2024-07-17T15:12:15,622 Created temporary directory: /tmp/pip-build-tracker-mi4fbxu1
2024-07-17T15:12:15,623 Initialized build tracking at /tmp/pip-build-tracker-mi4fbxu1
2024-07-17T15:12:15,623 Created build tracker: /tmp/pip-build-tracker-mi4fbxu1
2024-07-17T15:12:15,624 Entered build tracker: /tmp/pip-build-tracker-mi4fbxu1
2024-07-17T15:12:15,624 Created temporary directory: /tmp/pip-wheel-639b24ah
2024-07-17T15:12:15,628 Created temporary directory: /tmp/pip-ephem-wheel-cache-3jpjhe4x
2024-07-17T15:12:15,651 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-17T15:12:15,655 2 location(s) to search for versions of moleculekit:
2024-07-17T15:12:15,655 * https://pypi.org/simple/moleculekit/
2024-07-17T15:12:15,655 * https://www.piwheels.org/simple/moleculekit/
2024-07-17T15:12:15,655 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2024-07-17T15:12:15,656 Getting page https://pypi.org/simple/moleculekit/
2024-07-17T15:12:15,658 Found index url https://pypi.org/simple/
2024-07-17T15:12:15,713 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2024-07-17T15:12:15,758   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,758   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2024-07-17T15:12:15,759   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,759   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2024-07-17T15:12:15,759   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,759   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2024-07-17T15:12:15,760   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,760   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2024-07-17T15:12:15,760   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,760   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2024-07-17T15:12:15,760   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,761   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2024-07-17T15:12:15,761   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,761   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2024-07-17T15:12:15,761   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,762   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2024-07-17T15:12:15,762   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,762   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2024-07-17T15:12:15,762   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,763   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2024-07-17T15:12:15,763   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,763   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2024-07-17T15:12:15,763   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,764   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2024-07-17T15:12:15,764   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,764   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2024-07-17T15:12:15,764   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,764   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2024-07-17T15:12:15,765   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,765   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2024-07-17T15:12:15,765   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,765   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2024-07-17T15:12:15,766   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,766   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2024-07-17T15:12:15,766   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,766   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2024-07-17T15:12:15,767   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,767   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2024-07-17T15:12:15,767   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,767   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2024-07-17T15:12:15,767   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,768   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2024-07-17T15:12:15,768   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,768   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2024-07-17T15:12:15,768   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,769   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2024-07-17T15:12:15,769   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,769   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2024-07-17T15:12:15,769   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,769   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2024-07-17T15:12:15,770   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,770   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2024-07-17T15:12:15,770   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,770   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2024-07-17T15:12:15,771   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,771   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2024-07-17T15:12:15,771   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,771   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2024-07-17T15:12:15,772   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,772   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2024-07-17T15:12:15,772   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,772   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2024-07-17T15:12:15,772   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,773   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2024-07-17T15:12:15,773   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2024-07-17T15:12:15,773   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2024-07-17T15:12:15,773   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2024-07-17T15:12:15,790   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2024-07-17T15:12:15,790   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2024-07-17T15:12:15,791   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2024-07-17T15:12:15,791   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2024-07-17T15:12:15,791   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2024-07-17T15:12:15,791   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2024-07-17T15:12:15,792   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2024-07-17T15:12:15,792   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2024-07-17T15:12:15,792   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2024-07-17T15:12:15,792   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2024-07-17T15:12:15,793   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2024-07-17T15:12:15,793   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2024-07-17T15:12:15,793   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2024-07-17T15:12:15,793   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2024-07-17T15:12:15,794   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2024-07-17T15:12:15,794   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2024-07-17T15:12:15,794   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2024-07-17T15:12:15,794   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2024-07-17T15:12:15,795   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2024-07-17T15:12:15,795   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2024-07-17T15:12:15,795   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2024-07-17T15:12:15,795   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2024-07-17T15:12:15,796   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2024-07-17T15:12:15,796   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2024-07-17T15:12:15,796   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2024-07-17T15:12:15,796   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2024-07-17T15:12:15,797   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2024-07-17T15:12:15,797   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2024-07-17T15:12:15,797   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2024-07-17T15:12:15,797   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2024-07-17T15:12:15,798   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2024-07-17T15:12:15,798   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2024-07-17T15:12:15,799   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2024-07-17T15:12:15,799   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2024-07-17T15:12:15,799   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2024-07-17T15:12:15,799   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2024-07-17T15:12:15,800   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2024-07-17T15:12:15,800   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2024-07-17T15:12:15,800   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2024-07-17T15:12:15,800   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2024-07-17T15:12:15,801   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2024-07-17T15:12:15,801   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2024-07-17T15:12:15,801   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2024-07-17T15:12:15,801   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2024-07-17T15:12:15,802   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2024-07-17T15:12:15,802   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2024-07-17T15:12:15,802   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2024-07-17T15:12:15,803   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2024-07-17T15:12:15,803   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2024-07-17T15:12:15,804   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2024-07-17T15:12:15,804   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2024-07-17T15:12:15,805   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2024-07-17T15:12:15,806   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2024-07-17T15:12:15,806   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2024-07-17T15:12:15,807   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2024-07-17T15:12:15,807   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2024-07-17T15:12:15,808   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2024-07-17T15:12:15,808   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2024-07-17T15:12:15,809   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2024-07-17T15:12:15,809   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2024-07-17T15:12:15,810   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2024-07-17T15:12:15,811   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2024-07-17T15:12:15,811   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2024-07-17T15:12:15,812   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2024-07-17T15:12:15,812   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2024-07-17T15:12:15,813   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2024-07-17T15:12:15,813   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2024-07-17T15:12:15,814   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2024-07-17T15:12:15,814   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2024-07-17T15:12:15,815   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2024-07-17T15:12:15,815   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2024-07-17T15:12:15,816   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2024-07-17T15:12:15,816   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2024-07-17T15:12:15,817   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2024-07-17T15:12:15,817   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2024-07-17T15:12:15,818   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2024-07-17T15:12:15,819   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2024-07-17T15:12:15,819   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2024-07-17T15:12:15,820   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2024-07-17T15:12:15,820   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2024-07-17T15:12:15,821   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2024-07-17T15:12:15,821   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2024-07-17T15:12:15,822   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2024-07-17T15:12:15,822   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2024-07-17T15:12:15,823   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2024-07-17T15:12:15,823   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2024-07-17T15:12:15,824   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2024-07-17T15:12:15,824   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2024-07-17T15:12:15,825   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2024-07-17T15:12:15,825   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2024-07-17T15:12:15,826   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2024-07-17T15:12:15,827   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2024-07-17T15:12:15,827   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2024-07-17T15:12:15,828   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2024-07-17T15:12:15,828   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2024-07-17T15:12:15,829   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2024-07-17T15:12:15,829   Found link https://files.pythonhosted.org/packages/36/66/5b4a8da5461b4547e9b3e58f477ddf359701865a7e2ca5b0348fa20f54ae/moleculekit-1.8.18.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.18
2024-07-17T15:12:15,830   Found link https://files.pythonhosted.org/packages/51/33/5a8b10a29ca3c7a893f4a727341611121bc5ec9e2e0004e0c0d4748e33f7/moleculekit-1.8.19.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.19
2024-07-17T15:12:15,830   Found link https://files.pythonhosted.org/packages/0c/02/8cb68afa12c5dac1a7e486d39e9017883f51e17c4fd781898edf79cd2f00/moleculekit-1.8.20.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.20
2024-07-17T15:12:15,831   Found link https://files.pythonhosted.org/packages/65/3f/75e14ea7f71098018974144579774255fc66d1b7f7dae2ff858a87aac1e7/moleculekit-1.8.21.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.21
2024-07-17T15:12:15,831   Found link https://files.pythonhosted.org/packages/2c/2f/d00d1cf86239c509fb4dce470fcaf771e332724034b7db1846332924366a/moleculekit-1.8.22.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.22
2024-07-17T15:12:15,832   Found link https://files.pythonhosted.org/packages/55/ad/3c392a8ef92f6437da30769f6b9770591c79b77604db9aa264d5c0291edf/moleculekit-1.8.23.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.23
2024-07-17T15:12:15,833   Found link https://files.pythonhosted.org/packages/64/72/c2549970c717c236688863287da25f453fbf8b3ea3dee071af9e96be6592/moleculekit-1.8.24.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.24
2024-07-17T15:12:15,833   Found link https://files.pythonhosted.org/packages/f2/d0/2c92a559a74562405f0628bc7880908412790a87c494c9b73e3962c7baa9/moleculekit-1.8.26.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.26
2024-07-17T15:12:15,834   Found link https://files.pythonhosted.org/packages/0e/be/42a9eff89e9e0c3bc08940ead6c991f366ce109bb75ece11cc3b2996d001/moleculekit-1.8.27.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.27
2024-07-17T15:12:15,834   Found link https://files.pythonhosted.org/packages/30/bd/5ed4ddd1b8934c0594027c765bab0013b8081e818e92c2a98462f64d4dcd/moleculekit-1.8.28.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.28
2024-07-17T15:12:15,835   Found link https://files.pythonhosted.org/packages/2a/f9/1d7fe1a09e04049ace7db33faf27c26478ba9674a3cb39d1115fcd1d0679/moleculekit-1.8.29.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.29
2024-07-17T15:12:15,835   Found link https://files.pythonhosted.org/packages/d6/e2/f7f2b1870c62092c3d84ac0055b50305611a1253142cb592babdfcbdb266/moleculekit-1.8.31.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.31
2024-07-17T15:12:15,836   Found link https://files.pythonhosted.org/packages/5a/df/44bc133f3cbda05e621a72b9fef30ecaa96bc88bd5f47136a89b22d82b30/moleculekit-1.8.32.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.32
2024-07-17T15:12:15,836   Found link https://files.pythonhosted.org/packages/2b/34/e2642fe6f54ec67fdba107eb29968217af52f0b6ef1ac69f533164c6584e/moleculekit-1.8.33.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.33
2024-07-17T15:12:15,837   Found link https://files.pythonhosted.org/packages/d4/0f/1b1f0d41c3ff855afca374140213f1c43b3a9659eebc4460899fead843ff/moleculekit-1.8.34.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.34
2024-07-17T15:12:15,837   Found link https://files.pythonhosted.org/packages/26/6b/1104888679e9faf8b0e4e9b15586ea7532e171fe127c06e067c9ad563238/moleculekit-1.8.35.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.35
2024-07-17T15:12:15,838   Found link https://files.pythonhosted.org/packages/cf/5e/035ee54b5606e7489eed8e94571ca014339f5a6959902eff9f40bf4e0d7f/moleculekit-1.8.36.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.36
2024-07-17T15:12:15,838   Found link https://files.pythonhosted.org/packages/38/d6/30462b4aeb3cb9ae0244bc9882779d3249e39393f5ea71c6abc2d36bb1ed/moleculekit-1.9.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.0
2024-07-17T15:12:15,839   Found link https://files.pythonhosted.org/packages/03/ac/c81679ee7481d8dd7e0fa576dafe3963c48c065ab2ca808b53f59693c211/moleculekit-1.9.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.1
2024-07-17T15:12:15,839   Found link https://files.pythonhosted.org/packages/32/f1/d21bc1d0589eb9e230a6f35f2650e452a0f85915c109cf8284747fea3232/moleculekit-1.9.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.2
2024-07-17T15:12:15,840   Found link https://files.pythonhosted.org/packages/ca/05/d8f5b1524d14a61baab43f3e90980410577ccf19eb191053c29e134c534f/moleculekit-1.9.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.3
2024-07-17T15:12:15,841   Found link https://files.pythonhosted.org/packages/83/e9/01c7636faef3dff648a5348a7203cef9ab9dbbde1336a10b21678e4afb1d/moleculekit-1.9.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.4
2024-07-17T15:12:15,841   Found link https://files.pythonhosted.org/packages/a8/33/afb1177a735af7b98585fe5ee5f0643b51243719839610d8743cd43ad281/moleculekit-1.9.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.9.5
2024-07-17T15:12:15,842 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2024-07-17T15:12:15,842 Getting page https://www.piwheels.org/simple/moleculekit/
2024-07-17T15:12:15,843 Found index url https://www.piwheels.org/simple/
2024-07-17T15:12:15,918 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2024-07-17T15:12:16,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.4-cp39-cp39-linux_armv6l.whl#sha256=9dfee3fa315ea38ce8c2b0292f2ffaf6e5142dde58b0b9e14d83d671cdf78b60 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-17T15:12:16,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.4-cp39-cp39-linux_armv7l.whl#sha256=9dfee3fa315ea38ce8c2b0292f2ffaf6e5142dde58b0b9e14d83d671cdf78b60 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-17T15:12:16,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.3-cp39-cp39-linux_armv6l.whl#sha256=737b7930ae3bbd4d7f37ce6a001822add326da11894b0ee79c5963f1e22a9504 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-17T15:12:16,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.3-cp39-cp39-linux_armv7l.whl#sha256=737b7930ae3bbd4d7f37ce6a001822add326da11894b0ee79c5963f1e22a9504 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-17T15:12:16,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.2-cp39-cp39-linux_armv6l.whl#sha256=e5f605262f03ab78ddfad81b85f6a8d5607bc553bf969bd724a5739cab3389fe (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-17T15:12:16,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.2-cp39-cp39-linux_armv7l.whl#sha256=e5f605262f03ab78ddfad81b85f6a8d5607bc553bf969bd724a5739cab3389fe (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-17T15:12:16,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.1-cp39-cp39-linux_armv6l.whl#sha256=7bfd68c4ee35c25aa2569cac08a2934d167dca7b1acd437b5ce788f78566e029 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-17T15:12:16,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.1-cp39-cp39-linux_armv7l.whl#sha256=7bfd68c4ee35c25aa2569cac08a2934d167dca7b1acd437b5ce788f78566e029 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-17T15:12:16,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp311-cp311-linux_armv6l.whl#sha256=d6035d34abe9a702dc48a7b6e979670c6e0eb97db1a3a940dbd9f96bfc42eb03 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-17T15:12:16,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp311-cp311-linux_armv7l.whl#sha256=d6035d34abe9a702dc48a7b6e979670c6e0eb97db1a3a940dbd9f96bfc42eb03 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-17T15:12:16,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp39-cp39-linux_armv6l.whl#sha256=98cbc4f7d5456ab2c8dd35319a4977fe968743136c62077f73fdf423356b3a99 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-17T15:12:16,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.9.0-cp39-cp39-linux_armv7l.whl#sha256=98cbc4f7d5456ab2c8dd35319a4977fe968743136c62077f73fdf423356b3a99 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2024-07-17T15:12:16,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.8.36-cp311-cp311-linux_armv6l.whl#sha256=e0fa24f661e395d9f38f9e1616422ff28e4ed401dd67c35c172ffccf1ea54038 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2024-07-17T15:12:16,066   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-17T15:12:16,066   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,066   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,067   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,068   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,069   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,070   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,071   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,072   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,073   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,073   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,073   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,073   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,073   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,073   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,074   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,074   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,074   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,074   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,074   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,074   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,075   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,075   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,075   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,075   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,075   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,076   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,076   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,076   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,076   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,076   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,076   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,077   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,077   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-17T15:12:16,080   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-17T15:12:16,081   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-17T15:12:16,081   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,081   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,081   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,082   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,082   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-17T15:12:16,082   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,082   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,082   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,083   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,083   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,083   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,083   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,083   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2024-07-17T15:12:16,088   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
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2024-07-17T15:12:16,092 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2024-07-17T15:12:16,093 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2024-07-17T15:12:16,137 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2024-07-17T15:12:16,154 Collecting moleculekit==1.9.5
2024-07-17T15:12:16,156   Created temporary directory: /tmp/pip-unpack-ba7ug97x
2024-07-17T15:12:16,200   Downloading moleculekit-1.9.5.tar.gz (6.8 MB)
2024-07-17T15:12:18,346   Added moleculekit==1.9.5 from https://files.pythonhosted.org/packages/a8/33/afb1177a735af7b98585fe5ee5f0643b51243719839610d8743cd43ad281/moleculekit-1.9.5.tar.gz to build tracker '/tmp/pip-build-tracker-mi4fbxu1'
2024-07-17T15:12:18,354   Created temporary directory: /tmp/pip-build-env-3v9rbj21
2024-07-17T15:12:18,364   Installing build dependencies: started
2024-07-17T15:12:18,365   Running command pip subprocess to install build dependencies
2024-07-17T15:12:19,528   Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2024-07-17T15:12:20,051   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-07-17T15:12:21,537   Collecting setuptools
2024-07-17T15:12:21,553     Using cached https://www.piwheels.org/simple/setuptools/setuptools-70.3.0-py3-none-any.whl (931 kB)
2024-07-17T15:12:22,650   Collecting numpy>=1.18.5
2024-07-17T15:12:22,666     Using cached https://www.piwheels.org/simple/numpy/numpy-2.0.0-cp39-cp39-linux_armv7l.whl (5.8 MB)
2024-07-17T15:12:24,280   Collecting Cython>=0.29.21
2024-07-17T15:12:24,298     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.10-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-07-17T15:12:24,663   Collecting toml
2024-07-17T15:12:24,679     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2024-07-17T15:12:24,780   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2024-07-17T15:12:24,799     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2024-07-17T15:12:24,936   Collecting tomli (from versioneer[toml]==0.28)
2024-07-17T15:12:24,951     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2024-07-17T15:12:26,777   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2024-07-17T15:12:26,812     Creating /tmp/pip-build-env-3v9rbj21/overlay/bin
2024-07-17T15:12:26,814     changing mode of /tmp/pip-build-env-3v9rbj21/overlay/bin/versioneer to 755
2024-07-17T15:12:37,078     changing mode of /tmp/pip-build-env-3v9rbj21/overlay/bin/f2py to 755
2024-07-17T15:12:37,080     changing mode of /tmp/pip-build-env-3v9rbj21/overlay/bin/numpy-config to 755
2024-07-17T15:12:40,463     changing mode of /tmp/pip-build-env-3v9rbj21/overlay/bin/cygdb to 755
2024-07-17T15:12:40,465     changing mode of /tmp/pip-build-env-3v9rbj21/overlay/bin/cython to 755
2024-07-17T15:12:40,467     changing mode of /tmp/pip-build-env-3v9rbj21/overlay/bin/cythonize to 755
2024-07-17T15:12:40,492   Successfully installed Cython-3.0.10 numpy-2.0.0 setuptools-70.3.0 toml-0.10.2 tomli-2.0.1 versioneer-0.28

2024-07-17T15:12:40,673   [notice] A new release of pip is available: 24.0 -> 24.1.2
2024-07-17T15:12:40,673   [notice] To update, run: python3 -m pip install --upgrade pip
2024-07-17T15:12:41,147   Installing build dependencies: finished with status 'done'
2024-07-17T15:12:41,151   Getting requirements to build wheel: started
2024-07-17T15:12:41,152   Running command Getting requirements to build wheel
2024-07-17T15:13:20,050   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2024-07-17T15:13:29,441   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-17T15:13:29,441   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-17T15:13:29,441   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-17T15:13:29,441   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-17T15:13:29,442   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-17T15:13:29,442   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-17T15:13:29,442   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-17T15:13:29,442   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-17T15:13:29,442   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-17T15:13:29,442   Compiling moleculekit/cython_utils/cython_utils.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-17T15:13:29,442   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-17T15:13:29,443   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-17T15:13:29,443   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-17T15:13:29,443   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-07-17T15:13:29,443   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-07-17T15:13:29,443   [ 1/15] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2024-07-17T15:13:29,443   [ 2/15] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2024-07-17T15:13:29,443   [ 3/15] Cythonizing moleculekit/cython_utils/cython_utils.pyx
2024-07-17T15:13:29,444   [ 4/15] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2024-07-17T15:13:29,444   [ 5/15] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2024-07-17T15:13:29,444   [ 6/15] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2024-07-17T15:13:29,444   [ 7/15] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2024-07-17T15:13:29,444   [ 8/15] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2024-07-17T15:13:29,444   [ 9/15] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2024-07-17T15:13:29,444   [10/15] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2024-07-17T15:13:29,444   [11/15] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2024-07-17T15:13:29,445   [12/15] Cythonizing moleculekit/wrapping/wrapping.pyx
2024-07-17T15:13:29,445   [13/15] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2024-07-17T15:13:29,445   [14/15] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2024-07-17T15:13:29,445   [15/15] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2024-07-17T15:13:29,754   running egg_info
2024-07-17T15:13:29,761   writing moleculekit.egg-info/PKG-INFO
2024-07-17T15:13:29,764   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-07-17T15:13:29,767   writing requirements to moleculekit.egg-info/requires.txt
2024-07-17T15:13:29,768   writing top-level names to moleculekit.egg-info/top_level.txt
2024-07-17T15:13:29,800   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,800   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,800   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,800   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,801   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,801   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,801   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,801   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,801   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,801   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,801   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,802   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,802   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,802   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,802   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,802   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,802   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,802   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,802   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,803   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,803   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,803   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,803   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,803   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,803   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,803   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,803   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,804   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,804   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,804   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,804   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,804   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,804   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,804   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,804   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,805   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,805   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,805   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,805   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,805   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,805   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,805   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,805   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,806   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,806   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,806   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,806   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,806   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,806   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,806   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,807   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,807   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,807   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,807   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,807   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,807   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,808   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,808   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,808   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,808   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,810   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,810   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,810   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,810   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,810   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,811   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,811   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,811   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,812   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,812   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,813   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,813   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,813   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,813   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,813   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:29,828   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-17T15:13:29,861   reading manifest template 'MANIFEST.in'
2024-07-17T15:13:30,111   no previously-included directories found matching 'moleculekit/test-data'
2024-07-17T15:13:30,112   no previously-included directories found matching 'moleculekit/tests'
2024-07-17T15:13:30,113   no previously-included directories found matching 'package'
2024-07-17T15:13:30,113   adding license file 'LICENSE'
2024-07-17T15:13:30,132   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-17T15:13:31,762   Getting requirements to build wheel: finished with status 'done'
2024-07-17T15:13:31,766   Created temporary directory: /tmp/pip-modern-metadata-dy4jimsj
2024-07-17T15:13:31,769   Preparing metadata (pyproject.toml): started
2024-07-17T15:13:31,770   Running command Preparing metadata (pyproject.toml)
2024-07-17T15:13:34,210   running dist_info
2024-07-17T15:13:34,212   creating /tmp/pip-modern-metadata-dy4jimsj/moleculekit.egg-info
2024-07-17T15:13:34,217   writing /tmp/pip-modern-metadata-dy4jimsj/moleculekit.egg-info/PKG-INFO
2024-07-17T15:13:34,221   writing dependency_links to /tmp/pip-modern-metadata-dy4jimsj/moleculekit.egg-info/dependency_links.txt
2024-07-17T15:13:34,223   writing requirements to /tmp/pip-modern-metadata-dy4jimsj/moleculekit.egg-info/requires.txt
2024-07-17T15:13:34,224   writing top-level names to /tmp/pip-modern-metadata-dy4jimsj/moleculekit.egg-info/top_level.txt
2024-07-17T15:13:34,226   writing manifest file '/tmp/pip-modern-metadata-dy4jimsj/moleculekit.egg-info/SOURCES.txt'
2024-07-17T15:13:34,250   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,251   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,251   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,251   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,251   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,251   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,252   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,252   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,252   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,252   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,252   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,252   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,252   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,253   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,253   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,253   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,253   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,253   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,253   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,253   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,254   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,254   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,254   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,254   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,254   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,254   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,255   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,255   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,255   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,255   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,255   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,256   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,256   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,256   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,256   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,256   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,256   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,256   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,257   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,257   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,257   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,257   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,257   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,257   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,258   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,258   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,258   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,258   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,258   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,258   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,258   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,259   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,259   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,259   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,259   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,259   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,259   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,260   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,260   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,260   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,261   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,262   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,262   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,262   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,262   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,263   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,263   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,263   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,263   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,263   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,264   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,264   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,264   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,264   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,265   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:34,270   reading manifest file '/tmp/pip-modern-metadata-dy4jimsj/moleculekit.egg-info/SOURCES.txt'
2024-07-17T15:13:34,273   reading manifest template 'MANIFEST.in'
2024-07-17T15:13:34,514   no previously-included directories found matching 'moleculekit/test-data'
2024-07-17T15:13:34,515   no previously-included directories found matching 'moleculekit/tests'
2024-07-17T15:13:34,517   no previously-included directories found matching 'package'
2024-07-17T15:13:34,517   adding license file 'LICENSE'
2024-07-17T15:13:34,530   writing manifest file '/tmp/pip-modern-metadata-dy4jimsj/moleculekit.egg-info/SOURCES.txt'
2024-07-17T15:13:34,539   creating '/tmp/pip-modern-metadata-dy4jimsj/moleculekit-1.9.5.dist-info'
2024-07-17T15:13:34,843   Preparing metadata (pyproject.toml): finished with status 'done'
2024-07-17T15:13:34,849   Source in /tmp/pip-wheel-639b24ah/moleculekit_1860804b3e5e47bc979015d064d39b2f has version 1.9.5, which satisfies requirement moleculekit==1.9.5 from https://files.pythonhosted.org/packages/a8/33/afb1177a735af7b98585fe5ee5f0643b51243719839610d8743cd43ad281/moleculekit-1.9.5.tar.gz
2024-07-17T15:13:34,850   Removed moleculekit==1.9.5 from https://files.pythonhosted.org/packages/a8/33/afb1177a735af7b98585fe5ee5f0643b51243719839610d8743cd43ad281/moleculekit-1.9.5.tar.gz from build tracker '/tmp/pip-build-tracker-mi4fbxu1'
2024-07-17T15:13:34,856 Created temporary directory: /tmp/pip-unpack-ndfmiq2w
2024-07-17T15:13:34,857 Created temporary directory: /tmp/pip-unpack-qronkr7_
2024-07-17T15:13:34,865 Building wheels for collected packages: moleculekit
2024-07-17T15:13:34,869   Created temporary directory: /tmp/pip-wheel-4g2f3n9t
2024-07-17T15:13:34,870   Destination directory: /tmp/pip-wheel-4g2f3n9t
2024-07-17T15:13:34,872   Building wheel for moleculekit (pyproject.toml): started
2024-07-17T15:13:34,873   Running command Building wheel for moleculekit (pyproject.toml)
2024-07-17T15:13:37,151   running bdist_wheel
2024-07-17T15:13:37,167   running build
2024-07-17T15:13:37,167   running build_py
2024-07-17T15:13:37,175   creating build
2024-07-17T15:13:37,175   creating build/lib.linux-armv7l-cpython-39
2024-07-17T15:13:37,176   creating build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,177   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,179   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,182   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,183   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,185   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,187   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,189   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,190   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,193   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,194   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,198   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,199   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,205   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,208   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,209   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,215   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,217   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,218   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,220   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,222   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,225   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,227   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-17T15:13:37,228   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-17T15:13:37,231   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-17T15:13:37,233   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-17T15:13:37,236   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,237   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,239   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,240   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,243   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,245   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,247   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,249   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,251   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,254   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,256   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,258   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,260   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,263   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,266   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,268   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2024-07-17T15:13:37,271   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-17T15:13:37,271   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-17T15:13:37,274   copying moleculekit/smallmol/smallmolcdp.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-17T15:13:37,276   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-17T15:13:37,278   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-17T15:13:37,281   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-17T15:13:37,283   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-17T15:13:37,285   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2024-07-17T15:13:37,288   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-07-17T15:13:37,289   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2024-07-17T15:13:37,291   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-17T15:13:37,291   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-17T15:13:37,293   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-17T15:13:37,298   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2024-07-17T15:13:37,302   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-17T15:13:37,302   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-17T15:13:37,305   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-17T15:13:37,308   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-17T15:13:37,308   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-17T15:13:37,311   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-17T15:13:37,313   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-17T15:13:37,315   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2024-07-17T15:13:37,318   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,319   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,321   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,323   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,325   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,328   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,330   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,332   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,335   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,336   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,338   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,342   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,344   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,346   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,349   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2024-07-17T15:13:37,351   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-17T15:13:37,352   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-17T15:13:37,354   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-17T15:13:37,355   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-17T15:13:37,358   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2024-07-17T15:13:37,361   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-17T15:13:37,362   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-17T15:13:37,364   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-17T15:13:37,365   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-17T15:13:37,368   copying moleculekit/pdbx/reader/BinaryCifReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-17T15:13:37,371   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2024-07-17T15:13:37,374   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-17T15:13:37,375   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-17T15:13:37,377   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2024-07-17T15:13:37,379   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-17T15:13:37,380   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-17T15:13:37,382   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-17T15:13:37,384   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-17T15:13:37,386   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2024-07-17T15:13:37,388   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-17T15:13:37,389   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-17T15:13:37,390   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2024-07-17T15:13:37,392   running egg_info
2024-07-17T15:13:37,397   writing moleculekit.egg-info/PKG-INFO
2024-07-17T15:13:37,401   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2024-07-17T15:13:37,402   writing requirements to moleculekit.egg-info/requires.txt
2024-07-17T15:13:37,403   writing top-level names to moleculekit.egg-info/top_level.txt
2024-07-17T15:13:37,422   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,423   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,423   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,423   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,423   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,423   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,423   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,423   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,424   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,424   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,424   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,424   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,424   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,424   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,424   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,424   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,425   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,425   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,425   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,425   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,425   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,425   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,425   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,425   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,426   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,426   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,426   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,426   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,426   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,426   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,426   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,427   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,427   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,427   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,427   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,427   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,427   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,427   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,427   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,428   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,428   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,428   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,428   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,428   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,428   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,428   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,428   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,429   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,429   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,429   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,429   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,429   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,429   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,429   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,429   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,430   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,430   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,430   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,430   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,430   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,432   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,432   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,432   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,432   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,432   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,433   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,433   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,433   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,433   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,433   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,434   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,434   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,434   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,435   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,435   dependency /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-07-17T15:13:37,440   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-17T15:13:37,450   reading manifest template 'MANIFEST.in'
2024-07-17T15:13:37,713   no previously-included directories found matching 'moleculekit/test-data'
2024-07-17T15:13:37,714   no previously-included directories found matching 'moleculekit/tests'
2024-07-17T15:13:37,716   no previously-included directories found matching 'package'
2024-07-17T15:13:37,716   adding license file 'LICENSE'
2024-07-17T15:13:37,734   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2024-07-17T15:13:37,745   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2024-07-17T15:13:37,745   !!

2024-07-17T15:13:37,746           ********************************************************************************
2024-07-17T15:13:37,746           ############################
2024-07-17T15:13:37,746           # Package would be ignored #
2024-07-17T15:13:37,746           ############################
2024-07-17T15:13:37,746           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2024-07-17T15:13:37,746           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,747           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,747           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2024-07-17T15:13:37,747           to the `packages` configuration field.

2024-07-17T15:13:37,747           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,747           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,747           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,748           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,748           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,748           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2024-07-17T15:13:37,748           already explicitly excluding 'moleculekit.atomselect_utils' via
2024-07-17T15:13:37,748           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,748           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,748           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,749           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,749           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,749           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,749                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,750                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,750                 directory, all directories are treated like packages.
2024-07-17T15:13:37,750           ********************************************************************************

2024-07-17T15:13:37,750   !!
2024-07-17T15:13:37,750     check.warn(importable)
2024-07-17T15:13:37,750   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2024-07-17T15:13:37,750   !!

2024-07-17T15:13:37,751           ********************************************************************************
2024-07-17T15:13:37,751           ############################
2024-07-17T15:13:37,751           # Package would be ignored #
2024-07-17T15:13:37,751           ############################
2024-07-17T15:13:37,751           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2024-07-17T15:13:37,751           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,751           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,752           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2024-07-17T15:13:37,752           to the `packages` configuration field.

2024-07-17T15:13:37,752           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,752           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,752           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,752           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,753           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,753           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2024-07-17T15:13:37,753           already explicitly excluding 'moleculekit.bondguesser_utils' via
2024-07-17T15:13:37,753           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,753           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,753           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,753           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,754           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,754           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,754                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,754                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,754                 directory, all directories are treated like packages.
2024-07-17T15:13:37,755           ********************************************************************************

2024-07-17T15:13:37,755   !!
2024-07-17T15:13:37,755     check.warn(importable)
2024-07-17T15:13:37,755   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.cython_utils' is absent from the `packages` configuration.
2024-07-17T15:13:37,755   !!

2024-07-17T15:13:37,755           ********************************************************************************
2024-07-17T15:13:37,755           ############################
2024-07-17T15:13:37,756           # Package would be ignored #
2024-07-17T15:13:37,756           ############################
2024-07-17T15:13:37,756           Python recognizes 'moleculekit.cython_utils' as an importable package[^1],
2024-07-17T15:13:37,756           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,756           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,756           package, please make sure that 'moleculekit.cython_utils' is explicitly added
2024-07-17T15:13:37,756           to the `packages` configuration field.

2024-07-17T15:13:37,757           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,757           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,757           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,757           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,757           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,757           If you don't want 'moleculekit.cython_utils' to be distributed and are
2024-07-17T15:13:37,758           already explicitly excluding 'moleculekit.cython_utils' via
2024-07-17T15:13:37,758           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,758           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,758           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,758           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,758           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,759           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,759                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,759                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,759                 directory, all directories are treated like packages.
2024-07-17T15:13:37,759           ********************************************************************************

2024-07-17T15:13:37,759   !!
2024-07-17T15:13:37,759     check.warn(importable)
2024-07-17T15:13:37,759   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2024-07-17T15:13:37,759   !!

2024-07-17T15:13:37,760           ********************************************************************************
2024-07-17T15:13:37,760           ############################
2024-07-17T15:13:37,760           # Package would be ignored #
2024-07-17T15:13:37,760           ############################
2024-07-17T15:13:37,760           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2024-07-17T15:13:37,760           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,760           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,761           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2024-07-17T15:13:37,761           to the `packages` configuration field.

2024-07-17T15:13:37,761           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,761           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,761           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,761           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,761           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,762           If you don't want 'moleculekit.distance_utils' to be distributed and are
2024-07-17T15:13:37,762           already explicitly excluding 'moleculekit.distance_utils' via
2024-07-17T15:13:37,762           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,762           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,762           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,762           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,762           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,763           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,763                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,763                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,763                 directory, all directories are treated like packages.
2024-07-17T15:13:37,763           ********************************************************************************

2024-07-17T15:13:37,763   !!
2024-07-17T15:13:37,764     check.warn(importable)
2024-07-17T15:13:37,764   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2024-07-17T15:13:37,764   !!

2024-07-17T15:13:37,764           ********************************************************************************
2024-07-17T15:13:37,764           ############################
2024-07-17T15:13:37,764           # Package would be ignored #
2024-07-17T15:13:37,764           ############################
2024-07-17T15:13:37,764           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2024-07-17T15:13:37,764           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,765           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,765           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2024-07-17T15:13:37,765           to the `packages` configuration field.

2024-07-17T15:13:37,765           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,765           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,765           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,765           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,766           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,766           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2024-07-17T15:13:37,766           already explicitly excluding 'moleculekit.fileformats.binpos' via
2024-07-17T15:13:37,766           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,766           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,766           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,767           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,767           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,767           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,767                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,767                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,768                 directory, all directories are treated like packages.
2024-07-17T15:13:37,768           ********************************************************************************

2024-07-17T15:13:37,768   !!
2024-07-17T15:13:37,768     check.warn(importable)
2024-07-17T15:13:37,768   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2024-07-17T15:13:37,768   !!

2024-07-17T15:13:37,768           ********************************************************************************
2024-07-17T15:13:37,768           ############################
2024-07-17T15:13:37,769           # Package would be ignored #
2024-07-17T15:13:37,769           ############################
2024-07-17T15:13:37,769           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2024-07-17T15:13:37,769           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,769           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,769           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2024-07-17T15:13:37,769           to the `packages` configuration field.

2024-07-17T15:13:37,770           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,770           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,770           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,770           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,770           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,770           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2024-07-17T15:13:37,771           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2024-07-17T15:13:37,771           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,771           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,771           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,771           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,771           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,772           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,772                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,772                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,772                 directory, all directories are treated like packages.
2024-07-17T15:13:37,772           ********************************************************************************

2024-07-17T15:13:37,772   !!
2024-07-17T15:13:37,772     check.warn(importable)
2024-07-17T15:13:37,773   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2024-07-17T15:13:37,773   !!

2024-07-17T15:13:37,773           ********************************************************************************
2024-07-17T15:13:37,773           ############################
2024-07-17T15:13:37,773           # Package would be ignored #
2024-07-17T15:13:37,773           ############################
2024-07-17T15:13:37,773           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2024-07-17T15:13:37,773           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,774           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,774           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2024-07-17T15:13:37,774           to the `packages` configuration field.

2024-07-17T15:13:37,774           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,774           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,774           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,774           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,775           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,775           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2024-07-17T15:13:37,775           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2024-07-17T15:13:37,775           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,775           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,775           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,776           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,776           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,776           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,776                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,776                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,776                 directory, all directories are treated like packages.
2024-07-17T15:13:37,777           ********************************************************************************

2024-07-17T15:13:37,777   !!
2024-07-17T15:13:37,777     check.warn(importable)
2024-07-17T15:13:37,777   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2024-07-17T15:13:37,777   !!

2024-07-17T15:13:37,777           ********************************************************************************
2024-07-17T15:13:37,777           ############################
2024-07-17T15:13:37,778           # Package would be ignored #
2024-07-17T15:13:37,778           ############################
2024-07-17T15:13:37,778           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2024-07-17T15:13:37,778           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,778           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,778           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2024-07-17T15:13:37,778           to the `packages` configuration field.

2024-07-17T15:13:37,778           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,779           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,779           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,779           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,779           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,779           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2024-07-17T15:13:37,779           already explicitly excluding 'moleculekit.fileformats.dcd' via
2024-07-17T15:13:37,780           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,780           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,780           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,780           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,780           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,781           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,781                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,781                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,781                 directory, all directories are treated like packages.
2024-07-17T15:13:37,781           ********************************************************************************

2024-07-17T15:13:37,781   !!
2024-07-17T15:13:37,781     check.warn(importable)
2024-07-17T15:13:37,781   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2024-07-17T15:13:37,782   !!

2024-07-17T15:13:37,782           ********************************************************************************
2024-07-17T15:13:37,782           ############################
2024-07-17T15:13:37,782           # Package would be ignored #
2024-07-17T15:13:37,782           ############################
2024-07-17T15:13:37,782           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2024-07-17T15:13:37,782           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,783           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,783           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2024-07-17T15:13:37,783           to the `packages` configuration field.

2024-07-17T15:13:37,783           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,783           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,783           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,783           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,784           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,784           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2024-07-17T15:13:37,784           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2024-07-17T15:13:37,784           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,784           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,784           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,785           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,785           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,785           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,785                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,785                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,785                 directory, all directories are treated like packages.
2024-07-17T15:13:37,786           ********************************************************************************

2024-07-17T15:13:37,786   !!
2024-07-17T15:13:37,786     check.warn(importable)
2024-07-17T15:13:37,786   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2024-07-17T15:13:37,786   !!

2024-07-17T15:13:37,786           ********************************************************************************
2024-07-17T15:13:37,787           ############################
2024-07-17T15:13:37,787           # Package would be ignored #
2024-07-17T15:13:37,787           ############################
2024-07-17T15:13:37,787           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2024-07-17T15:13:37,787           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,787           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,787           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2024-07-17T15:13:37,787           to the `packages` configuration field.

2024-07-17T15:13:37,788           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,788           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,788           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,788           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,788           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,789           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2024-07-17T15:13:37,789           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2024-07-17T15:13:37,789           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,789           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,789           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,789           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,789           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,790           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,790                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,790                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,790                 directory, all directories are treated like packages.
2024-07-17T15:13:37,790           ********************************************************************************

2024-07-17T15:13:37,790   !!
2024-07-17T15:13:37,790     check.warn(importable)
2024-07-17T15:13:37,791   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2024-07-17T15:13:37,791   !!

2024-07-17T15:13:37,791           ********************************************************************************
2024-07-17T15:13:37,791           ############################
2024-07-17T15:13:37,791           # Package would be ignored #
2024-07-17T15:13:37,791           ############################
2024-07-17T15:13:37,791           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2024-07-17T15:13:37,791           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,792           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,792           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2024-07-17T15:13:37,792           to the `packages` configuration field.

2024-07-17T15:13:37,792           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,792           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,792           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,792           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,793           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,793           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2024-07-17T15:13:37,793           already explicitly excluding 'moleculekit.fileformats.xtc' via
2024-07-17T15:13:37,793           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,793           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,793           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,793           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,794           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,794           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,794                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,794                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,794                 directory, all directories are treated like packages.
2024-07-17T15:13:37,794           ********************************************************************************

2024-07-17T15:13:37,795   !!
2024-07-17T15:13:37,795     check.warn(importable)
2024-07-17T15:13:37,795   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2024-07-17T15:13:37,795   !!

2024-07-17T15:13:37,795           ********************************************************************************
2024-07-17T15:13:37,795           ############################
2024-07-17T15:13:37,795           # Package would be ignored #
2024-07-17T15:13:37,796           ############################
2024-07-17T15:13:37,796           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2024-07-17T15:13:37,796           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,796           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,796           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2024-07-17T15:13:37,796           to the `packages` configuration field.

2024-07-17T15:13:37,796           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,797           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,797           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,797           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,797           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,797           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2024-07-17T15:13:37,797           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2024-07-17T15:13:37,797           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,798           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,798           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,798           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,798           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,798           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,799                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,799                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,799                 directory, all directories are treated like packages.
2024-07-17T15:13:37,799           ********************************************************************************

2024-07-17T15:13:37,799   !!
2024-07-17T15:13:37,799     check.warn(importable)
2024-07-17T15:13:37,799   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2024-07-17T15:13:37,799   !!

2024-07-17T15:13:37,800           ********************************************************************************
2024-07-17T15:13:37,800           ############################
2024-07-17T15:13:37,800           # Package would be ignored #
2024-07-17T15:13:37,800           ############################
2024-07-17T15:13:37,800           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2024-07-17T15:13:37,800           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,800           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,800           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2024-07-17T15:13:37,801           to the `packages` configuration field.

2024-07-17T15:13:37,801           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,801           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,801           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,801           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,802           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,802           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2024-07-17T15:13:37,802           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2024-07-17T15:13:37,802           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,802           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,802           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,802           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,803           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,803           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,803                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,803                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,803                 directory, all directories are treated like packages.
2024-07-17T15:13:37,803           ********************************************************************************

2024-07-17T15:13:37,804   !!
2024-07-17T15:13:37,804     check.warn(importable)
2024-07-17T15:13:37,804   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2024-07-17T15:13:37,804   !!

2024-07-17T15:13:37,804           ********************************************************************************
2024-07-17T15:13:37,804           ############################
2024-07-17T15:13:37,805           # Package would be ignored #
2024-07-17T15:13:37,805           ############################
2024-07-17T15:13:37,805           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2024-07-17T15:13:37,805           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,805           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,805           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2024-07-17T15:13:37,805           to the `packages` configuration field.

2024-07-17T15:13:37,806           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,806           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,806           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,806           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,806           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,807           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2024-07-17T15:13:37,807           already explicitly excluding 'moleculekit.interactions.cationpi' via
2024-07-17T15:13:37,807           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,807           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,807           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,807           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,808           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,808           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,808                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,808                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,808                 directory, all directories are treated like packages.
2024-07-17T15:13:37,809           ********************************************************************************

2024-07-17T15:13:37,809   !!
2024-07-17T15:13:37,809     check.warn(importable)
2024-07-17T15:13:37,809   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2024-07-17T15:13:37,809   !!

2024-07-17T15:13:37,809           ********************************************************************************
2024-07-17T15:13:37,810           ############################
2024-07-17T15:13:37,810           # Package would be ignored #
2024-07-17T15:13:37,810           ############################
2024-07-17T15:13:37,810           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2024-07-17T15:13:37,810           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,810           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,810           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2024-07-17T15:13:37,811           to the `packages` configuration field.

2024-07-17T15:13:37,811           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,811           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,811           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,811           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,812           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,812           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2024-07-17T15:13:37,812           already explicitly excluding 'moleculekit.interactions.hbonds' via
2024-07-17T15:13:37,812           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,812           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,812           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,813           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,813           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,813           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,813                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,813                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,814                 directory, all directories are treated like packages.
2024-07-17T15:13:37,814           ********************************************************************************

2024-07-17T15:13:37,814   !!
2024-07-17T15:13:37,814     check.warn(importable)
2024-07-17T15:13:37,814   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2024-07-17T15:13:37,814   !!

2024-07-17T15:13:37,815           ********************************************************************************
2024-07-17T15:13:37,815           ############################
2024-07-17T15:13:37,815           # Package would be ignored #
2024-07-17T15:13:37,815           ############################
2024-07-17T15:13:37,815           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2024-07-17T15:13:37,815           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,815           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,816           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2024-07-17T15:13:37,816           to the `packages` configuration field.

2024-07-17T15:13:37,816           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,816           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,816           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,816           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,817           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,817           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2024-07-17T15:13:37,817           already explicitly excluding 'moleculekit.interactions.pipi' via
2024-07-17T15:13:37,817           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,817           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,817           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,818           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,818           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,818           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,818                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,818                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,818                 directory, all directories are treated like packages.
2024-07-17T15:13:37,819           ********************************************************************************

2024-07-17T15:13:37,819   !!
2024-07-17T15:13:37,819     check.warn(importable)
2024-07-17T15:13:37,819   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2024-07-17T15:13:37,819   !!

2024-07-17T15:13:37,819           ********************************************************************************
2024-07-17T15:13:37,820           ############################
2024-07-17T15:13:37,820           # Package would be ignored #
2024-07-17T15:13:37,820           ############################
2024-07-17T15:13:37,820           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2024-07-17T15:13:37,820           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,820           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,820           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2024-07-17T15:13:37,821           to the `packages` configuration field.

2024-07-17T15:13:37,821           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,821           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,821           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,821           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,821           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,822           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2024-07-17T15:13:37,822           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2024-07-17T15:13:37,822           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,822           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,822           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,822           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,823           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,823           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,823                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,823                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,823                 directory, all directories are treated like packages.
2024-07-17T15:13:37,824           ********************************************************************************

2024-07-17T15:13:37,824   !!
2024-07-17T15:13:37,824     check.warn(importable)
2024-07-17T15:13:37,824   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2024-07-17T15:13:37,824   !!

2024-07-17T15:13:37,824           ********************************************************************************
2024-07-17T15:13:37,825           ############################
2024-07-17T15:13:37,825           # Package would be ignored #
2024-07-17T15:13:37,825           ############################
2024-07-17T15:13:37,825           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2024-07-17T15:13:37,825           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,825           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,825           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2024-07-17T15:13:37,826           to the `packages` configuration field.

2024-07-17T15:13:37,826           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,826           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,826           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,826           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,827           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,827           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2024-07-17T15:13:37,827           already explicitly excluding 'moleculekit.occupancy_utils' via
2024-07-17T15:13:37,827           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,827           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,827           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,828           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,828           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,828           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,828                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,828                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,829                 directory, all directories are treated like packages.
2024-07-17T15:13:37,829           ********************************************************************************

2024-07-17T15:13:37,829   !!
2024-07-17T15:13:37,829     check.warn(importable)
2024-07-17T15:13:37,829   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2024-07-17T15:13:37,829   !!

2024-07-17T15:13:37,829           ********************************************************************************
2024-07-17T15:13:37,830           ############################
2024-07-17T15:13:37,830           # Package would be ignored #
2024-07-17T15:13:37,830           ############################
2024-07-17T15:13:37,830           Python recognizes 'moleculekit.share' as an importable package[^1],
2024-07-17T15:13:37,830           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,830           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,830           package, please make sure that 'moleculekit.share' is explicitly added
2024-07-17T15:13:37,831           to the `packages` configuration field.

2024-07-17T15:13:37,831           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,831           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,831           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,831           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,832           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,832           If you don't want 'moleculekit.share' to be distributed and are
2024-07-17T15:13:37,832           already explicitly excluding 'moleculekit.share' via
2024-07-17T15:13:37,832           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,832           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,832           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,833           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,833           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,833           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,833                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,833                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,834                 directory, all directories are treated like packages.
2024-07-17T15:13:37,834           ********************************************************************************

2024-07-17T15:13:37,834   !!
2024-07-17T15:13:37,834     check.warn(importable)
2024-07-17T15:13:37,834   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2024-07-17T15:13:37,834   !!

2024-07-17T15:13:37,835           ********************************************************************************
2024-07-17T15:13:37,835           ############################
2024-07-17T15:13:37,835           # Package would be ignored #
2024-07-17T15:13:37,835           ############################
2024-07-17T15:13:37,835           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2024-07-17T15:13:37,835           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,835           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,835           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2024-07-17T15:13:37,836           to the `packages` configuration field.

2024-07-17T15:13:37,836           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,836           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,836           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,836           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,837           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,837           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2024-07-17T15:13:37,837           already explicitly excluding 'moleculekit.share.atomselect' via
2024-07-17T15:13:37,837           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,837           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,837           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,838           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,838           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,838           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,838                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,838                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,839                 directory, all directories are treated like packages.
2024-07-17T15:13:37,839           ********************************************************************************

2024-07-17T15:13:37,839   !!
2024-07-17T15:13:37,839     check.warn(importable)
2024-07-17T15:13:37,839   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2024-07-17T15:13:37,839   !!

2024-07-17T15:13:37,840           ********************************************************************************
2024-07-17T15:13:37,840           ############################
2024-07-17T15:13:37,840           # Package would be ignored #
2024-07-17T15:13:37,840           ############################
2024-07-17T15:13:37,840           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2024-07-17T15:13:37,840           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,841           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,841           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2024-07-17T15:13:37,841           to the `packages` configuration field.

2024-07-17T15:13:37,841           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,841           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,841           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,842           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,842           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,842           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2024-07-17T15:13:37,842           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2024-07-17T15:13:37,842           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,842           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,842           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,843           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,843           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,843           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,843                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,843                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,844                 directory, all directories are treated like packages.
2024-07-17T15:13:37,844           ********************************************************************************

2024-07-17T15:13:37,844   !!
2024-07-17T15:13:37,844     check.warn(importable)
2024-07-17T15:13:37,844   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2024-07-17T15:13:37,844   !!

2024-07-17T15:13:37,845           ********************************************************************************
2024-07-17T15:13:37,845           ############################
2024-07-17T15:13:37,845           # Package would be ignored #
2024-07-17T15:13:37,845           ############################
2024-07-17T15:13:37,845           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2024-07-17T15:13:37,845           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,845           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,845           package, please make sure that 'moleculekit.tmalign' is explicitly added
2024-07-17T15:13:37,846           to the `packages` configuration field.

2024-07-17T15:13:37,846           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,846           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,846           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,846           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,847           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,847           If you don't want 'moleculekit.tmalign' to be distributed and are
2024-07-17T15:13:37,847           already explicitly excluding 'moleculekit.tmalign' via
2024-07-17T15:13:37,847           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,848           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,848           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,848           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,848           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,849           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,849                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,849                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,849                 directory, all directories are treated like packages.
2024-07-17T15:13:37,849           ********************************************************************************

2024-07-17T15:13:37,850   !!
2024-07-17T15:13:37,850     check.warn(importable)
2024-07-17T15:13:37,850   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2024-07-17T15:13:37,850   !!

2024-07-17T15:13:37,850           ********************************************************************************
2024-07-17T15:13:37,850           ############################
2024-07-17T15:13:37,850           # Package would be ignored #
2024-07-17T15:13:37,851           ############################
2024-07-17T15:13:37,851           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2024-07-17T15:13:37,851           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,851           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,851           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2024-07-17T15:13:37,851           to the `packages` configuration field.

2024-07-17T15:13:37,852           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,852           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,852           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,852           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,852           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,853           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2024-07-17T15:13:37,853           already explicitly excluding 'moleculekit.tmalign.include' via
2024-07-17T15:13:37,853           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,853           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,853           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,853           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,854           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,854           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,854                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,854                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,854                 directory, all directories are treated like packages.
2024-07-17T15:13:37,854           ********************************************************************************

2024-07-17T15:13:37,855   !!
2024-07-17T15:13:37,855     check.warn(importable)
2024-07-17T15:13:37,855   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2024-07-17T15:13:37,855   !!

2024-07-17T15:13:37,855           ********************************************************************************
2024-07-17T15:13:37,855           ############################
2024-07-17T15:13:37,856           # Package would be ignored #
2024-07-17T15:13:37,856           ############################
2024-07-17T15:13:37,856           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2024-07-17T15:13:37,856           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,856           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,856           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2024-07-17T15:13:37,856           to the `packages` configuration field.

2024-07-17T15:13:37,857           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,857           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,857           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,857           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,857           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,858           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2024-07-17T15:13:37,858           already explicitly excluding 'moleculekit.tmalign.src' via
2024-07-17T15:13:37,858           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,858           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,858           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,858           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,859           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,859           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,859                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,859                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,859                 directory, all directories are treated like packages.
2024-07-17T15:13:37,859           ********************************************************************************

2024-07-17T15:13:37,860   !!
2024-07-17T15:13:37,860     check.warn(importable)
2024-07-17T15:13:37,860   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2024-07-17T15:13:37,860   !!

2024-07-17T15:13:37,860           ********************************************************************************
2024-07-17T15:13:37,860           ############################
2024-07-17T15:13:37,861           # Package would be ignored #
2024-07-17T15:13:37,861           ############################
2024-07-17T15:13:37,861           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2024-07-17T15:13:37,861           but it is absent from setuptools' `packages` configuration.

2024-07-17T15:13:37,861           This leads to an ambiguous overall configuration. If you want to distribute this
2024-07-17T15:13:37,861           package, please make sure that 'moleculekit.wrapping' is explicitly added
2024-07-17T15:13:37,861           to the `packages` configuration field.

2024-07-17T15:13:37,862           Alternatively, you can also rely on setuptools' discovery methods
2024-07-17T15:13:37,862           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-07-17T15:13:37,862           instead of `find_packages(...)`/`find:`).

2024-07-17T15:13:37,862           You can read more about "package discovery" on setuptools documentation page:

2024-07-17T15:13:37,862           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-07-17T15:13:37,863           If you don't want 'moleculekit.wrapping' to be distributed and are
2024-07-17T15:13:37,863           already explicitly excluding 'moleculekit.wrapping' via
2024-07-17T15:13:37,863           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-07-17T15:13:37,863           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-07-17T15:13:37,863           combination with a more fine grained `package-data` configuration.

2024-07-17T15:13:37,863           You can read more about "package data files" on setuptools documentation page:

2024-07-17T15:13:37,863           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-07-17T15:13:37,864           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-07-17T15:13:37,864                 even if it does not contain any `.py` files.
2024-07-17T15:13:37,864                 On the other hand, currently there is no concept of package data
2024-07-17T15:13:37,864                 directory, all directories are treated like packages.
2024-07-17T15:13:37,864           ********************************************************************************

2024-07-17T15:13:37,864   !!
2024-07-17T15:13:37,865     check.warn(importable)
2024-07-17T15:13:37,865   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,865   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:37,865   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-17T15:13:37,865   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-17T15:13:37,865   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-17T15:13:37,865   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-17T15:13:37,866   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-17T15:13:37,879   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-17T15:13:37,882   creating build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-17T15:13:37,883   copying moleculekit/cython_utils/cython_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-17T15:13:37,910   copying moleculekit/cython_utils/cython_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-17T15:13:37,912   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-17T15:13:37,913   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-17T15:13:37,937   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-17T15:13:37,940   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-17T15:13:37,941   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-17T15:13:37,960   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-17T15:13:37,962   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-17T15:13:37,963   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-17T15:13:37,965   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-17T15:13:37,967   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2024-07-17T15:13:38,153   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-07-17T15:13:38,154   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2024-07-17T15:13:38,156   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2024-07-17T15:13:38,157   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,158   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,160   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,162   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,164   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,166   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,168   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,170   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,172   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,174   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,176   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,178   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,180   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,182   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,184   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,186   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,189   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,190   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,193   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,195   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,197   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,199   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,202   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,204   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,206   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,208   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,210   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,212   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,214   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,216   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,218   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,220   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,222   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,223   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,226   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,227   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,229   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,231   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,233   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,235   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,237   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,239   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,241   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,243   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,245   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,247   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,249   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,251   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,253   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,255   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,257   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,259   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,261   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,263   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,265   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,267   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,269   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,271   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,273   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,275   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,277   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,279   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,281   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,282   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,284   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,286   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,289   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,290   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,292   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,294   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,296   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,298   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,300   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,302   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,304   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,306   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,308   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,310   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,312   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,314   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,316   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,318   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,320   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,322   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,324   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,326   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,329   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,330   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,333   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,334   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,337   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,338   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,341   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,342   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,345   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,346   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,349   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,350   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,353   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,354   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,357   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,358   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,361   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,362   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,365   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,367   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,369   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,371   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,373   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,375   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,377   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,379   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,381   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,383   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,385   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,386   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,389   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,390   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,393   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,394   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,397   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,398   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,401   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,402   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,404   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,406   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,408   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,410   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,413   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,415   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,417   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,419   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,421   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,423   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,425   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,426   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,429   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,431   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,434   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,436   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,438   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,441   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,443   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,446   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,448   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,450   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,453   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,455   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,458   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,460   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,462   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,465   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,467   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,469   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,472   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,474   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,477   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,480   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,482   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,485   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,487   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,490   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,493   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,495   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,497   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,500   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,502   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,504   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,507   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,509   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,512   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,514   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,517   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,519   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,521   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,524   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2024-07-17T15:13:38,526   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-17T15:13:38,527   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-17T15:13:38,547   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-17T15:13:38,549   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-17T15:13:38,551   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-07-17T15:13:38,552   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2024-07-17T15:13:38,554   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-17T15:13:38,554   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-17T15:13:38,561   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-17T15:13:38,562   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-17T15:13:38,590   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-17T15:13:38,593   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-17T15:13:38,594   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-17T15:13:38,609   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-17T15:13:38,612   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-17T15:13:38,614   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-17T15:13:38,615   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-17T15:13:38,617   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-17T15:13:38,619   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2024-07-17T15:13:38,622   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-17T15:13:38,623   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-17T15:13:38,625   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-17T15:13:38,626   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-17T15:13:38,642   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-17T15:13:38,645   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-17T15:13:38,647   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-17T15:13:38,649   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-17T15:13:38,651   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-17T15:13:38,654   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-17T15:13:38,657   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-17T15:13:38,659   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2024-07-17T15:13:38,662   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-17T15:13:38,663   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-17T15:13:38,667   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-17T15:13:38,668   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-17T15:13:38,698   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-17T15:13:38,701   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-17T15:13:38,703   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-17T15:13:38,705   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-17T15:13:38,725   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-17T15:13:38,727   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-17T15:13:38,729   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-17T15:13:38,730   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-17T15:13:38,732   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-17T15:13:38,734   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-17T15:13:38,736   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-17T15:13:38,738   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-17T15:13:38,740   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2024-07-17T15:13:38,742   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-17T15:13:38,743   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-17T15:13:38,745   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-17T15:13:38,748   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-17T15:13:38,751   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-17T15:13:38,753   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-17T15:13:38,755   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-17T15:13:38,756   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-17T15:13:38,777   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-17T15:13:38,779   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-17T15:13:38,780   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-17T15:13:38,808   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-17T15:13:38,810   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-17T15:13:38,811   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-17T15:13:38,832   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-17T15:13:38,834   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-17T15:13:38,835   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-17T15:13:38,855   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-17T15:13:38,868   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-07-17T15:13:38,868   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.9.5'
2024-07-17T15:13:38,868   running build_ext
2024-07-17T15:13:38,880   building 'moleculekit.interactions.hbonds' extension
2024-07-17T15:13:38,881   creating build/temp.linux-armv7l-cpython-39
2024-07-17T15:13:38,882   creating build/temp.linux-armv7l-cpython-39/moleculekit
2024-07-17T15:13:38,883   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2024-07-17T15:13:38,884   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2024-07-17T15:13:38,885   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2024-07-17T15:13:39,164   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:13:39,164                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:13:39,165                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:13:39,165                    from moleculekit/interactions/hbonds/hbonds.cpp:1265:
2024-07-17T15:13:39,165   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:13:39,165      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:13:39,165         |  ^~~~~~~
2024-07-17T15:13:39,640   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-17T15:13:39,640                    from moleculekit/interactions/hbonds/hbonds.cpp:1269:
2024-07-17T15:13:39,640   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-17T15:13:39,641   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-17T15:13:39,641     405 |     return ((longdouble_t *) &z)[0];
2024-07-17T15:13:39,641         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-17T15:14:02,275   moleculekit/interactions/hbonds/hbonds.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_12interactions_6hbonds_1calculate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-07-17T15:14:02,275   moleculekit/interactions/hbonds/hbonds.cpp:21469:52: warning: ‘__pyx_v_d_idx_h’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:14:02,275   21469 |             (__pyx_v_results[__pyx_v_f]).push_back(__pyx_v_d_idx_h);
2024-07-17T15:14:02,276         |                                                    ^~~~~~~~~~~~~~~
2024-07-17T15:14:02,276   moleculekit/interactions/hbonds/hbonds.cpp:20486:57: note: ‘__pyx_v_d_idx_h’ was declared here
2024-07-17T15:14:02,276   20486 |   __pyx_t_11moleculekit_12interactions_6hbonds_UINT32_t __pyx_v_d_idx_h;
2024-07-17T15:14:02,276         |                                                         ^~~~~~~~~~~~~~~
2024-07-17T15:14:05,415   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:14:05,729   building 'moleculekit.interactions.pipi' extension
2024-07-17T15:14:05,730   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2024-07-17T15:14:05,731   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2024-07-17T15:14:05,963   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:14:05,963                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:14:05,963                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:14:05,963                    from moleculekit/interactions/pipi/pipi.cpp:1265:
2024-07-17T15:14:05,963   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:14:05,964      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:14:05,964         |  ^~~~~~~
2024-07-17T15:14:06,393   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-17T15:14:06,393                    from moleculekit/interactions/pipi/pipi.cpp:1269:
2024-07-17T15:14:06,394   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-17T15:14:06,394   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-17T15:14:06,394     405 |     return ((longdouble_t *) &z)[0];
2024-07-17T15:14:06,394         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-17T15:14:34,166   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:14:34,487   building 'moleculekit.interactions.cationpi' extension
2024-07-17T15:14:34,488   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2024-07-17T15:14:34,488   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2024-07-17T15:14:34,734   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:14:34,734                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:14:34,735                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:14:34,735                    from moleculekit/interactions/cationpi/cationpi.cpp:1265:
2024-07-17T15:14:34,735   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:14:34,735      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:14:34,735         |  ^~~~~~~
2024-07-17T15:14:35,189   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-17T15:14:35,189                    from moleculekit/interactions/cationpi/cationpi.cpp:1269:
2024-07-17T15:14:35,189   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-17T15:14:35,189   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-17T15:14:35,189     405 |     return ((longdouble_t *) &z)[0];
2024-07-17T15:14:35,189         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:02,854   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:15:03,175   building 'moleculekit.interactions.sigmahole' extension
2024-07-17T15:15:03,175   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2024-07-17T15:15:03,176   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2024-07-17T15:15:03,412   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:15:03,412                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:15:03,412                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:15:03,413                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1265:
2024-07-17T15:15:03,413   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:15:03,413      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:15:03,413         |  ^~~~~~~
2024-07-17T15:15:03,841   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-17T15:15:03,841                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1269:
2024-07-17T15:15:03,841   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-17T15:15:03,841   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-17T15:15:03,841     405 |     return ((longdouble_t *) &z)[0];
2024-07-17T15:15:03,841         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:30,823   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:15:31,145   building 'moleculekit.wrapping' extension
2024-07-17T15:15:31,146   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2024-07-17T15:15:31,147   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2024-07-17T15:15:31,377   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:15:31,377                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:15:31,377                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:15:31,377                    from moleculekit/wrapping/wrapping.cpp:1265:
2024-07-17T15:15:31,378   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:15:31,378      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:15:31,378         |  ^~~~~~~
2024-07-17T15:15:31,811   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-17T15:15:31,811                    from moleculekit/wrapping/wrapping.cpp:1269:
2024-07-17T15:15:31,811   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-17T15:15:31,811   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-17T15:15:31,811     405 |     return ((longdouble_t *) &z)[0];
2024-07-17T15:15:31,812         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:57,250   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:15:57,470   building 'moleculekit.bondguesser_utils' extension
2024-07-17T15:15:57,471   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2024-07-17T15:15:57,471   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2024-07-17T15:15:57,700   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:15:57,700                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:15:57,700                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:15:57,701                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1265:
2024-07-17T15:15:57,701   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:15:57,701      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:15:57,701         |  ^~~~~~~
2024-07-17T15:15:58,132   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-17T15:15:58,133                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1269:
2024-07-17T15:15:58,133   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-17T15:15:58,133   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-17T15:15:58,133     405 |     return ((longdouble_t *) &z)[0];
2024-07-17T15:15:58,133         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,238   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2024-07-17T15:15:59,238   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20255:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-17T15:15:59,238   20255 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-07-17T15:15:59,238         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-07-17T15:15:59,238   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20267:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-17T15:15:59,238   20267 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-07-17T15:15:59,239         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-07-17T15:15:59,239   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20279:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2024-07-17T15:15:59,239   20279 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2024-07-17T15:15:59,239         |                           ~~~~~~~~~~^~~~~~~~~~~
2024-07-17T15:15:59,239   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20318:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,239   20318 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-17T15:15:59,240         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,240   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20357:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,240   20357 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-17T15:15:59,240         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,240   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20396:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,240   20396 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-17T15:15:59,240         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,241   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20435:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,241   20435 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-17T15:15:59,241         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,241   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20441:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,241   20441 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-17T15:15:59,241         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,241   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20482:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,241   20482 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-17T15:15:59,242         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,242   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20488:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,242   20488 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-17T15:15:59,242         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,242   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20529:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,242   20529 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-17T15:15:59,242         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,243   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20535:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,243   20535 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-17T15:15:59,243         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,243   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20576:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,243   20576 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-17T15:15:59,243         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,243   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20629:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,244   20629 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-17T15:15:59,244         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,244   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20676:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,244   20676 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-17T15:15:59,244         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,244   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20717:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,244   20717 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-17T15:15:59,245         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,245   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20723:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,245   20723 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-17T15:15:59,245         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,245   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20729:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,245   20729 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-17T15:15:59,246         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,246   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20776:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,246   20776 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2024-07-17T15:15:59,246         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,246   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20782:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,246   20782 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-17T15:15:59,246         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,247   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20823:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,247   20823 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2024-07-17T15:15:59,247         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,247   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20835:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,247   20835 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-17T15:15:59,247         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,247   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20888:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2024-07-17T15:15:59,248   20888 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2024-07-17T15:15:59,248         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,267   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2024-07-17T15:15:59,267   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21510:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-17T15:15:59,267   21510 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2024-07-17T15:15:59,267         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2024-07-17T15:15:59,267   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21547:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-17T15:15:59,267   21547 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2024-07-17T15:15:59,268         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-07-17T15:16:22,369   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:16:22,666   building 'moleculekit.atomselect_utils' extension
2024-07-17T15:16:22,667   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2024-07-17T15:16:22,667   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2024-07-17T15:16:22,901   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:16:22,901                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:16:22,901                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:16:22,902                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1282:
2024-07-17T15:16:22,902   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:16:22,902      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:16:22,902         |  ^~~~~~~
2024-07-17T15:16:23,348   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-17T15:16:23,349                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1286:
2024-07-17T15:16:23,349   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-17T15:16:23,349   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-17T15:16:23,349     405 |     return ((longdouble_t *) &z)[0];
2024-07-17T15:16:23,349         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-17T15:16:24,604   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2024-07-17T15:16:24,604   moleculekit/atomselect_utils/atomselect_utils.cpp:23709:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-17T15:16:24,604   23709 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2024-07-17T15:16:24,605         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2024-07-17T15:16:24,609   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-07-17T15:16:24,610   moleculekit/atomselect_utils/atomselect_utils.cpp:23961:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-17T15:16:24,610   23961 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-07-17T15:16:24,610         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-17T15:16:24,615   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2024-07-17T15:16:24,615   moleculekit/atomselect_utils/atomselect_utils.cpp:24228:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-17T15:16:24,615   24228 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2024-07-17T15:16:24,615         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-17T15:16:54,757   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:16:55,079   building 'moleculekit.distance_utils' extension
2024-07-17T15:16:55,081   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2024-07-17T15:16:55,081   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2024-07-17T15:16:55,317   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:16:55,317                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:16:55,317                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:16:55,317                    from moleculekit/distance_utils/distance_utils.cpp:1265:
2024-07-17T15:16:55,317   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:16:55,318      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:16:55,318         |  ^~~~~~~
2024-07-17T15:16:55,797   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-17T15:16:55,797                    from moleculekit/distance_utils/distance_utils.cpp:1269:
2024-07-17T15:16:55,797   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-17T15:16:55,797   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-17T15:16:55,797     405 |     return ((longdouble_t *) &z)[0];
2024-07-17T15:16:55,798         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-17T15:16:56,978   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_14distance_utils_2get_collisions(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, float)’:
2024-07-17T15:16:56,979   moleculekit/distance_utils/distance_utils.cpp:21813:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-17T15:16:56,979   21813 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2024-07-17T15:16:56,979         |                       ~~~~~~~~~~^~~~~~~~~~~
2024-07-17T15:16:56,979   moleculekit/distance_utils/distance_utils.cpp:21825:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_14distance_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-17T15:16:56,979   21825 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2024-07-17T15:16:56,979         |                         ~~~~~~~~~~^~~~~~~~~~~
2024-07-17T15:17:30,162   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:17:30,493   building 'moleculekit.occupancy_utils' extension
2024-07-17T15:17:30,494   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2024-07-17T15:17:30,495   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2024-07-17T15:17:30,735   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:17:30,735                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:17:30,735                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:17:30,735                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1265:
2024-07-17T15:17:30,735   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:17:30,736      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:17:30,736         |  ^~~~~~~
2024-07-17T15:17:31,170   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-17T15:17:31,171                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1269:
2024-07-17T15:17:31,171   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-17T15:17:31,171   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-17T15:17:31,171     405 |     return ((longdouble_t *) &z)[0];
2024-07-17T15:17:31,171         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-17T15:17:53,796   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:17:54,009   building 'moleculekit.cython_utils' extension
2024-07-17T15:17:54,009   creating build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils
2024-07-17T15:17:54,010   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/cython_utils/cython_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -O3
2024-07-17T15:17:54,243   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:17:54,243                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:17:54,243                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:17:54,243                    from moleculekit/cython_utils/cython_utils.cpp:1265:
2024-07-17T15:17:54,243   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:17:54,243      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:17:54,243         |  ^~~~~~~
2024-07-17T15:17:54,670   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-17T15:17:54,671                    from moleculekit/cython_utils/cython_utils.cpp:1269:
2024-07-17T15:17:54,671   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-17T15:17:54,671   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-17T15:17:54,671     405 |     return ((longdouble_t *) &z)[0];
2024-07-17T15:17:54,671         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-17T15:18:19,627   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:18:19,937   building 'moleculekit.xtc' extension
2024-07-17T15:18:19,938   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2024-07-17T15:18:19,938   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2024-07-17T15:18:19,939   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2024-07-17T15:18:19,940   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-07-17T15:18:20,183   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,183      66 |  "OK",
2024-07-17T15:18:20,183         |  ^~~~
2024-07-17T15:18:20,184   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,184      67 |  "Header",
2024-07-17T15:18:20,184         |  ^~~~~~~~
2024-07-17T15:18:20,184   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,184      68 |  "String",
2024-07-17T15:18:20,184         |  ^~~~~~~~
2024-07-17T15:18:20,185   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,185      69 |  "Double",
2024-07-17T15:18:20,185         |  ^~~~~~~~
2024-07-17T15:18:20,185   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,185      70 |  "Integer",
2024-07-17T15:18:20,185         |  ^~~~~~~~~
2024-07-17T15:18:20,186   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,186      71 |  "Float",
2024-07-17T15:18:20,186         |  ^~~~~~~
2024-07-17T15:18:20,186   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,186      72 |  "Unsigned integer",
2024-07-17T15:18:20,186         |  ^~~~~~~~~~~~~~~~~~
2024-07-17T15:18:20,187   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,187      73 |  "Compressed 3D coordinate",
2024-07-17T15:18:20,187         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:18:20,187   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,187      74 |  "Closing file",
2024-07-17T15:18:20,187         |  ^~~~~~~~~~~~~~
2024-07-17T15:18:20,188   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,188      75 |  "Magic number",
2024-07-17T15:18:20,188         |  ^~~~~~~~~~~~~~
2024-07-17T15:18:20,188   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,188      76 |  "Not enough memory",
2024-07-17T15:18:20,188         |  ^~~~~~~~~~~~~~~~~~~
2024-07-17T15:18:20,189   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,189      77 |  "End of file",
2024-07-17T15:18:20,189         |  ^~~~~~~~~~~~~
2024-07-17T15:18:20,189   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:20,189      78 |  "File not found"
2024-07-17T15:18:20,189         |  ^~~~~~~~~~~~~~~~
2024-07-17T15:18:20,197   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-07-17T15:18:20,198   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,198     459 |     while (size >= num && num_of_bits < 32)
2024-07-17T15:18:20,198         |            ~~~~~^~~~~~
2024-07-17T15:18:20,199   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-07-17T15:18:20,199   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:20,199     505 |     while (bytes[num_of_bytes] >= num)
2024-07-17T15:18:20,199         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-17T15:18:20,202   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-07-17T15:18:20,202   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,202     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-07-17T15:18:20,202         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-07-17T15:18:20,203   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,203     616 |   for (i = 0; i < num_of_bytes; i++)
2024-07-17T15:18:20,203         |               ~~^~~~~~~~~~~~~~
2024-07-17T15:18:20,204   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,204     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-07-17T15:18:20,204         |               ~~^~~~~~~~~~~~~~~~
2024-07-17T15:18:20,205   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-07-17T15:18:20,206   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:20,206     664 |   if (lastbits < num_of_bits)
2024-07-17T15:18:20,206         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-07-17T15:18:20,210   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-07-17T15:18:20,210   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:20,210     785 |  if(size3>xfp->buf1size)
2024-07-17T15:18:20,210         |     ~~~~~^~~~~~~~~~~~~~
2024-07-17T15:18:20,212   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:20,212     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-17T15:18:20,213         |                   ^
2024-07-17T15:18:20,215   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,216     932 |     if(countmjh >= size3 ) { return -1; }
2024-07-17T15:18:20,216         |        ~~~~~~~~~^~~~~~~~
2024-07-17T15:18:20,216   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,216     935 |     if(countmjh >= size3 ) { return -1; }
2024-07-17T15:18:20,217         |        ~~~~~~~~~^~~~~~~~
2024-07-17T15:18:20,217   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,217     938 |     if(countmjh >= size3 ) { return -1; }
2024-07-17T15:18:20,217         |        ~~~~~~~~~^~~~~~~~
2024-07-17T15:18:20,218   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,218     945 |     if(countmjh >= size3 ) { return -1; }
2024-07-17T15:18:20,218         |        ~~~~~~~~~^~~~~~~~
2024-07-17T15:18:20,218   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,219     948 |     if(countmjh >= size3 ) { return -1; }
2024-07-17T15:18:20,219         |        ~~~~~~~~~^~~~~~~~
2024-07-17T15:18:20,219   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,219     951 |     if(countmjh >= size3 ) { return -1; }
2024-07-17T15:18:20,219         |        ~~~~~~~~~^~~~~~~~
2024-07-17T15:18:20,220   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-17T15:18:20,221     756 |  int smallidx,  minidx, maxidx;
2024-07-17T15:18:20,221         |                 ^~~~~~
2024-07-17T15:18:20,221   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-17T15:18:20,221     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-17T15:18:20,221         |                         ^~~~~~
2024-07-17T15:18:20,221   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-17T15:18:20,222     763 |  int errval=1;
2024-07-17T15:18:20,222         |      ^~~~~~
2024-07-17T15:18:20,224   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-07-17T15:18:20,224   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:20,225    1011 |  if(size3>xfp->buf1size)
2024-07-17T15:18:20,225         |     ~~~~~^~~~~~~~~~~~~~
2024-07-17T15:18:20,227   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,227    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-07-17T15:18:20,227         |                     ~~~~~~~~^~~~~~~
2024-07-17T15:18:20,228   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,229    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-17T15:18:20,229         |                    ~~~~~~~~^~~~~~~
2024-07-17T15:18:20,230   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,230    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-17T15:18:20,230         |                    ~~~~~~~~^~~~~~~
2024-07-17T15:18:20,232   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,232    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-07-17T15:18:20,232         |                  ^
2024-07-17T15:18:20,233   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:20,233    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-17T15:18:20,233         |                   ^
2024-07-17T15:18:20,237   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,237    1275 |  if(tmp==(unsigned int)buf2[0])
2024-07-17T15:18:20,237         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:18:20,238   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-17T15:18:20,238    1001 |  int errval;
2024-07-17T15:18:20,238         |      ^~~~~~
2024-07-17T15:18:20,241   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-07-17T15:18:20,242   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:20,242    1316 |  if(size3>xfp->buf1size)
2024-07-17T15:18:20,242         |     ~~~~~^~~~~~~~~~~~~~
2024-07-17T15:18:20,244   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:20,244    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-17T15:18:20,244         |                   ^
2024-07-17T15:18:20,247   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-17T15:18:20,248    1289 |  int smallidx,  maxidx, minidx;
2024-07-17T15:18:20,248         |                         ^~~~~~
2024-07-17T15:18:20,248   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-17T15:18:20,248    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-17T15:18:20,248         |                         ^~~~~~
2024-07-17T15:18:20,249   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-17T15:18:20,249    1297 |  int errval=1;
2024-07-17T15:18:20,249         |      ^~~~~~
2024-07-17T15:18:20,251   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-07-17T15:18:20,251   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:20,252    1513 |  if(size3>xfp->buf1size) {
2024-07-17T15:18:20,252         |     ~~~~~^~~~~~~~~~~~~~
2024-07-17T15:18:20,256   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,256    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-07-17T15:18:20,257         |                  ^
2024-07-17T15:18:20,257   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:20,257    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-17T15:18:20,258         |                   ^
2024-07-17T15:18:20,262   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:20,262    1743 |  if(tmp==(unsigned int)buf2[0])
2024-07-17T15:18:20,262         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:18:20,262   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-17T15:18:20,262    1504 |  int errval=1;
2024-07-17T15:18:20,262         |      ^~~~~~
2024-07-17T15:18:22,489   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2024-07-17T15:18:22,740   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2024-07-17T15:18:23,309   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2024-07-17T15:18:23,309   moleculekit/fileformats/xtc/src/xtc.cpp:234:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-17T15:18:23,309     234 |   for (aidx = 0; aidx < natoms; aidx++)
2024-07-17T15:18:23,309         |                  ~~~~~^~~~~~~~
2024-07-17T15:18:23,315   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2024-07-17T15:18:23,315   moleculekit/fileformats/xtc/src/xtc.cpp:436:16: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-17T15:18:23,316     436 |  for (f = 0; f < nframes; f++)
2024-07-17T15:18:23,316         |              ~~^~~~~~~~~
2024-07-17T15:18:23,316   moleculekit/fileformats/xtc/src/xtc.cpp:451:17: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-17T15:18:23,316     451 |   for (i = 0; i < natoms; i++)
2024-07-17T15:18:23,316         |               ~~^~~~~~~~
2024-07-17T15:18:23,319   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2024-07-17T15:18:23,319   moleculekit/fileformats/xtc/src/xtc.cpp:541:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-17T15:18:23,319     541 |    for (aidx = 0; aidx < natoms; aidx++)
2024-07-17T15:18:23,319         |                   ~~~~~^~~~~~~~
2024-07-17T15:18:23,321   moleculekit/fileformats/xtc/src/xtc.cpp:610:24: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2024-07-17T15:18:23,321     610 |    for (aidx = 0; aidx < natoms; aidx++)
2024-07-17T15:18:23,322         |                   ~~~~~^~~~~~~~
2024-07-17T15:18:24,097   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2024-07-17T15:18:24,339   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:18:24,339                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:18:24,339                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:18:24,339                    from moleculekit/fileformats/xtc/xtc.cpp:1269:
2024-07-17T15:18:24,339   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:18:24,340      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:18:24,340         |  ^~~~~~~
2024-07-17T15:18:24,781   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ufuncobject.h:4,
2024-07-17T15:18:24,781                    from moleculekit/fileformats/xtc/xtc.cpp:1273:
2024-07-17T15:18:24,781   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h: In function ‘npy_longdouble npy_creall(npy_clongdouble)’:
2024-07-17T15:18:24,782   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_math.h:405:13: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
2024-07-17T15:18:24,782     405 |     return ((longdouble_t *) &z)[0];
2024-07-17T15:18:24,782         |            ~^~~~~~~~~~~~~~~~~~~~
2024-07-17T15:18:44,485   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:18:44,808   building 'moleculekit.trr' extension
2024-07-17T15:18:44,809   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2024-07-17T15:18:44,928   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2024-07-17T15:18:45,162   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,162      66 |  "OK",
2024-07-17T15:18:45,162         |  ^~~~
2024-07-17T15:18:45,163   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,163      67 |  "Header",
2024-07-17T15:18:45,163         |  ^~~~~~~~
2024-07-17T15:18:45,163   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,163      68 |  "String",
2024-07-17T15:18:45,163         |  ^~~~~~~~
2024-07-17T15:18:45,163   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,164      69 |  "Double",
2024-07-17T15:18:45,164         |  ^~~~~~~~
2024-07-17T15:18:45,164   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,164      70 |  "Integer",
2024-07-17T15:18:45,164         |  ^~~~~~~~~
2024-07-17T15:18:45,164   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,164      71 |  "Float",
2024-07-17T15:18:45,165         |  ^~~~~~~
2024-07-17T15:18:45,165   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,165      72 |  "Unsigned integer",
2024-07-17T15:18:45,165         |  ^~~~~~~~~~~~~~~~~~
2024-07-17T15:18:45,165   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,165      73 |  "Compressed 3D coordinate",
2024-07-17T15:18:45,165         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:18:45,165   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,166      74 |  "Closing file",
2024-07-17T15:18:45,166         |  ^~~~~~~~~~~~~~
2024-07-17T15:18:45,166   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,166      75 |  "Magic number",
2024-07-17T15:18:45,166         |  ^~~~~~~~~~~~~~
2024-07-17T15:18:45,166   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,167      76 |  "Not enough memory",
2024-07-17T15:18:45,167         |  ^~~~~~~~~~~~~~~~~~~
2024-07-17T15:18:45,167   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,167      77 |  "End of file",
2024-07-17T15:18:45,167         |  ^~~~~~~~~~~~~
2024-07-17T15:18:45,167   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2024-07-17T15:18:45,167      78 |  "File not found"
2024-07-17T15:18:45,168         |  ^~~~~~~~~~~~~~~~
2024-07-17T15:18:45,171   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2024-07-17T15:18:45,172   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,172     459 |     while (size >= num && num_of_bits < 32)
2024-07-17T15:18:45,172         |            ~~~~~^~~~~~
2024-07-17T15:18:45,172   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2024-07-17T15:18:45,172   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:45,173     505 |     while (bytes[num_of_bytes] >= num)
2024-07-17T15:18:45,173         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-17T15:18:45,175   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2024-07-17T15:18:45,175   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,175     614 |     if (num_of_bits >= num_of_bytes * 8)
2024-07-17T15:18:45,175         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2024-07-17T15:18:45,175   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,175     616 |   for (i = 0; i < num_of_bytes; i++)
2024-07-17T15:18:45,176         |               ~~^~~~~~~~~~~~~~
2024-07-17T15:18:45,176   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,176     624 |   for (i = 0; i < num_of_bytes-1; i++)
2024-07-17T15:18:45,176         |               ~~^~~~~~~~~~~~~~~~
2024-07-17T15:18:45,176   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2024-07-17T15:18:45,176   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:45,177     664 |   if (lastbits < num_of_bits)
2024-07-17T15:18:45,177         |       ~~~~~~~~~^~~~~~~~~~~~~
2024-07-17T15:18:45,180   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2024-07-17T15:18:45,180   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:45,180     785 |  if(size3>xfp->buf1size)
2024-07-17T15:18:45,180         |     ~~~~~^~~~~~~~~~~~~~
2024-07-17T15:18:45,182   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:45,182     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-17T15:18:45,182         |                   ^
2024-07-17T15:18:45,185   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,185     932 |     if(countmjh >= size3 ) { return -1; }
2024-07-17T15:18:45,185         |        ~~~~~~~~~^~~~~~~~
2024-07-17T15:18:45,185   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,185     935 |     if(countmjh >= size3 ) { return -1; }
2024-07-17T15:18:45,185         |        ~~~~~~~~~^~~~~~~~
2024-07-17T15:18:45,186   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,186     938 |     if(countmjh >= size3 ) { return -1; }
2024-07-17T15:18:45,186         |        ~~~~~~~~~^~~~~~~~
2024-07-17T15:18:45,186   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,186     945 |     if(countmjh >= size3 ) { return -1; }
2024-07-17T15:18:45,186         |        ~~~~~~~~~^~~~~~~~
2024-07-17T15:18:45,186   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,187     948 |     if(countmjh >= size3 ) { return -1; }
2024-07-17T15:18:45,187         |        ~~~~~~~~~^~~~~~~~
2024-07-17T15:18:45,187   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,187     951 |     if(countmjh >= size3 ) { return -1; }
2024-07-17T15:18:45,187         |        ~~~~~~~~~^~~~~~~~
2024-07-17T15:18:45,187   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-17T15:18:45,187     756 |  int smallidx,  minidx, maxidx;
2024-07-17T15:18:45,187         |                 ^~~~~~
2024-07-17T15:18:45,188   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-17T15:18:45,188     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-17T15:18:45,188         |                         ^~~~~~
2024-07-17T15:18:45,188   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-17T15:18:45,188     763 |  int errval=1;
2024-07-17T15:18:45,188         |      ^~~~~~
2024-07-17T15:18:45,189   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2024-07-17T15:18:45,189   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:45,189    1011 |  if(size3>xfp->buf1size)
2024-07-17T15:18:45,189         |     ~~~~~^~~~~~~~~~~~~~
2024-07-17T15:18:45,191   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,191    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2024-07-17T15:18:45,191         |                     ~~~~~~~~^~~~~~~
2024-07-17T15:18:45,192   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,192    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-17T15:18:45,192         |                    ~~~~~~~~^~~~~~~
2024-07-17T15:18:45,192   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,193    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2024-07-17T15:18:45,193         |                    ~~~~~~~~^~~~~~~
2024-07-17T15:18:45,194   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,194    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-07-17T15:18:45,194         |                  ^
2024-07-17T15:18:45,194   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:45,195    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-17T15:18:45,195         |                   ^
2024-07-17T15:18:45,198   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,198    1275 |  if(tmp==(unsigned int)buf2[0])
2024-07-17T15:18:45,199         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:18:45,199   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-17T15:18:45,199    1001 |  int errval;
2024-07-17T15:18:45,199         |      ^~~~~~
2024-07-17T15:18:45,201   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2024-07-17T15:18:45,202   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:45,202    1316 |  if(size3>xfp->buf1size)
2024-07-17T15:18:45,202         |     ~~~~~^~~~~~~~~~~~~~
2024-07-17T15:18:45,203   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:45,204    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-17T15:18:45,204         |                   ^
2024-07-17T15:18:45,206   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-07-17T15:18:45,207    1289 |  int smallidx,  maxidx, minidx;
2024-07-17T15:18:45,207         |                         ^~~~~~
2024-07-17T15:18:45,207   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-07-17T15:18:45,207    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-07-17T15:18:45,207         |                         ^~~~~~
2024-07-17T15:18:45,207   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2024-07-17T15:18:45,207    1297 |  int errval=1;
2024-07-17T15:18:45,207         |      ^~~~~~
2024-07-17T15:18:45,208   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2024-07-17T15:18:45,209   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:45,209    1513 |  if(size3>xfp->buf1size) {
2024-07-17T15:18:45,209         |     ~~~~~^~~~~~~~~~~~~~
2024-07-17T15:18:45,213   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,213    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-07-17T15:18:45,213         |                  ^
2024-07-17T15:18:45,213   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:18:45,214    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-07-17T15:18:45,214         |                   ^
2024-07-17T15:18:45,217   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:18:45,217    1743 |  if(tmp==(unsigned int)buf2[0])
2024-07-17T15:18:45,218         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:18:45,218   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-07-17T15:18:45,218    1504 |  int errval=1;
2024-07-17T15:18:45,218         |      ^~~~~~
2024-07-17T15:18:47,450   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2024-07-17T15:18:47,548   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-07-17T15:18:47,548   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-07-17T15:18:47,548     111 |         if (slen != strlen(version)+1)
2024-07-17T15:18:47,548         |                  ^~
2024-07-17T15:18:47,548   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-07-17T15:18:47,549     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2024-07-17T15:18:47,549         |                                              ^~
2024-07-17T15:18:48,116   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2024-07-17T15:18:48,441   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:18:48,441                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:18:48,441                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:18:48,441                    from moleculekit/fileformats/xtc/trr.c:1261:
2024-07-17T15:18:48,441   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:18:48,441      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:18:48,441         |  ^~~~~~~
2024-07-17T15:18:49,048   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2024-07-17T15:18:49,057   moleculekit/fileformats/xtc/trr.c:16804:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2024-07-17T15:18:49,057   16804 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2024-07-17T15:18:49,057         |                                     ^~
2024-07-17T15:19:09,386   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2024-07-17T15:19:09,386   moleculekit/fileformats/xtc/trr.c:1163:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:09,386    1163 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-17T15:19:09,386         |                                        ^~~~~~~~~~~~~~~
2024-07-17T15:19:09,395   moleculekit/fileformats/xtc/trr.c:14714:7: note: ‘__pyx_v_status’ was declared here
2024-07-17T15:19:09,396   14714 |   int __pyx_v_status;
2024-07-17T15:19:09,396         |       ^~~~~~~~~~~~~~
2024-07-17T15:19:19,759   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2024-07-17T15:19:19,766   moleculekit/fileformats/xtc/trr.c:12013:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,767   12013 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2024-07-17T15:19:19,767         |                   ^
2024-07-17T15:19:19,774   moleculekit/fileformats/xtc/trr.c:12009:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,774   12009 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-17T15:19:19,775         |                   ^
2024-07-17T15:19:19,776   moleculekit/fileformats/xtc/trr.c:2485:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,776    2485 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-07-17T15:19:19,776         |                                                                                               ^
2024-07-17T15:19:19,782   moleculekit/fileformats/xtc/trr.c:10545:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2024-07-17T15:19:19,783   10545 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2024-07-17T15:19:19,783         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2024-07-17T15:19:19,789   moleculekit/fileformats/xtc/trr.c:12003:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,790   12003 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2024-07-17T15:19:19,790         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-17T15:19:19,797   moleculekit/fileformats/xtc/trr.c:11956:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,797   11956 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2024-07-17T15:19:19,797         |                   ^
2024-07-17T15:19:19,805   moleculekit/fileformats/xtc/trr.c:11952:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,805   11952 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-17T15:19:19,805         |                   ^
2024-07-17T15:19:19,807   moleculekit/fileformats/xtc/trr.c:2485:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,807    2485 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2024-07-17T15:19:19,807         |                                                                                               ^
2024-07-17T15:19:19,813   moleculekit/fileformats/xtc/trr.c:10561:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2024-07-17T15:19:19,813   10561 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2024-07-17T15:19:19,813         |                     ^~~~~~~~~~~~~~~~~~~~
2024-07-17T15:19:19,820   moleculekit/fileformats/xtc/trr.c:11946:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,820   11946 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2024-07-17T15:19:19,820         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2024-07-17T15:19:19,827   moleculekit/fileformats/xtc/trr.c:12345:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,827   12345 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-17T15:19:19,827         |                 ^
2024-07-17T15:19:19,835   moleculekit/fileformats/xtc/trr.c:12341:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,835   12341 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-17T15:19:19,835         |                 ^
2024-07-17T15:19:19,842   moleculekit/fileformats/xtc/trr.c:12186:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,842   12186 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-17T15:19:19,842         |                   ^
2024-07-17T15:19:19,849   moleculekit/fileformats/xtc/trr.c:12182:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,850   12182 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-17T15:19:19,850         |                   ^
2024-07-17T15:19:19,855   moleculekit/fileformats/xtc/trr.c:12238:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,856   12238 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2024-07-17T15:19:19,856         |                   ^
2024-07-17T15:19:19,863   moleculekit/fileformats/xtc/trr.c:12234:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:19,863   12234 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2024-07-17T15:19:19,864         |                   ^
2024-07-17T15:19:26,326   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:19:26,513   building 'moleculekit.dcd' extension
2024-07-17T15:19:26,514   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2024-07-17T15:19:26,515   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2024-07-17T15:19:26,517   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2024-07-17T15:19:26,860   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:19:26,861                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:19:26,861                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:19:26,861                    from moleculekit/fileformats/dcd/dcd.c:1256:
2024-07-17T15:19:26,861   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:19:26,861      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:19:26,861         |  ^~~~~~~
2024-07-17T15:19:27,881   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2024-07-17T15:19:27,881                    from moleculekit/fileformats/dcd/dcd.c:1262:
2024-07-17T15:19:27,882   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-07-17T15:19:27,882     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-07-17T15:19:27,882         |            ^~~~~~~~~~~~~
2024-07-17T15:19:27,882   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-07-17T15:19:27,882     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-07-17T15:19:27,883         |            ^~~~~~~~~~~~~~
2024-07-17T15:19:27,883   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2024-07-17T15:19:27,883     466 | static int fio_write_int32(fio_fd fd, int i) {
2024-07-17T15:19:27,883         |            ^~~~~~~~~~~~~~~
2024-07-17T15:19:27,883   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2024-07-17T15:19:27,883     457 | static fio_size_t fio_ftell(fio_fd fd) {
2024-07-17T15:19:27,883         |                   ^~~~~~~~~
2024-07-17T15:19:27,883   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2024-07-17T15:19:27,884     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2024-07-17T15:19:27,884         |                   ^~~~~~~~~
2024-07-17T15:19:27,884   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2024-07-17T15:19:27,884     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2024-07-17T15:19:27,884         |                   ^~~~~~~~~
2024-07-17T15:19:27,884   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2024-07-17T15:19:27,884     394 | static int fio_fclose(fio_fd fd) {
2024-07-17T15:19:27,884         |            ^~~~~~~~~~
2024-07-17T15:19:27,885   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2024-07-17T15:19:27,885     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2024-07-17T15:19:27,885         |            ^~~~~~~~
2024-07-17T15:19:40,515   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2024-07-17T15:19:40,516   moleculekit/fileformats/dcd/dcd.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:40,516    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-17T15:19:40,516         |                                        ^~~~~~~~~~~~~~~
2024-07-17T15:19:40,520   moleculekit/fileformats/dcd/dcd.c:8476:7: note: ‘__pyx_v_i’ was declared here
2024-07-17T15:19:40,521    8476 |   int __pyx_v_i;
2024-07-17T15:19:40,521         |       ^~~~~~~~~
2024-07-17T15:19:43,766   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2024-07-17T15:19:43,955   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2024-07-17T15:19:43,956   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:19:43,956     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-07-17T15:19:43,956         |                                                       ^~
2024-07-17T15:19:43,956   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:19:43,957     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2024-07-17T15:19:43,957         |                                                      ^~
2024-07-17T15:19:43,957   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:19:43,957     194 |     if (input_integer[0] != dcdcordmagic)
2024-07-17T15:19:43,957         |                          ^~
2024-07-17T15:19:43,960   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:19:43,960     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-07-17T15:19:43,960         |                                               ^~
2024-07-17T15:19:43,961   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-07-17T15:19:43,961     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2024-07-17T15:19:43,961         |                                               ^~
2024-07-17T15:19:43,964   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2024-07-17T15:19:43,965   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:19:43,965     651 |         if (tmpbuf[i] != sizeof(float) * N)
2024-07-17T15:19:43,965         |                       ^~
2024-07-17T15:19:43,965   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-07-17T15:19:43,965     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2024-07-17T15:19:43,965         |                                                 ^~
2024-07-17T15:19:43,988   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2024-07-17T15:19:43,988   At top level:
2024-07-17T15:19:43,988   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-07-17T15:19:43,988      96 | static void swap2_aligned(void *v, long ndata) {
2024-07-17T15:19:43,989         |             ^~~~~~~~~~~~~
2024-07-17T15:19:43,989   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-07-17T15:19:43,989      32 | static void swap2_unaligned(void *v, long ndata) {
2024-07-17T15:19:43,989         |             ^~~~~~~~~~~~~~~
2024-07-17T15:19:43,989   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2024-07-17T15:19:43,989   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-07-17T15:19:43,989     474 | static int fio_write_str(fio_fd fd, const char *str) {
2024-07-17T15:19:43,990         |            ^~~~~~~~~~~~~
2024-07-17T15:19:43,990   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-07-17T15:19:43,990     470 | static int fio_read_int32(fio_fd fd, int *i) {
2024-07-17T15:19:43,990         |            ^~~~~~~~~~~~~~
2024-07-17T15:19:45,093   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:19:45,246   building 'moleculekit.binpos' extension
2024-07-17T15:19:45,247   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2024-07-17T15:19:45,248   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2024-07-17T15:19:45,249   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2024-07-17T15:19:45,596   In file included from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
2024-07-17T15:19:45,596                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
2024-07-17T15:19:45,597                    from /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
2024-07-17T15:19:45,597                    from moleculekit/fileformats/binpos/binpos.c:1256:
2024-07-17T15:19:45,597   /tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-07-17T15:19:45,597      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-07-17T15:19:45,597         |  ^~~~~~~
2024-07-17T15:19:59,041   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2024-07-17T15:19:59,046   moleculekit/fileformats/binpos/binpos.c:8499:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:59,046    8499 |   if (__pyx_t_1) {
2024-07-17T15:19:59,046         |      ^
2024-07-17T15:19:59,050   moleculekit/fileformats/binpos/binpos.c:7976:7: note: ‘__pyx_v_status’ was declared here
2024-07-17T15:19:59,050    7976 |   int __pyx_v_status;
2024-07-17T15:19:59,051         |       ^~~~~~~~~~~~~~
2024-07-17T15:19:59,051   moleculekit/fileformats/binpos/binpos.c:1158:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-07-17T15:19:59,051    1158 |   #define PyInt_FromLong               PyLong_FromLong
2024-07-17T15:19:59,051         |                                        ^~~~~~~~~~~~~~~
2024-07-17T15:19:59,055   moleculekit/fileformats/binpos/binpos.c:7973:7: note: ‘__pyx_v_i’ was declared here
2024-07-17T15:19:59,056    7973 |   int __pyx_v_i;
2024-07-17T15:19:59,056         |       ^~~~~~~~~
2024-07-17T15:20:01,282   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2024-07-17T15:20:01,579   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:20:01,721   building 'moleculekit.tmalign' extension
2024-07-17T15:20:01,722   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2024-07-17T15:20:01,723   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2024-07-17T15:20:01,725   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2024-07-17T15:20:31,223   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-3v9rbj21/overlay/lib/python3.9/site-packages/numpy/_core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2024-07-17T15:20:49,724   In file included from /usr/include/c++/10/vector:72,
2024-07-17T15:20:49,724                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-07-17T15:20:49,724   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-07-17T15:20:49,724   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-07-17T15:20:49,724     426 |       vector<_Tp, _Alloc>::
2024-07-17T15:20:49,725         |       ^~~~~~~~~~~~~~~~~~~
2024-07-17T15:20:50,307   In file included from /usr/include/c++/10/vector:67,
2024-07-17T15:20:50,307                    from moleculekit/tmalign/tmalign_util.cpp:1280:
2024-07-17T15:20:50,307   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2024-07-17T15:20:50,308   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-17T15:20:50,308    1198 |    _M_realloc_insert(end(), __x);
2024-07-17T15:20:50,308         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-17T15:20:50,308   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-17T15:20:50,308    1198 |    _M_realloc_insert(end(), __x);
2024-07-17T15:20:50,308         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-17T15:20:50,309   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-07-17T15:20:50,309    1198 |    _M_realloc_insert(end(), __x);
2024-07-17T15:20:50,309         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-07-17T15:20:52,770   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2024-07-17T15:20:53,243   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2024-07-17T15:20:53,243   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.9.5'
2024-07-17T15:20:53,244   installing to build/bdist.linux-armv7l/wheel
2024-07-17T15:20:53,244   running install
2024-07-17T15:20:53,270   running install_lib
2024-07-17T15:20:53,277   creating build/bdist.linux-armv7l
2024-07-17T15:20:53,278   creating build/bdist.linux-armv7l/wheel
2024-07-17T15:20:53,281   creating build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,288   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,291   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-17T15:20:53,292   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-17T15:20:53,294   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-07-17T15:20:53,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2024-07-17T15:20:53,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-17T15:20:53,302   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-17T15:20:53,303   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-17T15:20:53,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-17T15:20:53,309   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2024-07-17T15:20:53,311   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-17T15:20:53,313   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2024-07-17T15:20:53,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-17T15:20:53,330   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-17T15:20:53,332   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-17T15:20:53,333   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-17T15:20:53,336   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-07-17T15:20:53,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2024-07-17T15:20:53,340   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-17T15:20:53,362   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-17T15:20:53,363   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-17T15:20:53,366   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-17T15:20:53,369   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-17T15:20:53,371   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-17T15:20:53,374   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2024-07-17T15:20:53,376   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2024-07-17T15:20:53,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2024-07-17T15:20:53,382   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-17T15:20:53,383   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-17T15:20:53,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-17T15:20:53,413   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-17T15:20:53,442   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-17T15:20:53,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-17T15:20:53,447   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-17T15:20:53,449   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-17T15:20:53,450   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-17T15:20:53,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-17T15:20:53,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-17T15:20:53,458   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-17T15:20:53,460   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2024-07-17T15:20:53,463   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-17T15:20:53,464   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-17T15:20:53,466   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-17T15:20:53,468   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-17T15:20:53,470   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-17T15:20:53,471   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-17T15:20:53,474   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2024-07-17T15:20:53,476   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2024-07-17T15:20:53,479   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-17T15:20:53,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-17T15:20:53,482   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2024-07-17T15:20:53,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,559   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,583   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,600   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,604   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-17T15:20:53,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-17T15:20:53,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2024-07-17T15:20:53,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,637   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,639   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,646   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,650   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,655   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,657   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,659   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,661   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,666   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,670   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2024-07-17T15:20:53,673   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-17T15:20:53,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-17T15:20:53,677   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2024-07-17T15:20:53,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:53,718   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-17T15:20:53,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-17T15:20:53,721   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmolcdp.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-17T15:20:53,723   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-17T15:20:53,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-17T15:20:53,729   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-17T15:20:53,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-17T15:20:53,733   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2024-07-17T15:20:53,736   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-17T15:20:53,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-17T15:20:53,739   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-17T15:20:53,740   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-17T15:20:53,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2024-07-17T15:20:53,745   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-07-17T15:20:53,747   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-17T15:20:53,748   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-17T15:20:53,750   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-17T15:20:53,752   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-17T15:20:53,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/BinaryCifReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-17T15:20:53,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2024-07-17T15:20:53,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2024-07-17T15:20:53,761   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-17T15:20:53,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-17T15:20:53,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2024-07-17T15:20:53,766   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-17T15:20:53,767   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-17T15:20:53,769   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-17T15:20:53,771   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-17T15:20:53,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2024-07-17T15:20:53,775   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-17T15:20:53,776   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2024-07-17T15:20:53,780   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,781   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,783   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,785   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,786   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,788   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,790   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,794   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,796   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,798   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,799   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,801   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,803   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,805   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,813   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,815   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,818   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,820   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,822   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,824   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,826   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,828   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,830   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,831   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,833   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,835   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,836   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,838   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,843   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,851   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,853   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,857   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,858   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,860   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,862   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,867   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,874   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,877   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,879   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,884   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,892   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,896   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,899   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,902   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,904   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,911   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,913   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,917   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,924   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,929   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,932   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,939   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,951   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,953   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,954   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,958   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,959   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,961   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,966   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,972   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,980   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,989   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,991   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,993   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,996   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:53,999   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,001   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,003   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,004   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,008   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,010   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,011   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,013   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,015   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,017   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,020   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,030   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,047   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,049   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,051   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,055   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,057   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,059   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,061   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,065   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,067   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,081   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,083   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,085   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,087   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,089   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,091   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2024-07-17T15:20:54,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-17T15:20:54,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-17T15:20:54,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2024-07-17T15:20:54,311   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-07-17T15:20:54,312   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2024-07-17T15:20:54,314   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,316   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,318   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,321   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-17T15:20:54,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-17T15:20:54,324   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-17T15:20:54,326   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2024-07-17T15:20:54,345   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-07-17T15:20:54,346   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2024-07-17T15:20:54,351   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-07-17T15:20:54,352   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2024-07-17T15:20:54,354   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,356   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,361   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,363   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,365   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,424   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,429   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-17T15:20:54,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-17T15:20:54,432   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-17T15:20:54,437   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2024-07-17T15:20:54,439   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,469   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-17T15:20:54,470   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-17T15:20:54,472   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2024-07-17T15:20:54,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,495   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-17T15:20:54,497   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-17T15:20:54,497   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-17T15:20:54,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2024-07-17T15:20:54,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-17T15:20:54,544   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-17T15:20:54,544   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-17T15:20:54,564   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2024-07-17T15:20:54,567   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-17T15:20:54,568   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-17T15:20:54,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2024-07-17T15:20:54,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-17T15:20:54,593   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-17T15:20:54,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-17T15:20:54,620   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-17T15:20:54,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2024-07-17T15:20:54,667   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-17T15:20:54,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-17T15:20:54,670   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2024-07-17T15:20:54,694   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,715   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,746   creating build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-17T15:20:54,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-17T15:20:54,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/cython_utils/cython_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/cython_utils
2024-07-17T15:20:54,767   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,789   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-17T15:20:54,790   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-17T15:20:54,810   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2024-07-17T15:20:54,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,836   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,838   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-17T15:20:54,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-17T15:20:54,842   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-17T15:20:54,844   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-17T15:20:54,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2024-07-17T15:20:54,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2024-07-17T15:20:54,869   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,873   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,877   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,892   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-17T15:20:54,893   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-17T15:20:54,895   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2024-07-17T15:20:54,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,909   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2024-07-17T15:20:54,910   running install_egg_info
2024-07-17T15:20:54,916   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.9.5-py3.9.egg-info
2024-07-17T15:20:54,929   running install_scripts
2024-07-17T15:20:54,975   creating build/bdist.linux-armv7l/wheel/moleculekit-1.9.5.dist-info/WHEEL
2024-07-17T15:20:54,979   creating '/tmp/pip-wheel-4g2f3n9t/.tmp-d6k8at3d/moleculekit-1.9.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-07-17T15:20:54,984   adding 'moleculekit/__init__.py'
2024-07-17T15:20:54,985   adding 'moleculekit/_version.py'
2024-07-17T15:20:54,987   adding 'moleculekit/align.py'
2024-07-17T15:20:55,300   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:55,463   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:55,470   adding 'moleculekit/bondguesser.py'
2024-07-17T15:20:55,715   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:55,725   adding 'moleculekit/config.py'
2024-07-17T15:20:55,985   adding 'moleculekit/cython_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:56,157   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:56,164   adding 'moleculekit/dihedral.py'
2024-07-17T15:20:56,166   adding 'moleculekit/distance.py'
2024-07-17T15:20:56,496   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:56,508   adding 'moleculekit/home.py'
2024-07-17T15:20:56,510   adding 'moleculekit/logging.ini'
2024-07-17T15:20:56,525   adding 'moleculekit/molecule.py'
2024-07-17T15:20:56,753   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:56,762   adding 'moleculekit/opm.py'
2024-07-17T15:20:56,765   adding 'moleculekit/periodictable.py'
2024-07-17T15:20:56,766   adding 'moleculekit/pymolgraphics.py'
2024-07-17T15:20:56,768   adding 'moleculekit/rcsb.py'
2024-07-17T15:20:56,769   adding 'moleculekit/rdkitintegration.py'
2024-07-17T15:20:56,784   adding 'moleculekit/readers.py'
2024-07-17T15:20:57,392   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:57,705   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:57,718   adding 'moleculekit/util.py'
2024-07-17T15:20:57,720   adding 'moleculekit/version.py'
2024-07-17T15:20:57,721   adding 'moleculekit/viewer.py'
2024-07-17T15:20:57,723   adding 'moleculekit/vmd_wrapper'
2024-07-17T15:20:57,725   adding 'moleculekit/vmdgraphics.py'
2024-07-17T15:20:57,728   adding 'moleculekit/vmdviewer.py'
2024-07-17T15:20:57,982   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:57,997   adding 'moleculekit/writers.py'
2024-07-17T15:20:58,266   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:58,277   adding 'moleculekit/atomselect/__init__.py'
2024-07-17T15:20:58,278   adding 'moleculekit/atomselect/analyze.py'
2024-07-17T15:20:58,281   adding 'moleculekit/atomselect/atomselect.py'
2024-07-17T15:20:58,283   adding 'moleculekit/atomselect/languageparser.py'
2024-07-17T15:20:58,389   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2024-07-17T15:20:58,400   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2024-07-17T15:20:58,494   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2024-07-17T15:20:58,503   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2024-07-17T15:20:58,595   adding 'moleculekit/cython_utils/cython_utils.cpp'
2024-07-17T15:20:58,604   adding 'moleculekit/cython_utils/cython_utils.pyx'
2024-07-17T15:20:58,708   adding 'moleculekit/distance_utils/distance_utils.cpp'
2024-07-17T15:20:58,719   adding 'moleculekit/distance_utils/distance_utils.pyx'
2024-07-17T15:20:58,721   adding 'moleculekit/fileformats/__init__.py'
2024-07-17T15:20:58,727   adding 'moleculekit/fileformats/netcdf.py'
2024-07-17T15:20:58,729   adding 'moleculekit/fileformats/utils.py'
2024-07-17T15:20:58,792   adding 'moleculekit/fileformats/binpos/binpos.c'
2024-07-17T15:20:58,800   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2024-07-17T15:20:58,801   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2024-07-17T15:20:58,803   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2024-07-17T15:20:58,805   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2024-07-17T15:20:58,810   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2024-07-17T15:20:58,817   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2024-07-17T15:20:58,882   adding 'moleculekit/fileformats/dcd/dcd.c'
2024-07-17T15:20:58,890   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2024-07-17T15:20:58,892   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2024-07-17T15:20:58,894   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2024-07-17T15:20:58,896   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2024-07-17T15:20:58,898   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2024-07-17T15:20:58,900   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2024-07-17T15:20:58,905   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2024-07-17T15:20:58,911   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2024-07-17T15:20:59,008   adding 'moleculekit/fileformats/xtc/trr.c'
2024-07-17T15:20:59,020   adding 'moleculekit/fileformats/xtc/trr.pyx'
2024-07-17T15:20:59,022   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2024-07-17T15:20:59,023   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2024-07-17T15:20:59,114   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2024-07-17T15:20:59,123   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2024-07-17T15:20:59,125   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2024-07-17T15:20:59,127   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2024-07-17T15:20:59,129   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2024-07-17T15:20:59,131   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2024-07-17T15:20:59,133   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2024-07-17T15:20:59,135   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2024-07-17T15:20:59,136   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2024-07-17T15:20:59,138   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2024-07-17T15:20:59,145   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2024-07-17T15:20:59,148   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2024-07-17T15:20:59,150   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2024-07-17T15:20:59,152   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2024-07-17T15:20:59,154   adding 'moleculekit/interactions/__init__.py'
2024-07-17T15:20:59,439   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:59,710   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:20:59,722   adding 'moleculekit/interactions/interactions.py'
2024-07-17T15:21:00,007   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:21:00,298   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2024-07-17T15:21:00,402   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2024-07-17T15:21:00,411   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2024-07-17T15:21:00,505   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2024-07-17T15:21:00,514   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2024-07-17T15:21:00,608   adding 'moleculekit/interactions/pipi/pipi.cpp'
2024-07-17T15:21:00,618   adding 'moleculekit/interactions/pipi/pipi.pyx'
2024-07-17T15:21:00,712   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2024-07-17T15:21:00,721   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2024-07-17T15:21:00,810   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2024-07-17T15:21:00,819   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2024-07-17T15:21:00,821   adding 'moleculekit/pdbx/__init__.py'
2024-07-17T15:21:00,824   adding 'moleculekit/pdbx/reader/BinaryCifReader.py'
2024-07-17T15:21:00,827   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2024-07-17T15:21:00,831   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2024-07-17T15:21:00,834   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2024-07-17T15:21:00,835   adding 'moleculekit/pdbx/reader/__init__.py'
2024-07-17T15:21:00,838   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2024-07-17T15:21:00,840   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2024-07-17T15:21:00,841   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2024-07-17T15:21:00,843   adding 'moleculekit/pdbx/tests/__init__.py'
2024-07-17T15:21:00,845   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2024-07-17T15:21:00,847   adding 'moleculekit/pdbx/writer/__init__.py'
2024-07-17T15:21:00,849   adding 'moleculekit/ply/__init__.py'
2024-07-17T15:21:00,853   adding 'moleculekit/ply/lex.py'
2024-07-17T15:21:00,865   adding 'moleculekit/ply/yacc.py'
2024-07-17T15:21:00,868   adding 'moleculekit/projections/__init__.py'
2024-07-17T15:21:00,870   adding 'moleculekit/projections/metriccoordinate.py'
2024-07-17T15:21:00,874   adding 'moleculekit/projections/metricdihedral.py'
2024-07-17T15:21:00,878   adding 'moleculekit/projections/metricdistance.py'
2024-07-17T15:21:00,881   adding 'moleculekit/projections/metricfluctuation.py'
2024-07-17T15:21:00,883   adding 'moleculekit/projections/metricgyration.py'
2024-07-17T15:21:00,887   adding 'moleculekit/projections/metricplumed2.py'
2024-07-17T15:21:00,889   adding 'moleculekit/projections/metricrmsd.py'
2024-07-17T15:21:00,891   adding 'moleculekit/projections/metricsasa.py'
2024-07-17T15:21:00,894   adding 'moleculekit/projections/metricsecondarystructure.py'
2024-07-17T15:21:00,896   adding 'moleculekit/projections/metricshell.py'
2024-07-17T15:21:00,898   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2024-07-17T15:21:00,900   adding 'moleculekit/projections/metrictmscore.py'
2024-07-17T15:21:00,901   adding 'moleculekit/projections/projection.py'
2024-07-17T15:21:00,903   adding 'moleculekit/projections/util.py'
2024-07-17T15:21:00,905   adding 'moleculekit/share/ALA.cif'
2024-07-17T15:21:00,907   adding 'moleculekit/share/backbone.cif'
2024-07-17T15:21:02,215   adding 'moleculekit/share/opm_sequences.json'
2024-07-17T15:21:02,301   adding 'moleculekit/share/atomselect/atomselect.json'
2024-07-17T15:21:02,306   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2024-07-17T15:21:02,307   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2024-07-17T15:21:02,309   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2024-07-17T15:21:02,310   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2024-07-17T15:21:02,312   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2024-07-17T15:21:02,313   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2024-07-17T15:21:02,315   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2024-07-17T15:21:02,316   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2024-07-17T15:21:02,318   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2024-07-17T15:21:02,319   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2024-07-17T15:21:02,321   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2024-07-17T15:21:02,322   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2024-07-17T15:21:02,324   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2024-07-17T15:21:02,325   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2024-07-17T15:21:02,327   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2024-07-17T15:21:02,328   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2024-07-17T15:21:02,330   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2024-07-17T15:21:02,331   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2024-07-17T15:21:02,333   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2024-07-17T15:21:02,334   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2024-07-17T15:21:02,336   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2024-07-17T15:21:02,338   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2024-07-17T15:21:02,339   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2024-07-17T15:21:02,341   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2024-07-17T15:21:02,342   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2024-07-17T15:21:02,344   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2024-07-17T15:21:02,345   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2024-07-17T15:21:02,347   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2024-07-17T15:21:02,349   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2024-07-17T15:21:02,350   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2024-07-17T15:21:02,352   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2024-07-17T15:21:02,353   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2024-07-17T15:21:02,355   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2024-07-17T15:21:02,357   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2024-07-17T15:21:02,358   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2024-07-17T15:21:02,360   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2024-07-17T15:21:02,361   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2024-07-17T15:21:02,363   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2024-07-17T15:21:02,364   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2024-07-17T15:21:02,366   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2024-07-17T15:21:02,367   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2024-07-17T15:21:02,369   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2024-07-17T15:21:02,371   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2024-07-17T15:21:02,372   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2024-07-17T15:21:02,374   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2024-07-17T15:21:02,375   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2024-07-17T15:21:02,377   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2024-07-17T15:21:02,379   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2024-07-17T15:21:02,380   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2024-07-17T15:21:02,382   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2024-07-17T15:21:02,383   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2024-07-17T15:21:02,385   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2024-07-17T15:21:02,386   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2024-07-17T15:21:02,388   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2024-07-17T15:21:02,389   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2024-07-17T15:21:02,391   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2024-07-17T15:21:02,393   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2024-07-17T15:21:02,394   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2024-07-17T15:21:02,396   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2024-07-17T15:21:02,397   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2024-07-17T15:21:02,399   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2024-07-17T15:21:02,400   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2024-07-17T15:21:02,402   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2024-07-17T15:21:02,403   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2024-07-17T15:21:02,405   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2024-07-17T15:21:02,406   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2024-07-17T15:21:02,408   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2024-07-17T15:21:02,410   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2024-07-17T15:21:02,411   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2024-07-17T15:21:02,413   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2024-07-17T15:21:02,414   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2024-07-17T15:21:02,416   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2024-07-17T15:21:02,417   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2024-07-17T15:21:02,419   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2024-07-17T15:21:02,420   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2024-07-17T15:21:02,422   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2024-07-17T15:21:02,423   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2024-07-17T15:21:02,425   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2024-07-17T15:21:02,426   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2024-07-17T15:21:02,428   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2024-07-17T15:21:02,429   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2024-07-17T15:21:02,431   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2024-07-17T15:21:02,432   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2024-07-17T15:21:02,434   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2024-07-17T15:21:02,435   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2024-07-17T15:21:02,437   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2024-07-17T15:21:02,439   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2024-07-17T15:21:02,440   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2024-07-17T15:21:02,442   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2024-07-17T15:21:02,443   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2024-07-17T15:21:02,445   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2024-07-17T15:21:02,446   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2024-07-17T15:21:02,448   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2024-07-17T15:21:02,449   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2024-07-17T15:21:02,451   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2024-07-17T15:21:02,453   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2024-07-17T15:21:02,454   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2024-07-17T15:21:02,456   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2024-07-17T15:21:02,457   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2024-07-17T15:21:02,459   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2024-07-17T15:21:02,460   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2024-07-17T15:21:02,462   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2024-07-17T15:21:02,463   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2024-07-17T15:21:02,465   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2024-07-17T15:21:02,466   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2024-07-17T15:21:02,468   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2024-07-17T15:21:02,469   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2024-07-17T15:21:02,471   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2024-07-17T15:21:02,473   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2024-07-17T15:21:02,474   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2024-07-17T15:21:02,476   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2024-07-17T15:21:02,477   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2024-07-17T15:21:02,479   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2024-07-17T15:21:02,480   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2024-07-17T15:21:02,482   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2024-07-17T15:21:02,483   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2024-07-17T15:21:02,485   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2024-07-17T15:21:02,486   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2024-07-17T15:21:02,488   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2024-07-17T15:21:02,489   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2024-07-17T15:21:02,491   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2024-07-17T15:21:02,493   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2024-07-17T15:21:02,494   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2024-07-17T15:21:02,495   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2024-07-17T15:21:02,497   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2024-07-17T15:21:02,499   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2024-07-17T15:21:02,500   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2024-07-17T15:21:02,502   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2024-07-17T15:21:02,503   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2024-07-17T15:21:02,505   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2024-07-17T15:21:02,506   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2024-07-17T15:21:02,508   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2024-07-17T15:21:02,509   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2024-07-17T15:21:02,511   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2024-07-17T15:21:02,513   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2024-07-17T15:21:02,514   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2024-07-17T15:21:02,516   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2024-07-17T15:21:02,517   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2024-07-17T15:21:02,519   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2024-07-17T15:21:02,520   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2024-07-17T15:21:02,522   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2024-07-17T15:21:02,523   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2024-07-17T15:21:02,525   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2024-07-17T15:21:02,526   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2024-07-17T15:21:02,528   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2024-07-17T15:21:02,529   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2024-07-17T15:21:02,531   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2024-07-17T15:21:02,532   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2024-07-17T15:21:02,534   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2024-07-17T15:21:02,535   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2024-07-17T15:21:02,537   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2024-07-17T15:21:02,538   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2024-07-17T15:21:02,540   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2024-07-17T15:21:02,541   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2024-07-17T15:21:02,543   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2024-07-17T15:21:02,545   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2024-07-17T15:21:02,546   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2024-07-17T15:21:02,548   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2024-07-17T15:21:02,550   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2024-07-17T15:21:02,551   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2024-07-17T15:21:02,553   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2024-07-17T15:21:02,554   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2024-07-17T15:21:02,556   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2024-07-17T15:21:02,558   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2024-07-17T15:21:02,560   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2024-07-17T15:21:02,561   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2024-07-17T15:21:02,563   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2024-07-17T15:21:02,565   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2024-07-17T15:21:02,566   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2024-07-17T15:21:02,569   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2024-07-17T15:21:02,570   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2024-07-17T15:21:02,572   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2024-07-17T15:21:02,573   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2024-07-17T15:21:02,575   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2024-07-17T15:21:02,576   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2024-07-17T15:21:02,578   adding 'moleculekit/smallmol/__init__.py'
2024-07-17T15:21:02,584   adding 'moleculekit/smallmol/smallmol.py'
2024-07-17T15:21:02,586   adding 'moleculekit/smallmol/smallmolcdp.py'
2024-07-17T15:21:02,589   adding 'moleculekit/smallmol/smallmollib.py'
2024-07-17T15:21:02,591   adding 'moleculekit/smallmol/test_smallmol.py'
2024-07-17T15:21:02,593   adding 'moleculekit/smallmol/test_smallmollib.py'
2024-07-17T15:21:02,595   adding 'moleculekit/smallmol/util.py'
2024-07-17T15:21:02,597   adding 'moleculekit/smallmol/tools/__init__.py'
2024-07-17T15:21:02,600   adding 'moleculekit/smallmol/tools/clustering.py'
2024-07-17T15:21:02,601   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2024-07-17T15:21:02,604   adding 'moleculekit/smallmol/tools/test_tools.py'
2024-07-17T15:21:02,696   adding 'moleculekit/tmalign/tmalign_util.cpp'
2024-07-17T15:21:02,705   adding 'moleculekit/tmalign/tmalign_util.pyx'
2024-07-17T15:21:02,707   adding 'moleculekit/tmalign/tmalignlib.pxd'
2024-07-17T15:21:02,709   adding 'moleculekit/tmalign/include/TMAlign.h'
2024-07-17T15:21:02,727   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2024-07-17T15:21:02,730   adding 'moleculekit/tools/__init__.py'
2024-07-17T15:21:02,732   adding 'moleculekit/tools/atomtyper.py'
2024-07-17T15:21:02,735   adding 'moleculekit/tools/autosegment.py'
2024-07-17T15:21:02,737   adding 'moleculekit/tools/crystalpacking.py'
2024-07-17T15:21:02,741   adding 'moleculekit/tools/detect.py'
2024-07-17T15:21:02,743   adding 'moleculekit/tools/docking.py'
2024-07-17T15:21:02,746   adding 'moleculekit/tools/graphalignment.py'
2024-07-17T15:21:02,748   adding 'moleculekit/tools/hhblitsprofile.py'
2024-07-17T15:21:02,749   adding 'moleculekit/tools/modelling.py'
2024-07-17T15:21:02,751   adding 'moleculekit/tools/moleculechecks.py'
2024-07-17T15:21:02,758   adding 'moleculekit/tools/preparation.py'
2024-07-17T15:21:02,761   adding 'moleculekit/tools/preparation_customres.py'
2024-07-17T15:21:02,763   adding 'moleculekit/tools/sequencestructuralalignment.py'
2024-07-17T15:21:02,767   adding 'moleculekit/tools/voxeldescriptors.py'
2024-07-17T15:21:02,769   adding 'moleculekit/tools/obabel_tools/__init__.py'
2024-07-17T15:21:02,771   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2024-07-17T15:21:02,866   adding 'moleculekit/wrapping/wrapping.cpp'
2024-07-17T15:21:02,875   adding 'moleculekit/wrapping/wrapping.pyx'
2024-07-17T15:21:02,877   adding 'moleculekit-1.9.5.dist-info/LICENSE'
2024-07-17T15:21:02,878   adding 'moleculekit-1.9.5.dist-info/METADATA'
2024-07-17T15:21:02,879   adding 'moleculekit-1.9.5.dist-info/WHEEL'
2024-07-17T15:21:02,881   adding 'moleculekit-1.9.5.dist-info/top_level.txt'
2024-07-17T15:21:02,886   adding 'moleculekit-1.9.5.dist-info/RECORD'
2024-07-17T15:21:03,053   removing build/bdist.linux-armv7l/wheel
2024-07-17T15:21:03,330   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2024-07-17T15:21:03,652   Created wheel for moleculekit: filename=moleculekit-1.9.5-cp39-cp39-linux_armv7l.whl size=14934100 sha256=37000eaa9ab45de3efde4c7d401db9f27d09f4d2ab56b7ea643dc0d507216464
2024-07-17T15:21:03,653   Stored in directory: /tmp/pip-ephem-wheel-cache-3jpjhe4x/wheels/c3/d2/18/cc22e5092b364cdafbd076b86bb2d44fb6119af3e7a47074f8
2024-07-17T15:21:03,681 Successfully built moleculekit
2024-07-17T15:21:04,036 Removed build tracker: '/tmp/pip-build-tracker-mi4fbxu1'