utils' via
2024-07-12T09:27:33,370           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,370           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,370           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,371           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,371           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,371           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,371                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,371                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,371                 directory, all directories are treated like packages.
2024-07-12T09:27:33,372           ********************************************************************************

2024-07-12T09:27:33,372   !!
2024-07-12T09:27:33,372     check.warn(importable)
2024-07-12T09:27:33,372   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-07-12T09:27:33,372   !!

2024-07-12T09:27:33,372           ********************************************************************************
2024-07-12T09:27:33,372           ############################
2024-07-12T09:27:33,372           # Package would be ignored #
2024-07-12T09:27:33,373           ############################
2024-07-12T09:27:33,373           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-07-12T09:27:33,373           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,373           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,373           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-07-12T09:27:33,373           to the `packages` configuration field.

2024-07-12T09:27:33,373           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,374           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,374           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,374           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,374           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,374           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-07-12T09:27:33,374           already explicitly excluding 'moleculekit.distance_utils' via
2024-07-12T09:27:33,374           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,375           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,375           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,375           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,375           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,375           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,376                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,376                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,376                 directory, all directories are treated like packages.
2024-07-12T09:27:33,376           ********************************************************************************

2024-07-12T09:27:33,376   !!
2024-07-12T09:27:33,376     check.warn(importable)
2024-07-12T09:27:33,376   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-07-12T09:27:33,376   !!

2024-07-12T09:27:33,377           ********************************************************************************
2024-07-12T09:27:33,377           ############################
2024-07-12T09:27:33,377           # Package would be ignored #
2024-07-12T09:27:33,377           ############################
2024-07-12T09:27:33,377           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-07-12T09:27:33,377           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,377           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,377           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-07-12T09:27:33,378           to the `packages` configuration field.

2024-07-12T09:27:33,378           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,378           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,378           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,378           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,378           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,379           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-07-12T09:27:33,379           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-07-12T09:27:33,379           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,379           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,379           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,379           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,379           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,380           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,380                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,380                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,380                 directory, all directories are treated like packages.
2024-07-12T09:27:33,380           ********************************************************************************

2024-07-12T09:27:33,381   !!
2024-07-12T09:27:33,381     check.warn(importable)
2024-07-12T09:27:33,381   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-07-12T09:27:33,381   !!

2024-07-12T09:27:33,381           ********************************************************************************
2024-07-12T09:27:33,381           ############################
2024-07-12T09:27:33,381           # Package would be ignored #
2024-07-12T09:27:33,381           ############################
2024-07-12T09:27:33,382           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-07-12T09:27:33,382           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,382           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,382           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-07-12T09:27:33,382           to the `packages` configuration field.

2024-07-12T09:27:33,382           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,382           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,382           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,383           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,383           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,383           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-07-12T09:27:33,383           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-07-12T09:27:33,383           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,383           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,384           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,384           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,384           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,384           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,384                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,385                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,385                 directory, all directories are treated like packages.
2024-07-12T09:27:33,385           ********************************************************************************

2024-07-12T09:27:33,385   !!
2024-07-12T09:27:33,385     check.warn(importable)
2024-07-12T09:27:33,385   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-07-12T09:27:33,385   !!

2024-07-12T09:27:33,385           ********************************************************************************
2024-07-12T09:27:33,386           ############################
2024-07-12T09:27:33,386           # Package would be ignored #
2024-07-12T09:27:33,386           ############################
2024-07-12T09:27:33,386           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-07-12T09:27:33,386           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,386           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,386           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-07-12T09:27:33,386           to the `packages` configuration field.

2024-07-12T09:27:33,387           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,387           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,387           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,387           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,387           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,388           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-07-12T09:27:33,388           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-07-12T09:27:33,388           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,388           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,388           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,388           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,388           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,389           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,389                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,389                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,389                 directory, all directories are treated like packages.
2024-07-12T09:27:33,389           ********************************************************************************

2024-07-12T09:27:33,389   !!
2024-07-12T09:27:33,390     check.warn(importable)
2024-07-12T09:27:33,390   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-07-12T09:27:33,390   !!

2024-07-12T09:27:33,390           ********************************************************************************
2024-07-12T09:27:33,390           ############################
2024-07-12T09:27:33,390           # Package would be ignored #
2024-07-12T09:27:33,390           ############################
2024-07-12T09:27:33,390           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-07-12T09:27:33,390           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,391           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,391           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-07-12T09:27:33,391           to the `packages` configuration field.

2024-07-12T09:27:33,391           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,391           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,391           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,392           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,392           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,392           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-07-12T09:27:33,392           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-07-12T09:27:33,392           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,392           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,392           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,393           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,393           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,393           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,393                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,393                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,393                 directory, all directories are treated like packages.
2024-07-12T09:27:33,394           ********************************************************************************

2024-07-12T09:27:33,394   !!
2024-07-12T09:27:33,394     check.warn(importable)
2024-07-12T09:27:33,394   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-07-12T09:27:33,394   !!

2024-07-12T09:27:33,394           ********************************************************************************
2024-07-12T09:27:33,394           ############################
2024-07-12T09:27:33,395           # Package would be ignored #
2024-07-12T09:27:33,395           ############################
2024-07-12T09:27:33,395           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-07-12T09:27:33,395           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,395           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,395           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-07-12T09:27:33,395           to the `packages` configuration field.

2024-07-12T09:27:33,396           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,396           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,396           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,396           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,396           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,396           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-07-12T09:27:33,397           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-07-12T09:27:33,397           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,397           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,397           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,397           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,398           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,398           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,398                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,398                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,398                 directory, all directories are treated like packages.
2024-07-12T09:27:33,398           ********************************************************************************

2024-07-12T09:27:33,399   !!
2024-07-12T09:27:33,399     check.warn(importable)
2024-07-12T09:27:33,399   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-07-12T09:27:33,399   !!

2024-07-12T09:27:33,399           ********************************************************************************
2024-07-12T09:27:33,399           ############################
2024-07-12T09:27:33,399           # Package would be ignored #
2024-07-12T09:27:33,399           ############################
2024-07-12T09:27:33,400           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-07-12T09:27:33,400           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,400           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,400           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-07-12T09:27:33,400           to the `packages` configuration field.

2024-07-12T09:27:33,400           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,400           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,401           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,401           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,401           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,401           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-07-12T09:27:33,401           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-07-12T09:27:33,401           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,402           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,402           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,402           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,402           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,402           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,403                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,403                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,403                 directory, all directories are treated like packages.
2024-07-12T09:27:33,403           ********************************************************************************

2024-07-12T09:27:33,403   !!
2024-07-12T09:27:33,403     check.warn(importable)
2024-07-12T09:27:33,403   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-07-12T09:27:33,403   !!

2024-07-12T09:27:33,404           ********************************************************************************
2024-07-12T09:27:33,404           ############################
2024-07-12T09:27:33,404           # Package would be ignored #
2024-07-12T09:27:33,404           ############################
2024-07-12T09:27:33,404           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-07-12T09:27:33,404           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,404           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,404           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-07-12T09:27:33,405           to the `packages` configuration field.

2024-07-12T09:27:33,405           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,405           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,405           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,405           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,405           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,406           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-07-12T09:27:33,406           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-07-12T09:27:33,406           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,406           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,406           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,406           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,407           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,407           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,407                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,407                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,407                 directory, all directories are treated like packages.
2024-07-12T09:27:33,407           ********************************************************************************

2024-07-12T09:27:33,408   !!
2024-07-12T09:27:33,408     check.warn(importable)
2024-07-12T09:27:33,408   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-07-12T09:27:33,408   !!

2024-07-12T09:27:33,408           ********************************************************************************
2024-07-12T09:27:33,408           ############################
2024-07-12T09:27:33,408           # Package would be ignored #
2024-07-12T09:27:33,408           ############################
2024-07-12T09:27:33,409           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-07-12T09:27:33,409           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,409           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,409           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-07-12T09:27:33,409           to the `packages` configuration field.

2024-07-12T09:27:33,409           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,409           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,410           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,410           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,410           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,410           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-07-12T09:27:33,410           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-07-12T09:27:33,410           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,410           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,411           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,411           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,411           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,411           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,411                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,412                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,412                 directory, all directories are treated like packages.
2024-07-12T09:27:33,412           ********************************************************************************

2024-07-12T09:27:33,412   !!
2024-07-12T09:27:33,412     check.warn(importable)
2024-07-12T09:27:33,412   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-07-12T09:27:33,412   !!

2024-07-12T09:27:33,413           ********************************************************************************
2024-07-12T09:27:33,413           ############################
2024-07-12T09:27:33,413           # Package would be ignored #
2024-07-12T09:27:33,413           ############################
2024-07-12T09:27:33,413           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-07-12T09:27:33,413           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,413           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,414           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-07-12T09:27:33,414           to the `packages` configuration field.

2024-07-12T09:27:33,414           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,414           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,414           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,414           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,415           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,415           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-07-12T09:27:33,415           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-07-12T09:27:33,415           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,415           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,415           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,415           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,416           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,416           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,416                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,416                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,416                 directory, all directories are treated like packages.
2024-07-12T09:27:33,417           ********************************************************************************

2024-07-12T09:27:33,417   !!
2024-07-12T09:27:33,417     check.warn(importable)
2024-07-12T09:27:33,417   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-07-12T09:27:33,417   !!

2024-07-12T09:27:33,418           ********************************************************************************
2024-07-12T09:27:33,418           ############################
2024-07-12T09:27:33,418           # Package would be ignored #
2024-07-12T09:27:33,418           ############################
2024-07-12T09:27:33,418           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-07-12T09:27:33,418           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,418           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,418           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-07-12T09:27:33,419           to the `packages` configuration field.

2024-07-12T09:27:33,419           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,419           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,419           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,419           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,420           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,420           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-07-12T09:27:33,420           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-07-12T09:27:33,420           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,420           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,420           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,421           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,421           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,421           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,421                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,421                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,422                 directory, all directories are treated like packages.
2024-07-12T09:27:33,422           ********************************************************************************

2024-07-12T09:27:33,422   !!
2024-07-12T09:27:33,422     check.warn(importable)
2024-07-12T09:27:33,422   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-07-12T09:27:33,422   !!

2024-07-12T09:27:33,423           ********************************************************************************
2024-07-12T09:27:33,423           ############################
2024-07-12T09:27:33,423           # Package would be ignored #
2024-07-12T09:27:33,423           ############################
2024-07-12T09:27:33,423           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-07-12T09:27:33,423           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,424           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,424           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-07-12T09:27:33,424           to the `packages` configuration field.

2024-07-12T09:27:33,424           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,424           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,424           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,424           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,425           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,425           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-07-12T09:27:33,425           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-07-12T09:27:33,425           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,425           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,425           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,426           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,426           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,426           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,427                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,427                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,427                 directory, all directories are treated like packages.
2024-07-12T09:27:33,427           ********************************************************************************

2024-07-12T09:27:33,427   !!
2024-07-12T09:27:33,427     check.warn(importable)
2024-07-12T09:27:33,427   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-07-12T09:27:33,428   !!

2024-07-12T09:27:33,428           ********************************************************************************
2024-07-12T09:27:33,428           ############################
2024-07-12T09:27:33,428           # Package would be ignored #
2024-07-12T09:27:33,428           ############################
2024-07-12T09:27:33,428           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-07-12T09:27:33,428           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,429           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,429           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-07-12T09:27:33,429           to the `packages` configuration field.

2024-07-12T09:27:33,429           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,429           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,429           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,430           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,430           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,430           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-07-12T09:27:33,430           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-07-12T09:27:33,430           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,430           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,431           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,431           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,431           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,431           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,431                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,432                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,432                 directory, all directories are treated like packages.
2024-07-12T09:27:33,432           ********************************************************************************

2024-07-12T09:27:33,432   !!
2024-07-12T09:27:33,432     check.warn(importable)
2024-07-12T09:27:33,432   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-07-12T09:27:33,432   !!

2024-07-12T09:27:33,433           ********************************************************************************
2024-07-12T09:27:33,433           ############################
2024-07-12T09:27:33,433           # Package would be ignored #
2024-07-12T09:27:33,433           ############################
2024-07-12T09:27:33,433           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-07-12T09:27:33,433           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,433           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,434           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-07-12T09:27:33,434           to the `packages` configuration field.

2024-07-12T09:27:33,434           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,434           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,434           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,435           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,435           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,435           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-07-12T09:27:33,435           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-07-12T09:27:33,435           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,435           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,436           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,436           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,436           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,437           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,437                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,437                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,437                 directory, all directories are treated like packages.
2024-07-12T09:27:33,437           ********************************************************************************

2024-07-12T09:27:33,437   !!
2024-07-12T09:27:33,437     check.warn(importable)
2024-07-12T09:27:33,438   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-07-12T09:27:33,438   !!

2024-07-12T09:27:33,438           ********************************************************************************
2024-07-12T09:27:33,438           ############################
2024-07-12T09:27:33,438           # Package would be ignored #
2024-07-12T09:27:33,438           ############################
2024-07-12T09:27:33,439           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-07-12T09:27:33,439           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,439           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,439           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-07-12T09:27:33,439           to the `packages` configuration field.

2024-07-12T09:27:33,440           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,440           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,440           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,440           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,440           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,441           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-07-12T09:27:33,441           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-07-12T09:27:33,441           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,441           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,441           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,441           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,442           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,442           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,442                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,442                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,442                 directory, all directories are treated like packages.
2024-07-12T09:27:33,443           ********************************************************************************

2024-07-12T09:27:33,443   !!
2024-07-12T09:27:33,443     check.warn(importable)
2024-07-12T09:27:33,443   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-07-12T09:27:33,443   !!

2024-07-12T09:27:33,444           ********************************************************************************
2024-07-12T09:27:33,444           ############################
2024-07-12T09:27:33,444           # Package would be ignored #
2024-07-12T09:27:33,444           ############################
2024-07-12T09:27:33,444           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-07-12T09:27:33,444           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,444           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,445           package, please make sure that 'moleculekit.share' is explicitly added
2024-07-12T09:27:33,445           to the `packages` configuration field.

2024-07-12T09:27:33,445           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,445           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,445           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,446           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,446           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,446           If you don't want 'moleculekit.share' to be distributed and are
2024-07-12T09:27:33,446           already explicitly excluding 'moleculekit.share' via
2024-07-12T09:27:33,446           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,446           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,447           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,447           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,447           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,448           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,448                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,448                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,448                 directory, all directories are treated like packages.
2024-07-12T09:27:33,448           ********************************************************************************

2024-07-12T09:27:33,448   !!
2024-07-12T09:27:33,449     check.warn(importable)
2024-07-12T09:27:33,449   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-07-12T09:27:33,449   !!

2024-07-12T09:27:33,449           ********************************************************************************
2024-07-12T09:27:33,449           ############################
2024-07-12T09:27:33,449           # Package would be ignored #
2024-07-12T09:27:33,449           ############################
2024-07-12T09:27:33,451           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-07-12T09:27:33,451           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,452           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,453           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-07-12T09:27:33,453           to the `packages` configuration field.

2024-07-12T09:27:33,454           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,454           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,454           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,454           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,455           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,455           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-07-12T09:27:33,455           already explicitly excluding 'moleculekit.share.atomselect' via
2024-07-12T09:27:33,455           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,455           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,456           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,456           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,456           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,457           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,457                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,457                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,457                 directory, all directories are treated like packages.
2024-07-12T09:27:33,457           ********************************************************************************

2024-07-12T09:27:33,457   !!
2024-07-12T09:27:33,458     check.warn(importable)
2024-07-12T09:27:33,458   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-07-12T09:27:33,458   !!

2024-07-12T09:27:33,458           ********************************************************************************
2024-07-12T09:27:33,458           ############################
2024-07-12T09:27:33,458           # Package would be ignored #
2024-07-12T09:27:33,458           ############################
2024-07-12T09:27:33,458           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-07-12T09:27:33,459           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,459           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,459           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-07-12T09:27:33,459           to the `packages` configuration field.

2024-07-12T09:27:33,459           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,460           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,460           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,460           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,460           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,461           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-07-12T09:27:33,461           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-07-12T09:27:33,461           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,461           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,461           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,461           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,461           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,462           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,462                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,462                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,462                 directory, all directories are treated like packages.
2024-07-12T09:27:33,462           ********************************************************************************

2024-07-12T09:27:33,463   !!
2024-07-12T09:27:33,463     check.warn(importable)
2024-07-12T09:27:33,463   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-07-12T09:27:33,463   !!

2024-07-12T09:27:33,463           ********************************************************************************
2024-07-12T09:27:33,463           ############################
2024-07-12T09:27:33,463           # Package would be ignored #
2024-07-12T09:27:33,464           ############################
2024-07-12T09:27:33,464           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-07-12T09:27:33,464           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,464           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,464           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-07-12T09:27:33,464           to the `packages` configuration field.

2024-07-12T09:27:33,465           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,465           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,465           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,465           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,465           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,465           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-07-12T09:27:33,466           already explicitly excluding 'moleculekit.tmalign' via
2024-07-12T09:27:33,466           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,466           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,466           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,466           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,466           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,467           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,467                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,467                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,467                 directory, all directories are treated like packages.
2024-07-12T09:27:33,467           ********************************************************************************

2024-07-12T09:27:33,468   !!
2024-07-12T09:27:33,468     check.warn(importable)
2024-07-12T09:27:33,468   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-07-12T09:27:33,468   !!

2024-07-12T09:27:33,468           ********************************************************************************
2024-07-12T09:27:33,468           ############################
2024-07-12T09:27:33,468           # Package would be ignored #
2024-07-12T09:27:33,468           ############################
2024-07-12T09:27:33,469           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-07-12T09:27:33,469           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,469           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,469           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-07-12T09:27:33,469           to the `packages` configuration field.

2024-07-12T09:27:33,469           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,470           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,470           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,470           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,470           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,471           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-07-12T09:27:33,471           already explicitly excluding 'moleculekit.tmalign.include' via
2024-07-12T09:27:33,471           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,471           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,471           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,471           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,472           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,472           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,472                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,472                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,472                 directory, all directories are treated like packages.
2024-07-12T09:27:33,472           ********************************************************************************

2024-07-12T09:27:33,473   !!
2024-07-12T09:27:33,473     check.warn(importable)
2024-07-12T09:27:33,473   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-07-12T09:27:33,473   !!

2024-07-12T09:27:33,473           ********************************************************************************
2024-07-12T09:27:33,473           ############################
2024-07-12T09:27:33,474           # Package would be ignored #
2024-07-12T09:27:33,474           ############################
2024-07-12T09:27:33,474           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-07-12T09:27:33,474           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,474           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,474           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-07-12T09:27:33,475           to the `packages` configuration field.

2024-07-12T09:27:33,475           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,475           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,475           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,475           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,475           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,476           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-07-12T09:27:33,476           already explicitly excluding 'moleculekit.tmalign.src' via
2024-07-12T09:27:33,476           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,476           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,476           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,477           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,477           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,477           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,477                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,478                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,478                 directory, all directories are treated like packages.
2024-07-12T09:27:33,478           ********************************************************************************

2024-07-12T09:27:33,478   !!
2024-07-12T09:27:33,478     check.warn(importable)
2024-07-12T09:27:33,478   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-07-12T09:27:33,478   !!

2024-07-12T09:27:33,479           ********************************************************************************
2024-07-12T09:27:33,479           ############################
2024-07-12T09:27:33,479           # Package would be ignored #
2024-07-12T09:27:33,479           ############################
2024-07-12T09:27:33,479           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-07-12T09:27:33,479           but it is absent from setuptools' `packages` configuration.

2024-07-12T09:27:33,480           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-12T09:27:33,480           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-07-12T09:27:33,480           to the `packages` configuration field.

2024-07-12T09:27:33,480           Alternatively, you can also rely on setuptools' discovery methods
2024-07-12T09:27:33,480           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-12T09:27:33,480           instead of `find_packages(...)`/`find:`).

2024-07-12T09:27:33,481           You can read more about "package discovery" on setuptools documentation page:

2024-07-12T09:27:33,481           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-12T09:27:33,481           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-07-12T09:27:33,481           already explicitly excluding 'moleculekit.wrapping' via
2024-07-12T09:27:33,482           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-12T09:27:33,482           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-12T09:27:33,482           combination with a more fine grained `package-data` configuration.

2024-07-12T09:27:33,482           You can read more about "package data files" on setuptools documentation page:

2024-07-12T09:27:33,482           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-12T09:27:33,483           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-12T09:27:33,483                 even if it does not contain any `.py` files.
2024-07-12T09:27:33,483                 On the other hand, currently there is no concept of package data
2024-07-12T09:27:33,483                 directory, all directories are treated like packages.
2024-07-12T09:27:33,483           ********************************************************************************

2024-07-12T09:27:33,483   !!
2024-07-12T09:27:33,484     check.warn(importable)
2024-07-12T09:27:33,484   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:33,484   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:33,484   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-12T09:27:33,484   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-12T09:27:33,484   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-12T09:27:33,484   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-12T09:27:33,484   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-12T09:27:33,487   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-12T09:27:33,489   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-12T09:27:33,490   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-12T09:27:33,509   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-12T09:27:33,511   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-12T09:27:33,512   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-12T09:27:33,535   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-12T09:27:33,538   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-12T09:27:33,539   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-12T09:27:33,557   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-12T09:27:33,559   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-12T09:27:33,560   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-12T09:27:33,563   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-12T09:27:33,565   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-12T09:27:33,764   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-07-12T09:27:33,765   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-07-12T09:27:33,767   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-07-12T09:27:33,767   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,768   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,770   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,772   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,774   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,776   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,778   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,780   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,782   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,784   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,787   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,789   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,791   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,793   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,795   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,798   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,800   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,802   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,805   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,807   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,809   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,811   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,814   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,816   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,819   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,820   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,822   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,824   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,827   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,829   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,831   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,832   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,835   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,837   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,839   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,841   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,843   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,845   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,847   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,850   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,854   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,858   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,860   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,862   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,864   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,866   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,868   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,870   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,872   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,874   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,876   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,878   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,880   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,882   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,884   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,886   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,888   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,890   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,892   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,894   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,896   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,898   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,900   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,902   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,904   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,906   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,908   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,910   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,912   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,914   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,915   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,917   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,919   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,921   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,923   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,925   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,927   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,929   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,931   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,933   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,935   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,937   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,939   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,941   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,943   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,945   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,947   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,949   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,951   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,953   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,955   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,957   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,959   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,961   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,963   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,965   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,967   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,969   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,971   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,973   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,975   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,976   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,978   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,980   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,983   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,985   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,987   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,989   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,991   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,993   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,995   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,998   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:33,999   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,001   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,003   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,005   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,007   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,009   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,011   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,013   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,015   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,017   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,019   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,021   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,023   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,025   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,027   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,029   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,031   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,032   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,034   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,036   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,038   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,040   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,042   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,044   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,046   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,048   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,050   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,052   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,054   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,055   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,057   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,059   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,061   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,063   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,065   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,067   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,069   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,071   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,073   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,075   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,077   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,078   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,080   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,082   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,084   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,086   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,088   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,090   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,092   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,094   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,096   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,098   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,100   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,102   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,104   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,106   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,108   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,110   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,111   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,113   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,115   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,117   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,119   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,121   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-12T09:27:34,123   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-12T09:27:34,124   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-12T09:27:34,143   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-12T09:27:34,146   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-12T09:27:34,148   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-07-12T09:27:34,148   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-07-12T09:27:34,151   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-12T09:27:34,151   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-12T09:27:34,158   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-12T09:27:34,159   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-12T09:27:34,180   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-12T09:27:34,182   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-12T09:27:34,183   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-12T09:27:34,197   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-12T09:27:34,200   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-12T09:27:34,201   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-12T09:27:34,202   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-12T09:27:34,204   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-12T09:27:34,206   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-12T09:27:34,210   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-12T09:27:34,211   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-12T09:27:34,213   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-12T09:27:34,214   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-12T09:27:34,233   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-12T09:27:34,236   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-12T09:27:34,239   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-12T09:27:34,240   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-12T09:27:34,242   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-12T09:27:34,245   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-12T09:27:34,248   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-12T09:27:34,250   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-12T09:27:34,253   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-12T09:27:34,255   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-12T09:27:34,258   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-12T09:27:34,259   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-12T09:27:34,280   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-12T09:27:34,283   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-12T09:27:34,285   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-12T09:27:34,287   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-12T09:27:34,307   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-12T09:27:34,309   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-12T09:27:34,311   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-12T09:27:34,311   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-12T09:27:34,313   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-12T09:27:34,315   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-12T09:27:34,318   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-12T09:27:34,320   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-12T09:27:34,322   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-12T09:27:34,324   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-12T09:27:34,325   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-12T09:27:34,327   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-12T09:27:34,330   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-12T09:27:34,333   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-12T09:27:34,335   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-12T09:27:34,338   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-12T09:27:34,339   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-12T09:27:34,358   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-12T09:27:34,361   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-12T09:27:34,362   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-12T09:27:34,382   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-12T09:27:34,384   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-12T09:27:34,385   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-12T09:27:34,406   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-12T09:27:34,409   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-12T09:27:34,410   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-12T09:27:34,438   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-12T09:27:34,450   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-07-12T09:27:34,451   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.9.4'
2024-07-12T09:27:34,451   running build_ext
2024-07-12T09:27:34,462   building 'moleculekit.interactions.hbonds' extension
2024-07-12T09:27:34,463   creating build/temp.linux-armv7l-cpython-39
2024-07-12T09:27:34,463   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-07-12T09:27:34,464   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-12T09:27:34,465   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-12T09:27:34,465   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-07-12T09:27:34,775   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:27:34,775                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:27:34,775                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:27:34,775                    from moleculekit/interactions/hbonds/hbonds.cpp:1265:
2024-07-12T09:27:34,776   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:27:34,776      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:27:34,776         |  ^~~~~~~
2024-07-12T09:27:35,223   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-12T09:27:35,224                    from moleculekit/interactions/hbonds/hbonds.cpp:1269:
2024-07-12T09:27:35,224   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-12T09:27:35,224   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-12T09:27:35,224     405 |     return ((longdouble_t *) &z)[0];
2024-07-12T09:27:35,224         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-12T09:27:57,944   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-07-12T09:27:57,944   moleculekit/interactions/hbonds/hbonds.cpp:21469:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:27:57,945   21469 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-07-12T09:27:57,945         |                                                    ^~~~~~~~~~~~~~~
2024-07-12T09:27:57,945   moleculekit/interactions/hbonds/hbonds.cpp:20486:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-07-12T09:27:57,945   20486 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-07-12T09:27:57,945         |                                                         ^~~~~~~~~~~~~~~
2024-07-12T09:28:01,116   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:28:01,433   building 'moleculekit.interactions.pipi' extension
2024-07-12T09:28:01,434   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-12T09:28:01,434   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-07-12T09:28:01,666   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:28:01,666                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:28:01,666                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:28:01,666                    from moleculekit/interactions/pipi/pipi.cpp:1265:
2024-07-12T09:28:01,666   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:28:01,666      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:28:01,667         |  ^~~~~~~
2024-07-12T09:28:02,102   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-12T09:28:02,102                    from moleculekit/interactions/pipi/pipi.cpp:1269:
2024-07-12T09:28:02,102   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-12T09:28:02,102   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-12T09:28:02,102     405 |     return ((longdouble_t *) &z)[0];
2024-07-12T09:28:02,103         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-12T09:28:29,932   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:28:30,298   building 'moleculekit.interactions.cationpi' extension
2024-07-12T09:28:30,299   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-12T09:28:30,299   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-07-12T09:28:30,536   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:28:30,537                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:28:30,537                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:28:30,537                    from moleculekit/interactions/cationpi/cationpi.cpp:1265:
2024-07-12T09:28:30,537   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:28:30,537      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:28:30,537         |  ^~~~~~~
2024-07-12T09:28:30,971   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-12T09:28:30,971                    from moleculekit/interactions/cationpi/cationpi.cpp:1269:
2024-07-12T09:28:30,971   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-12T09:28:30,971   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-12T09:28:30,972     405 |     return ((longdouble_t *) &z)[0];
2024-07-12T09:28:30,972         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-12T09:28:58,470   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:28:58,786   building 'moleculekit.interactions.sigmahole' extension
2024-07-12T09:28:58,787   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-12T09:28:58,788   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-07-12T09:28:59,031   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:28:59,031                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:28:59,031                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:28:59,032                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1265:
2024-07-12T09:28:59,032   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:28:59,032      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:28:59,032         |  ^~~~~~~
2024-07-12T09:28:59,467   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-12T09:28:59,467                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1269:
2024-07-12T09:28:59,467   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-12T09:28:59,467   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-12T09:28:59,468     405 |     return ((longdouble_t *) &z)[0];
2024-07-12T09:28:59,468         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:26,493   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:29:26,821   building 'moleculekit.wrapping' extension
2024-07-12T09:29:26,822   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-12T09:29:26,823   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-07-12T09:29:27,063   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:29:27,064                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:29:27,064                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:29:27,064                    from moleculekit/wrapping/wrapping.cpp:1265:
2024-07-12T09:29:27,064   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:29:27,064      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:29:27,064         |  ^~~~~~~
2024-07-12T09:29:27,501   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-12T09:29:27,502                    from moleculekit/wrapping/wrapping.cpp:1269:
2024-07-12T09:29:27,502   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-12T09:29:27,502   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-12T09:29:27,502     405 |     return ((longdouble_t *) &z)[0];
2024-07-12T09:29:27,502         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:52,896   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:29:53,113   building 'moleculekit.bondguesser_utils' extension
2024-07-12T09:29:53,114   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-12T09:29:53,114   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-07-12T09:29:53,352   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:29:53,352                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:29:53,352                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:29:53,352                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1265:
2024-07-12T09:29:53,352   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:29:53,352      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:29:53,353         |  ^~~~~~~
2024-07-12T09:29:53,784   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-12T09:29:53,785                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1269:
2024-07-12T09:29:53,785   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-12T09:29:53,785   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-12T09:29:53,785     405 |     return ((longdouble_t *) &z)[0];
2024-07-12T09:29:53,785         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,889   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-07-12T09:29:54,889   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20255:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-12T09:29:54,889   20255 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-07-12T09:29:54,889         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-07-12T09:29:54,890   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20267:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-12T09:29:54,890   20267 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-07-12T09:29:54,890         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-07-12T09:29:54,891   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20279:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-12T09:29:54,891   20279 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-07-12T09:29:54,891         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-07-12T09:29:54,892   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20318:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,892   20318 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-12T09:29:54,892         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,893   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20357:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,893   20357 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-12T09:29:54,893         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,894   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20396:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,894   20396 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-12T09:29:54,894         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,895   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20435:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,895   20435 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-12T09:29:54,895         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,896   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20441:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,896   20441 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-12T09:29:54,896         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,897   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20482:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,897   20482 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-12T09:29:54,897         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,898   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20488:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,898   20488 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-12T09:29:54,898         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,899   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20529:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,899   20529 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-12T09:29:54,899         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,899   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20535:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,900   20535 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-12T09:29:54,900         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,901   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20576:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,901   20576 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-12T09:29:54,901         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,902   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20629:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,902   20629 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-12T09:29:54,902         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,903   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20676:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,903   20676 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-12T09:29:54,903         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,904   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20717:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,904   20717 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-12T09:29:54,904         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,904   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20723:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,905   20723 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-12T09:29:54,905         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,905   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20729:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,905   20729 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-12T09:29:54,906         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,906   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20776:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,907   20776 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-12T09:29:54,907         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,907   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20782:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,907   20782 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-12T09:29:54,908         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,908   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20823:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,908   20823 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-12T09:29:54,909         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,909   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20835:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,909   20835 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-12T09:29:54,910         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,911   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20888:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-12T09:29:54,911   20888 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-12T09:29:54,911         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,930   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-07-12T09:29:54,931   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21510:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-12T09:29:54,931   21510 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-07-12T09:29:54,931         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-07-12T09:29:54,931   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21547:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-12T09:29:54,932   21547 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-07-12T09:29:54,932         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-07-12T09:30:18,012   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:30:18,323   building 'moleculekit.atomselect_utils' extension
2024-07-12T09:30:18,323   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-12T09:30:18,324   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-07-12T09:30:18,564   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:30:18,564                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:30:18,564                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:30:18,564                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1282:
2024-07-12T09:30:18,565   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:30:18,565      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:30:18,565         |  ^~~~~~~
2024-07-12T09:30:19,049   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-12T09:30:19,050                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1286:
2024-07-12T09:30:19,050   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-12T09:30:19,050   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-12T09:30:19,050     405 |     return ((longdouble_t *) &z)[0];
2024-07-12T09:30:19,050         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-12T09:30:20,304   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-07-12T09:30:20,304   moleculekit/atomselect_utils/atomselect_utils.cpp:23709:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-12T09:30:20,304   23709 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-07-12T09:30:20,304         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-07-12T09:30:20,310   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-07-12T09:30:20,310   moleculekit/atomselect_utils/atomselect_utils.cpp:23961:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-12T09:30:20,311   23961 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-07-12T09:30:20,311         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-12T09:30:20,316   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-07-12T09:30:20,317   moleculekit/atomselect_utils/atomselect_utils.cpp:24228:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-12T09:30:20,317   24228 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-07-12T09:30:20,317         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-12T09:30:50,367   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:30:50,699   building 'moleculekit.distance_utils' extension
2024-07-12T09:30:50,700   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-12T09:30:50,701   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-07-12T09:30:50,973   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:30:50,973                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:30:50,973                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:30:50,974                    from moleculekit/distance_utils/distance_utils.cpp:1265:
2024-07-12T09:30:50,974   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:30:50,974      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:30:50,974         |  ^~~~~~~
2024-07-12T09:30:51,431   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-12T09:30:51,431                    from moleculekit/distance_utils/distance_utils.cpp:1269:
2024-07-12T09:30:51,431   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-12T09:30:51,431   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-12T09:30:51,432     405 |     return ((longdouble_t *) &z)[0];
2024-07-12T09:30:51,432         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-12T09:30:52,618   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-07-12T09:30:52,618   moleculekit/distance_utils/distance_utils.cpp:21813:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-12T09:30:52,618   21813 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-07-12T09:30:52,619         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-07-12T09:30:52,619   moleculekit/distance_utils/distance_utils.cpp:21825:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-12T09:30:52,619   21825 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-07-12T09:30:52,619         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-07-12T09:31:25,826   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:31:26,164   building 'moleculekit.occupancy_utils' extension
2024-07-12T09:31:26,165   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-12T09:31:26,166   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-07-12T09:31:26,438   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:31:26,439                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:31:26,439                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:31:26,439                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1265:
2024-07-12T09:31:26,439   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:31:26,439      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:31:26,439         |  ^~~~~~~
2024-07-12T09:31:26,867   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-12T09:31:26,867                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1269:
2024-07-12T09:31:26,867   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-12T09:31:26,867   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-12T09:31:26,868     405 |     return ((longdouble_t *) &z)[0];
2024-07-12T09:31:26,868         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-12T09:31:49,410   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:31:49,621   building 'moleculekit.cython_utils' extension
2024-07-12T09:31:49,622   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-12T09:31:49,622   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-07-12T09:31:49,861   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:31:49,861                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:31:49,861                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:31:49,861                    from moleculekit/cython_utils/cython_utils.cpp:1265:
2024-07-12T09:31:49,861   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:31:49,861      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:31:49,862         |  ^~~~~~~
2024-07-12T09:31:50,290   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-12T09:31:50,290                    from moleculekit/cython_utils/cython_utils.cpp:1269:
2024-07-12T09:31:50,291   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-12T09:31:50,291   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-12T09:31:50,291     405 |     return ((longdouble_t *) &z)[0];
2024-07-12T09:31:50,291         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-12T09:32:15,399   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:32:15,719   building 'moleculekit.xtc' extension
2024-07-12T09:32:15,720   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-12T09:32:15,721   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-12T09:32:15,722   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-12T09:32:15,723   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-07-12T09:32:15,965   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,966      66 |  "OK",
2024-07-12T09:32:15,966         |  ^~~~
2024-07-12T09:32:15,966   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,966      67 |  "Header",
2024-07-12T09:32:15,966         |  ^~~~~~~~
2024-07-12T09:32:15,966   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,967      68 |  "String",
2024-07-12T09:32:15,967         |  ^~~~~~~~
2024-07-12T09:32:15,967   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,967      69 |  "Double",
2024-07-12T09:32:15,967         |  ^~~~~~~~
2024-07-12T09:32:15,967   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,967      70 |  "Integer",
2024-07-12T09:32:15,968         |  ^~~~~~~~~
2024-07-12T09:32:15,968   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,968      71 |  "Float",
2024-07-12T09:32:15,968         |  ^~~~~~~
2024-07-12T09:32:15,968   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,968      72 |  "Unsigned integer",
2024-07-12T09:32:15,968         |  ^~~~~~~~~~~~~~~~~~
2024-07-12T09:32:15,969   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,969      73 |  "Compressed 3D coordinate",
2024-07-12T09:32:15,969         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:32:15,969   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,969      74 |  "Closing file",
2024-07-12T09:32:15,969         |  ^~~~~~~~~~~~~~
2024-07-12T09:32:15,969   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,970      75 |  "Magic number",
2024-07-12T09:32:15,970         |  ^~~~~~~~~~~~~~
2024-07-12T09:32:15,970   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,970      76 |  "Not enough memory",
2024-07-12T09:32:15,970         |  ^~~~~~~~~~~~~~~~~~~
2024-07-12T09:32:15,970   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,970      77 |  "End of file",
2024-07-12T09:32:15,970         |  ^~~~~~~~~~~~~
2024-07-12T09:32:15,971   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:15,971      78 |  "File not found"
2024-07-12T09:32:15,971         |  ^~~~~~~~~~~~~~~~
2024-07-12T09:32:15,975   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-07-12T09:32:15,975   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,975     459 |     while (size >= num && num_of_bits < 32)
2024-07-12T09:32:15,975         |            ~~~~~^~~~~~
2024-07-12T09:32:15,975   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-07-12T09:32:15,976   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:15,976     505 |     while (bytes[num_of_bytes] >= num)
2024-07-12T09:32:15,976         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-12T09:32:15,978   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-07-12T09:32:15,978   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,978     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-07-12T09:32:15,978         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-07-12T09:32:15,979   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,979     616 |   for (i = 0; i < num_of_bytes; i++)
2024-07-12T09:32:15,979         |               ~~^~~~~~~~~~~~~~
2024-07-12T09:32:15,979   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,979     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-07-12T09:32:15,979         |               ~~^~~~~~~~~~~~~~~~
2024-07-12T09:32:15,980   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-07-12T09:32:15,980   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:15,980     664 |   if (lastbits < num_of_bits)
2024-07-12T09:32:15,980         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-07-12T09:32:15,983   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-07-12T09:32:15,983   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:15,984     785 |  if(size3>xfp->buf1size)
2024-07-12T09:32:15,984         |     ~~~~~^~~~~~~~~~~~~~
2024-07-12T09:32:15,985   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:15,985     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-12T09:32:15,985         |                   ^
2024-07-12T09:32:15,988   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,988     932 |     if(countmjh >= size3 ) { return -1; }
2024-07-12T09:32:15,988         |        ~~~~~~~~~^~~~~~~~
2024-07-12T09:32:15,988   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,988     935 |     if(countmjh >= size3 ) { return -1; }
2024-07-12T09:32:15,989         |        ~~~~~~~~~^~~~~~~~
2024-07-12T09:32:15,989   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,989     938 |     if(countmjh >= size3 ) { return -1; }
2024-07-12T09:32:15,989         |        ~~~~~~~~~^~~~~~~~
2024-07-12T09:32:15,989   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,989     945 |     if(countmjh >= size3 ) { return -1; }
2024-07-12T09:32:15,989         |        ~~~~~~~~~^~~~~~~~
2024-07-12T09:32:15,990   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,990     948 |     if(countmjh >= size3 ) { return -1; }
2024-07-12T09:32:15,990         |        ~~~~~~~~~^~~~~~~~
2024-07-12T09:32:15,990   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,990     951 |     if(countmjh >= size3 ) { return -1; }
2024-07-12T09:32:15,990         |        ~~~~~~~~~^~~~~~~~
2024-07-12T09:32:15,990   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-12T09:32:15,990     756 |  int smallidx,  minidx, maxidx;
2024-07-12T09:32:15,991         |                 ^~~~~~
2024-07-12T09:32:15,991   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-12T09:32:15,991     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-12T09:32:15,991         |                         ^~~~~~
2024-07-12T09:32:15,991   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-12T09:32:15,991     763 |  int errval=1;
2024-07-12T09:32:15,991         |      ^~~~~~
2024-07-12T09:32:15,992   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-07-12T09:32:15,992   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:15,992    1011 |  if(size3>xfp->buf1size)
2024-07-12T09:32:15,993         |     ~~~~~^~~~~~~~~~~~~~
2024-07-12T09:32:15,994   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,994    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-07-12T09:32:15,995         |                     ~~~~~~~~^~~~~~~
2024-07-12T09:32:15,995   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,995    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-12T09:32:15,995         |                    ~~~~~~~~^~~~~~~
2024-07-12T09:32:15,995   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,996    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-12T09:32:15,996         |                    ~~~~~~~~^~~~~~~
2024-07-12T09:32:15,997   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:15,997    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-07-12T09:32:15,997         |                  ^
2024-07-12T09:32:15,998   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:15,998    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-12T09:32:15,998         |                   ^
2024-07-12T09:32:16,001   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:16,002    1275 |  if(tmp==(unsigned int)buf2[0])
2024-07-12T09:32:16,002         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:32:16,002   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-12T09:32:16,002    1001 |  int errval;
2024-07-12T09:32:16,002         |      ^~~~~~
2024-07-12T09:32:16,004   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-07-12T09:32:16,005   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:16,005    1316 |  if(size3>xfp->buf1size)
2024-07-12T09:32:16,005         |     ~~~~~^~~~~~~~~~~~~~
2024-07-12T09:32:16,007   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:16,007    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-12T09:32:16,007         |                   ^
2024-07-12T09:32:16,009   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-12T09:32:16,010    1289 |  int smallidx,  maxidx, minidx;
2024-07-12T09:32:16,010         |                         ^~~~~~
2024-07-12T09:32:16,010   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-12T09:32:16,010    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-12T09:32:16,010         |                         ^~~~~~
2024-07-12T09:32:16,010   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-12T09:32:16,010    1297 |  int errval=1;
2024-07-12T09:32:16,011         |      ^~~~~~
2024-07-12T09:32:16,012   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-07-12T09:32:16,012   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:16,012    1513 |  if(size3>xfp->buf1size) {
2024-07-12T09:32:16,012         |     ~~~~~^~~~~~~~~~~~~~
2024-07-12T09:32:16,016   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:16,016    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-07-12T09:32:16,016         |                  ^
2024-07-12T09:32:16,017   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:16,017    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-12T09:32:16,017         |                   ^
2024-07-12T09:32:16,020   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:16,021    1743 |  if(tmp==(unsigned int)buf2[0])
2024-07-12T09:32:16,021         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:32:16,021   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-12T09:32:16,021    1504 |  int errval=1;
2024-07-12T09:32:16,021         |      ^~~~~~
2024-07-12T09:32:18,236   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-07-12T09:32:18,491   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-07-12T09:32:19,067   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-07-12T09:32:19,067   moleculekit/fileformats/xtc/src/xtc.cpp:234:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-12T09:32:19,067     234 |   for (aidx = 0; aidx < natoms; aidx++)
2024-07-12T09:32:19,067         |                  ~~~~~^~~~~~~~
2024-07-12T09:32:19,073   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-07-12T09:32:19,073   moleculekit/fileformats/xtc/src/xtc.cpp:436:16: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-12T09:32:19,073     436 |  for (f = 0; f < nframes; f++)
2024-07-12T09:32:19,074         |              ~~^~~~~~~~~
2024-07-12T09:32:19,074   moleculekit/fileformats/xtc/src/xtc.cpp:451:17: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-12T09:32:19,074     451 |   for (i = 0; i < natoms; i++)
2024-07-12T09:32:19,074         |               ~~^~~~~~~~
2024-07-12T09:32:19,076   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-07-12T09:32:19,077   moleculekit/fileformats/xtc/src/xtc.cpp:541:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-12T09:32:19,077     541 |    for (aidx = 0; aidx < natoms; aidx++)
2024-07-12T09:32:19,077         |                   ~~~~~^~~~~~~~
2024-07-12T09:32:19,079   moleculekit/fileformats/xtc/src/xtc.cpp:610:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-12T09:32:19,079     610 |    for (aidx = 0; aidx < natoms; aidx++)
2024-07-12T09:32:19,079         |                   ~~~~~^~~~~~~~
2024-07-12T09:32:19,858   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-07-12T09:32:20,114   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:32:20,114                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:32:20,114                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:32:20,114                    from moleculekit/fileformats/xtc/xtc.cpp:1269:
2024-07-12T09:32:20,114   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:32:20,114      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:32:20,115         |  ^~~~~~~
2024-07-12T09:32:20,548   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-12T09:32:20,548                    from moleculekit/fileformats/xtc/xtc.cpp:1273:
2024-07-12T09:32:20,548   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-12T09:32:20,549   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-12T09:32:20,549     405 |     return ((longdouble_t *) &z)[0];
2024-07-12T09:32:20,549         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-12T09:32:40,119   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:32:40,445   building 'moleculekit.trr' extension
2024-07-12T09:32:40,447   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-07-12T09:32:40,566   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-07-12T09:32:40,800   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,800      66 |  "OK",
2024-07-12T09:32:40,800         |  ^~~~
2024-07-12T09:32:40,800   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,800      67 |  "Header",
2024-07-12T09:32:40,801         |  ^~~~~~~~
2024-07-12T09:32:40,801   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,801      68 |  "String",
2024-07-12T09:32:40,801         |  ^~~~~~~~
2024-07-12T09:32:40,801   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,801      69 |  "Double",
2024-07-12T09:32:40,801         |  ^~~~~~~~
2024-07-12T09:32:40,802   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,802      70 |  "Integer",
2024-07-12T09:32:40,802         |  ^~~~~~~~~
2024-07-12T09:32:40,802   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,802      71 |  "Float",
2024-07-12T09:32:40,802         |  ^~~~~~~
2024-07-12T09:32:40,802   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,803      72 |  "Unsigned integer",
2024-07-12T09:32:40,803         |  ^~~~~~~~~~~~~~~~~~
2024-07-12T09:32:40,803   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,803      73 |  "Compressed 3D coordinate",
2024-07-12T09:32:40,803         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:32:40,803   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,803      74 |  "Closing file",
2024-07-12T09:32:40,803         |  ^~~~~~~~~~~~~~
2024-07-12T09:32:40,804   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,804      75 |  "Magic number",
2024-07-12T09:32:40,804         |  ^~~~~~~~~~~~~~
2024-07-12T09:32:40,804   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,804      76 |  "Not enough memory",
2024-07-12T09:32:40,804         |  ^~~~~~~~~~~~~~~~~~~
2024-07-12T09:32:40,804   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,805      77 |  "End of file",
2024-07-12T09:32:40,805         |  ^~~~~~~~~~~~~
2024-07-12T09:32:40,805   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-12T09:32:40,805      78 |  "File not found"
2024-07-12T09:32:40,805         |  ^~~~~~~~~~~~~~~~
2024-07-12T09:32:40,809   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-07-12T09:32:40,809   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,809     459 |     while (size >= num && num_of_bits < 32)
2024-07-12T09:32:40,810         |            ~~~~~^~~~~~
2024-07-12T09:32:40,810   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-07-12T09:32:40,810   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:40,810     505 |     while (bytes[num_of_bytes] >= num)
2024-07-12T09:32:40,810         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-12T09:32:40,812   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-07-12T09:32:40,812   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,813     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-07-12T09:32:40,813         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-07-12T09:32:40,813   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,813     616 |   for (i = 0; i < num_of_bytes; i++)
2024-07-12T09:32:40,813         |               ~~^~~~~~~~~~~~~~
2024-07-12T09:32:40,813   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,814     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-07-12T09:32:40,814         |               ~~^~~~~~~~~~~~~~~~
2024-07-12T09:32:40,814   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-07-12T09:32:40,814   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:40,814     664 |   if (lastbits < num_of_bits)
2024-07-12T09:32:40,814         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-07-12T09:32:40,817   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-07-12T09:32:40,818   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:40,818     785 |  if(size3>xfp->buf1size)
2024-07-12T09:32:40,818         |     ~~~~~^~~~~~~~~~~~~~
2024-07-12T09:32:40,819   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:40,820     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-12T09:32:40,820         |                   ^
2024-07-12T09:32:40,822   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,822     932 |     if(countmjh >= size3 ) { return -1; }
2024-07-12T09:32:40,822         |        ~~~~~~~~~^~~~~~~~
2024-07-12T09:32:40,823   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,823     935 |     if(countmjh >= size3 ) { return -1; }
2024-07-12T09:32:40,823         |        ~~~~~~~~~^~~~~~~~
2024-07-12T09:32:40,823   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,823     938 |     if(countmjh >= size3 ) { return -1; }
2024-07-12T09:32:40,823         |        ~~~~~~~~~^~~~~~~~
2024-07-12T09:32:40,823   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,824     945 |     if(countmjh >= size3 ) { return -1; }
2024-07-12T09:32:40,824         |        ~~~~~~~~~^~~~~~~~
2024-07-12T09:32:40,824   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,824     948 |     if(countmjh >= size3 ) { return -1; }
2024-07-12T09:32:40,824         |        ~~~~~~~~~^~~~~~~~
2024-07-12T09:32:40,824   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,824     951 |     if(countmjh >= size3 ) { return -1; }
2024-07-12T09:32:40,824         |        ~~~~~~~~~^~~~~~~~
2024-07-12T09:32:40,825   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-12T09:32:40,825     756 |  int smallidx,  minidx, maxidx;
2024-07-12T09:32:40,825         |                 ^~~~~~
2024-07-12T09:32:40,825   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-12T09:32:40,825     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-12T09:32:40,825         |                         ^~~~~~
2024-07-12T09:32:40,825   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-12T09:32:40,825     763 |  int errval=1;
2024-07-12T09:32:40,826         |      ^~~~~~
2024-07-12T09:32:40,826   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-07-12T09:32:40,827   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:40,827    1011 |  if(size3>xfp->buf1size)
2024-07-12T09:32:40,827         |     ~~~~~^~~~~~~~~~~~~~
2024-07-12T09:32:40,828   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,829    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-07-12T09:32:40,829         |                     ~~~~~~~~^~~~~~~
2024-07-12T09:32:40,829   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,829    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-12T09:32:40,829         |                    ~~~~~~~~^~~~~~~
2024-07-12T09:32:40,830   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,830    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-12T09:32:40,830         |                    ~~~~~~~~^~~~~~~
2024-07-12T09:32:40,831   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,832    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-07-12T09:32:40,832         |                  ^
2024-07-12T09:32:40,832   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:40,832    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-12T09:32:40,832         |                   ^
2024-07-12T09:32:40,836   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,836    1275 |  if(tmp==(unsigned int)buf2[0])
2024-07-12T09:32:40,836         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:32:40,836   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-12T09:32:40,836    1001 |  int errval;
2024-07-12T09:32:40,836         |      ^~~~~~
2024-07-12T09:32:40,839   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-07-12T09:32:40,839   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:40,839    1316 |  if(size3>xfp->buf1size)
2024-07-12T09:32:40,839         |     ~~~~~^~~~~~~~~~~~~~
2024-07-12T09:32:40,841   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:40,841    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-12T09:32:40,841         |                   ^
2024-07-12T09:32:40,844   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-12T09:32:40,844    1289 |  int smallidx,  maxidx, minidx;
2024-07-12T09:32:40,844         |                         ^~~~~~
2024-07-12T09:32:40,844   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-12T09:32:40,844    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-12T09:32:40,844         |                         ^~~~~~
2024-07-12T09:32:40,844   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-12T09:32:40,845    1297 |  int errval=1;
2024-07-12T09:32:40,845         |      ^~~~~~
2024-07-12T09:32:40,846   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-07-12T09:32:40,846   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:40,846    1513 |  if(size3>xfp->buf1size) {
2024-07-12T09:32:40,846         |     ~~~~~^~~~~~~~~~~~~~
2024-07-12T09:32:40,850   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,851    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-07-12T09:32:40,851         |                  ^
2024-07-12T09:32:40,851   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:32:40,851    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-12T09:32:40,851         |                   ^
2024-07-12T09:32:40,854   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:32:40,855    1743 |  if(tmp==(unsigned int)buf2[0])
2024-07-12T09:32:40,855         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:32:40,855   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-12T09:32:40,855    1504 |  int errval=1;
2024-07-12T09:32:40,855         |      ^~~~~~
2024-07-12T09:32:43,076   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-07-12T09:32:43,173   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-07-12T09:32:43,173   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-07-12T09:32:43,173     111 |         if (slen != strlen(version)+1)
2024-07-12T09:32:43,173         |                  ^~
2024-07-12T09:32:43,174   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-07-12T09:32:43,174     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-07-12T09:32:43,174         |                                              ^~
2024-07-12T09:32:43,745   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-07-12T09:32:44,082   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:32:44,082                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:32:44,083                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:32:44,083                    from moleculekit/fileformats/xtc/trr.c:1261:
2024-07-12T09:32:44,083   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:32:44,083      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:32:44,083         |  ^~~~~~~
2024-07-12T09:32:44,687   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-07-12T09:32:44,696   moleculekit/fileformats/xtc/trr.c:16804:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-07-12T09:32:44,696   16804 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-07-12T09:32:44,696         |                                     ^~
2024-07-12T09:33:05,116   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-07-12T09:33:05,116   moleculekit/fileformats/xtc/trr.c:1163:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:05,116    1163 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-12T09:33:05,117         |                                        ^~~~~~~~~~~~~~~
2024-07-12T09:33:05,125   moleculekit/fileformats/xtc/trr.c:14714:7: note: ‘__pyx_v_status’ was declared here
2024-07-12T09:33:05,125   14714 |   int __pyx_v_status;
2024-07-12T09:33:05,125         |       ^~~~~~~~~~~~~~
2024-07-12T09:33:15,447   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-07-12T09:33:15,454   moleculekit/fileformats/xtc/trr.c:12013:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,454   12013 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-07-12T09:33:15,454         |                   ^
2024-07-12T09:33:15,461   moleculekit/fileformats/xtc/trr.c:12009:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,461   12009 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-12T09:33:15,462         |                   ^
2024-07-12T09:33:15,462   moleculekit/fileformats/xtc/trr.c:2485:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,463    2485 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-07-12T09:33:15,463         |                                                                                               ^
2024-07-12T09:33:15,468   moleculekit/fileformats/xtc/trr.c:10545:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-07-12T09:33:15,469   10545 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-07-12T09:33:15,469         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-07-12T09:33:15,475   moleculekit/fileformats/xtc/trr.c:12003:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,475   12003 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-07-12T09:33:15,475         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-12T09:33:15,482   moleculekit/fileformats/xtc/trr.c:11956:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,482   11956 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-07-12T09:33:15,482         |                   ^
2024-07-12T09:33:15,489   moleculekit/fileformats/xtc/trr.c:11952:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,489   11952 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-12T09:33:15,489         |                   ^
2024-07-12T09:33:15,490   moleculekit/fileformats/xtc/trr.c:2485:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,490    2485 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-07-12T09:33:15,490         |                                                                                               ^
2024-07-12T09:33:15,496   moleculekit/fileformats/xtc/trr.c:10561:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-07-12T09:33:15,496   10561 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-07-12T09:33:15,496         |                     ^~~~~~~~~~~~~~~~~~~~
2024-07-12T09:33:15,502   moleculekit/fileformats/xtc/trr.c:11946:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,503   11946 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-07-12T09:33:15,503         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-12T09:33:15,509   moleculekit/fileformats/xtc/trr.c:12345:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,509   12345 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-12T09:33:15,509         |                 ^
2024-07-12T09:33:15,516   moleculekit/fileformats/xtc/trr.c:12341:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,516   12341 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-12T09:33:15,516         |                 ^
2024-07-12T09:33:15,523   moleculekit/fileformats/xtc/trr.c:12186:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,524   12186 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-12T09:33:15,524         |                   ^
2024-07-12T09:33:15,531   moleculekit/fileformats/xtc/trr.c:12182:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,531   12182 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-12T09:33:15,531         |                   ^
2024-07-12T09:33:15,537   moleculekit/fileformats/xtc/trr.c:12238:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,537   12238 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-12T09:33:15,537         |                   ^
2024-07-12T09:33:15,544   moleculekit/fileformats/xtc/trr.c:12234:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:15,545   12234 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-12T09:33:15,545         |                   ^
2024-07-12T09:33:21,973   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:33:22,158   building 'moleculekit.dcd' extension
2024-07-12T09:33:22,159   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-12T09:33:22,161   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-12T09:33:22,162   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-07-12T09:33:22,524   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:33:22,524                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:33:22,524                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:33:22,524                    from moleculekit/fileformats/dcd/dcd.c:1256:
2024-07-12T09:33:22,525   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:33:22,525      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:33:22,525         |  ^~~~~~~
2024-07-12T09:33:23,544   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-07-12T09:33:23,544                    from moleculekit/fileformats/dcd/dcd.c:1262:
2024-07-12T09:33:23,545   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-07-12T09:33:23,545     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-07-12T09:33:23,545         |            ^~~~~~~~~~~~~
2024-07-12T09:33:23,545   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-07-12T09:33:23,546     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-07-12T09:33:23,546         |            ^~~~~~~~~~~~~~
2024-07-12T09:33:23,546   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-07-12T09:33:23,546     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-07-12T09:33:23,546         |            ^~~~~~~~~~~~~~~
2024-07-12T09:33:23,546   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-07-12T09:33:23,546     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-07-12T09:33:23,547         |                   ^~~~~~~~~
2024-07-12T09:33:23,547   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-07-12T09:33:23,547     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-07-12T09:33:23,547         |                   ^~~~~~~~~
2024-07-12T09:33:23,547   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-07-12T09:33:23,547     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-07-12T09:33:23,547         |                   ^~~~~~~~~
2024-07-12T09:33:23,547   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-07-12T09:33:23,548     394 | static int fio_fclose(fio_fd fd) {
2024-07-12T09:33:23,548         |            ^~~~~~~~~~
2024-07-12T09:33:23,548   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-07-12T09:33:23,548     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-07-12T09:33:23,548         |            ^~~~~~~~
2024-07-12T09:33:36,171   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-07-12T09:33:36,171   moleculekit/fileformats/dcd/dcd.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:36,171    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-12T09:33:36,172         |                                        ^~~~~~~~~~~~~~~
2024-07-12T09:33:36,176   moleculekit/fileformats/dcd/dcd.c:8476:7: note: ‘__pyx_v_i’ was declared here
2024-07-12T09:33:36,176    8476 |   int __pyx_v_i;
2024-07-12T09:33:36,176         |       ^~~~~~~~~
2024-07-12T09:33:39,420   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-07-12T09:33:39,604   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-07-12T09:33:39,604   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:33:39,605     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-07-12T09:33:39,605         |                                                       ^~
2024-07-12T09:33:39,605   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:33:39,605     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-07-12T09:33:39,605         |                                                      ^~
2024-07-12T09:33:39,605   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:33:39,606     194 |     if (input_integer[0] != dcdcordmagic)
2024-07-12T09:33:39,606         |                          ^~
2024-07-12T09:33:39,609   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:33:39,609     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-07-12T09:33:39,609         |                                               ^~
2024-07-12T09:33:39,609   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-12T09:33:39,609     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-07-12T09:33:39,609         |                                               ^~
2024-07-12T09:33:39,613   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-07-12T09:33:39,613   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:33:39,613     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-07-12T09:33:39,613         |                       ^~
2024-07-12T09:33:39,614   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-12T09:33:39,614     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-07-12T09:33:39,614         |                                                 ^~
2024-07-12T09:33:39,637   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-07-12T09:33:39,637   At top level:
2024-07-12T09:33:39,637   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-07-12T09:33:39,637      96 | static void swap2_aligned(void *v, long ndata) {
2024-07-12T09:33:39,637         |             ^~~~~~~~~~~~~
2024-07-12T09:33:39,638   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-07-12T09:33:39,638      32 | static void swap2_unaligned(void *v, long ndata) {
2024-07-12T09:33:39,638         |             ^~~~~~~~~~~~~~~
2024-07-12T09:33:39,638   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-07-12T09:33:39,638   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-07-12T09:33:39,638     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-07-12T09:33:39,638         |            ^~~~~~~~~~~~~
2024-07-12T09:33:39,638   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-07-12T09:33:39,639     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-07-12T09:33:39,639         |            ^~~~~~~~~~~~~~
2024-07-12T09:33:40,741   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:33:40,885   building 'moleculekit.binpos' extension
2024-07-12T09:33:40,887   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-12T09:33:40,888   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-12T09:33:40,889   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-07-12T09:33:41,226   In file included from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-12T09:33:41,226                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-12T09:33:41,226                    from /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-12T09:33:41,227                    from moleculekit/fileformats/binpos/binpos.c:1256:
2024-07-12T09:33:41,227   /tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-12T09:33:41,227      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-12T09:33:41,227         |  ^~~~~~~
2024-07-12T09:33:54,720   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-07-12T09:33:54,725   moleculekit/fileformats/binpos/binpos.c:8499:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:54,725    8499 |   if (__pyx_t_1) {
2024-07-12T09:33:54,726         |      ^
2024-07-12T09:33:54,731   moleculekit/fileformats/binpos/binpos.c:7976:7: note: ‘__pyx_v_status’ was declared here
2024-07-12T09:33:54,731    7976 |   int __pyx_v_status;
2024-07-12T09:33:54,731         |       ^~~~~~~~~~~~~~
2024-07-12T09:33:54,732   moleculekit/fileformats/binpos/binpos.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-12T09:33:54,732    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-12T09:33:54,732         |                                        ^~~~~~~~~~~~~~~
2024-07-12T09:33:54,737   moleculekit/fileformats/binpos/binpos.c:7973:7: note: ‘__pyx_v_i’ was declared here
2024-07-12T09:33:54,738    7973 |   int __pyx_v_i;
2024-07-12T09:33:54,738         |       ^~~~~~~~~
2024-07-12T09:33:56,968   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-07-12T09:33:57,272   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:33:57,410   building 'moleculekit.tmalign' extension
2024-07-12T09:33:57,411   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-12T09:33:57,412   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-12T09:33:57,413   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-07-12T09:34:26,921   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-2p4h1i2d/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-07-12T09:34:45,419   In file included from /usr/include/c++/10/vector:72,
2024-07-12T09:34:45,419                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-07-12T09:34:45,419   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-07-12T09:34:45,419   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-07-12T09:34:45,419     426 |       vector<_Tp, _Alloc>::
2024-07-12T09:34:45,419         |       ^~~~~~~~~~~~~~~~~~~
2024-07-12T09:34:45,997   In file included from /usr/include/c++/10/vector:67,
2024-07-12T09:34:45,998                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-07-12T09:34:45,998   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-07-12T09:34:45,998   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-12T09:34:45,998    1198 |    _M_realloc_insert(end(), __x);
2024-07-12T09:34:45,998         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-12T09:34:45,999   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-12T09:34:45,999    1198 |    _M_realloc_insert(end(), __x);
2024-07-12T09:34:45,999         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-12T09:34:46,001   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-12T09:34:46,001    1198 |    _M_realloc_insert(end(), __x);
2024-07-12T09:34:46,001         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-12T09:34:48,433   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-07-12T09:34:48,883   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-07-12T09:34:48,884   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.9.4'
2024-07-12T09:34:48,884   installing to build/bdist.linux-armv7l/wheel
2024-07-12T09:34:48,884   running install
2024-07-12T09:34:48,910   running install_lib
2024-07-12T09:34:48,917   creating build/bdist.linux-armv7l
2024-07-12T09:34:48,918   creating build/bdist.linux-armv7l/wheel
2024-07-12T09:34:48,921   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:48,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:48,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:48,928   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:48,930   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-12T09:34:48,932   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-12T09:34:48,934   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-07-12T09:34:48,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-07-12T09:34:48,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-12T09:34:48,941   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-12T09:34:48,943   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-12T09:34:48,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-12T09:34:48,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-12T09:34:48,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-12T09:34:48,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-12T09:34:48,966   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-12T09:34:48,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-12T09:34:48,972   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-12T09:34:48,973   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-12T09:34:48,976   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-07-12T09:34:48,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-07-12T09:34:48,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-12T09:34:48,998   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-12T09:34:49,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-12T09:34:49,003   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-12T09:34:49,005   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-12T09:34:49,008   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-12T09:34:49,010   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-12T09:34:49,012   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-12T09:34:49,015   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-12T09:34:49,018   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-12T09:34:49,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-12T09:34:49,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-12T09:34:49,052   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-12T09:34:49,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-12T09:34:49,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-12T09:34:49,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-12T09:34:49,082   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-12T09:34:49,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-12T09:34:49,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-12T09:34:49,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-12T09:34:49,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-12T09:34:49,094   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-12T09:34:49,097   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-12T09:34:49,098   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-12T09:34:49,100   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-12T09:34:49,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-12T09:34:49,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-12T09:34:49,106   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-12T09:34:49,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-12T09:34:49,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-12T09:34:49,113   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-12T09:34:49,114   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-12T09:34:49,117   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-12T09:34:49,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,209   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-12T09:34:49,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-12T09:34:49,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-12T09:34:49,243   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,246   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,248   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,252   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,253   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,256   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,262   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,267   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,271   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,274   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,277   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,279   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,281   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-12T09:34:49,284   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-12T09:34:49,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-12T09:34:49,287   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-12T09:34:49,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,330   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-12T09:34:49,331   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-12T09:34:49,333   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmolcdp.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-12T09:34:49,336   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-12T09:34:49,338   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-12T09:34:49,341   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-12T09:34:49,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-12T09:34:49,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-12T09:34:49,348   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-12T09:34:49,349   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-12T09:34:49,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-12T09:34:49,352   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-12T09:34:49,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-12T09:34:49,357   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-07-12T09:34:49,359   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-12T09:34:49,360   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-12T09:34:49,362   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-12T09:34:49,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-12T09:34:49,367   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/BinaryCifReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-12T09:34:49,369   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-12T09:34:49,372   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-07-12T09:34:49,374   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-12T09:34:49,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-12T09:34:49,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-12T09:34:49,379   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-12T09:34:49,380   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-12T09:34:49,382   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-12T09:34:49,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-12T09:34:49,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-12T09:34:49,388   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-12T09:34:49,389   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-07-12T09:34:49,393   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,400   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,403   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,413   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,417   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,419   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,421   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,424   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,426   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,428   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,437   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,439   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,442   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,446   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,448   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,450   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,452   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,454   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,455   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,457   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,459   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,463   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,464   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,466   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,468   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,469   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,471   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,475   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,478   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,482   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,486   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,487   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,491   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,498   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,502   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,504   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,505   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,511   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,514   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,518   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,519   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,523   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,525   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,529   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,533   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,534   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,536   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,538   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,540   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,542   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,550   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,552   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,554   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,556   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,561   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,563   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,572   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,574   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,576   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,581   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,583   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,590   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,594   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,599   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,601   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,615   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,617   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,623   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,624   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,626   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,628   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,631   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,633   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,637   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,643   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,647   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,650   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,658   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,662   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,669   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,671   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,673   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,678   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,683   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,685   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,687   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,691   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,693   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,695   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,697   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,706   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,708   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,711   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-12T09:34:49,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-12T09:34:49,715   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-12T09:34:49,717   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-12T09:34:49,913   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-07-12T09:34:49,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-07-12T09:34:49,916   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,924   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-12T09:34:49,924   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-12T09:34:49,926   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-12T09:34:49,929   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-12T09:34:49,947   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-07-12T09:34:49,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-07-12T09:34:49,954   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-07-12T09:34:49,954   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-07-12T09:34:49,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,958   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,965   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:49,966   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,020   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,024   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-12T09:34:50,026   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-12T09:34:50,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-12T09:34:50,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-12T09:34:50,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,072   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-12T09:34:50,073   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-12T09:34:50,075   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-12T09:34:50,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,094   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,096   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-12T09:34:50,098   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-12T09:34:50,098   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-12T09:34:50,101   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-12T09:34:50,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-12T09:34:50,157   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-12T09:34:50,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-12T09:34:50,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-12T09:34:50,190   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-12T09:34:50,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-12T09:34:50,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-12T09:34:50,229   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-12T09:34:50,233   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-12T09:34:50,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-12T09:34:50,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-12T09:34:50,281   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-12T09:34:50,305   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-12T09:34:50,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-12T09:34:50,309   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-12T09:34:50,328   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,377   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-12T09:34:50,378   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-12T09:34:50,380   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-12T09:34:50,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,428   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-12T09:34:50,429   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-12T09:34:50,450   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-12T09:34:50,452   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,455   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,458   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,481   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,483   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-12T09:34:50,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-12T09:34:50,487   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-12T09:34:50,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-12T09:34:50,491   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-12T09:34:50,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-12T09:34:50,514   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,515   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,517   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,520   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,529   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,533   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,535   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-12T09:34:50,536   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-12T09:34:50,538   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-12T09:34:50,540   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,550   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-12T09:34:50,552   running install_egg_info
2024-07-12T09:34:50,558   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.9.4-py3.9.egg-info
2024-07-12T09:34:50,570   running install_scripts
2024-07-12T09:34:50,616   creating build/bdist.linux-armv7l/wheel/moleculekit-1.9.4.dist-info/WHEEL
2024-07-12T09:34:50,619   creating '/tmp/pip-wheel-79ekpo5w/.tmp-jh7pp5x3/moleculekit-1.9.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-07-12T09:34:50,622   adding 'moleculekit/__init__.py'
2024-07-12T09:34:50,623   adding 'moleculekit/_version.py'
2024-07-12T09:34:50,625   adding 'moleculekit/align.py'
2024-07-12T09:34:50,937   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:51,099   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:51,106   adding 'moleculekit/bondguesser.py'
2024-07-12T09:34:51,351   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:51,360   adding 'moleculekit/config.py'
2024-07-12T09:34:51,619   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:51,792   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:51,798   adding 'moleculekit/dihedral.py'
2024-07-12T09:34:51,799   adding 'moleculekit/distance.py'
2024-07-12T09:34:52,130   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:52,142   adding 'moleculekit/home.py'
2024-07-12T09:34:52,143   adding 'moleculekit/logging.ini'
2024-07-12T09:34:52,158   adding 'moleculekit/molecule.py'
2024-07-12T09:34:52,386   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:52,395   adding 'moleculekit/opm.py'
2024-07-12T09:34:52,397   adding 'moleculekit/periodictable.py'
2024-07-12T09:34:52,398   adding 'moleculekit/pymolgraphics.py'
2024-07-12T09:34:52,400   adding 'moleculekit/rcsb.py'
2024-07-12T09:34:52,401   adding 'moleculekit/rdkitintegration.py'
2024-07-12T09:34:52,415   adding 'moleculekit/readers.py'
2024-07-12T09:34:53,023   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:53,336   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:53,349   adding 'moleculekit/util.py'
2024-07-12T09:34:53,350   adding 'moleculekit/version.py'
2024-07-12T09:34:53,352   adding 'moleculekit/viewer.py'
2024-07-12T09:34:53,353   adding 'moleculekit/vmd_wrapper'
2024-07-12T09:34:53,355   adding 'moleculekit/vmdgraphics.py'
2024-07-12T09:34:53,357   adding 'moleculekit/vmdviewer.py'
2024-07-12T09:34:53,611   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:53,626   adding 'moleculekit/writers.py'
2024-07-12T09:34:53,895   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:53,905   adding 'moleculekit/atomselect/__init__.py'
2024-07-12T09:34:53,909   adding 'moleculekit/atomselect/analyze.py'
2024-07-12T09:34:53,911   adding 'moleculekit/atomselect/atomselect.py'
2024-07-12T09:34:53,913   adding 'moleculekit/atomselect/languageparser.py'
2024-07-12T09:34:54,018   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-07-12T09:34:54,029   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-07-12T09:34:54,144   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-07-12T09:34:54,153   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-07-12T09:34:54,244   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-07-12T09:34:54,253   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-07-12T09:34:54,358   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-07-12T09:34:54,368   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-07-12T09:34:54,370   adding 'moleculekit/fileformats/__init__.py'
2024-07-12T09:34:54,375   adding 'moleculekit/fileformats/netcdf.py'
2024-07-12T09:34:54,377   adding 'moleculekit/fileformats/utils.py'
2024-07-12T09:34:54,440   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-07-12T09:34:54,448   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-07-12T09:34:54,449   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-07-12T09:34:54,451   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-07-12T09:34:54,452   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-07-12T09:34:54,458   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-07-12T09:34:54,460   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-07-12T09:34:54,525   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-07-12T09:34:54,533   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-07-12T09:34:54,534   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-07-12T09:34:54,536   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-07-12T09:34:54,538   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-07-12T09:34:54,540   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-07-12T09:34:54,541   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-07-12T09:34:54,546   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-07-12T09:34:54,552   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-07-12T09:34:54,649   adding 'moleculekit/fileformats/xtc/trr.c'
2024-07-12T09:34:54,660   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-07-12T09:34:54,662   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-07-12T09:34:54,663   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-07-12T09:34:54,754   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-07-12T09:34:54,763   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-07-12T09:34:54,764   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-07-12T09:34:54,766   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-07-12T09:34:54,767   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-07-12T09:34:54,770   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-07-12T09:34:54,772   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-07-12T09:34:54,773   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-07-12T09:34:54,774   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-07-12T09:34:54,776   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-07-12T09:34:54,783   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-07-12T09:34:54,785   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-07-12T09:34:54,786   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-07-12T09:34:54,789   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-07-12T09:34:54,791   adding 'moleculekit/interactions/__init__.py'
2024-07-12T09:34:55,076   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:55,346   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:55,358   adding 'moleculekit/interactions/interactions.py'
2024-07-12T09:34:55,642   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:55,932   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-07-12T09:34:56,035   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-07-12T09:34:56,044   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-07-12T09:34:56,137   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-07-12T09:34:56,146   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-07-12T09:34:56,239   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-07-12T09:34:56,249   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-07-12T09:34:56,342   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-07-12T09:34:56,351   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-07-12T09:34:56,440   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-07-12T09:34:56,449   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-07-12T09:34:56,450   adding 'moleculekit/pdbx/__init__.py'
2024-07-12T09:34:56,453   adding 'moleculekit/pdbx/reader/BinaryCifReader.py'
2024-07-12T09:34:56,457   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-07-12T09:34:56,460   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-07-12T09:34:56,462   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-07-12T09:34:56,463   adding 'moleculekit/pdbx/reader/__init__.py'
2024-07-12T09:34:56,465   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-07-12T09:34:56,467   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-07-12T09:34:56,468   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-07-12T09:34:56,469   adding 'moleculekit/pdbx/tests/__init__.py'
2024-07-12T09:34:56,471   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-07-12T09:34:56,473   adding 'moleculekit/pdbx/writer/__init__.py'
2024-07-12T09:34:56,474   adding 'moleculekit/ply/__init__.py'
2024-07-12T09:34:56,478   adding 'moleculekit/ply/lex.py'
2024-07-12T09:34:56,490   adding 'moleculekit/ply/yacc.py'
2024-07-12T09:34:56,493   adding 'moleculekit/projections/__init__.py'
2024-07-12T09:34:56,495   adding 'moleculekit/projections/metriccoordinate.py'
2024-07-12T09:34:56,498   adding 'moleculekit/projections/metricdihedral.py'
2024-07-12T09:34:56,502   adding 'moleculekit/projections/metricdistance.py'
2024-07-12T09:34:56,504   adding 'moleculekit/projections/metricfluctuation.py'
2024-07-12T09:34:56,506   adding 'moleculekit/projections/metricgyration.py'
2024-07-12T09:34:56,510   adding 'moleculekit/projections/metricplumed2.py'
2024-07-12T09:34:56,512   adding 'moleculekit/projections/metricrmsd.py'
2024-07-12T09:34:56,514   adding 'moleculekit/projections/metricsasa.py'
2024-07-12T09:34:56,516   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-07-12T09:34:56,517   adding 'moleculekit/projections/metricshell.py'
2024-07-12T09:34:56,519   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-07-12T09:34:56,521   adding 'moleculekit/projections/metrictmscore.py'
2024-07-12T09:34:56,522   adding 'moleculekit/projections/projection.py'
2024-07-12T09:34:56,523   adding 'moleculekit/projections/util.py'
2024-07-12T09:34:56,525   adding 'moleculekit/share/ALA.cif'
2024-07-12T09:34:56,527   adding 'moleculekit/share/backbone.cif'
2024-07-12T09:34:57,835   adding 'moleculekit/share/opm_sequences.json'
2024-07-12T09:34:57,921   adding 'moleculekit/share/atomselect/atomselect.json'
2024-07-12T09:34:57,926   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-07-12T09:34:57,927   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-07-12T09:34:57,928   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-07-12T09:34:57,930   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-07-12T09:34:57,931   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-07-12T09:34:57,932   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-07-12T09:34:57,934   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-07-12T09:34:57,935   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-07-12T09:34:57,936   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-07-12T09:34:57,937   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-07-12T09:34:57,939   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-07-12T09:34:57,940   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-07-12T09:34:57,942   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-07-12T09:34:57,943   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-07-12T09:34:57,944   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-07-12T09:34:57,945   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-07-12T09:34:57,947   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-07-12T09:34:57,948   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-07-12T09:34:57,949   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-07-12T09:34:57,951   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-07-12T09:34:57,952   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-07-12T09:34:57,953   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-07-12T09:34:57,955   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-07-12T09:34:57,956   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-07-12T09:34:57,957   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-07-12T09:34:57,958   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-07-12T09:34:57,960   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-07-12T09:34:57,961   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-07-12T09:34:57,962   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-07-12T09:34:57,963   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-07-12T09:34:57,965   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-07-12T09:34:57,966   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-07-12T09:34:57,967   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-07-12T09:34:57,969   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-07-12T09:34:57,970   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-07-12T09:34:57,971   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-07-12T09:34:57,973   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-07-12T09:34:57,974   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-07-12T09:34:57,975   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-07-12T09:34:57,977   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-07-12T09:34:57,978   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-07-12T09:34:57,979   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-07-12T09:34:57,981   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-07-12T09:34:57,982   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-07-12T09:34:57,983   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-07-12T09:34:57,985   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-07-12T09:34:57,986   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-07-12T09:34:57,987   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-07-12T09:34:57,989   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-07-12T09:34:57,990   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-07-12T09:34:57,991   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-07-12T09:34:57,993   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-07-12T09:34:57,994   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-07-12T09:34:57,995   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-07-12T09:34:57,996   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-07-12T09:34:57,998   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-07-12T09:34:57,999   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-07-12T09:34:58,000   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-07-12T09:34:58,001   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-07-12T09:34:58,002   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-07-12T09:34:58,004   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-07-12T09:34:58,005   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-07-12T09:34:58,006   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-07-12T09:34:58,008   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-07-12T09:34:58,009   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-07-12T09:34:58,010   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-07-12T09:34:58,011   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-07-12T09:34:58,013   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-07-12T09:34:58,014   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-07-12T09:34:58,015   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-07-12T09:34:58,017   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-07-12T09:34:58,018   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-07-12T09:34:58,019   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-07-12T09:34:58,021   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-07-12T09:34:58,022   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-07-12T09:34:58,023   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-07-12T09:34:58,024   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-07-12T09:34:58,025   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-07-12T09:34:58,027   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-07-12T09:34:58,028   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-07-12T09:34:58,029   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-07-12T09:34:58,031   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-07-12T09:34:58,032   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-07-12T09:34:58,033   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-07-12T09:34:58,035   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-07-12T09:34:58,036   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-07-12T09:34:58,037   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-07-12T09:34:58,038   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-07-12T09:34:58,040   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-07-12T09:34:58,041   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-07-12T09:34:58,043   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-07-12T09:34:58,044   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-07-12T09:34:58,045   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-07-12T09:34:58,046   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-07-12T09:34:58,048   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-07-12T09:34:58,049   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-07-12T09:34:58,050   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-07-12T09:34:58,051   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-07-12T09:34:58,053   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-07-12T09:34:58,054   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-07-12T09:34:58,055   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-07-12T09:34:58,057   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-07-12T09:34:58,058   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-07-12T09:34:58,059   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-07-12T09:34:58,061   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-07-12T09:34:58,062   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-07-12T09:34:58,063   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-07-12T09:34:58,065   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-07-12T09:34:58,066   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-07-12T09:34:58,067   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-07-12T09:34:58,069   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-07-12T09:34:58,070   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-07-12T09:34:58,071   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-07-12T09:34:58,073   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-07-12T09:34:58,074   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-07-12T09:34:58,075   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-07-12T09:34:58,077   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-07-12T09:34:58,078   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-07-12T09:34:58,079   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-07-12T09:34:58,081   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-07-12T09:34:58,082   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-07-12T09:34:58,083   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-07-12T09:34:58,084   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-07-12T09:34:58,086   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-07-12T09:34:58,087   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-07-12T09:34:58,088   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-07-12T09:34:58,089   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-07-12T09:34:58,091   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-07-12T09:34:58,092   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-07-12T09:34:58,093   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-07-12T09:34:58,095   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-07-12T09:34:58,096   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-07-12T09:34:58,097   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-07-12T09:34:58,099   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-07-12T09:34:58,100   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-07-12T09:34:58,101   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-07-12T09:34:58,102   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-07-12T09:34:58,104   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-07-12T09:34:58,105   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-07-12T09:34:58,106   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-07-12T09:34:58,107   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-07-12T09:34:58,109   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-07-12T09:34:58,110   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-07-12T09:34:58,111   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-07-12T09:34:58,112   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-07-12T09:34:58,114   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-07-12T09:34:58,115   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-07-12T09:34:58,116   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-07-12T09:34:58,117   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-07-12T09:34:58,119   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-07-12T09:34:58,120   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-07-12T09:34:58,121   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-07-12T09:34:58,122   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-07-12T09:34:58,124   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-07-12T09:34:58,125   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-07-12T09:34:58,127   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-07-12T09:34:58,128   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-07-12T09:34:58,129   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-07-12T09:34:58,130   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-07-12T09:34:58,132   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-07-12T09:34:58,133   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-07-12T09:34:58,134   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-07-12T09:34:58,135   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-07-12T09:34:58,137   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-07-12T09:34:58,138   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-07-12T09:34:58,139   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-07-12T09:34:58,141   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-07-12T09:34:58,142   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-07-12T09:34:58,144   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-07-12T09:34:58,145   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-07-12T09:34:58,146   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-07-12T09:34:58,147   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-07-12T09:34:58,149   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-07-12T09:34:58,150   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-07-12T09:34:58,151   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-07-12T09:34:58,153   adding 'moleculekit/smallmol/__init__.py'
2024-07-12T09:34:58,159   adding 'moleculekit/smallmol/smallmol.py'
2024-07-12T09:34:58,161   adding 'moleculekit/smallmol/smallmolcdp.py'
2024-07-12T09:34:58,163   adding 'moleculekit/smallmol/smallmollib.py'
2024-07-12T09:34:58,165   adding 'moleculekit/smallmol/test_smallmol.py'
2024-07-12T09:34:58,166   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-07-12T09:34:58,168   adding 'moleculekit/smallmol/util.py'
2024-07-12T09:34:58,170   adding 'moleculekit/smallmol/tools/__init__.py'
2024-07-12T09:34:58,172   adding 'moleculekit/smallmol/tools/clustering.py'
2024-07-12T09:34:58,174   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-07-12T09:34:58,176   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-07-12T09:34:58,267   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-07-12T09:34:58,276   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-07-12T09:34:58,278   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-07-12T09:34:58,280   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-07-12T09:34:58,297   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-07-12T09:34:58,301   adding 'moleculekit/tools/__init__.py'
2024-07-12T09:34:58,303   adding 'moleculekit/tools/atomtyper.py'
2024-07-12T09:34:58,305   adding 'moleculekit/tools/autosegment.py'
2024-07-12T09:34:58,307   adding 'moleculekit/tools/crystalpacking.py'
2024-07-12T09:34:58,311   adding 'moleculekit/tools/detect.py'
2024-07-12T09:34:58,313   adding 'moleculekit/tools/docking.py'
2024-07-12T09:34:58,315   adding 'moleculekit/tools/graphalignment.py'
2024-07-12T09:34:58,317   adding 'moleculekit/tools/hhblitsprofile.py'
2024-07-12T09:34:58,318   adding 'moleculekit/tools/modelling.py'
2024-07-12T09:34:58,320   adding 'moleculekit/tools/moleculechecks.py'
2024-07-12T09:34:58,326   adding 'moleculekit/tools/preparation.py'
2024-07-12T09:34:58,329   adding 'moleculekit/tools/preparation_customres.py'
2024-07-12T09:34:58,331   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-07-12T09:34:58,334   adding 'moleculekit/tools/voxeldescriptors.py'
2024-07-12T09:34:58,336   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-07-12T09:34:58,337   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-07-12T09:34:58,432   adding 'moleculekit/wrapping/wrapping.cpp'
2024-07-12T09:34:58,441   adding 'moleculekit/wrapping/wrapping.pyx'
2024-07-12T09:34:58,444   adding 'moleculekit-1.9.4.dist-info/LICENSE'
2024-07-12T09:34:58,445   adding 'moleculekit-1.9.4.dist-info/METADATA'
2024-07-12T09:34:58,446   adding 'moleculekit-1.9.4.dist-info/WHEEL'
2024-07-12T09:34:58,447   adding 'moleculekit-1.9.4.dist-info/top_level.txt'
2024-07-12T09:34:58,452   adding 'moleculekit-1.9.4.dist-info/RECORD'
2024-07-12T09:34:58,613   removing build/bdist.linux-armv7l/wheel
2024-07-12T09:34:58,916   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-07-12T09:34:59,218   Created wheel for moleculekit: filename=moleculekit-1.9.4-cp39-cp39-linux_armv7l.whl size=14933120 sha256=9dfee3fa315ea38ce8c2b0292f2ffaf6e5142dde58b0b9e14d83d671cdf78b60
2024-07-12T09:34:59,219   Stored in directory: /tmp/pip-ephem-wheel-cache-2kfbnjk6/wheels/21/08/3d/80e19427a87437db45638ccf9ae436074e12fd59a75a5903f2
2024-07-12T09:34:59,248 Successfully built moleculekit
2024-07-12T09:34:59,600 Removed build tracker: '/tmp/pip-build-tracker-uoftzotn'