2024-07-17T22:58:11,422 Created temporary directory: /tmp/pip-build-tracker-zaz4v157 2024-07-17T22:58:11,423 Initialized build tracking at /tmp/pip-build-tracker-zaz4v157 2024-07-17T22:58:11,424 Created build tracker: /tmp/pip-build-tracker-zaz4v157 2024-07-17T22:58:11,424 Entered build tracker: /tmp/pip-build-tracker-zaz4v157 2024-07-17T22:58:11,425 Created temporary directory: /tmp/pip-wheel-fja2_r0x 2024-07-17T22:58:11,428 Created temporary directory: /tmp/pip-ephem-wheel-cache-13ue1ppq 2024-07-17T22:58:11,453 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-17T22:58:11,457 2 location(s) to search for versions of biobrigit: 2024-07-17T22:58:11,457 * https://pypi.org/simple/biobrigit/ 2024-07-17T22:58:11,457 * https://www.piwheels.org/simple/biobrigit/ 2024-07-17T22:58:11,458 Fetching project page and analyzing links: https://pypi.org/simple/biobrigit/ 2024-07-17T22:58:11,458 Getting page https://pypi.org/simple/biobrigit/ 2024-07-17T22:58:11,460 Found index url https://pypi.org/simple/ 2024-07-17T22:58:11,672 Fetched page https://pypi.org/simple/biobrigit/ as application/vnd.pypi.simple.v1+json 2024-07-17T22:58:11,674 Skipping link: No binaries permitted for biobrigit: https://files.pythonhosted.org/packages/8a/c8/8621a5ea1136c157693f17e1c96421a8f2ca1c4e4861ec13a6a2df098b9c/biobrigit-0.0.7-py2.py3-none-any.whl (from https://pypi.org/simple/biobrigit/) (requires-python:>=3.6) 2024-07-17T22:58:11,675 Found link https://files.pythonhosted.org/packages/96/42/70d94f0b01e174232da3821087efac634bb59a44cc30e0ef1cb775206ca0/biobrigit-0.0.7.tar.gz (from https://pypi.org/simple/biobrigit/) (requires-python:>=3.6), version: 0.0.7 2024-07-17T22:58:11,675 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobrigit/ 2024-07-17T22:58:11,676 Getting page https://www.piwheels.org/simple/biobrigit/ 2024-07-17T22:58:11,677 Found index url https://www.piwheels.org/simple/ 2024-07-17T22:58:11,826 Fetched page https://www.piwheels.org/simple/biobrigit/ as text/html 2024-07-17T22:58:11,827 Skipping link: not a file: https://www.piwheels.org/simple/biobrigit/ 2024-07-17T22:58:11,828 Skipping link: not a file: https://pypi.org/simple/biobrigit/ 2024-07-17T22:58:11,848 Given no hashes to check 1 links for project 'biobrigit': discarding no candidates 2024-07-17T22:58:11,867 Collecting biobrigit==0.0.7 2024-07-17T22:58:11,870 Created temporary directory: /tmp/pip-unpack-g19sgjcq 2024-07-17T22:58:12,097 Downloading biobrigit-0.0.7.tar.gz (20.8 MB) 2024-07-17T22:58:16,519 Added biobrigit==0.0.7 from https://files.pythonhosted.org/packages/96/42/70d94f0b01e174232da3821087efac634bb59a44cc30e0ef1cb775206ca0/biobrigit-0.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-zaz4v157' 2024-07-17T22:58:16,521 Running setup.py (path:/tmp/pip-wheel-fja2_r0x/biobrigit_26de0d93acc2467ebc711896863a1192/setup.py) egg_info for package biobrigit 2024-07-17T22:58:16,522 Created temporary directory: /tmp/pip-pip-egg-info-ck63v3b7 2024-07-17T22:58:16,523 Preparing metadata (setup.py): started 2024-07-17T22:58:16,524 Running command python setup.py egg_info 2024-07-17T22:58:17,684 running egg_info 2024-07-17T22:58:17,686 creating /tmp/pip-pip-egg-info-ck63v3b7/biobrigit.egg-info 2024-07-17T22:58:17,711 writing /tmp/pip-pip-egg-info-ck63v3b7/biobrigit.egg-info/PKG-INFO 2024-07-17T22:58:17,715 writing dependency_links to /tmp/pip-pip-egg-info-ck63v3b7/biobrigit.egg-info/dependency_links.txt 2024-07-17T22:58:17,717 writing entry points to /tmp/pip-pip-egg-info-ck63v3b7/biobrigit.egg-info/entry_points.txt 2024-07-17T22:58:17,718 writing requirements to /tmp/pip-pip-egg-info-ck63v3b7/biobrigit.egg-info/requires.txt 2024-07-17T22:58:17,719 writing top-level names to /tmp/pip-pip-egg-info-ck63v3b7/biobrigit.egg-info/top_level.txt 2024-07-17T22:58:17,721 writing manifest file '/tmp/pip-pip-egg-info-ck63v3b7/biobrigit.egg-info/SOURCES.txt' 2024-07-17T22:58:17,811 reading manifest file '/tmp/pip-pip-egg-info-ck63v3b7/biobrigit.egg-info/SOURCES.txt' 2024-07-17T22:58:17,813 reading manifest template 'MANIFEST.in' 2024-07-17T22:58:17,816 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-07-17T22:58:17,817 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-07-17T22:58:17,819 warning: no files found matching '*.rst' under directory 'docs' 2024-07-17T22:58:17,821 warning: no files found matching 'conf.py' under directory 'docs' 2024-07-17T22:58:17,822 warning: no files found matching 'Makefile' under directory 'docs' 2024-07-17T22:58:17,824 warning: no files found matching 'make.bat' under directory 'docs' 2024-07-17T22:58:17,826 warning: no files found matching '*.jpg' under directory 'docs' 2024-07-17T22:58:17,830 warning: no files found matching '*.gif' under directory 'docs' 2024-07-17T22:58:17,830 adding license file 'LICENSE' 2024-07-17T22:58:17,831 adding license file 'AUTHORS.rst' 2024-07-17T22:58:17,832 writing manifest file '/tmp/pip-pip-egg-info-ck63v3b7/biobrigit.egg-info/SOURCES.txt' 2024-07-17T22:58:17,951 Preparing metadata (setup.py): finished with status 'done' 2024-07-17T22:58:17,955 Source in /tmp/pip-wheel-fja2_r0x/biobrigit_26de0d93acc2467ebc711896863a1192 has version 0.0.7, which satisfies requirement biobrigit==0.0.7 from https://files.pythonhosted.org/packages/96/42/70d94f0b01e174232da3821087efac634bb59a44cc30e0ef1cb775206ca0/biobrigit-0.0.7.tar.gz 2024-07-17T22:58:17,956 Removed biobrigit==0.0.7 from https://files.pythonhosted.org/packages/96/42/70d94f0b01e174232da3821087efac634bb59a44cc30e0ef1cb775206ca0/biobrigit-0.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-zaz4v157' 2024-07-17T22:58:17,962 Created temporary directory: /tmp/pip-unpack-1vvwl7ul 2024-07-17T22:58:17,963 Created temporary directory: /tmp/pip-unpack-qf_bzn0i 2024-07-17T22:58:17,971 Building wheels for collected packages: biobrigit 2024-07-17T22:58:17,976 Created temporary directory: /tmp/pip-wheel-6utjnsq5 2024-07-17T22:58:17,977 Building wheel for biobrigit (setup.py): started 2024-07-17T22:58:17,978 Destination directory: /tmp/pip-wheel-6utjnsq5 2024-07-17T22:58:17,978 Running command python setup.py bdist_wheel 2024-07-17T22:58:19,142 running bdist_wheel 2024-07-17T22:58:19,243 running build 2024-07-17T22:58:19,244 running build_py 2024-07-17T22:58:19,272 creating build 2024-07-17T22:58:19,273 creating build/lib 2024-07-17T22:58:19,273 creating build/lib/tests 2024-07-17T22:58:19,275 copying tests/__init__.py -> build/lib/tests 2024-07-17T22:58:19,277 copying tests/test_brigit.py -> build/lib/tests 2024-07-17T22:58:19,279 creating build/lib/biobrigit 2024-07-17T22:58:19,281 copying biobrigit/biobrigit.py -> build/lib/biobrigit 2024-07-17T22:58:19,283 copying biobrigit/__init__.py -> build/lib/biobrigit 2024-07-17T22:58:19,285 copying biobrigit/__main__.py -> build/lib/biobrigit 2024-07-17T22:58:19,288 creating build/lib/biobrigit/utils 2024-07-17T22:58:19,289 copying biobrigit/utils/models.py -> build/lib/biobrigit/utils 2024-07-17T22:58:19,291 copying biobrigit/utils/__init__.py -> build/lib/biobrigit/utils 2024-07-17T22:58:19,293 copying biobrigit/utils/tools.py -> build/lib/biobrigit/utils 2024-07-17T22:58:19,295 copying biobrigit/utils/data.py -> build/lib/biobrigit/utils 2024-07-17T22:58:19,297 copying biobrigit/utils/layers.py -> build/lib/biobrigit/utils 2024-07-17T22:58:19,299 copying biobrigit/utils/pdb_parser.py -> build/lib/biobrigit/utils 2024-07-17T22:58:19,301 copying biobrigit/utils/scoring.py -> build/lib/biobrigit/utils 2024-07-17T22:58:19,305 creating build/lib/biobrigit/utils/trained_models 2024-07-17T22:58:19,306 copying biobrigit/utils/trained_models/__init__.py -> build/lib/biobrigit/utils/trained_models 2024-07-17T22:58:19,308 creating build/lib/biobrigit/utils/stats 2024-07-17T22:58:19,309 copying biobrigit/utils/stats/__init__.py -> build/lib/biobrigit/utils/stats 2024-07-17T22:58:19,310 running egg_info 2024-07-17T22:58:19,372 writing biobrigit.egg-info/PKG-INFO 2024-07-17T22:58:19,375 writing dependency_links to biobrigit.egg-info/dependency_links.txt 2024-07-17T22:58:19,377 writing entry points to biobrigit.egg-info/entry_points.txt 2024-07-17T22:58:19,378 writing requirements to biobrigit.egg-info/requires.txt 2024-07-17T22:58:19,379 writing top-level names to biobrigit.egg-info/top_level.txt 2024-07-17T22:58:19,412 reading manifest file 'biobrigit.egg-info/SOURCES.txt' 2024-07-17T22:58:19,415 reading manifest template 'MANIFEST.in' 2024-07-17T22:58:19,418 warning: no previously-included files matching '__pycache__' found under directory '*' 2024-07-17T22:58:19,419 warning: no previously-included files matching '*.py[co]' found under directory '*' 2024-07-17T22:58:19,421 warning: no files found matching '*.rst' under directory 'docs' 2024-07-17T22:58:19,422 warning: no files found matching 'conf.py' under directory 'docs' 2024-07-17T22:58:19,423 warning: no files found matching 'Makefile' under directory 'docs' 2024-07-17T22:58:19,424 warning: no files found matching 'make.bat' under directory 'docs' 2024-07-17T22:58:19,426 warning: no files found matching '*.jpg' under directory 'docs' 2024-07-17T22:58:19,430 warning: no files found matching '*.gif' under directory 'docs' 2024-07-17T22:58:19,431 adding license file 'LICENSE' 2024-07-17T22:58:19,431 adding license file 'AUTHORS.rst' 2024-07-17T22:58:19,433 writing manifest file 'biobrigit.egg-info/SOURCES.txt' 2024-07-17T22:58:19,437 copying biobrigit/utils/trained_models/BrigitCNN.bak -> build/lib/biobrigit/utils/trained_models 2024-07-17T22:58:19,759 copying biobrigit/utils/stats/gaussian_statistics.json -> build/lib/biobrigit/utils/stats 2024-07-17T22:58:19,765 copying biobrigit/utils/stats/residue_statistics.json -> build/lib/biobrigit/utils/stats 2024-07-17T22:58:19,795 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-07-17T22:58:19,796 !! 2024-07-17T22:58:19,797 ******************************************************************************** 2024-07-17T22:58:19,798 Please avoid running ``setup.py`` directly. 2024-07-17T22:58:19,798 Instead, use pypa/build, pypa/installer or other 2024-07-17T22:58:19,799 standards-based tools. 2024-07-17T22:58:19,800 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-07-17T22:58:19,800 ******************************************************************************** 2024-07-17T22:58:19,801 !! 2024-07-17T22:58:19,802 self.initialize_options() 2024-07-17T22:58:19,823 installing to build/bdist.linux-armv7l/wheel 2024-07-17T22:58:19,823 running install 2024-07-17T22:58:19,847 running install_lib 2024-07-17T22:58:19,874 creating build/bdist.linux-armv7l 2024-07-17T22:58:19,874 creating build/bdist.linux-armv7l/wheel 2024-07-17T22:58:19,876 creating build/bdist.linux-armv7l/wheel/tests 2024-07-17T22:58:19,877 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2024-07-17T22:58:19,879 copying build/lib/tests/test_brigit.py -> build/bdist.linux-armv7l/wheel/tests 2024-07-17T22:58:19,881 creating build/bdist.linux-armv7l/wheel/biobrigit 2024-07-17T22:58:19,882 copying build/lib/biobrigit/biobrigit.py -> build/bdist.linux-armv7l/wheel/biobrigit 2024-07-17T22:58:19,886 copying build/lib/biobrigit/__init__.py -> build/bdist.linux-armv7l/wheel/biobrigit 2024-07-17T22:58:19,888 creating build/bdist.linux-armv7l/wheel/biobrigit/utils 2024-07-17T22:58:19,890 creating build/bdist.linux-armv7l/wheel/biobrigit/utils/trained_models 2024-07-17T22:58:19,891 copying build/lib/biobrigit/utils/trained_models/BrigitCNN.bak -> build/bdist.linux-armv7l/wheel/biobrigit/utils/trained_models 2024-07-17T22:58:20,201 copying build/lib/biobrigit/utils/trained_models/__init__.py -> build/bdist.linux-armv7l/wheel/biobrigit/utils/trained_models 2024-07-17T22:58:20,202 copying build/lib/biobrigit/utils/models.py -> build/bdist.linux-armv7l/wheel/biobrigit/utils 2024-07-17T22:58:20,205 copying build/lib/biobrigit/utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobrigit/utils 2024-07-17T22:58:20,207 copying build/lib/biobrigit/utils/tools.py -> build/bdist.linux-armv7l/wheel/biobrigit/utils 2024-07-17T22:58:20,210 copying build/lib/biobrigit/utils/data.py -> build/bdist.linux-armv7l/wheel/biobrigit/utils 2024-07-17T22:58:20,212 copying build/lib/biobrigit/utils/layers.py -> build/bdist.linux-armv7l/wheel/biobrigit/utils 2024-07-17T22:58:20,214 creating build/bdist.linux-armv7l/wheel/biobrigit/utils/stats 2024-07-17T22:58:20,215 copying build/lib/biobrigit/utils/stats/__init__.py -> build/bdist.linux-armv7l/wheel/biobrigit/utils/stats 2024-07-17T22:58:20,217 copying build/lib/biobrigit/utils/stats/gaussian_statistics.json -> build/bdist.linux-armv7l/wheel/biobrigit/utils/stats 2024-07-17T22:58:20,222 copying build/lib/biobrigit/utils/stats/residue_statistics.json -> build/bdist.linux-armv7l/wheel/biobrigit/utils/stats 2024-07-17T22:58:20,225 copying build/lib/biobrigit/utils/pdb_parser.py -> build/bdist.linux-armv7l/wheel/biobrigit/utils 2024-07-17T22:58:20,228 copying build/lib/biobrigit/utils/scoring.py -> build/bdist.linux-armv7l/wheel/biobrigit/utils 2024-07-17T22:58:20,232 copying build/lib/biobrigit/__main__.py -> build/bdist.linux-armv7l/wheel/biobrigit 2024-07-17T22:58:20,233 running install_data 2024-07-17T22:58:20,260 creating build/bdist.linux-armv7l/wheel/biobrigit-0.0.7.data 2024-07-17T22:58:20,261 creating build/bdist.linux-armv7l/wheel/biobrigit-0.0.7.data/data 2024-07-17T22:58:20,261 copying biobrigit/utils/stats/gaussian_statistics.json -> build/bdist.linux-armv7l/wheel/biobrigit-0.0.7.data/data/ 2024-07-17T22:58:20,268 copying biobrigit/utils/stats/residue_statistics.json -> build/bdist.linux-armv7l/wheel/biobrigit-0.0.7.data/data/ 2024-07-17T22:58:20,271 copying biobrigit/utils/trained_models/BrigitCNN.bak -> build/bdist.linux-armv7l/wheel/biobrigit-0.0.7.data/data/ 2024-07-17T22:58:20,598 copying README.md -> build/bdist.linux-armv7l/wheel/biobrigit-0.0.7.data/data/ 2024-07-17T22:58:20,600 running install_egg_info 2024-07-17T22:58:20,633 Copying biobrigit.egg-info to build/bdist.linux-armv7l/wheel/biobrigit-0.0.7-py3.11.egg-info 2024-07-17T22:58:20,648 running install_scripts 2024-07-17T22:58:20,665 creating build/bdist.linux-armv7l/wheel/biobrigit-0.0.7.dist-info/WHEEL 2024-07-17T22:58:20,668 creating '/tmp/pip-wheel-6utjnsq5/biobrigit-0.0.7-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-17T22:58:20,670 adding 'biobrigit/__init__.py' 2024-07-17T22:58:20,672 adding 'biobrigit/__main__.py' 2024-07-17T22:58:20,675 adding 'biobrigit/biobrigit.py' 2024-07-17T22:58:20,677 adding 'biobrigit/utils/__init__.py' 2024-07-17T22:58:20,679 adding 'biobrigit/utils/data.py' 2024-07-17T22:58:20,681 adding 'biobrigit/utils/layers.py' 2024-07-17T22:58:20,682 adding 'biobrigit/utils/models.py' 2024-07-17T22:58:20,685 adding 'biobrigit/utils/pdb_parser.py' 2024-07-17T22:58:20,687 adding 'biobrigit/utils/scoring.py' 2024-07-17T22:58:20,689 adding 'biobrigit/utils/tools.py' 2024-07-17T22:58:20,691 adding 'biobrigit/utils/stats/__init__.py' 2024-07-17T22:58:20,711 adding 'biobrigit/utils/stats/gaussian_statistics.json' 2024-07-17T22:58:20,717 adding 'biobrigit/utils/stats/residue_statistics.json' 2024-07-17T22:58:23,954 adding 'biobrigit/utils/trained_models/BrigitCNN.bak' 2024-07-17T22:58:24,088 adding 'biobrigit/utils/trained_models/__init__.py' 2024-07-17T22:58:27,333 adding 'biobrigit-0.0.7.data/data/BrigitCNN.bak' 2024-07-17T22:58:27,468 adding 'biobrigit-0.0.7.data/data/README.md' 2024-07-17T22:58:27,488 adding 'biobrigit-0.0.7.data/data/gaussian_statistics.json' 2024-07-17T22:58:27,494 adding 'biobrigit-0.0.7.data/data/residue_statistics.json' 2024-07-17T22:58:27,497 adding 'tests/__init__.py' 2024-07-17T22:58:27,498 adding 'tests/test_brigit.py' 2024-07-17T22:58:27,499 adding 'biobrigit-0.0.7.dist-info/AUTHORS.rst' 2024-07-17T22:58:27,501 adding 'biobrigit-0.0.7.dist-info/LICENSE' 2024-07-17T22:58:27,503 adding 'biobrigit-0.0.7.dist-info/METADATA' 2024-07-17T22:58:27,504 adding 'biobrigit-0.0.7.dist-info/WHEEL' 2024-07-17T22:58:27,505 adding 'biobrigit-0.0.7.dist-info/entry_points.txt' 2024-07-17T22:58:27,505 adding 'biobrigit-0.0.7.dist-info/top_level.txt' 2024-07-17T22:58:27,506 adding 'biobrigit-0.0.7.dist-info/RECORD' 2024-07-17T22:58:27,902 removing build/bdist.linux-armv7l/wheel 2024-07-17T22:58:28,051 Building wheel for biobrigit (setup.py): finished with status 'done' 2024-07-17T22:58:28,448 Created wheel for biobrigit: filename=biobrigit-0.0.7-py2.py3-none-any.whl size=40054667 sha256=3ca4453988f98d3c7bf023af0a2dce45d5482108ee8ed75cc550b29bb5129c58 2024-07-17T22:58:28,449 Stored in directory: /tmp/pip-ephem-wheel-cache-13ue1ppq/wheels/47/ba/11/7234ba9617dcca9594b9a00dca48be86fbccac652b65bac60a 2024-07-17T22:58:28,473 Successfully built biobrigit 2024-07-17T22:58:29,438 Removed build tracker: '/tmp/pip-build-tracker-zaz4v157'