2024-07-18T03:16:19,901 Created temporary directory: /tmp/pip-build-tracker-665oa5lx 2024-07-18T03:16:19,902 Initialized build tracking at /tmp/pip-build-tracker-665oa5lx 2024-07-18T03:16:19,903 Created build tracker: /tmp/pip-build-tracker-665oa5lx 2024-07-18T03:16:19,903 Entered build tracker: /tmp/pip-build-tracker-665oa5lx 2024-07-18T03:16:19,904 Created temporary directory: /tmp/pip-wheel-zp3_g0sq 2024-07-18T03:16:19,907 Created temporary directory: /tmp/pip-ephem-wheel-cache-olhyokva 2024-07-18T03:16:19,930 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-18T03:16:19,934 2 location(s) to search for versions of singlem: 2024-07-18T03:16:19,934 * https://pypi.org/simple/singlem/ 2024-07-18T03:16:19,934 * https://www.piwheels.org/simple/singlem/ 2024-07-18T03:16:19,934 Fetching project page and analyzing links: https://pypi.org/simple/singlem/ 2024-07-18T03:16:19,935 Getting page https://pypi.org/simple/singlem/ 2024-07-18T03:16:19,937 Found index url https://pypi.org/simple/ 2024-07-18T03:16:20,155 Fetched page https://pypi.org/simple/singlem/ as application/vnd.pypi.simple.v1+json 2024-07-18T03:16:20,162 Found link https://files.pythonhosted.org/packages/35/55/72780c79146b2ccd465016b28eccbe6c326493f5a8db3c489eda3382fbb1/singlem-0.7.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.7.1 2024-07-18T03:16:20,163 Found link https://files.pythonhosted.org/packages/17/8b/f553c11bbb3e950516589aa26299b85098d0ac78405a4ebacefa023de306/singlem-0.8.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.0 2024-07-18T03:16:20,163 Found link https://files.pythonhosted.org/packages/b6/f9/9538a096be3c2cc820642d87a626e45ce03f55716175025605b2d33f5e39/singlem-0.8.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.1 2024-07-18T03:16:20,164 Found link https://files.pythonhosted.org/packages/ca/c5/95b117cf1ebc381cf922280dd0aaaf9967777c903c8a079330728a278709/singlem-0.8.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.2 2024-07-18T03:16:20,164 Found link https://files.pythonhosted.org/packages/9d/8d/156892825f51ea215336c9171ba98ddd3003bc72538232c3e5cc20840b9c/singlem-0.9.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.9.0 2024-07-18T03:16:20,165 Found link https://files.pythonhosted.org/packages/9c/7c/bdc416d19613e03f631006b9e63355480dfd5438007172002652014dccd5/singlem-0.11.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.11.0 2024-07-18T03:16:20,166 Found link https://files.pythonhosted.org/packages/a3/67/58f5f073fa50c02cf0ccbade3bc0823976f29d12545e48a0b2f2c45288f9/singlem-0.12.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.0 2024-07-18T03:16:20,167 Found link https://files.pythonhosted.org/packages/68/8c/8bd9277ff17836d14658186469cb05376569f052f90cb3a82a449ac7eea4/singlem-0.12.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.1 2024-07-18T03:16:20,167 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/17/71/31b5c5d9541c9104d713a0eced18a124a696ee81f9f9dddd578e02b4380f/singlem-0.13.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-18T03:16:20,168 Found link https://files.pythonhosted.org/packages/db/0b/e73e8b154bbca8f6fb81337791f7420b54b128f3682f9b394843c6559bbc/singlem-0.13.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.0 2024-07-18T03:16:20,169 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/9c/c2/59c1904feff0407c2ca5f1ec0ae098f42415c722f36cf01836c400a0e6ec/singlem-0.13.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-18T03:16:20,169 Found link https://files.pythonhosted.org/packages/54/6a/d718c26f15b38a4b0e999f8246dcfcd5b7237c2298009031ebd18d7e2a7d/singlem-0.13.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.1 2024-07-18T03:16:20,170 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/aa/67/a4cf9b0c9f573201e887a91a98251ad31dace8433b735c7f698a9e94ebc0/singlem-0.13.2-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-18T03:16:20,171 Found link https://files.pythonhosted.org/packages/2a/bb/75b1c30a8c30835d277ce6cacbd827fde3f094648bf6c5d4fff5d922b2f7/singlem-0.13.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.2 2024-07-18T03:16:20,172 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/50/5a/f72ef558f096a3c9706e30c3bd0dab98c42539b6d507b8e8554c4433edda/singlem-0.14.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-18T03:16:20,172 Found link https://files.pythonhosted.org/packages/7c/7b/ca7227ef1d9151143a723d74b26bca4d18c6d60870348b4a4aee539ad343/singlem-0.14.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.14.0 2024-07-18T03:16:20,173 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/4c/a3/98cd7cfaef694f36655d9c8d193774e7d94fd9e0f6fc9d92f402fc88b898/singlem-0.15.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-18T03:16:20,173 Found link https://files.pythonhosted.org/packages/b1/7c/e32b071b5a3f79fb69c39f9a172a179a3c5071e5344fc52387b561fbf38e/singlem-0.15.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.0 2024-07-18T03:16:20,174 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/fc/16/ea6f071e069d735d896eec440e65fdeaf88d69123893b1e7198bde08ba5e/singlem-0.15.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-18T03:16:20,174 Found link https://files.pythonhosted.org/packages/ed/e7/34484f28ce4bb10dc929264cea43d5683c213858b91520243c197eba77b0/singlem-0.15.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.1 2024-07-18T03:16:20,175 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/22/91/db397eac675c00346bf5cd791b7bf0e7ce239b22ae55f255af6f35e34d7e/singlem-0.16.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-18T03:16:20,175 Found link https://files.pythonhosted.org/packages/04/5a/0eb1e0bcf0d3fdeb87d543d86ef1c5cba4e5dedb4165a06f21b84e80f744/singlem-0.16.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.16.0 2024-07-18T03:16:20,176 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/f7/8b/22924e7ea1fdafa961cd2534919ae78fb024516d61e5c3f988bd1a92cd3c/singlem-0.17.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-18T03:16:20,176 Found link https://files.pythonhosted.org/packages/a6/b9/168d5463ab41e4f0511b7fe868b80d019dcedb5c14b3b04eea91b39ab5e5/singlem-0.17.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.17.0 2024-07-18T03:16:20,177 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/f2/ff/e5fa9cd9e05e0d066f173a6d1f89a54fd749a192f1107bd24807abc20290/singlem-0.18.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-18T03:16:20,178 Found link https://files.pythonhosted.org/packages/47/dd/5bc943ee3849e5e8d5be202fe563beb4e76604310f136c87a6524ee2d6c4/singlem-0.18.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.18.0 2024-07-18T03:16:20,178 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/db/cf/78616e32c3df6f385cc3db921b1fb2099fee3cd03490fbed44cd3cde10f0/singlem-0.18.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-18T03:16:20,179 Found link https://files.pythonhosted.org/packages/6c/99/ff18fa38032984bc8dd09441ce43c0b1277ef5869ea2b836635d27023e19/singlem-0.18.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.18.1 2024-07-18T03:16:20,180 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/2d/0c/f0ca152e1d53d4a5fb23591fc717ee74da694ed5f1973fc1191de14d2c0a/singlem-0.18.2-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-18T03:16:20,180 Found link https://files.pythonhosted.org/packages/7f/d7/c4286a48ae93a74032d2ef6f765b256352dd01ce22263d69a75649dd89bc/singlem-0.18.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.18.2 2024-07-18T03:16:20,181 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/84/1a/8a17c9c2a441e8ec94ac79f90d63cb2dfd994594fc9b0ac177dd4d511a78/singlem-1.0.0b8-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-07-18T03:16:20,182 Found link https://files.pythonhosted.org/packages/3e/08/4fe229183f8c2c33255bcf7148fa79b6dd1d65453bcb99d37f82600441b7/singlem-1.0.0b8.tar.gz (from https://pypi.org/simple/singlem/), version: 1.0.0b8 2024-07-18T03:16:20,183 Fetching project page and analyzing links: https://www.piwheels.org/simple/singlem/ 2024-07-18T03:16:20,183 Getting page https://www.piwheels.org/simple/singlem/ 2024-07-18T03:16:20,184 Found index url https://www.piwheels.org/simple/ 2024-07-18T03:16:20,347 Fetched page https://www.piwheels.org/simple/singlem/ as text/html 2024-07-18T03:16:20,352 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-1.0.0b8-py3-none-any.whl#sha256=3365626c8cb55d23a5197a42572fbbb259c9dbc65b14a97f8e800c940b9a362c (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,353 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.18.1-py3-none-any.whl#sha256=31d4ed37512fc7fc55a8b5b14fa0a274996b8524b4546ce7684c37e1506709ca (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,353 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.18.0-py3-none-any.whl#sha256=1242840cbfb61ba6c0a428bc2b6d5f4023200bd886a871bc4f3071e9265c60a2 (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,354 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.17.0-py3-none-any.whl#sha256=b12f157af3e578d4a2bf5ab66f5f54ee0e66e9c9c611e08eace7e36119563e2a (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,354 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.16.0-py3-none-any.whl#sha256=899b9e72e567babdc8e689ef6c2676d7d7c58fecb2ebed82d413c75d17c4e410 (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,355 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.15.1-py3-none-any.whl#sha256=4cc1d3a1e437383de7a99970d08e9abdd2633314cf3a06760f8822d81533f512 (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,355 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.15.0-py3-none-any.whl#sha256=51ac005a1c09c7004e5639c3045e1313d39f7d8d4d77c417b63c8f4e243cec51 (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,356 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.14.0-py3-none-any.whl#sha256=184ece47180c793b14866826b9436d33ec0fd1d3c5e2cf5bf0c7625520509208 (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,356 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.2-py3-none-any.whl#sha256=0b410717882ab1cf12894ff799a530aaacb1eb2b69ad778355384c3ec5316bbb (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,357 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.1-py3-none-any.whl#sha256=950f2fc4d7e4eee5e75cc2bb2a5b7119aaa39590ee8c5fe9086ae0425a268fa3 (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,358 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.0-py3-none-any.whl#sha256=5f5cb853b85d738f19c8d06c769e4c1f5ae107ae7a2489c75185a7eeb3f0a9e6 (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,358 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.12.0-py3-none-any.whl#sha256=044eb417530be9293ed3640ebb56b5a2f8cfb34d2f8dab45e96556494cf0c2d5 (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,359 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.11.0-py3-none-any.whl#sha256=83c2697c65261566314896fee814840e77012597bb29405182cf4a3063711651 (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,359 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.9.0-py3-none-any.whl#sha256=bfb2dc9633dea53293af0244d04cb1bd0e981c01cfe3dce8cc5b7cd4cf9d7eb9 (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,360 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.8.2-py3-none-any.whl#sha256=9f7f2cf19f5d8b565a8641eed3e9925ee9112647c245999a6f685af7bfa1c001 (from https://www.piwheels.org/simple/singlem/) 2024-07-18T03:16:20,360 Skipping link: not a file: https://www.piwheels.org/simple/singlem/ 2024-07-18T03:16:20,361 Skipping link: not a file: https://pypi.org/simple/singlem/ 2024-07-18T03:16:20,383 Given no hashes to check 1 links for project 'singlem': discarding no candidates 2024-07-18T03:16:20,403 Collecting singlem==0.18.2 2024-07-18T03:16:20,405 Created temporary directory: /tmp/pip-unpack-fmzqkxq6 2024-07-18T03:16:20,629 Downloading singlem-0.18.2.tar.gz (183 kB) 2024-07-18T03:16:20,864 Added singlem==0.18.2 from https://files.pythonhosted.org/packages/7f/d7/c4286a48ae93a74032d2ef6f765b256352dd01ce22263d69a75649dd89bc/singlem-0.18.2.tar.gz to build tracker '/tmp/pip-build-tracker-665oa5lx' 2024-07-18T03:16:20,867 Running setup.py (path:/tmp/pip-wheel-zp3_g0sq/singlem_672cfdb2da2a43d5b74a8c8eb10db963/setup.py) egg_info for package singlem 2024-07-18T03:16:20,867 Created temporary directory: /tmp/pip-pip-egg-info-ucdt27zn 2024-07-18T03:16:20,868 Preparing metadata (setup.py): started 2024-07-18T03:16:20,869 Running command python setup.py egg_info 2024-07-18T03:16:22,098 running egg_info 2024-07-18T03:16:22,100 creating /tmp/pip-pip-egg-info-ucdt27zn/singlem.egg-info 2024-07-18T03:16:22,125 writing /tmp/pip-pip-egg-info-ucdt27zn/singlem.egg-info/PKG-INFO 2024-07-18T03:16:22,128 writing dependency_links to /tmp/pip-pip-egg-info-ucdt27zn/singlem.egg-info/dependency_links.txt 2024-07-18T03:16:22,129 writing entry points to /tmp/pip-pip-egg-info-ucdt27zn/singlem.egg-info/entry_points.txt 2024-07-18T03:16:22,131 writing requirements to /tmp/pip-pip-egg-info-ucdt27zn/singlem.egg-info/requires.txt 2024-07-18T03:16:22,132 writing top-level names to /tmp/pip-pip-egg-info-ucdt27zn/singlem.egg-info/top_level.txt 2024-07-18T03:16:22,134 writing manifest file '/tmp/pip-pip-egg-info-ucdt27zn/singlem.egg-info/SOURCES.txt' 2024-07-18T03:16:22,220 reading manifest file '/tmp/pip-pip-egg-info-ucdt27zn/singlem.egg-info/SOURCES.txt' 2024-07-18T03:16:22,222 reading manifest template 'MANIFEST.in' 2024-07-18T03:16:22,223 warning: no files found matching 'LICENSE' 2024-07-18T03:16:22,224 warning: no previously-included files matching '*' found under directory 'test' 2024-07-18T03:16:22,224 adding license file 'LICENCE.txt' 2024-07-18T03:16:22,227 writing manifest file '/tmp/pip-pip-egg-info-ucdt27zn/singlem.egg-info/SOURCES.txt' 2024-07-18T03:16:22,346 Preparing metadata (setup.py): finished with status 'done' 2024-07-18T03:16:22,350 Source in /tmp/pip-wheel-zp3_g0sq/singlem_672cfdb2da2a43d5b74a8c8eb10db963 has version 0.18.2, which satisfies requirement singlem==0.18.2 from https://files.pythonhosted.org/packages/7f/d7/c4286a48ae93a74032d2ef6f765b256352dd01ce22263d69a75649dd89bc/singlem-0.18.2.tar.gz 2024-07-18T03:16:22,351 Removed singlem==0.18.2 from https://files.pythonhosted.org/packages/7f/d7/c4286a48ae93a74032d2ef6f765b256352dd01ce22263d69a75649dd89bc/singlem-0.18.2.tar.gz from build tracker '/tmp/pip-build-tracker-665oa5lx' 2024-07-18T03:16:22,356 Created temporary directory: /tmp/pip-unpack-jps1y723 2024-07-18T03:16:22,357 Created temporary directory: /tmp/pip-unpack-kce7e8oc 2024-07-18T03:16:22,373 Building wheels for collected packages: singlem 2024-07-18T03:16:22,377 Created temporary directory: /tmp/pip-wheel-r53i9dhe 2024-07-18T03:16:22,378 Building wheel for singlem (setup.py): started 2024-07-18T03:16:22,379 Destination directory: /tmp/pip-wheel-r53i9dhe 2024-07-18T03:16:22,380 Running command python setup.py bdist_wheel 2024-07-18T03:16:23,449 running bdist_wheel 2024-07-18T03:16:23,546 running build 2024-07-18T03:16:23,547 running build_py 2024-07-18T03:16:23,576 creating build 2024-07-18T03:16:23,576 creating build/lib 2024-07-18T03:16:23,577 creating build/lib/singlem 2024-07-18T03:16:23,578 copying singlem/renew.py -> build/lib/singlem 2024-07-18T03:16:23,580 copying singlem/singlem_database_models.py -> build/lib/singlem 2024-07-18T03:16:23,582 copying singlem/summariser.py -> build/lib/singlem 2024-07-18T03:16:23,585 copying singlem/taxonomy_bihash.py -> build/lib/singlem 2024-07-18T03:16:23,586 copying singlem/chainsaw.py -> build/lib/singlem 2024-07-18T03:16:23,588 copying singlem/metapackage.py -> build/lib/singlem 2024-07-18T03:16:23,591 copying singlem/metagenome_otu_finder.py -> build/lib/singlem 2024-07-18T03:16:23,593 copying singlem/querier.py -> build/lib/singlem 2024-07-18T03:16:23,596 copying singlem/query_formatters.py -> build/lib/singlem 2024-07-18T03:16:23,598 copying singlem/utils.py -> build/lib/singlem 2024-07-18T03:16:23,599 copying singlem/metapackage_read_name_store.py -> build/lib/singlem 2024-07-18T03:16:23,601 copying singlem/condense.py -> build/lib/singlem 2024-07-18T03:16:23,604 copying singlem/checkm2.py -> build/lib/singlem 2024-07-18T03:16:23,606 copying singlem/otu_table_entry.py -> build/lib/singlem 2024-07-18T03:16:23,607 copying singlem/supplement.py -> build/lib/singlem 2024-07-18T03:16:23,610 copying singlem/otu_table_collection.py -> build/lib/singlem 2024-07-18T03:16:23,612 copying singlem/appraiser.py -> build/lib/singlem 2024-07-18T03:16:23,614 copying singlem/archive_otu_table.py -> build/lib/singlem 2024-07-18T03:16:23,616 copying singlem/streaming_hmm_search_result.py -> build/lib/singlem 2024-07-18T03:16:23,617 copying singlem/regenerator.py -> build/lib/singlem 2024-07-18T03:16:23,619 copying singlem/diamond_parser.py -> build/lib/singlem 2024-07-18T03:16:23,621 copying singlem/main.py -> build/lib/singlem 2024-07-18T03:16:23,625 copying singlem/pipe.py -> build/lib/singlem 2024-07-18T03:16:23,628 copying singlem/taxonomy.py -> build/lib/singlem 2024-07-18T03:16:23,630 copying singlem/sequence_database.py -> build/lib/singlem 2024-07-18T03:16:23,632 copying singlem/strain_summariser.py -> build/lib/singlem 2024-07-18T03:16:23,634 copying singlem/sequence_classes.py -> build/lib/singlem 2024-07-18T03:16:23,637 copying singlem/graftm_result.py -> build/lib/singlem 2024-07-18T03:16:23,638 copying singlem/kingfisher_sra.py -> build/lib/singlem 2024-07-18T03:16:23,640 copying singlem/hmm_logo.py -> build/lib/singlem 2024-07-18T03:16:23,642 copying singlem/sequence_extractor.py -> build/lib/singlem 2024-07-18T03:16:23,644 copying singlem/orf_length_checker.py -> build/lib/singlem 2024-07-18T03:16:23,645 copying singlem/__init__.py -> build/lib/singlem 2024-07-18T03:16:23,647 copying singlem/dereplicator.py -> build/lib/singlem 2024-07-18T03:16:23,649 copying singlem/clusterer.py -> build/lib/singlem 2024-07-18T03:16:23,651 copying singlem/genome_fasta_mux.py -> build/lib/singlem 2024-07-18T03:16:23,652 copying singlem/otu_table.py -> build/lib/singlem 2024-07-18T03:16:23,655 copying singlem/placement_parser.py -> build/lib/singlem 2024-07-18T03:16:23,657 copying singlem/pipe_taxonomy_assigner_by_query.py -> build/lib/singlem 2024-07-18T03:16:23,659 copying singlem/known_otu_table.py -> build/lib/singlem 2024-07-18T03:16:23,661 copying singlem/appraisal_result.py -> build/lib/singlem 2024-07-18T03:16:23,663 copying singlem/singlem_package.py -> build/lib/singlem 2024-07-18T03:16:23,666 copying singlem/trim_package_hmms.py -> build/lib/singlem 2024-07-18T03:16:23,668 copying singlem/run_via_os_system.py -> build/lib/singlem 2024-07-18T03:16:23,670 copying singlem/rarefier.py -> build/lib/singlem 2024-07-18T03:16:23,671 copying singlem/read_fraction.py -> build/lib/singlem 2024-07-18T03:16:23,674 copying singlem/ordered_set.py -> build/lib/singlem 2024-07-18T03:16:23,675 copying singlem/genome_size.py -> build/lib/singlem 2024-07-18T03:16:23,677 copying singlem/package_creator.py -> build/lib/singlem 2024-07-18T03:16:23,679 copying singlem/pipe_sequence_extractor.py -> build/lib/singlem 2024-07-18T03:16:23,681 copying singlem/version.py -> build/lib/singlem 2024-07-18T03:16:23,682 copying singlem/diamond_spkg_searcher.py -> build/lib/singlem 2024-07-18T03:16:23,685 creating build/lib/singlem/biolib_lite 2024-07-18T03:16:23,686 copying singlem/biolib_lite/custom_help_formatter.py -> build/lib/singlem/biolib_lite 2024-07-18T03:16:23,688 copying singlem/biolib_lite/exceptions.py -> build/lib/singlem/biolib_lite 2024-07-18T03:16:23,690 copying singlem/biolib_lite/taxonomy.py -> build/lib/singlem/biolib_lite 2024-07-18T03:16:23,692 copying singlem/biolib_lite/execute.py -> build/lib/singlem/biolib_lite 2024-07-18T03:16:23,694 copying singlem/biolib_lite/prodigal_biolib.py -> build/lib/singlem/biolib_lite 2024-07-18T03:16:23,696 copying singlem/biolib_lite/__init__.py -> build/lib/singlem/biolib_lite 2024-07-18T03:16:23,697 copying singlem/biolib_lite/newick.py -> build/lib/singlem/biolib_lite 2024-07-18T03:16:23,699 copying singlem/biolib_lite/parallel.py -> build/lib/singlem/biolib_lite 2024-07-18T03:16:23,701 copying singlem/biolib_lite/logger.py -> build/lib/singlem/biolib_lite 2024-07-18T03:16:23,703 copying singlem/biolib_lite/seq_io.py -> build/lib/singlem/biolib_lite 2024-07-18T03:16:23,705 copying singlem/biolib_lite/common.py -> build/lib/singlem/biolib_lite 2024-07-18T03:16:23,707 running egg_info 2024-07-18T03:16:23,768 writing singlem.egg-info/PKG-INFO 2024-07-18T03:16:23,771 writing dependency_links to singlem.egg-info/dependency_links.txt 2024-07-18T03:16:23,772 writing entry points to singlem.egg-info/entry_points.txt 2024-07-18T03:16:23,778 writing requirements to singlem.egg-info/requires.txt 2024-07-18T03:16:23,780 writing top-level names to singlem.egg-info/top_level.txt 2024-07-18T03:16:23,810 reading manifest file 'singlem.egg-info/SOURCES.txt' 2024-07-18T03:16:23,813 reading manifest template 'MANIFEST.in' 2024-07-18T03:16:23,814 warning: no files found matching 'LICENSE' 2024-07-18T03:16:23,815 warning: no previously-included files matching '*' found under directory 'test' 2024-07-18T03:16:23,816 adding license file 'LICENCE.txt' 2024-07-18T03:16:23,819 writing manifest file 'singlem.egg-info/SOURCES.txt' 2024-07-18T03:16:23,849 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-07-18T03:16:23,850 !! 2024-07-18T03:16:23,851 ******************************************************************************** 2024-07-18T03:16:23,851 Please avoid running ``setup.py`` directly. 2024-07-18T03:16:23,852 Instead, use pypa/build, pypa/installer or other 2024-07-18T03:16:23,853 standards-based tools. 2024-07-18T03:16:23,854 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-07-18T03:16:23,854 ******************************************************************************** 2024-07-18T03:16:23,855 !! 2024-07-18T03:16:23,856 self.initialize_options() 2024-07-18T03:16:23,875 installing to build/bdist.linux-armv7l/wheel 2024-07-18T03:16:23,875 running install 2024-07-18T03:16:23,899 running install_lib 2024-07-18T03:16:23,924 creating build/bdist.linux-armv7l 2024-07-18T03:16:23,925 creating build/bdist.linux-armv7l/wheel 2024-07-18T03:16:23,927 creating build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,928 copying build/lib/singlem/renew.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,931 copying build/lib/singlem/singlem_database_models.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,933 copying build/lib/singlem/summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,936 copying build/lib/singlem/taxonomy_bihash.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,938 copying build/lib/singlem/chainsaw.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,940 copying build/lib/singlem/metapackage.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,942 copying build/lib/singlem/metagenome_otu_finder.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,945 copying build/lib/singlem/querier.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,948 copying build/lib/singlem/query_formatters.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,950 copying build/lib/singlem/utils.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,951 copying build/lib/singlem/metapackage_read_name_store.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,953 copying build/lib/singlem/condense.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,956 copying build/lib/singlem/checkm2.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,958 copying build/lib/singlem/otu_table_entry.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,960 copying build/lib/singlem/supplement.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,962 copying build/lib/singlem/otu_table_collection.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,965 copying build/lib/singlem/appraiser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,967 copying build/lib/singlem/archive_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,970 copying build/lib/singlem/streaming_hmm_search_result.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,971 copying build/lib/singlem/regenerator.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,974 copying build/lib/singlem/diamond_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,976 copying build/lib/singlem/main.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,980 copying build/lib/singlem/pipe.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,983 copying build/lib/singlem/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,984 copying build/lib/singlem/sequence_database.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:23,988 creating build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-18T03:16:23,989 copying build/lib/singlem/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-18T03:16:23,991 copying build/lib/singlem/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-18T03:16:23,993 copying build/lib/singlem/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-18T03:16:23,996 copying build/lib/singlem/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-18T03:16:23,998 copying build/lib/singlem/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-18T03:16:24,000 copying build/lib/singlem/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-18T03:16:24,002 copying build/lib/singlem/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-18T03:16:24,004 copying build/lib/singlem/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-18T03:16:24,007 copying build/lib/singlem/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-18T03:16:24,009 copying build/lib/singlem/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-18T03:16:24,011 copying build/lib/singlem/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-07-18T03:16:24,014 copying build/lib/singlem/strain_summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,016 copying build/lib/singlem/sequence_classes.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,018 copying build/lib/singlem/graftm_result.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,020 copying build/lib/singlem/kingfisher_sra.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,022 copying build/lib/singlem/hmm_logo.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,023 copying build/lib/singlem/sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,025 copying build/lib/singlem/orf_length_checker.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,027 copying build/lib/singlem/__init__.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,028 copying build/lib/singlem/dereplicator.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,030 copying build/lib/singlem/clusterer.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,032 copying build/lib/singlem/genome_fasta_mux.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,033 copying build/lib/singlem/otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,036 copying build/lib/singlem/placement_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,038 copying build/lib/singlem/pipe_taxonomy_assigner_by_query.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,040 copying build/lib/singlem/known_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,042 copying build/lib/singlem/appraisal_result.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,044 copying build/lib/singlem/singlem_package.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,047 copying build/lib/singlem/trim_package_hmms.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,049 copying build/lib/singlem/run_via_os_system.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,051 copying build/lib/singlem/rarefier.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,052 copying build/lib/singlem/read_fraction.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,054 copying build/lib/singlem/ordered_set.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,056 copying build/lib/singlem/genome_size.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,058 copying build/lib/singlem/package_creator.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,060 copying build/lib/singlem/pipe_sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,063 copying build/lib/singlem/version.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,064 copying build/lib/singlem/diamond_spkg_searcher.py -> build/bdist.linux-armv7l/wheel/singlem 2024-07-18T03:16:24,067 running install_data 2024-07-18T03:16:24,092 creating build/bdist.linux-armv7l/wheel/singlem-0.18.2.data 2024-07-18T03:16:24,092 creating build/bdist.linux-armv7l/wheel/singlem-0.18.2.data/data 2024-07-18T03:16:24,094 copying README.md -> build/bdist.linux-armv7l/wheel/singlem-0.18.2.data/data/. 2024-07-18T03:16:24,096 copying LICENCE.txt -> build/bdist.linux-armv7l/wheel/singlem-0.18.2.data/data/. 2024-07-18T03:16:24,098 running install_egg_info 2024-07-18T03:16:24,130 Copying singlem.egg-info to build/bdist.linux-armv7l/wheel/singlem-0.18.2-py3.11.egg-info 2024-07-18T03:16:24,141 running install_scripts 2024-07-18T03:16:24,160 creating build/bdist.linux-armv7l/wheel/singlem-0.18.2.dist-info/WHEEL 2024-07-18T03:16:24,163 creating '/tmp/pip-wheel-r53i9dhe/singlem-0.18.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-18T03:16:24,166 adding 'singlem/__init__.py' 2024-07-18T03:16:24,169 adding 'singlem/appraisal_result.py' 2024-07-18T03:16:24,172 adding 'singlem/appraiser.py' 2024-07-18T03:16:24,173 adding 'singlem/archive_otu_table.py' 2024-07-18T03:16:24,175 adding 'singlem/chainsaw.py' 2024-07-18T03:16:24,177 adding 'singlem/checkm2.py' 2024-07-18T03:16:24,179 adding 'singlem/clusterer.py' 2024-07-18T03:16:24,185 adding 'singlem/condense.py' 2024-07-18T03:16:24,186 adding 'singlem/dereplicator.py' 2024-07-18T03:16:24,187 adding 'singlem/diamond_parser.py' 2024-07-18T03:16:24,189 adding 'singlem/diamond_spkg_searcher.py' 2024-07-18T03:16:24,190 adding 'singlem/genome_fasta_mux.py' 2024-07-18T03:16:24,191 adding 'singlem/genome_size.py' 2024-07-18T03:16:24,192 adding 'singlem/graftm_result.py' 2024-07-18T03:16:24,194 adding 'singlem/hmm_logo.py' 2024-07-18T03:16:24,195 adding 'singlem/kingfisher_sra.py' 2024-07-18T03:16:24,196 adding 'singlem/known_otu_table.py' 2024-07-18T03:16:24,207 adding 'singlem/main.py' 2024-07-18T03:16:24,210 adding 'singlem/metagenome_otu_finder.py' 2024-07-18T03:16:24,213 adding 'singlem/metapackage.py' 2024-07-18T03:16:24,215 adding 'singlem/metapackage_read_name_store.py' 2024-07-18T03:16:24,216 adding 'singlem/ordered_set.py' 2024-07-18T03:16:24,217 adding 'singlem/orf_length_checker.py' 2024-07-18T03:16:24,219 adding 'singlem/otu_table.py' 2024-07-18T03:16:24,221 adding 'singlem/otu_table_collection.py' 2024-07-18T03:16:24,222 adding 'singlem/otu_table_entry.py' 2024-07-18T03:16:24,224 adding 'singlem/package_creator.py' 2024-07-18T03:16:24,233 adding 'singlem/pipe.py' 2024-07-18T03:16:24,238 adding 'singlem/pipe_sequence_extractor.py' 2024-07-18T03:16:24,240 adding 'singlem/pipe_taxonomy_assigner_by_query.py' 2024-07-18T03:16:24,242 adding 'singlem/placement_parser.py' 2024-07-18T03:16:24,246 adding 'singlem/querier.py' 2024-07-18T03:16:24,248 adding 'singlem/query_formatters.py' 2024-07-18T03:16:24,249 adding 'singlem/rarefier.py' 2024-07-18T03:16:24,251 adding 'singlem/read_fraction.py' 2024-07-18T03:16:24,253 adding 'singlem/regenerator.py' 2024-07-18T03:16:24,255 adding 'singlem/renew.py' 2024-07-18T03:16:24,256 adding 'singlem/run_via_os_system.py' 2024-07-18T03:16:24,258 adding 'singlem/sequence_classes.py' 2024-07-18T03:16:24,262 adding 'singlem/sequence_database.py' 2024-07-18T03:16:24,264 adding 'singlem/sequence_extractor.py' 2024-07-18T03:16:24,266 adding 'singlem/singlem_database_models.py' 2024-07-18T03:16:24,268 adding 'singlem/singlem_package.py' 2024-07-18T03:16:24,269 adding 'singlem/strain_summariser.py' 2024-07-18T03:16:24,271 adding 'singlem/streaming_hmm_search_result.py' 2024-07-18T03:16:24,274 adding 'singlem/summariser.py' 2024-07-18T03:16:24,280 adding 'singlem/supplement.py' 2024-07-18T03:16:24,281 adding 'singlem/taxonomy.py' 2024-07-18T03:16:24,282 adding 'singlem/taxonomy_bihash.py' 2024-07-18T03:16:24,284 adding 'singlem/trim_package_hmms.py' 2024-07-18T03:16:24,285 adding 'singlem/utils.py' 2024-07-18T03:16:24,286 adding 'singlem/version.py' 2024-07-18T03:16:24,288 adding 'singlem/biolib_lite/__init__.py' 2024-07-18T03:16:24,290 adding 'singlem/biolib_lite/common.py' 2024-07-18T03:16:24,291 adding 'singlem/biolib_lite/custom_help_formatter.py' 2024-07-18T03:16:24,293 adding 'singlem/biolib_lite/exceptions.py' 2024-07-18T03:16:24,294 adding 'singlem/biolib_lite/execute.py' 2024-07-18T03:16:24,296 adding 'singlem/biolib_lite/logger.py' 2024-07-18T03:16:24,297 adding 'singlem/biolib_lite/newick.py' 2024-07-18T03:16:24,299 adding 'singlem/biolib_lite/parallel.py' 2024-07-18T03:16:24,301 adding 'singlem/biolib_lite/prodigal_biolib.py' 2024-07-18T03:16:24,303 adding 'singlem/biolib_lite/seq_io.py' 2024-07-18T03:16:24,307 adding 'singlem/biolib_lite/taxonomy.py' 2024-07-18T03:16:24,314 adding 'singlem-0.18.2.data/data/LICENCE.txt' 2024-07-18T03:16:24,315 adding 'singlem-0.18.2.data/data/README.md' 2024-07-18T03:16:24,322 adding 'singlem-0.18.2.dist-info/LICENCE.txt' 2024-07-18T03:16:24,324 adding 'singlem-0.18.2.dist-info/METADATA' 2024-07-18T03:16:24,325 adding 'singlem-0.18.2.dist-info/WHEEL' 2024-07-18T03:16:24,326 adding 'singlem-0.18.2.dist-info/entry_points.txt' 2024-07-18T03:16:24,327 adding 'singlem-0.18.2.dist-info/top_level.txt' 2024-07-18T03:16:24,328 adding 'singlem-0.18.2.dist-info/RECORD' 2024-07-18T03:16:24,332 removing build/bdist.linux-armv7l/wheel 2024-07-18T03:16:24,470 Building wheel for singlem (setup.py): finished with status 'done' 2024-07-18T03:16:24,474 Created wheel for singlem: filename=singlem-0.18.2-py3-none-any.whl size=219630 sha256=4b9da20cb3cf4579625a6ce463d4195bf6109091addd7ac2c4e83244c39671b2 2024-07-18T03:16:24,475 Stored in directory: /tmp/pip-ephem-wheel-cache-olhyokva/wheels/dd/ca/a7/64b28137d5ba14a27d50a7019edb740b40657134184176e9fc 2024-07-18T03:16:24,488 Successfully built singlem 2024-07-18T03:16:24,498 Removed build tracker: '/tmp/pip-build-tracker-665oa5lx'