2024-07-16T06:28:59,295 Created temporary directory: /tmp/pip-build-tracker-36lc3a6p
2024-07-16T06:28:59,297 Initialized build tracking at /tmp/pip-build-tracker-36lc3a6p
2024-07-16T06:28:59,297 Created build tracker: /tmp/pip-build-tracker-36lc3a6p
2024-07-16T06:28:59,297 Entered build tracker: /tmp/pip-build-tracker-36lc3a6p
2024-07-16T06:28:59,298 Created temporary directory: /tmp/pip-wheel-ysht8sor
2024-07-16T06:28:59,302 Created temporary directory: /tmp/pip-ephem-wheel-cache-i6afj1gg
2024-07-16T06:28:59,329 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-16T06:28:59,332 2 location(s) to search for versions of graftm:
2024-07-16T06:28:59,332 * https://pypi.org/simple/graftm/
2024-07-16T06:28:59,332 * https://www.piwheels.org/simple/graftm/
2024-07-16T06:28:59,333 Fetching project page and analyzing links: https://pypi.org/simple/graftm/
2024-07-16T06:28:59,334 Getting page https://pypi.org/simple/graftm/
2024-07-16T06:28:59,335 Found index url https://pypi.org/simple/
2024-07-16T06:28:59,388 Fetched page https://pypi.org/simple/graftm/ as application/vnd.pypi.simple.v1+json
2024-07-16T06:28:59,393   Found link https://files.pythonhosted.org/packages/cf/1e/71db19e29db1663a3c9bcd247df145b243e3f6d410195316b5b1c8ccfd21/graftm-0.5.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.5.0
2024-07-16T06:28:59,394   Found link https://files.pythonhosted.org/packages/74/04/f648bab21ebd66b9cda9555d2c52f54dc2325378388e58e59a7019fc381e/graftm-0.5.2.tar.gz (from https://pypi.org/simple/graftm/), version: 0.5.2
2024-07-16T06:28:59,394   Found link https://files.pythonhosted.org/packages/4a/e6/6f749f3c87cf6c1dcbc24ce4a72952b3ba4021230e5f545acc4afadd01e1/graftm-0.5.3.tar.gz (from https://pypi.org/simple/graftm/), version: 0.5.3
2024-07-16T06:28:59,395   Found link https://files.pythonhosted.org/packages/1b/50/61a17c245c4672fa5eb3226fef85199c89233cd0b4bb39863f91378213c8/graftm-0.5.4.tar.gz (from https://pypi.org/simple/graftm/), version: 0.5.4
2024-07-16T06:28:59,395   Found link https://files.pythonhosted.org/packages/72/58/4b655687b9df5d8fccc5827483b87758829e9bcd39ca289f92d6f3ceda1e/graftm-0.6.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.6.0
2024-07-16T06:28:59,395   Found link https://files.pythonhosted.org/packages/50/5b/018d941dccc3d7dfc5a05d2d3e53d3483307fbf209359cf89e12fadd5749/graftm-0.6.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.6.1
2024-07-16T06:28:59,395   Found link https://files.pythonhosted.org/packages/2a/fc/ddcdcab3a801c1f0d9454ab673aa30d0a6d320317119a81efd1b4bd6d1a5/graftm-0.6.3.tar.gz (from https://pypi.org/simple/graftm/), version: 0.6.3
2024-07-16T06:28:59,396   Found link https://files.pythonhosted.org/packages/c4/c5/9d8d9c596f3898544aa025e17090c0f1a5dec0220f6a7d3da992c45b234b/graftm-0.9.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.9.0
2024-07-16T06:28:59,396   Found link https://files.pythonhosted.org/packages/e3/fd/b797fa957c9d6ff08da532395ba98d3d725bbf39e229ce4a4b4c854cb390/graftm-0.9.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.9.1
2024-07-16T06:28:59,396   Found link https://files.pythonhosted.org/packages/77/16/b13ed3f18c489fdca20d6e66d8a4b5e66d092ff42ed95e1d60ff9f459729/graftm-0.9.2.tar.gz (from https://pypi.org/simple/graftm/), version: 0.9.2
2024-07-16T06:28:59,397   Found link https://files.pythonhosted.org/packages/9b/78/9afad222dd333c937029a6e8c1e89eed22d2e9ed4c09a388079dd795824b/graftm-0.9.3.tar.gz (from https://pypi.org/simple/graftm/), version: 0.9.3
2024-07-16T06:28:59,397   Found link https://files.pythonhosted.org/packages/a6/1a/44564745af44ec8b416b523a87622e5ae5e9526a191b09cf75a97e28f9fe/graftm-0.9.4.tar.gz (from https://pypi.org/simple/graftm/), version: 0.9.4
2024-07-16T06:28:59,397   Found link https://files.pythonhosted.org/packages/a4/23/26fed63cbfd34d145e622342863547b20a720e656b1f64242ead222d7537/graftm-0.9.5.tar.gz (from https://pypi.org/simple/graftm/), version: 0.9.5
2024-07-16T06:28:59,397   Found link https://files.pythonhosted.org/packages/d3/45/fb464bff4ea40aae267c7f3f877b7d7fda506691d158aa7f60ed1ccc6bd2/graftm-0.10.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.10.1
2024-07-16T06:28:59,398   Found link https://files.pythonhosted.org/packages/cf/de/2ce62eaeb73fb73b9dafef4eca02a976d427de387f71dd2826b1808317c6/graftm-0.11.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.11.0
2024-07-16T06:28:59,398   Found link https://files.pythonhosted.org/packages/05/d4/2e5f7283cbd155ba82a443dde25617b769ca50f476877a63891242979fbd/graftm-0.11.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.11.1
2024-07-16T06:28:59,398   Found link https://files.pythonhosted.org/packages/ee/c2/89c74e969769b21b31d0d6032155fcbae9a3058f55583ca6c216172befe6/graftm-0.12.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.12.0
2024-07-16T06:28:59,398   Found link https://files.pythonhosted.org/packages/70/29/db59b6bea48d909460a44e38705f38da052f95b3031919c119157afd283c/graftm-0.12.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.12.1
2024-07-16T06:28:59,399   Found link https://files.pythonhosted.org/packages/cd/9f/400a7c8d3bf9f21b638c5412a3b39f6f4d7af99bd751c16e4df4dffa0365/graftm-0.12.2.tar.gz (from https://pypi.org/simple/graftm/), version: 0.12.2
2024-07-16T06:28:59,399   Skipping link: No binaries permitted for graftm: https://files.pythonhosted.org/packages/1d/c8/7f2d3d8039956a6ca4a5242e65408ec5ccabf848de20fbab9ef293ff5707/graftm-0.13.1-py3-none-any.whl (from https://pypi.org/simple/graftm/)
2024-07-16T06:28:59,399   Found link https://files.pythonhosted.org/packages/2b/32/e48cfc4fa2fc331b996bb821fb5485baab629bc90d48d4621a7543725f3a/graftm-0.13.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.13.1
2024-07-16T06:28:59,399   Skipping link: No binaries permitted for graftm: https://files.pythonhosted.org/packages/91/17/24c77ca3d4debec95611633f44120cb789be1398acae34a8a0ea35b40cca/graftm-0.14.0-py3-none-any.whl (from https://pypi.org/simple/graftm/)
2024-07-16T06:28:59,400   Found link https://files.pythonhosted.org/packages/63/52/3e79be958516522aa48f137a07a777e763453013ebbc7572a6e180461a1d/graftm-0.14.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.14.0
2024-07-16T06:28:59,400   Skipping link: No binaries permitted for graftm: https://files.pythonhosted.org/packages/a0/d5/df4517281479ca45c30bf4eb303880c52e138752cbe44a1bee96ca834dbd/graftm-0.15.0-py3-none-any.whl (from https://pypi.org/simple/graftm/)
2024-07-16T06:28:59,400   Found link https://files.pythonhosted.org/packages/6f/dc/8c7b874a0fbeaa4ffb613aa0dcee722222ba0c06276e42881cac79048fc7/graftm-0.15.0.tar.gz (from https://pypi.org/simple/graftm/), version: 0.15.0
2024-07-16T06:28:59,400   Skipping link: No binaries permitted for graftm: https://files.pythonhosted.org/packages/d3/9e/6dc463e0dd5bb502738756b6c2269c4842b757119c1cf15d098700ea6fba/graftm-0.15.1-py3-none-any.whl (from https://pypi.org/simple/graftm/)
2024-07-16T06:28:59,401   Found link https://files.pythonhosted.org/packages/bf/a7/283e41730d4d63c87d0fdb055357307d18bc7ca1736f6156baf46762343a/graftm-0.15.1.tar.gz (from https://pypi.org/simple/graftm/), version: 0.15.1
2024-07-16T06:28:59,401 Fetching project page and analyzing links: https://www.piwheels.org/simple/graftm/
2024-07-16T06:28:59,401 Getting page https://www.piwheels.org/simple/graftm/
2024-07-16T06:28:59,402 Found index url https://www.piwheels.org/simple/
2024-07-16T06:28:59,485 Fetched page https://www.piwheels.org/simple/graftm/ as text/html
2024-07-16T06:28:59,490   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.15.0-py3-none-any.whl#sha256=d13296fffe5ea212565d13963387550c67f70a6506fa258584fb414fa24f8253 (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,490   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.14.0-py3-none-any.whl#sha256=7a82ccaa98c671484d055482090b012badab234534266066179a71a9c61df7ef (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,490   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.13.1-py3-none-any.whl#sha256=54ef11fe7098cea440997a2a33e9f2a1e072c7491f86e7323e66c8fe20971e2b (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,491   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.12.2-py3-none-any.whl#sha256=fc902b78b560a8c57f1033ebad70615d1e9ee36d4f6d28e7f22dee5d12858cb6 (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,491   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.12.1-py3-none-any.whl#sha256=0f175062375a657321453af41daeded35d2125c437916fb48f96b6bbea6fd0d6 (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,491   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.12.0-py3-none-any.whl#sha256=2a42e4a46bf20cb0eec97d47c57480400bb9960207048293089cdb5f80cff3b1 (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,491   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.11.1-py3-none-any.whl#sha256=834769724ca84a4d3f832356411c6b1b1fde9558552b47673dce4a4a8d9b2762 (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,491   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.11.0-py3-none-any.whl#sha256=96555eec3fa770a90d6c2f49ee30bf551b72cdb2f585722070e96fcf06932d54 (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,492   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.10.1-py3-none-any.whl#sha256=a6eb49f2f793418b6bc9b3c68d8b256967fa2db3198a0c25a8f18d7f82906955 (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,492   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.5-py3-none-any.whl#sha256=de155e8f64ea68fc88ff78c2b7cdab6fd85563e43cd50cb5e88df7abcfc813a8 (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,492   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.4-py3-none-any.whl#sha256=e73ceab33e2600b85aa818597ea6ccbbff5cc96053dbeb78e62130dcc78d5430 (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,492   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.3-py3-none-any.whl#sha256=091aeb22cff06ef6d5c22956708686271669e83abfefcf4a15fafafbb829fc00 (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,492   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.2-py3-none-any.whl#sha256=7b074dcfa75788c11263d9d593d29255d686b145af754746f52f12966555fbdc (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,493   Skipping link: No binaries permitted for graftm: https://www.piwheels.org/simple/graftm/graftm-0.9.1-py3-none-any.whl#sha256=f1540f8a25064d0f18b0a75f1b25983944ce06cc5cbedf9588733a27a136cc77 (from https://www.piwheels.org/simple/graftm/)
2024-07-16T06:28:59,493 Skipping link: not a file: https://www.piwheels.org/simple/graftm/
2024-07-16T06:28:59,493 Skipping link: not a file: https://pypi.org/simple/graftm/
2024-07-16T06:28:59,513 Given no hashes to check 1 links for project 'graftm': discarding no candidates
2024-07-16T06:28:59,530 Collecting graftm==0.15.1
2024-07-16T06:28:59,534   Created temporary directory: /tmp/pip-unpack-ld1fg8ol
2024-07-16T06:28:59,579   Downloading graftm-0.15.1.tar.gz (12.5 MB)
2024-07-16T06:29:02,711   Added graftm==0.15.1 from https://files.pythonhosted.org/packages/bf/a7/283e41730d4d63c87d0fdb055357307d18bc7ca1736f6156baf46762343a/graftm-0.15.1.tar.gz to build tracker '/tmp/pip-build-tracker-36lc3a6p'
2024-07-16T06:29:02,713   Running setup.py (path:/tmp/pip-wheel-ysht8sor/graftm_eed46cb4a3204df38e8cad4d468f5381/setup.py) egg_info for package graftm
2024-07-16T06:29:02,714   Created temporary directory: /tmp/pip-pip-egg-info-881zvtib
2024-07-16T06:29:02,714   Preparing metadata (setup.py): started
2024-07-16T06:29:02,715   Running command python setup.py egg_info
2024-07-16T06:29:03,271   /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:266: UserWarning: Unknown distribution option: 'description_content_type'
2024-07-16T06:29:03,271     warnings.warn(msg)
2024-07-16T06:29:03,845   running egg_info
2024-07-16T06:29:03,846   creating /tmp/pip-pip-egg-info-881zvtib/graftm.egg-info
2024-07-16T06:29:03,869   writing /tmp/pip-pip-egg-info-881zvtib/graftm.egg-info/PKG-INFO
2024-07-16T06:29:03,873   writing dependency_links to /tmp/pip-pip-egg-info-881zvtib/graftm.egg-info/dependency_links.txt
2024-07-16T06:29:03,875   writing requirements to /tmp/pip-pip-egg-info-881zvtib/graftm.egg-info/requires.txt
2024-07-16T06:29:03,876   writing top-level names to /tmp/pip-pip-egg-info-881zvtib/graftm.egg-info/top_level.txt
2024-07-16T06:29:03,877   writing manifest file '/tmp/pip-pip-egg-info-881zvtib/graftm.egg-info/SOURCES.txt'
2024-07-16T06:29:03,978   reading manifest file '/tmp/pip-pip-egg-info-881zvtib/graftm.egg-info/SOURCES.txt'
2024-07-16T06:29:03,979   reading manifest template 'MANIFEST.in'
2024-07-16T06:29:03,981   warning: no files found matching '*.txt' under directory 'examples'
2024-07-16T06:29:03,981   warning: no files found matching '*.py' under directory 'examples'
2024-07-16T06:29:04,095   adding license file 'LICENCE.txt'
2024-07-16T06:29:04,104   writing manifest file '/tmp/pip-pip-egg-info-881zvtib/graftm.egg-info/SOURCES.txt'
2024-07-16T06:29:04,204   Preparing metadata (setup.py): finished with status 'done'
2024-07-16T06:29:04,215   Source in /tmp/pip-wheel-ysht8sor/graftm_eed46cb4a3204df38e8cad4d468f5381 has version 0.15.1, which satisfies requirement graftm==0.15.1 from https://files.pythonhosted.org/packages/bf/a7/283e41730d4d63c87d0fdb055357307d18bc7ca1736f6156baf46762343a/graftm-0.15.1.tar.gz
2024-07-16T06:29:04,216   Removed graftm==0.15.1 from https://files.pythonhosted.org/packages/bf/a7/283e41730d4d63c87d0fdb055357307d18bc7ca1736f6156baf46762343a/graftm-0.15.1.tar.gz from build tracker '/tmp/pip-build-tracker-36lc3a6p'
2024-07-16T06:29:04,221 Created temporary directory: /tmp/pip-unpack-fa9ah4fg
2024-07-16T06:29:04,222 Created temporary directory: /tmp/pip-unpack-t2egy5_o
2024-07-16T06:29:04,237 Building wheels for collected packages: graftm
2024-07-16T06:29:04,241   Created temporary directory: /tmp/pip-wheel-i5tv4drd
2024-07-16T06:29:04,242   Building wheel for graftm (setup.py): started
2024-07-16T06:29:04,243   Destination directory: /tmp/pip-wheel-i5tv4drd
2024-07-16T06:29:04,243   Running command python setup.py bdist_wheel
2024-07-16T06:29:04,775   /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:266: UserWarning: Unknown distribution option: 'description_content_type'
2024-07-16T06:29:04,775     warnings.warn(msg)
2024-07-16T06:29:05,338   running bdist_wheel
2024-07-16T06:29:05,433   running build
2024-07-16T06:29:05,433   running build_py
2024-07-16T06:29:05,461   creating build
2024-07-16T06:29:05,462   creating build/lib
2024-07-16T06:29:05,463   creating build/lib/graftm
2024-07-16T06:29:05,464   copying graftm/expand_searcher.py -> build/lib/graftm
2024-07-16T06:29:05,466   copying graftm/dendropy_tree_cleaner.py -> build/lib/graftm
2024-07-16T06:29:05,468   copying graftm/classify.py -> build/lib/graftm
2024-07-16T06:29:05,470   copying graftm/__init__.py -> build/lib/graftm
2024-07-16T06:29:05,472   copying graftm/db_search_results.py -> build/lib/graftm
2024-07-16T06:29:05,473   copying graftm/tree_decorator.py -> build/lib/graftm
2024-07-16T06:29:05,475   copying graftm/getaxnseq.py -> build/lib/graftm
2024-07-16T06:29:05,478   copying graftm/diamond.py -> build/lib/graftm
2024-07-16T06:29:05,479   copying graftm/unpack_sequences.py -> build/lib/graftm
2024-07-16T06:29:05,481   copying graftm/external_program_suite.py -> build/lib/graftm
2024-07-16T06:29:05,483   copying graftm/readHmmTable.py -> build/lib/graftm
2024-07-16T06:29:05,485   copying graftm/timeit.py -> build/lib/graftm
2024-07-16T06:29:05,486   copying graftm/search_table.py -> build/lib/graftm
2024-07-16T06:29:05,488   copying graftm/sequence_searcher.py -> build/lib/graftm
2024-07-16T06:29:05,492   copying graftm/clusterer.py -> build/lib/graftm
2024-07-16T06:29:05,494   copying graftm/pplacer.py -> build/lib/graftm
2024-07-16T06:29:05,496   copying graftm/run.py -> build/lib/graftm
2024-07-16T06:29:05,499   copying graftm/graftm_package.py -> build/lib/graftm
2024-07-16T06:29:05,501   copying graftm/decoy_filter.py -> build/lib/graftm
2024-07-16T06:29:05,503   copying graftm/sequence_extractor.py -> build/lib/graftm
2024-07-16T06:29:05,505   copying graftm/taxonomy_cleaner.py -> build/lib/graftm
2024-07-16T06:29:05,507   copying graftm/rerooter.py -> build/lib/graftm
2024-07-16T06:29:05,508   copying graftm/taxonomy_extractor.py -> build/lib/graftm
2024-07-16T06:29:05,510   copying graftm/greengenes_taxonomy.py -> build/lib/graftm
2024-07-16T06:29:05,512   copying graftm/reannotator.py -> build/lib/graftm
2024-07-16T06:29:05,513   copying graftm/hmmsearcher.py -> build/lib/graftm
2024-07-16T06:29:05,515   copying graftm/archive.py -> build/lib/graftm
2024-07-16T06:29:05,517   copying graftm/decorator.py -> build/lib/graftm
2024-07-16T06:29:05,519   copying graftm/housekeeping.py -> build/lib/graftm
2024-07-16T06:29:05,521   copying graftm/update.py -> build/lib/graftm
2024-07-16T06:29:05,523   copying graftm/version.py -> build/lib/graftm
2024-07-16T06:29:05,524   copying graftm/sequence_search_results.py -> build/lib/graftm
2024-07-16T06:29:05,526   copying graftm/graftm_output_paths.py -> build/lib/graftm
2024-07-16T06:29:05,529   copying graftm/orfm.py -> build/lib/graftm
2024-07-16T06:29:05,530   copying graftm/deduplicator.py -> build/lib/graftm
2024-07-16T06:29:05,532   copying graftm/sequence_io.py -> build/lib/graftm
2024-07-16T06:29:05,534   copying graftm/summarise.py -> build/lib/graftm
2024-07-16T06:29:05,536   copying graftm/create.py -> build/lib/graftm
2024-07-16T06:29:05,541   running build_scripts
2024-07-16T06:29:05,541   creating build/scripts-3.9
2024-07-16T06:29:05,542   copying and adjusting bin/graftM -> build/scripts-3.9
2024-07-16T06:29:05,545   changing mode of build/scripts-3.9/graftM from 644 to 755
2024-07-16T06:29:05,570   /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-07-16T06:29:05,571   !!

2024-07-16T06:29:05,571           ********************************************************************************
2024-07-16T06:29:05,571           Please avoid running ``setup.py`` directly.
2024-07-16T06:29:05,571           Instead, use pypa/build, pypa/installer or other
2024-07-16T06:29:05,571           standards-based tools.

2024-07-16T06:29:05,572           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-07-16T06:29:05,572           ********************************************************************************

2024-07-16T06:29:05,572   !!
2024-07-16T06:29:05,572     self.initialize_options()
2024-07-16T06:29:05,593   installing to build/bdist.linux-armv7l/wheel
2024-07-16T06:29:05,593   running install
2024-07-16T06:29:05,618   running install_lib
2024-07-16T06:29:05,641   creating build/bdist.linux-armv7l
2024-07-16T06:29:05,642   creating build/bdist.linux-armv7l/wheel
2024-07-16T06:29:05,644   creating build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,645   copying build/lib/graftm/expand_searcher.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,647   copying build/lib/graftm/dendropy_tree_cleaner.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,649   copying build/lib/graftm/classify.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,651   copying build/lib/graftm/__init__.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,653   copying build/lib/graftm/db_search_results.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,654   copying build/lib/graftm/tree_decorator.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,657   copying build/lib/graftm/getaxnseq.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,659   copying build/lib/graftm/diamond.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,661   copying build/lib/graftm/unpack_sequences.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,663   copying build/lib/graftm/external_program_suite.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,665   copying build/lib/graftm/readHmmTable.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,667   copying build/lib/graftm/timeit.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,669   copying build/lib/graftm/search_table.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,671   copying build/lib/graftm/sequence_searcher.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,674   copying build/lib/graftm/clusterer.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,676   copying build/lib/graftm/pplacer.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,678   copying build/lib/graftm/run.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,681   copying build/lib/graftm/graftm_package.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,684   copying build/lib/graftm/decoy_filter.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,686   copying build/lib/graftm/sequence_extractor.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,688   copying build/lib/graftm/taxonomy_cleaner.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,689   copying build/lib/graftm/rerooter.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,691   copying build/lib/graftm/taxonomy_extractor.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,693   copying build/lib/graftm/greengenes_taxonomy.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,695   copying build/lib/graftm/reannotator.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,696   copying build/lib/graftm/hmmsearcher.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,698   copying build/lib/graftm/archive.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,700   copying build/lib/graftm/decorator.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,702   copying build/lib/graftm/housekeeping.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,704   copying build/lib/graftm/update.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,706   copying build/lib/graftm/version.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,708   copying build/lib/graftm/sequence_search_results.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,710   copying build/lib/graftm/graftm_output_paths.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,712   copying build/lib/graftm/orfm.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,714   copying build/lib/graftm/deduplicator.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,716   copying build/lib/graftm/sequence_io.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,717   copying build/lib/graftm/summarise.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,719   copying build/lib/graftm/create.py -> build/bdist.linux-armv7l/wheel/graftm
2024-07-16T06:29:05,722   running install_data
2024-07-16T06:29:05,755   creating build/bdist.linux-armv7l/wheel/graftm-0.15.1.data
2024-07-16T06:29:05,756   creating build/bdist.linux-armv7l/wheel/graftm-0.15.1.data/data
2024-07-16T06:29:05,757   creating build/bdist.linux-armv7l/wheel/graftm-0.15.1.data/data/share
2024-07-16T06:29:05,758   copying share/18S.hmm -> build/bdist.linux-armv7l/wheel/graftm-0.15.1.data/data/share
2024-07-16T06:29:05,766   running install_egg_info
2024-07-16T06:29:05,824   running egg_info
2024-07-16T06:29:05,847   writing graftm.egg-info/PKG-INFO
2024-07-16T06:29:05,850   writing dependency_links to graftm.egg-info/dependency_links.txt
2024-07-16T06:29:05,852   writing requirements to graftm.egg-info/requires.txt
2024-07-16T06:29:05,853   writing top-level names to graftm.egg-info/top_level.txt
2024-07-16T06:29:05,882   reading manifest file 'graftm.egg-info/SOURCES.txt'
2024-07-16T06:29:05,888   reading manifest template 'MANIFEST.in'
2024-07-16T06:29:05,890   warning: no files found matching '*.txt' under directory 'examples'
2024-07-16T06:29:05,890   warning: no files found matching '*.py' under directory 'examples'
2024-07-16T06:29:05,937   adding license file 'LICENCE.txt'
2024-07-16T06:29:05,949   writing manifest file 'graftm.egg-info/SOURCES.txt'
2024-07-16T06:29:05,950   Copying graftm.egg-info to build/bdist.linux-armv7l/wheel/graftm-0.15.1-py3.9.egg-info
2024-07-16T06:29:05,961   running install_scripts
2024-07-16T06:29:05,962   creating build/bdist.linux-armv7l/wheel/graftm-0.15.1.data/scripts
2024-07-16T06:29:05,962   copying build/scripts-3.9/graftM -> build/bdist.linux-armv7l/wheel/graftm-0.15.1.data/scripts
2024-07-16T06:29:05,965   changing mode of build/bdist.linux-armv7l/wheel/graftm-0.15.1.data/scripts/graftM to 755
2024-07-16T06:29:05,982   adding license file "LICENCE.txt" (matched pattern "LICEN[CS]E*")
2024-07-16T06:29:05,987   creating build/bdist.linux-armv7l/wheel/graftm-0.15.1.dist-info/WHEEL
2024-07-16T06:29:05,989   creating '/tmp/pip-wheel-i5tv4drd/graftm-0.15.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-07-16T06:29:05,992   adding 'graftm/__init__.py'
2024-07-16T06:29:05,993   adding 'graftm/archive.py'
2024-07-16T06:29:05,995   adding 'graftm/classify.py'
2024-07-16T06:29:05,997   adding 'graftm/clusterer.py'
2024-07-16T06:29:06,001   adding 'graftm/create.py'
2024-07-16T06:29:06,003   adding 'graftm/db_search_results.py'
2024-07-16T06:29:06,004   adding 'graftm/decorator.py'
2024-07-16T06:29:06,006   adding 'graftm/decoy_filter.py'
2024-07-16T06:29:06,007   adding 'graftm/deduplicator.py'
2024-07-16T06:29:06,008   adding 'graftm/dendropy_tree_cleaner.py'
2024-07-16T06:29:06,010   adding 'graftm/diamond.py'
2024-07-16T06:29:06,011   adding 'graftm/expand_searcher.py'
2024-07-16T06:29:06,013   adding 'graftm/external_program_suite.py'
2024-07-16T06:29:06,015   adding 'graftm/getaxnseq.py'
2024-07-16T06:29:06,016   adding 'graftm/graftm_output_paths.py'
2024-07-16T06:29:06,018   adding 'graftm/graftm_package.py'
2024-07-16T06:29:06,019   adding 'graftm/greengenes_taxonomy.py'
2024-07-16T06:29:06,021   adding 'graftm/hmmsearcher.py'
2024-07-16T06:29:06,023   adding 'graftm/housekeeping.py'
2024-07-16T06:29:06,024   adding 'graftm/orfm.py'
2024-07-16T06:29:06,026   adding 'graftm/pplacer.py'
2024-07-16T06:29:06,028   adding 'graftm/readHmmTable.py'
2024-07-16T06:29:06,029   adding 'graftm/reannotator.py'
2024-07-16T06:29:06,031   adding 'graftm/rerooter.py'
2024-07-16T06:29:06,035   adding 'graftm/run.py'
2024-07-16T06:29:06,037   adding 'graftm/search_table.py'
2024-07-16T06:29:06,038   adding 'graftm/sequence_extractor.py'
2024-07-16T06:29:06,039   adding 'graftm/sequence_io.py'
2024-07-16T06:29:06,041   adding 'graftm/sequence_search_results.py'
2024-07-16T06:29:06,047   adding 'graftm/sequence_searcher.py'
2024-07-16T06:29:06,049   adding 'graftm/summarise.py'
2024-07-16T06:29:06,050   adding 'graftm/taxonomy_cleaner.py'
2024-07-16T06:29:06,051   adding 'graftm/taxonomy_extractor.py'
2024-07-16T06:29:06,053   adding 'graftm/timeit.py'
2024-07-16T06:29:06,054   adding 'graftm/tree_decorator.py'
2024-07-16T06:29:06,056   adding 'graftm/unpack_sequences.py'
2024-07-16T06:29:06,058   adding 'graftm/update.py'
2024-07-16T06:29:06,059   adding 'graftm/version.py'
2024-07-16T06:29:06,132   adding 'graftm-0.15.1.data/data/share/18S.hmm'
2024-07-16T06:29:06,138   adding 'graftm-0.15.1.data/scripts/graftM'
2024-07-16T06:29:06,145   adding 'graftm-0.15.1.dist-info/LICENCE.txt'
2024-07-16T06:29:06,147   adding 'graftm-0.15.1.dist-info/METADATA'
2024-07-16T06:29:06,148   adding 'graftm-0.15.1.dist-info/WHEEL'
2024-07-16T06:29:06,149   adding 'graftm-0.15.1.dist-info/top_level.txt'
2024-07-16T06:29:06,150   adding 'graftm-0.15.1.dist-info/RECORD'
2024-07-16T06:29:06,154   removing build/bdist.linux-armv7l/wheel
2024-07-16T06:29:06,266   Building wheel for graftm (setup.py): finished with status 'done'
2024-07-16T06:29:06,270   Created wheel for graftm: filename=graftm-0.15.1-py3-none-any.whl size=206363 sha256=b48f2e0085e37eb107a310940db5b08dc95fe3fc78319b64d500f54fccc70f56
2024-07-16T06:29:06,272   Stored in directory: /tmp/pip-ephem-wheel-cache-i6afj1gg/wheels/e5/5e/90/355cce16bd55f3b2dccd425338d03dd564cf2f127c734d9513
2024-07-16T06:29:06,286 Successfully built graftm
2024-07-16T06:29:06,294 Removed build tracker: '/tmp/pip-build-tracker-36lc3a6p'