2024-07-12T12:32:06,121 Created temporary directory: /tmp/pip-build-tracker-dnuqf8gi 2024-07-12T12:32:06,123 Initialized build tracking at /tmp/pip-build-tracker-dnuqf8gi 2024-07-12T12:32:06,123 Created build tracker: /tmp/pip-build-tracker-dnuqf8gi 2024-07-12T12:32:06,123 Entered build tracker: /tmp/pip-build-tracker-dnuqf8gi 2024-07-12T12:32:06,124 Created temporary directory: /tmp/pip-wheel-97abo511 2024-07-12T12:32:06,127 Created temporary directory: /tmp/pip-ephem-wheel-cache-avw1zs5e 2024-07-12T12:32:06,149 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-12T12:32:06,153 2 location(s) to search for versions of kssdtree: 2024-07-12T12:32:06,153 * https://pypi.org/simple/kssdtree/ 2024-07-12T12:32:06,153 * https://www.piwheels.org/simple/kssdtree/ 2024-07-12T12:32:06,153 Fetching project page and analyzing links: https://pypi.org/simple/kssdtree/ 2024-07-12T12:32:06,154 Getting page https://pypi.org/simple/kssdtree/ 2024-07-12T12:32:06,156 Found index url https://pypi.org/simple/ 2024-07-12T12:32:06,369 Fetched page https://pypi.org/simple/kssdtree/ as application/vnd.pypi.simple.v1+json 2024-07-12T12:32:06,372 Found link https://files.pythonhosted.org/packages/d5/1e/9e5c5945a44bb40002d1c259f734a531999fa6e87db89fe7c7ddcfc583cc/kssdtree-1.1.1.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.1 2024-07-12T12:32:06,373 Found link https://files.pythonhosted.org/packages/9a/4c/6516f734f5860e4b30f9091aaac5811663bfae72c4de4ae6566c89192767/kssdtree-1.1.2.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.2 2024-07-12T12:32:06,373 Found link https://files.pythonhosted.org/packages/a4/cd/f2954686c636e853cc3fda197c459195377b78288874cf7d68218a8bdbf4/kssdtree-1.1.3.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.3 2024-07-12T12:32:06,374 Found link https://files.pythonhosted.org/packages/20/ea/b0301924e3f7d367cbb7b8da66837dba9af2a332bf56ed35e03a33faee76/kssdtree-1.1.4.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.4 2024-07-12T12:32:06,374 Found link https://files.pythonhosted.org/packages/41/65/ed35110b84bc0dd02b9add0104f10160754d2ea0882191767d512146a884/kssdtree-1.1.6.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.6 2024-07-12T12:32:06,375 Found link https://files.pythonhosted.org/packages/cd/4b/d886cbcc573ff0969da7d9c756049925b86141e60ee6708dfbbe0644d008/kssdtree-1.1.7.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.7 2024-07-12T12:32:06,376 Found link https://files.pythonhosted.org/packages/7e/8a/a62c8adc92df69ab8cb242827ee64a3e2b6d5c89b83425785dd00605af17/kssdtree-1.1.8.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.8 2024-07-12T12:32:06,377 Found link https://files.pythonhosted.org/packages/da/db/e458cca6427752c05428d2378ccdee631d32f760174fdaba65f73125e71b/kssdtree-1.1.9.tar.gz (from https://pypi.org/simple/kssdtree/), version: 1.1.9 2024-07-12T12:32:06,377 Found link https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz (from https://pypi.org/simple/kssdtree/), version: 2.0.0 2024-07-12T12:32:06,378 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdtree/ 2024-07-12T12:32:06,379 Getting page https://www.piwheels.org/simple/kssdtree/ 2024-07-12T12:32:06,380 Found index url https://www.piwheels.org/simple/ 2024-07-12T12:32:06,577 Fetched page https://www.piwheels.org/simple/kssdtree/ as text/html 2024-07-12T12:32:06,587 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp311-cp311-linux_armv6l.whl#sha256=d4c397f5fcb0af48dbb11b9fb7d7b399cc180d65355b794a8fcc7327e9a7dde1 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,588 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp311-cp311-linux_armv7l.whl#sha256=d4c397f5fcb0af48dbb11b9fb7d7b399cc180d65355b794a8fcc7327e9a7dde1 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,589 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp39-cp39-linux_armv6l.whl#sha256=ab11dc15aca2923fe0d60bf11deb134bed4df89280b4ce40ca8e9bf3ca46b168 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,589 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.9-cp39-cp39-linux_armv7l.whl#sha256=ab11dc15aca2923fe0d60bf11deb134bed4df89280b4ce40ca8e9bf3ca46b168 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,590 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp39-cp39-linux_armv6l.whl#sha256=6b3f5b0e827056c7b589f4fb02c353408efa5892ef4df1c8a54b4cb30331754a (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,590 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp39-cp39-linux_armv7l.whl#sha256=6b3f5b0e827056c7b589f4fb02c353408efa5892ef4df1c8a54b4cb30331754a (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,591 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,591 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=717afc6606ad3045caac8f3f1cd01a37edd2f01f1cc38bc1bc6c3320882bd392 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,592 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,592 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=388a8dabd657ea83e6d22b52300337c74e9d84e506806cfd4d2a76eb98777e17 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,593 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,593 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=e1df896451d30c12e01aceb3eb91f0f7dfe0ee6f16fd66864fdefbc21cc54856 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,594 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv6l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,594 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp311-cp311-linux_armv7l.whl#sha256=0901b6cf3efb240d5d32b1e88a8863f28e2986a2c0749886421c643b98a4aec2 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,595 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv6l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,595 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.6-cp39-cp39-linux_armv7l.whl#sha256=9defb70b5162efc2c0eb6e415a7e37c604aa9b248a006af86af8f59a3bce5d2b (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,596 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv6l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,597 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp37-cp37m-linux_armv7l.whl#sha256=ffef4ae0f634dd977cc2ec6798b9f36f73d788aca27bb7199f552d5513c34413 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,597 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,598 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=64b685362c3f9027bfeafdffb6a5d58c349a76fd551eeb7b98de146827463e75 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,598 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,599 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=34527068d84569095aefee41a353c5dfc0dfa55b68097890da9a1eca2ee9b726 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,599 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,599 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=6b76f3b3f532934ad49a829e7bf8176af580f4687f1491c49c3f571bf081f961 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,600 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv6l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,600 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp37-cp37m-linux_armv7l.whl#sha256=d179f6c6c0ad4e0f06950e1609118b065b3476c47446325f6614bdbef5ede0d0 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,601 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,602 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=6df2298fa80eefa823153fa0b9db67e35da72da7f88c5949f4f637872ff22c3b (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,602 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,603 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=146b572fde14b0d0770e1c1cd90870ad6db4af293ade814fed7a49e3857f1444 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,603 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv6l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,604 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp37-cp37m-linux_armv7l.whl#sha256=8c0cc1974033765d6eeefdb635a506385b5f38e00361bd6de47ff1a83b07e12a (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,604 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,605 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=9f3fe3d3b4b4bde8b34a8f964ebde72f1efcc7833b9a0b34f6b9c8ff3ed595db (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,606 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv6l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,606 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp311-cp311-linux_armv7l.whl#sha256=29b8e7f4a3e60084db855e6d587231253771ad57184a3265922d659512e136fb (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,606 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,607 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=34b00b40f17a95b2cc5cbabd880acc2c56996457b0acd265cace6966c10b9575 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,607 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,608 Skipping link: No binaries permitted for kssdtree: https://www.piwheels.org/simple/kssdtree/kssdtree-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04471408d60c00f568404b1ab01ca89567b36a1aa50ef6041aceef07ed1e45f4 (from https://www.piwheels.org/simple/kssdtree/) 2024-07-12T12:32:06,609 Skipping link: not a file: https://www.piwheels.org/simple/kssdtree/ 2024-07-12T12:32:06,609 Skipping link: not a file: https://pypi.org/simple/kssdtree/ 2024-07-12T12:32:06,630 Given no hashes to check 1 links for project 'kssdtree': discarding no candidates 2024-07-12T12:32:06,649 Collecting kssdtree==2.0.0 2024-07-12T12:32:06,652 Created temporary directory: /tmp/pip-unpack-0bxpcr6y 2024-07-12T12:32:06,863 Downloading kssdtree-2.0.0.tar.gz (112 kB) 2024-07-12T12:32:07,074 Added kssdtree==2.0.0 from https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-dnuqf8gi' 2024-07-12T12:32:07,076 Running setup.py (path:/tmp/pip-wheel-97abo511/kssdtree_5e81b6b42b0e41ba89ef4526e756f3c0/setup.py) egg_info for package kssdtree 2024-07-12T12:32:07,077 Created temporary directory: /tmp/pip-pip-egg-info-5zokoya0 2024-07-12T12:32:07,078 Preparing metadata (setup.py): started 2024-07-12T12:32:07,079 Running command python setup.py egg_info 2024-07-12T12:32:08,176 running egg_info 2024-07-12T12:32:08,177 creating /tmp/pip-pip-egg-info-5zokoya0/kssdtree.egg-info 2024-07-12T12:32:08,203 writing /tmp/pip-pip-egg-info-5zokoya0/kssdtree.egg-info/PKG-INFO 2024-07-12T12:32:08,206 writing dependency_links to /tmp/pip-pip-egg-info-5zokoya0/kssdtree.egg-info/dependency_links.txt 2024-07-12T12:32:08,208 writing requirements to /tmp/pip-pip-egg-info-5zokoya0/kssdtree.egg-info/requires.txt 2024-07-12T12:32:08,209 writing top-level names to /tmp/pip-pip-egg-info-5zokoya0/kssdtree.egg-info/top_level.txt 2024-07-12T12:32:08,211 writing manifest file '/tmp/pip-pip-egg-info-5zokoya0/kssdtree.egg-info/SOURCES.txt' 2024-07-12T12:32:08,319 reading manifest file '/tmp/pip-pip-egg-info-5zokoya0/kssdtree.egg-info/SOURCES.txt' 2024-07-12T12:32:08,320 reading manifest template 'MANIFEST.in' 2024-07-12T12:32:08,337 writing manifest file '/tmp/pip-pip-egg-info-5zokoya0/kssdtree.egg-info/SOURCES.txt' 2024-07-12T12:32:08,455 Preparing metadata (setup.py): finished with status 'done' 2024-07-12T12:32:08,459 Source in /tmp/pip-wheel-97abo511/kssdtree_5e81b6b42b0e41ba89ef4526e756f3c0 has version 2.0.0, which satisfies requirement kssdtree==2.0.0 from https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz 2024-07-12T12:32:08,460 Removed kssdtree==2.0.0 from https://files.pythonhosted.org/packages/9d/47/017180a30e73e421372377cbe6d01c5e51a5108ea2177f20ccd7d283f8d1/kssdtree-2.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-dnuqf8gi' 2024-07-12T12:32:08,464 Created temporary directory: /tmp/pip-unpack-0jfc6rgr 2024-07-12T12:32:08,465 Created temporary directory: /tmp/pip-unpack-8tesh85u 2024-07-12T12:32:08,470 Building wheels for collected packages: kssdtree 2024-07-12T12:32:08,474 Created temporary directory: /tmp/pip-wheel-031ab_mp 2024-07-12T12:32:08,475 Building wheel for kssdtree (setup.py): started 2024-07-12T12:32:08,476 Destination directory: /tmp/pip-wheel-031ab_mp 2024-07-12T12:32:08,477 Running command python setup.py bdist_wheel 2024-07-12T12:32:09,554 running bdist_wheel 2024-07-12T12:32:09,651 running build 2024-07-12T12:32:09,652 running build_py 2024-07-12T12:32:09,678 creating build 2024-07-12T12:32:09,679 creating build/lib.linux-armv7l-cpython-311 2024-07-12T12:32:09,680 copying kssdtree.py -> build/lib.linux-armv7l-cpython-311 2024-07-12T12:32:09,683 copying toolutils.py -> build/lib.linux-armv7l-cpython-311 2024-07-12T12:32:09,685 running egg_info 2024-07-12T12:32:09,745 writing kssdtree.egg-info/PKG-INFO 2024-07-12T12:32:09,748 writing dependency_links to kssdtree.egg-info/dependency_links.txt 2024-07-12T12:32:09,749 writing requirements to kssdtree.egg-info/requires.txt 2024-07-12T12:32:09,750 writing top-level names to kssdtree.egg-info/top_level.txt 2024-07-12T12:32:09,777 reading manifest file 'kssdtree.egg-info/SOURCES.txt' 2024-07-12T12:32:09,780 reading manifest template 'MANIFEST.in' 2024-07-12T12:32:09,801 writing manifest file 'kssdtree.egg-info/SOURCES.txt' 2024-07-12T12:32:09,803 running build_ext 2024-07-12T12:32:10,267 building 'kssd' extension 2024-07-12T12:32:10,268 creating build/temp.linux-armv7l-cpython-311 2024-07-12T12:32:10,269 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c co2mco.c -o build/temp.linux-armv7l-cpython-311/co2mco.o -fopenmp 2024-07-12T12:32:10,467 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2024-07-12T12:32:10,468 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-07-12T12:32:10,468 109 | for (unsigned int i = 0; i < comp_num; i++) { 2024-07-12T12:32:10,469 | ^ 2024-07-12T12:32:10,471 co2mco.c: In function ‘co2unitllmco’: 2024-07-12T12:32:10,472 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-07-12T12:32:10,473 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2024-07-12T12:32:10,474 | ^ 2024-07-12T12:32:11,183 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_composite.c -o build/temp.linux-armv7l-cpython-311/command_composite.o -fopenmp 2024-07-12T12:32:11,560 command_composite.c: In function ‘get_species_abundance’: 2024-07-12T12:32:11,561 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-07-12T12:32:11,561 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2024-07-12T12:32:11,562 | ^~ 2024-07-12T12:32:11,562 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2024-07-12T12:32:11,563 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2024-07-12T12:32:11,563 | ^~ 2024-07-12T12:32:11,564 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:11,564 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-07-12T12:32:11,565 | ^ 2024-07-12T12:32:11,565 command_composite.c:64:31: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:11,566 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-07-12T12:32:11,566 | ^~~~~~~~~~ 2024-07-12T12:32:11,567 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-07-12T12:32:11,567 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2024-07-12T12:32:11,568 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:11,569 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:11,569 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-07-12T12:32:11,570 | ^ 2024-07-12T12:32:11,570 command_composite.c:70:31: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:11,571 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-07-12T12:32:11,572 | ^~~~~~~~~~ 2024-07-12T12:32:11,573 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-07-12T12:32:11,573 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2024-07-12T12:32:11,574 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:11,575 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:11,576 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-07-12T12:32:11,576 | ^ 2024-07-12T12:32:11,577 command_composite.c:76:31: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:11,577 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-07-12T12:32:11,578 | ^~~~~~~~~~ 2024-07-12T12:32:11,579 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-07-12T12:32:11,579 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2024-07-12T12:32:11,580 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:11,581 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:11,582 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-07-12T12:32:11,582 | ^ 2024-07-12T12:32:11,583 command_composite.c:82:31: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:11,584 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-07-12T12:32:11,584 | ^~~~~~~~~~ 2024-07-12T12:32:11,585 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2024-07-12T12:32:11,585 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2024-07-12T12:32:11,586 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:11,586 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:11,587 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-07-12T12:32:11,587 | ^ 2024-07-12T12:32:11,588 command_composite.c:88:31: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:11,588 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-07-12T12:32:11,589 | ^~~~~~~~~~~~ 2024-07-12T12:32:11,589 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2024-07-12T12:32:11,590 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2024-07-12T12:32:11,590 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:11,830 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist.c -o build/temp.linux-armv7l-cpython-311/command_dist.o -fopenmp 2024-07-12T12:32:12,058 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-07-12T12:32:12,059 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-07-12T12:32:12,060 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-07-12T12:32:12,061 | ~~^ 2024-07-12T12:32:12,061 | | 2024-07-12T12:32:12,062 | long unsigned int 2024-07-12T12:32:12,063 | %u 2024-07-12T12:32:12,063 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-07-12T12:32:12,064 | ~~~~~~~ 2024-07-12T12:32:12,065 | | 2024-07-12T12:32:12,065 | size_t {aka unsigned int} 2024-07-12T12:32:12,066 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-07-12T12:32:12,067 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-07-12T12:32:12,067 | ~~^ 2024-07-12T12:32:12,068 | | 2024-07-12T12:32:12,068 | long unsigned int 2024-07-12T12:32:12,069 | %u 2024-07-12T12:32:12,070 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-07-12T12:32:12,071 679 | maplength, (size_t) b * unitsz_distf_mapped); 2024-07-12T12:32:12,072 | ~~~~~~~~~ 2024-07-12T12:32:12,072 | | 2024-07-12T12:32:12,073 | size_t {aka unsigned int} 2024-07-12T12:32:12,073 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-07-12T12:32:12,073 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-07-12T12:32:12,074 | ~~^ 2024-07-12T12:32:12,074 | | 2024-07-12T12:32:12,075 | long unsigned int 2024-07-12T12:32:12,075 | %u 2024-07-12T12:32:12,076 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-07-12T12:32:12,076 679 | maplength, (size_t) b * unitsz_distf_mapped); 2024-07-12T12:32:12,076 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:12,077 | | 2024-07-12T12:32:12,077 | unsigned int 2024-07-12T12:32:12,078 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-07-12T12:32:12,078 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2024-07-12T12:32:12,079 | ^ 2024-07-12T12:32:12,079 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-07-12T12:32:12,080 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-07-12T12:32:12,080 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-07-12T12:32:12,081 | ~~^ ~~~~~~~ 2024-07-12T12:32:12,082 | | | 2024-07-12T12:32:12,082 | long unsigned int size_t {aka unsigned int} 2024-07-12T12:32:12,083 | %u 2024-07-12T12:32:12,083 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-07-12T12:32:12,084 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-07-12T12:32:12,084 | ~~^ 2024-07-12T12:32:12,085 | | 2024-07-12T12:32:12,086 | long unsigned int 2024-07-12T12:32:12,086 | %u 2024-07-12T12:32:12,087 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-07-12T12:32:12,088 | ~~~~~~~~~ 2024-07-12T12:32:12,088 | | 2024-07-12T12:32:12,089 | size_t {aka unsigned int} 2024-07-12T12:32:12,090 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-07-12T12:32:12,091 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2024-07-12T12:32:12,091 | ~~^ 2024-07-12T12:32:12,092 | | 2024-07-12T12:32:12,092 | long unsigned int 2024-07-12T12:32:12,093 | %u 2024-07-12T12:32:12,093 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2024-07-12T12:32:12,094 865 | (size_t) b * unitsz_distf_mapped); 2024-07-12T12:32:12,094 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:12,094 | | 2024-07-12T12:32:12,095 | unsigned int 2024-07-12T12:32:12,095 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2024-07-12T12:32:12,096 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2024-07-12T12:32:12,096 | ^~~~~~~ 2024-07-12T12:32:12,097 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2024-07-12T12:32:12,097 809 | struct stat cbd_fcode_stat; 2024-07-12T12:32:12,098 | ^~~~~~~~~~~~~~ 2024-07-12T12:32:12,099 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2024-07-12T12:32:12,099 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-07-12T12:32:12,100 | ^~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:12,100 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2024-07-12T12:32:12,101 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2024-07-12T12:32:12,102 | ^~~~~~~~~~~~~~~~~ 2024-07-12T12:32:12,102 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-07-12T12:32:12,103 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-07-12T12:32:12,104 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-07-12T12:32:12,105 | ~~^ 2024-07-12T12:32:12,105 | | 2024-07-12T12:32:12,106 | long unsigned int 2024-07-12T12:32:12,106 | %u 2024-07-12T12:32:12,107 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-07-12T12:32:12,108 | ~~~~~~~ 2024-07-12T12:32:12,109 | | 2024-07-12T12:32:12,109 | size_t {aka unsigned int} 2024-07-12T12:32:12,110 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-07-12T12:32:12,111 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-07-12T12:32:12,112 | ~~^ 2024-07-12T12:32:12,113 | | 2024-07-12T12:32:12,113 | long unsigned int 2024-07-12T12:32:12,114 | %u 2024-07-12T12:32:12,114 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-07-12T12:32:12,115 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2024-07-12T12:32:12,115 | ~~~~~~~~~ 2024-07-12T12:32:12,116 | | 2024-07-12T12:32:12,116 | size_t {aka unsigned int} 2024-07-12T12:32:12,117 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2024-07-12T12:32:12,117 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2024-07-12T12:32:12,118 | ~~^ 2024-07-12T12:32:12,118 | | 2024-07-12T12:32:12,119 | long unsigned int 2024-07-12T12:32:12,119 | %u 2024-07-12T12:32:12,120 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2024-07-12T12:32:12,121 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2024-07-12T12:32:12,121 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:12,122 | | 2024-07-12T12:32:12,123 | unsigned int 2024-07-12T12:32:12,124 command_dist.c:1034:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2024-07-12T12:32:12,125 1034 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2024-07-12T12:32:12,125 | ^ 2024-07-12T12:32:12,126 command_dist.c: In function ‘mco_co_dist_core’: 2024-07-12T12:32:12,127 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-07-12T12:32:12,127 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2024-07-12T12:32:12,128 | ^ 2024-07-12T12:32:12,129 command_dist.c: In function ‘koc_dist_print_nobin’: 2024-07-12T12:32:12,129 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-07-12T12:32:12,130 1239 | for (int rid = 0; rid < ref_num; rid++) 2024-07-12T12:32:12,130 | ^ 2024-07-12T12:32:12,131 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-07-12T12:32:12,132 1245 | for (int rid = 0; rid < ref_num; rid++) { 2024-07-12T12:32:12,132 | ^ 2024-07-12T12:32:12,133 command_dist.c: In function ‘dist_print_nobin’: 2024-07-12T12:32:12,134 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-07-12T12:32:12,135 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2024-07-12T12:32:12,136 | ^ 2024-07-12T12:32:12,136 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-07-12T12:32:12,137 1356 | for (int rid = 0; rid < ref_num; rid++) { 2024-07-12T12:32:12,137 | ^ 2024-07-12T12:32:12,138 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-07-12T12:32:12,138 1382 | for (int rid = 0; rid < ref_num; rid++) 2024-07-12T12:32:12,139 | ^ 2024-07-12T12:32:12,495 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2024-07-12T12:32:12,496 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2024-07-12T12:32:12,497 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2024-07-12T12:32:12,497 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:12,498 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2024-07-12T12:32:12,498 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2024-07-12T12:32:12,499 | ^~~~~~~~~~~~ 2024-07-12T12:32:13,331 command_dist.c: In function ‘get_dim_shuffle’: 2024-07-12T12:32:13,331 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2024-07-12T12:32:13,332 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-07-12T12:32:13,333 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:13,334 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2024-07-12T12:32:13,334 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2024-07-12T12:32:13,335 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,229 command_dist.c: In function ‘mco_cbd_co_dist’: 2024-07-12T12:32:14,230 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:14,231 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-07-12T12:32:14,231 | ^~ ~~~~~~~~~ 2024-07-12T12:32:14,232 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-07-12T12:32:14,233 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-07-12T12:32:14,233 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,234 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-07-12T12:32:14,234 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-07-12T12:32:14,235 | ^~~~~~~~~~~~~~~ 2024-07-12T12:32:14,236 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-07-12T12:32:14,236 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-07-12T12:32:14,237 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,237 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-07-12T12:32:14,238 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-07-12T12:32:14,239 | ^~~~~~~~~~~ 2024-07-12T12:32:14,240 command_dist.c:681:38: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:14,241 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-07-12T12:32:14,241 | ^~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,242 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-07-12T12:32:14,242 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-07-12T12:32:14,243 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,243 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-07-12T12:32:14,244 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-07-12T12:32:14,245 | ^~~~~ 2024-07-12T12:32:14,245 command_dist.c:682:32: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:14,246 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-07-12T12:32:14,246 | ^~~~~~~~~~~ 2024-07-12T12:32:14,247 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-07-12T12:32:14,247 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-07-12T12:32:14,248 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,480 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2024-07-12T12:32:14,481 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:14,482 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-07-12T12:32:14,482 | ^~ ~~~~~~~~~ 2024-07-12T12:32:14,483 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-07-12T12:32:14,484 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-07-12T12:32:14,484 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,485 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-07-12T12:32:14,486 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-07-12T12:32:14,486 | ^~~~~~~~~~~~~~~ 2024-07-12T12:32:14,487 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-07-12T12:32:14,488 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-07-12T12:32:14,488 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,489 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-07-12T12:32:14,490 823 | sprintf(distf, "%s/distance.out", distout_dir); 2024-07-12T12:32:14,490 | ^~~~~~~~~~~~~ 2024-07-12T12:32:14,491 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-07-12T12:32:14,491 823 | sprintf(distf, "%s/distance.out", distout_dir); 2024-07-12T12:32:14,492 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,493 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:14,493 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-07-12T12:32:14,494 | ^ 2024-07-12T12:32:14,495 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2024-07-12T12:32:14,496 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-07-12T12:32:14,497 | ^~~~~~~~~~ 2024-07-12T12:32:14,497 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-07-12T12:32:14,498 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2024-07-12T12:32:14,498 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,499 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:14,499 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-07-12T12:32:14,500 | ^ 2024-07-12T12:32:14,501 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2024-07-12T12:32:14,501 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-07-12T12:32:14,502 | ^~~~~~~~~~ 2024-07-12T12:32:14,502 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2024-07-12T12:32:14,503 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2024-07-12T12:32:14,503 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,761 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2024-07-12T12:32:14,762 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:14,763 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-07-12T12:32:14,763 | ^~ ~~~~~~~~~ 2024-07-12T12:32:14,764 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2024-07-12T12:32:14,764 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2024-07-12T12:32:14,765 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,766 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-07-12T12:32:14,766 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-07-12T12:32:14,767 | ^~~~~~~~~~~~~~~ 2024-07-12T12:32:14,768 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2024-07-12T12:32:14,769 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2024-07-12T12:32:14,769 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,770 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-07-12T12:32:14,770 990 | sprintf(distf, "%s/distance.out", distout_dir); 2024-07-12T12:32:14,771 | ^~~~~~~~~~~~~ 2024-07-12T12:32:14,772 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-07-12T12:32:14,772 990 | sprintf(distf, "%s/distance.out", distout_dir); 2024-07-12T12:32:14,773 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,773 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-07-12T12:32:14,774 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-07-12T12:32:14,774 | ^~~~~~~~~~~ 2024-07-12T12:32:14,775 command_dist.c:1022:38: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:14,776 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-07-12T12:32:14,777 | ^~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,777 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2024-07-12T12:32:14,778 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2024-07-12T12:32:14,778 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:14,779 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2024-07-12T12:32:14,779 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-07-12T12:32:14,780 | ^~~~~ 2024-07-12T12:32:14,781 command_dist.c:1023:32: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:14,781 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-07-12T12:32:14,782 | ^~~~~~~~~~~ 2024-07-12T12:32:14,783 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-07-12T12:32:14,783 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2024-07-12T12:32:14,784 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:15,050 command_dist.c: In function ‘combine_queries’: 2024-07-12T12:32:15,052 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-07-12T12:32:15,052 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-07-12T12:32:15,053 | ^ 2024-07-12T12:32:15,054 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-07-12T12:32:15,054 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2024-07-12T12:32:15,055 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:15,056 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-07-12T12:32:15,056 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-07-12T12:32:15,057 | ^ 2024-07-12T12:32:15,058 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-07-12T12:32:15,058 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2024-07-12T12:32:15,059 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:15,060 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:15,060 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-07-12T12:32:15,061 | ^~ ~~~~~~~~ 2024-07-12T12:32:15,062 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2024-07-12T12:32:15,062 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2024-07-12T12:32:15,063 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:15,542 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o -fopenmp 2024-07-12T12:32:15,717 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_set.c -o build/temp.linux-armv7l-cpython-311/command_set.o -fopenmp 2024-07-12T12:32:15,892 command_set.c: In function ‘sketch_operate’: 2024-07-12T12:32:15,893 command_set.c:179:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2024-07-12T12:32:15,893 179 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2024-07-12T12:32:15,894 | ^ 2024-07-12T12:32:15,905 command_set.c: In function ‘combin_subset_pans’: 2024-07-12T12:32:15,906 command_set.c:458:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-07-12T12:32:15,906 458 | free(co_dstat_fpath); 2024-07-12T12:32:15,907 | ^~~~~~~~~~~~~~ 2024-07-12T12:32:15,907 In file included from kssdheaders/global_basic.h:159, 2024-07-12T12:32:15,908 from command_set.c:15: 2024-07-12T12:32:15,908 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-07-12T12:32:15,909 568 | extern void free (void *__ptr) __THROW; 2024-07-12T12:32:15,910 | ~~~~~~^~~~~ 2024-07-12T12:32:15,912 command_set.c: In function ‘grouping_genomes’: 2024-07-12T12:32:15,913 command_set.c:563:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2024-07-12T12:32:15,913 563 | free(co_dstat_fpath); 2024-07-12T12:32:15,914 | ^~~~~~~~~~~~~~ 2024-07-12T12:32:15,915 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2024-07-12T12:32:15,915 568 | extern void free (void *__ptr) __THROW; 2024-07-12T12:32:15,916 | ~~~~~~^~~~~ 2024-07-12T12:32:16,080 command_set.c: In function ‘sketch_union’: 2024-07-12T12:32:16,081 command_set.c:72:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-07-12T12:32:16,082 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-07-12T12:32:16,082 | ^ 2024-07-12T12:32:16,083 command_set.c:72:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-07-12T12:32:16,084 72 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-07-12T12:32:16,084 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,085 command_set.c:83:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,086 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-07-12T12:32:16,087 | ^~ ~~~~~~~~~~~ 2024-07-12T12:32:16,087 command_set.c:83:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,088 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-07-12T12:32:16,089 | ^~~~~~~~~~ 2024-07-12T12:32:16,089 command_set.c:83:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-07-12T12:32:16,090 83 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-07-12T12:32:16,091 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,091 command_set.c:93:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,092 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-07-12T12:32:16,093 | ^~ ~~~~~~~~~~ 2024-07-12T12:32:16,093 command_set.c:93:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,094 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-07-12T12:32:16,095 | ^~~~~~~~~~ 2024-07-12T12:32:16,096 command_set.c:93:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-07-12T12:32:16,096 93 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2024-07-12T12:32:16,097 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,211 command_set.c: In function ‘sketch_operate’: 2024-07-12T12:32:16,212 command_set.c:154:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,213 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-07-12T12:32:16,213 | ^~ ~~~~~~~~~~ 2024-07-12T12:32:16,214 command_set.c:154:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,214 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-07-12T12:32:16,215 | ^~~~~~~~~~ 2024-07-12T12:32:16,215 command_set.c:154:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2024-07-12T12:32:16,216 154 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2024-07-12T12:32:16,216 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,217 command_set.c:156:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,217 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-07-12T12:32:16,218 | ^~ ~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,219 command_set.c:156:29: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,219 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-07-12T12:32:16,220 | ^~~~~~~~~~ 2024-07-12T12:32:16,220 command_set.c:156:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-07-12T12:32:16,221 156 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2024-07-12T12:32:16,222 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,222 command_set.c:166:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,223 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-07-12T12:32:16,224 | ^~ ~~~~~~~~~~~ 2024-07-12T12:32:16,225 command_set.c:166:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,225 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-07-12T12:32:16,226 | ^~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,227 command_set.c:166:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-07-12T12:32:16,227 166 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2024-07-12T12:32:16,228 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,229 command_set.c:170:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,229 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-07-12T12:32:16,230 | ^~ ~~~~~~~~~~~ 2024-07-12T12:32:16,231 command_set.c:170:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,232 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-07-12T12:32:16,232 | ^~~~~~~~~~ 2024-07-12T12:32:16,233 command_set.c:170:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-07-12T12:32:16,234 170 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2024-07-12T12:32:16,234 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,235 command_set.c:175:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,235 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-07-12T12:32:16,236 | ^~ ~~~~~~~~~~~ 2024-07-12T12:32:16,236 command_set.c:175:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,236 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-07-12T12:32:16,237 | ^~~~~~~~~~ 2024-07-12T12:32:16,238 command_set.c:175:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-07-12T12:32:16,238 175 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2024-07-12T12:32:16,239 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,239 command_set.c:188:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,240 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-07-12T12:32:16,240 | ^~ ~~~~~~~~~~~ 2024-07-12T12:32:16,241 command_set.c:188:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,242 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-07-12T12:32:16,242 | ^~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,243 command_set.c:188:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-07-12T12:32:16,243 188 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2024-07-12T12:32:16,244 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,245 command_set.c:193:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-07-12T12:32:16,246 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-07-12T12:32:16,247 | ^ 2024-07-12T12:32:16,247 command_set.c:193:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-07-12T12:32:16,248 193 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-07-12T12:32:16,249 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,387 command_set.c: In function ‘uniq_sketch_union’: 2024-07-12T12:32:16,388 command_set.c:220:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-07-12T12:32:16,388 220 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2024-07-12T12:32:16,389 | ^ 2024-07-12T12:32:16,390 command_set.c:220:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2024-07-12T12:32:16,390 220 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2024-07-12T12:32:16,391 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,392 command_set.c:235:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-07-12T12:32:16,393 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-07-12T12:32:16,393 | ^ 2024-07-12T12:32:16,394 command_set.c:235:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-07-12T12:32:16,395 235 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2024-07-12T12:32:16,396 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,396 command_set.c:248:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,397 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-07-12T12:32:16,398 | ^~ ~~~~~~~~~~~ 2024-07-12T12:32:16,398 command_set.c:248:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,399 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-07-12T12:32:16,399 | ^~~~~~~~~~ 2024-07-12T12:32:16,400 command_set.c:248:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-07-12T12:32:16,401 248 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2024-07-12T12:32:16,401 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,402 command_set.c:260:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,402 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-07-12T12:32:16,403 | ^~ ~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,403 command_set.c:260:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,404 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-07-12T12:32:16,405 | ^~~~~~~~~~ 2024-07-12T12:32:16,405 command_set.c:260:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2024-07-12T12:32:16,406 260 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2024-07-12T12:32:16,406 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,534 command_set.c: In function ‘combin_pans’: 2024-07-12T12:32:16,534 command_set.c:298:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,535 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-07-12T12:32:16,536 | ^~ ~~~~~~~~~~~ 2024-07-12T12:32:16,536 command_set.c:298:25: note: directive argument in the range [0, 1073741823] 2024-07-12T12:32:16,537 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-07-12T12:32:16,538 | ^~~~~~~~~~ 2024-07-12T12:32:16,538 command_set.c:298:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2024-07-12T12:32:16,539 298 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-07-12T12:32:16,540 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,540 command_set.c:301:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,541 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-07-12T12:32:16,542 | ^~ ~~~~~~~~~~ 2024-07-12T12:32:16,542 command_set.c:301:25: note: directive argument in the range [0, 1073741823] 2024-07-12T12:32:16,543 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-07-12T12:32:16,543 | ^~~~~~~~~~ 2024-07-12T12:32:16,544 command_set.c:301:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2024-07-12T12:32:16,545 301 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-07-12T12:32:16,546 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,547 command_set.c:343:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-07-12T12:32:16,547 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-07-12T12:32:16,548 | ^ 2024-07-12T12:32:16,549 command_set.c:343:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-07-12T12:32:16,549 343 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-07-12T12:32:16,550 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,751 command_set.c: In function ‘combin_subset_pans’: 2024-07-12T12:32:16,752 command_set.c:470:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,753 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-07-12T12:32:16,753 | ^~ ~~~~~~~~~~~ 2024-07-12T12:32:16,754 command_set.c:470:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,754 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-07-12T12:32:16,755 | ^~~~~~~~~~ 2024-07-12T12:32:16,755 command_set.c:470:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-07-12T12:32:16,756 470 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-07-12T12:32:16,756 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,756 command_set.c:476:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,757 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-07-12T12:32:16,758 | ^~ ~~~~~~~~~~ 2024-07-12T12:32:16,758 command_set.c:476:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,759 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-07-12T12:32:16,759 | ^~~~~~~~~~ 2024-07-12T12:32:16,760 command_set.c:476:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-07-12T12:32:16,761 476 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-07-12T12:32:16,761 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,762 command_set.c:482:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,763 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-07-12T12:32:16,763 | ^~ ~~~~~~~~~~~ 2024-07-12T12:32:16,764 command_set.c:482:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,765 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-07-12T12:32:16,766 | ^~~~~~~~~~ 2024-07-12T12:32:16,766 command_set.c:482:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-07-12T12:32:16,767 482 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-07-12T12:32:16,768 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,768 command_set.c:513:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:16,769 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-07-12T12:32:16,769 | ^~ ~~~~~~~~~~ 2024-07-12T12:32:16,770 command_set.c:513:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:16,771 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-07-12T12:32:16,772 | ^~~~~~~~~~ 2024-07-12T12:32:16,772 command_set.c:513:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-07-12T12:32:16,773 513 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-07-12T12:32:16,773 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,774 command_set.c:524:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-07-12T12:32:16,774 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-07-12T12:32:16,775 | ^ 2024-07-12T12:32:16,776 command_set.c:524:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-07-12T12:32:16,776 524 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-07-12T12:32:16,777 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:16,998 command_set.c: In function ‘grouping_genomes’: 2024-07-12T12:32:16,999 command_set.c:575:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:17,000 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-07-12T12:32:17,000 | ^~ ~~~~~~~~~~~ 2024-07-12T12:32:17,000 command_set.c:575:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:17,001 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-07-12T12:32:17,001 | ^~~~~~~~~~ 2024-07-12T12:32:17,002 command_set.c:575:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-07-12T12:32:17,003 575 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2024-07-12T12:32:17,003 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:17,004 command_set.c:581:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:17,005 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-07-12T12:32:17,005 | ^~ ~~~~~~~~~~ 2024-07-12T12:32:17,006 command_set.c:581:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:17,006 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-07-12T12:32:17,007 | ^~~~~~~~~~ 2024-07-12T12:32:17,008 command_set.c:581:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-07-12T12:32:17,008 581 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2024-07-12T12:32:17,009 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:17,009 command_set.c:613:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:17,010 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-07-12T12:32:17,010 | ^~ ~~~~~~~~~~~ 2024-07-12T12:32:17,011 command_set.c:613:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:17,012 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-07-12T12:32:17,013 | ^~~~~~~~~~ 2024-07-12T12:32:17,013 command_set.c:613:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2024-07-12T12:32:17,014 613 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2024-07-12T12:32:17,015 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:17,016 command_set.c:635:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2024-07-12T12:32:17,016 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-07-12T12:32:17,017 | ^~ ~~~~~~~~~~ 2024-07-12T12:32:17,018 command_set.c:635:25: note: directive argument in the range [-2147483644, 2147483646] 2024-07-12T12:32:17,018 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-07-12T12:32:17,019 | ^~~~~~~~~~ 2024-07-12T12:32:17,019 command_set.c:635:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2024-07-12T12:32:17,020 635 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2024-07-12T12:32:17,020 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:17,021 command_set.c:646:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2024-07-12T12:32:17,021 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-07-12T12:32:17,022 | ^ 2024-07-12T12:32:17,022 command_set.c:646:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2024-07-12T12:32:17,023 646 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2024-07-12T12:32:17,023 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:17,300 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-311/command_shuffle.o -fopenmp 2024-07-12T12:32:17,616 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c global_basic.c -o build/temp.linux-armv7l-cpython-311/global_basic.o -fopenmp 2024-07-12T12:32:17,783 global_basic.c: In function ‘organize_infile_list’: 2024-07-12T12:32:17,783 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2024-07-12T12:32:17,784 195 | while (isspace(*buf)) buf++; 2024-07-12T12:32:17,785 | ^~~~~~~ 2024-07-12T12:32:17,785 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2024-07-12T12:32:17,786 34 | #include 2024-07-12T12:32:17,787 +++ |+#include 2024-07-12T12:32:17,787 35 | 2024-07-12T12:32:17,788 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-07-12T12:32:17,789 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-07-12T12:32:17,789 | ~~^ 2024-07-12T12:32:17,790 | | 2024-07-12T12:32:17,791 | long unsigned int 2024-07-12T12:32:17,791 | %u 2024-07-12T12:32:17,792 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-07-12T12:32:17,793 | ~~~~~~~~~~~ 2024-07-12T12:32:17,793 | | 2024-07-12T12:32:17,795 | size_t {aka unsigned int} 2024-07-12T12:32:17,796 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2024-07-12T12:32:17,797 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2024-07-12T12:32:17,798 | ~~^ 2024-07-12T12:32:17,798 | | 2024-07-12T12:32:17,799 | long unsigned int 2024-07-12T12:32:17,799 | %u 2024-07-12T12:32:17,800 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2024-07-12T12:32:17,800 | ~~~~~~~~~~~ 2024-07-12T12:32:17,801 | | 2024-07-12T12:32:17,801 | size_t {aka unsigned int} 2024-07-12T12:32:18,549 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-311/iseq2comem.o -fopenmp 2024-07-12T12:32:18,727 iseq2comem.c: In function ‘reads2mco’: 2024-07-12T12:32:18,728 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,728 156 | if (base > TL) { 2024-07-12T12:32:18,729 | ^ 2024-07-12T12:32:18,729 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,730 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-07-12T12:32:18,731 | ^~ 2024-07-12T12:32:18,731 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,732 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-07-12T12:32:18,733 | ^ 2024-07-12T12:32:18,733 iseq2comem.c: In function ‘fasta2co’: 2024-07-12T12:32:18,734 iseq2comem.c:239:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,735 239 | if (base > TL) { 2024-07-12T12:32:18,736 | ^ 2024-07-12T12:32:18,737 iseq2comem.c:243:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,737 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-07-12T12:32:18,738 | ^~ 2024-07-12T12:32:18,738 iseq2comem.c:243:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,739 243 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-07-12T12:32:18,740 | ^ 2024-07-12T12:32:18,740 iseq2comem.c: In function ‘fastq2co’: 2024-07-12T12:32:18,741 iseq2comem.c:272:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2024-07-12T12:32:18,742 272 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2024-07-12T12:32:18,743 | ^~ 2024-07-12T12:32:18,744 iseq2comem.c:318:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,744 318 | if (base > TL) { 2024-07-12T12:32:18,745 | ^ 2024-07-12T12:32:18,745 iseq2comem.c:322:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,746 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-07-12T12:32:18,747 | ^~ 2024-07-12T12:32:18,747 iseq2comem.c:322:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,748 322 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-07-12T12:32:18,748 | ^ 2024-07-12T12:32:18,749 iseq2comem.c:341:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,750 341 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2024-07-12T12:32:18,750 | ^ 2024-07-12T12:32:18,751 iseq2comem.c: In function ‘fastq2koc’: 2024-07-12T12:32:18,751 iseq2comem.c:402:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,752 402 | if (base > TL) { 2024-07-12T12:32:18,753 | ^ 2024-07-12T12:32:18,753 iseq2comem.c:406:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,754 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-07-12T12:32:18,754 | ^~ 2024-07-12T12:32:18,755 iseq2comem.c:406:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,756 406 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-07-12T12:32:18,757 | ^ 2024-07-12T12:32:18,758 iseq2comem.c: In function ‘mt_shortreads2koc’: 2024-07-12T12:32:18,759 iseq2comem.c:582:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,760 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-07-12T12:32:18,761 | ^~ 2024-07-12T12:32:18,761 iseq2comem.c:582:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:18,762 582 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2024-07-12T12:32:18,763 | ^ 2024-07-12T12:32:20,104 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mman.c -o build/temp.linux-armv7l-cpython-311/mman.o -fopenmp 2024-07-12T12:32:20,159 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mytime.c -o build/temp.linux-armv7l-cpython-311/mytime.o -fopenmp 2024-07-12T12:32:20,282 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c pykssd.c -o build/temp.linux-armv7l-cpython-311/pykssd.o -fopenmp 2024-07-12T12:32:20,670 pykssd.c: In function ‘py_dist_dispatch’: 2024-07-12T12:32:20,671 pykssd.c:304:13: warning: unused variable ‘state1’ [-Wunused-variable] 2024-07-12T12:32:20,671 304 | int state1 = dist_dispatch(&dist_opt_val1); 2024-07-12T12:32:20,672 | ^~~~~~ 2024-07-12T12:32:20,673 pykssd.c:361:13: warning: unused variable ‘state2’ [-Wunused-variable] 2024-07-12T12:32:20,673 361 | int state2 = dist_dispatch(&dist_opt_val2); 2024-07-12T12:32:20,674 | ^~~~~~ 2024-07-12T12:32:20,674 pykssd.c:480:13: warning: unused variable ‘state4’ [-Wunused-variable] 2024-07-12T12:32:20,675 480 | int state4 = dist_dispatch(&dist_opt_val4); 2024-07-12T12:32:20,676 | ^~~~~~ 2024-07-12T12:32:21,237 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/co2mco.o build/temp.linux-armv7l-cpython-311/command_composite.o build/temp.linux-armv7l-cpython-311/command_dist.o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o build/temp.linux-armv7l-cpython-311/command_set.o build/temp.linux-armv7l-cpython-311/command_shuffle.o build/temp.linux-armv7l-cpython-311/global_basic.o build/temp.linux-armv7l-cpython-311/iseq2comem.o build/temp.linux-armv7l-cpython-311/mman.o build/temp.linux-armv7l-cpython-311/mytime.o build/temp.linux-armv7l-cpython-311/pykssd.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-311/kssd.cpython-311-arm-linux-gnueabihf.so -fopenmp 2024-07-12T12:32:21,390 building 'nj' extension 2024-07-12T12:32:21,391 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c align.c -o build/temp.linux-armv7l-cpython-311/align.o 2024-07-12T12:32:21,848 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c buildtree.c -o build/temp.linux-armv7l-cpython-311/buildtree.o 2024-07-12T12:32:21,997 buildtree.c: In function ‘UPGMA_buildtree’: 2024-07-12T12:32:21,997 buildtree.c:716:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-07-12T12:32:21,998 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2024-07-12T12:32:21,999 | ^~ 2024-07-12T12:32:22,000 buildtree.c:716:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-07-12T12:32:22,001 716 | if (min_of_row_idx[m] == minj || min_of_row_idx[m] == mini) { 2024-07-12T12:32:22,002 | ^~ 2024-07-12T12:32:22,658 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c cluster.c -o build/temp.linux-armv7l-cpython-311/cluster.o 2024-07-12T12:32:23,029 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c distancemat.c -o build/temp.linux-armv7l-cpython-311/distancemat.o 2024-07-12T12:32:23,166 distancemat.c: In function ‘clone_DistanceMatrix’: 2024-07-12T12:32:23,166 distancemat.c:226:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-07-12T12:32:23,167 226 | for( i=0; i < dest->size; i++) { 2024-07-12T12:32:23,168 | ^ 2024-07-12T12:32:23,169 distancemat.c: In function ‘empty_DistanceMatrix’: 2024-07-12T12:32:23,169 distancemat.c:260:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-07-12T12:32:23,170 260 | for( i=0; i < mat->size; i++) { 2024-07-12T12:32:23,171 | ^ 2024-07-12T12:32:23,171 distancemat.c: In function ‘print_DistanceMatrix’: 2024-07-12T12:32:23,172 distancemat.c:349:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-07-12T12:32:23,173 349 | for(row=0; row < mat->size; row++) { 2024-07-12T12:32:23,174 | ^ 2024-07-12T12:32:23,174 distancemat.c: In function ‘read_phylip_DistanceMatrix’: 2024-07-12T12:32:23,175 distancemat.c:410:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 2024-07-12T12:32:23,175 410 | while(c = fgetc(handle)) { 2024-07-12T12:32:23,176 | ^ 2024-07-12T12:32:23,560 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c pynj.c -o build/temp.linux-armv7l-cpython-311/pynj.o 2024-07-12T12:32:24,024 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c sequence.c -o build/temp.linux-armv7l-cpython-311/sequence.o 2024-07-12T12:32:24,241 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c tree.c -o build/temp.linux-armv7l-cpython-311/tree.o 2024-07-12T12:32:25,052 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Injheaders -I/usr/include/python3.11 -c util.c -o build/temp.linux-armv7l-cpython-311/util.o 2024-07-12T12:32:25,228 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/align.o build/temp.linux-armv7l-cpython-311/buildtree.o build/temp.linux-armv7l-cpython-311/cluster.o build/temp.linux-armv7l-cpython-311/distancemat.o build/temp.linux-armv7l-cpython-311/pynj.o build/temp.linux-armv7l-cpython-311/sequence.o build/temp.linux-armv7l-cpython-311/tree.o build/temp.linux-armv7l-cpython-311/util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/nj.cpython-311-arm-linux-gnueabihf.so 2024-07-12T12:32:25,338 building 'dnj' extension 2024-07-12T12:32:25,339 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c bytescale.c -o build/temp.linux-armv7l-cpython-311/bytescale.o -fopenmp 2024-07-12T12:32:25,395 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c dnj.c -o build/temp.linux-armv7l-cpython-311/dnj.o -fopenmp 2024-07-12T12:32:25,566 dnj.c: In function ‘minQpair’: 2024-07-12T12:32:25,566 dnj.c:70:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:25,567 70 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:25,568 | ^~~ 2024-07-12T12:32:25,569 dnj.c:126:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:25,569 126 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:25,570 | ^~~ 2024-07-12T12:32:25,571 dnj.c: In function ‘maxQpair’: 2024-07-12T12:32:25,572 dnj.c:157:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:25,573 157 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:25,573 | ^~~ 2024-07-12T12:32:25,575 dnj.c:213:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:25,575 213 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:25,576 | ^~~ 2024-07-12T12:32:25,576 dnj.c: In function ‘UPGMApair’: 2024-07-12T12:32:25,577 dnj.c:237:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:25,577 237 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:25,578 | ^~~ 2024-07-12T12:32:25,578 dnj.c:284:25: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:25,579 284 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:25,579 | ^~~ 2024-07-12T12:32:25,580 dnj.c:291:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:25,581 291 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:25,581 | ^~~ 2024-07-12T12:32:25,582 dnj.c: In function ‘minQrow’: 2024-07-12T12:32:25,582 dnj.c:374:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:25,583 374 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:25,583 | ^~~ 2024-07-12T12:32:25,584 dnj.c: In function ‘maxQrow’: 2024-07-12T12:32:25,585 dnj.c:435:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:25,585 435 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:25,586 | ^~~ 2024-07-12T12:32:25,586 dnj.c: In function ‘UPGMArow’: 2024-07-12T12:32:25,587 dnj.c:488:21: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:25,587 488 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:25,589 | ^~~ 2024-07-12T12:32:25,589 dnj.c:494:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:25,590 494 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:25,590 | ^~~ 2024-07-12T12:32:25,591 dnj.c: In function ‘minQ_thread’: 2024-07-12T12:32:25,591 dnj.c:553:17: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:25,592 553 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:25,593 | ^~~ 2024-07-12T12:32:26,979 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c filebuff.c -o build/temp.linux-armv7l-cpython-311/filebuff.o -fopenmp 2024-07-12T12:32:27,098 filebuff.c: In function ‘BuffgzFileBuff’: 2024-07-12T12:32:27,099 filebuff.c:99:54: warning: comparison of integer expressions of different signedness: ‘uInt’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:27,100 99 | if(status == Z_STREAM_END && strm->avail_out == dest->buffSize) { 2024-07-12T12:32:27,100 | ^~ 2024-07-12T12:32:27,425 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c hclust.c -o build/temp.linux-armv7l-cpython-311/hclust.o -fopenmp 2024-07-12T12:32:27,570 hclust.c: In function ‘minQ’: 2024-07-12T12:32:27,571 hclust.c:364:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-07-12T12:32:27,572 364 | while(++i < Q->n) { 2024-07-12T12:32:27,572 | ^ 2024-07-12T12:32:27,573 hclust.c:377:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:27,574 377 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:27,575 | ^~~ 2024-07-12T12:32:27,576 hclust.c: In function ‘maxQ’: 2024-07-12T12:32:27,576 hclust.c:394:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2024-07-12T12:32:27,577 394 | while(++i < Q->n) { 2024-07-12T12:32:27,577 | ^ 2024-07-12T12:32:27,578 hclust.c:407:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:27,578 407 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:27,579 | ^~~ 2024-07-12T12:32:29,958 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c matrix.c -o build/temp.linux-armv7l-cpython-311/matrix.o -fopenmp 2024-07-12T12:32:30,086 matrix.c: In function ‘ltdMatrix_popArrange’: 2024-07-12T12:32:30,087 matrix.c:538:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2024-07-12T12:32:30,087 538 | if(pos != n) { 2024-07-12T12:32:30,088 | ^~ 2024-07-12T12:32:30,966 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c mman.c -o build/temp.linux-armv7l-cpython-311/mman.o -fopenmp 2024-07-12T12:32:31,022 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c nj.c -o build/temp.linux-armv7l-cpython-311/nj.o -fopenmp 2024-07-12T12:32:31,153 nj.c: In function ‘initQ’: 2024-07-12T12:32:31,154 nj.c:243:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:31,155 243 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:31,155 | ^~~ 2024-07-12T12:32:31,156 nj.c: In function ‘initQ_MN’: 2024-07-12T12:32:31,157 nj.c:358:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:31,157 358 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:31,158 | ^~~ 2024-07-12T12:32:31,161 nj.c: In function ‘minD’: 2024-07-12T12:32:31,162 nj.c:559:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:31,163 559 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:31,163 | ^~~ 2024-07-12T12:32:31,164 nj.c: In function ‘maxD’: 2024-07-12T12:32:31,165 nj.c:642:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:31,166 642 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:31,166 | ^~~ 2024-07-12T12:32:31,169 nj.c: In function ‘minPair’: 2024-07-12T12:32:31,169 nj.c:826:13: warning: left shift count >= width of type [-Wshift-count-overflow] 2024-07-12T12:32:31,170 826 | pos <<= sizeof(unsigned) * 8; 2024-07-12T12:32:31,171 | ^~~ 2024-07-12T12:32:33,534 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c nwck.c -o build/temp.linux-armv7l-cpython-311/nwck.o -fopenmp 2024-07-12T12:32:34,080 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c pherror.c -o build/temp.linux-armv7l-cpython-311/pherror.o -fopenmp 2024-07-12T12:32:34,174 pherror.c: In function ‘cfread’: 2024-07-12T12:32:34,175 pherror.c:58:56: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2024-07-12T12:32:34,175 58 | } else if(nmemb == 0 || (nmemb == -1 && (errno & EAGAIN))) { 2024-07-12T12:32:34,177 | ^~ 2024-07-12T12:32:34,268 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c phy.c -o build/temp.linux-armv7l-cpython-311/phy.o -fopenmp 2024-07-12T12:32:35,335 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c pydnj.c -o build/temp.linux-armv7l-cpython-311/pydnj.o -fopenmp 2024-07-12T12:32:35,711 In file included from pydnj.c:11: 2024-07-12T12:32:35,711 dnjheaders/pherror.h:20: warning: "_XOPEN_SOURCE" redefined 2024-07-12T12:32:35,712 20 | #define _XOPEN_SOURCE 600 2024-07-12T12:32:35,712 | 2024-07-12T12:32:35,713 In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33, 2024-07-12T12:32:35,713 from /usr/include/stdlib.h:26, 2024-07-12T12:32:35,714 from /usr/include/python3.11/Python.h:23, 2024-07-12T12:32:35,714 from pydnj.c:1: 2024-07-12T12:32:35,715 /usr/include/features.h:214: note: this is the location of the previous definition 2024-07-12T12:32:35,715 214 | # define _XOPEN_SOURCE 700 2024-07-12T12:32:35,716 | 2024-07-12T12:32:35,736 pydnj.c: In function ‘py_build’: 2024-07-12T12:32:35,737 pydnj.c:165:9: warning: implicit declaration of function ‘omp_get_num_procs’ [-Wimplicit-function-declaration] 2024-07-12T12:32:35,737 165 | p = omp_get_num_procs(); 2024-07-12T12:32:35,739 | ^~~~~~~~~~~~~~~~~ 2024-07-12T12:32:35,857 pydnj.c:169:5: warning: ‘free’ called on pointer returned from a mismatched allocation function [-Wmismatched-dealloc] 2024-07-12T12:32:35,857 169 | free(file); 2024-07-12T12:32:35,858 | ^~~~~~~~~~ 2024-07-12T12:32:35,858 pydnj.c:125:12: note: returned from ‘fopen’ 2024-07-12T12:32:35,859 125 | file = fopen(inputfilename, "r"); 2024-07-12T12:32:35,860 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2024-07-12T12:32:35,933 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c qseqs.c -o build/temp.linux-armv7l-cpython-311/qseqs.o -fopenmp 2024-07-12T12:32:36,146 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c str.c -o build/temp.linux-armv7l-cpython-311/str.o -fopenmp 2024-07-12T12:32:36,259 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c tmp.c -o build/temp.linux-armv7l-cpython-311/tmp.o -fopenmp 2024-07-12T12:32:36,455 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Idnjheaders -I/usr/include/python3.11 -c vector.c -o build/temp.linux-armv7l-cpython-311/vector.o -fopenmp 2024-07-12T12:32:36,618 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/bytescale.o build/temp.linux-armv7l-cpython-311/dnj.o build/temp.linux-armv7l-cpython-311/filebuff.o build/temp.linux-armv7l-cpython-311/hclust.o build/temp.linux-armv7l-cpython-311/matrix.o build/temp.linux-armv7l-cpython-311/mman.o build/temp.linux-armv7l-cpython-311/nj.o build/temp.linux-armv7l-cpython-311/nwck.o build/temp.linux-armv7l-cpython-311/pherror.o build/temp.linux-armv7l-cpython-311/phy.o build/temp.linux-armv7l-cpython-311/pydnj.o build/temp.linux-armv7l-cpython-311/qseqs.o build/temp.linux-armv7l-cpython-311/str.o build/temp.linux-armv7l-cpython-311/tmp.o build/temp.linux-armv7l-cpython-311/vector.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-311/dnj.cpython-311-arm-linux-gnueabihf.so -fopenmp 2024-07-12T12:32:36,790 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-07-12T12:32:36,790 !! 2024-07-12T12:32:36,791 ******************************************************************************** 2024-07-12T12:32:36,792 Please avoid running ``setup.py`` directly. 2024-07-12T12:32:36,792 Instead, use pypa/build, pypa/installer or other 2024-07-12T12:32:36,793 standards-based tools. 2024-07-12T12:32:36,794 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-07-12T12:32:36,794 ******************************************************************************** 2024-07-12T12:32:36,795 !! 2024-07-12T12:32:36,795 self.initialize_options() 2024-07-12T12:32:36,820 installing to build/bdist.linux-armv7l/wheel 2024-07-12T12:32:36,821 running install 2024-07-12T12:32:36,845 running install_lib 2024-07-12T12:32:36,872 creating build/bdist.linux-armv7l 2024-07-12T12:32:36,873 creating build/bdist.linux-armv7l/wheel 2024-07-12T12:32:36,875 copying build/lib.linux-armv7l-cpython-311/toolutils.py -> build/bdist.linux-armv7l/wheel 2024-07-12T12:32:36,877 copying build/lib.linux-armv7l-cpython-311/nj.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-07-12T12:32:36,883 copying build/lib.linux-armv7l-cpython-311/dnj.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-07-12T12:32:36,898 copying build/lib.linux-armv7l-cpython-311/kssdtree.py -> build/bdist.linux-armv7l/wheel 2024-07-12T12:32:36,901 copying build/lib.linux-armv7l-cpython-311/kssd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2024-07-12T12:32:36,910 running install_egg_info 2024-07-12T12:32:36,954 Copying kssdtree.egg-info to build/bdist.linux-armv7l/wheel/kssdtree-2.0.0-py3.11.egg-info 2024-07-12T12:32:36,969 running install_scripts 2024-07-12T12:32:37,028 creating build/bdist.linux-armv7l/wheel/kssdtree-2.0.0.dist-info/WHEEL 2024-07-12T12:32:37,031 creating '/tmp/pip-wheel-031ab_mp/kssdtree-2.0.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-12T12:32:37,098 adding 'dnj.cpython-311-arm-linux-gnueabihf.so' 2024-07-12T12:32:37,181 adding 'kssd.cpython-311-arm-linux-gnueabihf.so' 2024-07-12T12:32:37,185 adding 'kssdtree.py' 2024-07-12T12:32:37,205 adding 'nj.cpython-311-arm-linux-gnueabihf.so' 2024-07-12T12:32:37,208 adding 'toolutils.py' 2024-07-12T12:32:37,210 adding 'kssdtree-2.0.0.dist-info/METADATA' 2024-07-12T12:32:37,211 adding 'kssdtree-2.0.0.dist-info/WHEEL' 2024-07-12T12:32:37,212 adding 'kssdtree-2.0.0.dist-info/dependency_links.txt' 2024-07-12T12:32:37,213 adding 'kssdtree-2.0.0.dist-info/top_level.txt' 2024-07-12T12:32:37,214 adding 'kssdtree-2.0.0.dist-info/RECORD' 2024-07-12T12:32:37,222 removing build/bdist.linux-armv7l/wheel 2024-07-12T12:32:37,380 Building wheel for kssdtree (setup.py): finished with status 'done' 2024-07-12T12:32:37,386 Created wheel for kssdtree: filename=kssdtree-2.0.0-cp311-cp311-linux_armv7l.whl size=379915 sha256=16a2e46376ed2874435371fd57a97405d4b631b35c014b9e395a4528a1e655b8 2024-07-12T12:32:37,388 Stored in directory: /tmp/pip-ephem-wheel-cache-avw1zs5e/wheels/6a/64/30/9cb5b956a3f29334e786c41a0b0ca5ea848eb259ca9b612e69 2024-07-12T12:32:37,397 Successfully built kssdtree 2024-07-12T12:32:37,408 Removed build tracker: '/tmp/pip-build-tracker-dnuqf8gi'