2024-07-18T19:44:31,514 Created temporary directory: /tmp/pip-build-tracker-4tgqr3jv 2024-07-18T19:44:31,515 Initialized build tracking at /tmp/pip-build-tracker-4tgqr3jv 2024-07-18T19:44:31,516 Created build tracker: /tmp/pip-build-tracker-4tgqr3jv 2024-07-18T19:44:31,516 Entered build tracker: /tmp/pip-build-tracker-4tgqr3jv 2024-07-18T19:44:31,517 Created temporary directory: /tmp/pip-wheel-byo0q38d 2024-07-18T19:44:31,520 Created temporary directory: /tmp/pip-ephem-wheel-cache-wtnrzvk3 2024-07-18T19:44:31,542 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-18T19:44:31,546 2 location(s) to search for versions of gbigsmiles: 2024-07-18T19:44:31,546 * https://pypi.org/simple/gbigsmiles/ 2024-07-18T19:44:31,546 * https://www.piwheels.org/simple/gbigsmiles/ 2024-07-18T19:44:31,547 Fetching project page and analyzing links: https://pypi.org/simple/gbigsmiles/ 2024-07-18T19:44:31,547 Getting page https://pypi.org/simple/gbigsmiles/ 2024-07-18T19:44:31,549 Found index url https://pypi.org/simple/ 2024-07-18T19:44:31,766 Fetched page https://pypi.org/simple/gbigsmiles/ as application/vnd.pypi.simple.v1+json 2024-07-18T19:44:31,768 Skipping link: No binaries permitted for gbigsmiles: https://files.pythonhosted.org/packages/bc/4b/ab439a39ec4463c029bf0696dd44e674bb446e6feb76286438af9caf74ee/gbigsmiles-0.2.0-py3-none-any.whl (from https://pypi.org/simple/gbigsmiles/) (requires-python:>=3.11) 2024-07-18T19:44:31,769 Found link https://files.pythonhosted.org/packages/c0/a3/28feab908c58604b14b52438b6c1eb5458836d6141b91d3e15dde87379be/gbigsmiles-0.2.0.tar.gz (from https://pypi.org/simple/gbigsmiles/) (requires-python:>=3.11), version: 0.2.0 2024-07-18T19:44:31,769 Skipping link: No binaries permitted for gbigsmiles: https://files.pythonhosted.org/packages/1b/ff/e89f50e85b9901a8be47d45fe10d130df6d5dfe5dd8c36b1057feb543a03/gbigsmiles-0.2.1-py3-none-any.whl (from https://pypi.org/simple/gbigsmiles/) (requires-python:>=3.9) 2024-07-18T19:44:31,770 Found link https://files.pythonhosted.org/packages/71/c6/8e4b1e4e45c36d3f211838bb0635d820aab7db48bd656ac13047fd0c1582/gbigsmiles-0.2.1.tar.gz (from https://pypi.org/simple/gbigsmiles/) (requires-python:>=3.9), version: 0.2.1 2024-07-18T19:44:31,771 Fetching project page and analyzing links: https://www.piwheels.org/simple/gbigsmiles/ 2024-07-18T19:44:31,772 Getting page https://www.piwheels.org/simple/gbigsmiles/ 2024-07-18T19:44:31,774 Found index url https://www.piwheels.org/simple/ 2024-07-18T19:44:31,943 Fetched page https://www.piwheels.org/simple/gbigsmiles/ as text/html 2024-07-18T19:44:31,945 Skipping link: No binaries permitted for gbigsmiles: https://www.piwheels.org/simple/gbigsmiles/gbigsmiles-0.2.0-py3-none-any.whl#sha256=1b09002e47b0508eb0fd651092c2b1d4ff2339d69ee59de8c8d05033fb509676 (from https://www.piwheels.org/simple/gbigsmiles/) (requires-python:>=3.11) 2024-07-18T19:44:31,946 Skipping link: not a file: https://www.piwheels.org/simple/gbigsmiles/ 2024-07-18T19:44:31,946 Skipping link: not a file: https://pypi.org/simple/gbigsmiles/ 2024-07-18T19:44:31,966 Given no hashes to check 1 links for project 'gbigsmiles': discarding no candidates 2024-07-18T19:44:31,985 Collecting gbigsmiles==0.2.1 2024-07-18T19:44:31,988 Created temporary directory: /tmp/pip-unpack-nrs3io_4 2024-07-18T19:44:32,200 Downloading gbigsmiles-0.2.1.tar.gz (578 kB) 2024-07-18T19:44:32,505 Added gbigsmiles==0.2.1 from https://files.pythonhosted.org/packages/71/c6/8e4b1e4e45c36d3f211838bb0635d820aab7db48bd656ac13047fd0c1582/gbigsmiles-0.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-4tgqr3jv' 2024-07-18T19:44:32,511 Created temporary directory: /tmp/pip-build-env-9fbv7z7i 2024-07-18T19:44:32,516 Installing build dependencies: started 2024-07-18T19:44:32,517 Running command pip subprocess to install build dependencies 2024-07-18T19:44:33,710 Using pip 24.0 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-07-18T19:44:34,264 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-18T19:44:35,759 Collecting setuptools>=43 2024-07-18T19:44:35,774 Using cached https://www.piwheels.org/simple/setuptools/setuptools-71.0.3-py3-none-any.whl (2.3 MB) 2024-07-18T19:44:36,052 Collecting wheel 2024-07-18T19:44:36,067 Using cached https://www.piwheels.org/simple/wheel/wheel-0.43.0-py3-none-any.whl (65 kB) 2024-07-18T19:44:36,390 Collecting setuptools-scm 2024-07-18T19:44:36,403 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB) 2024-07-18T19:44:36,774 Collecting packaging>=20 (from setuptools-scm) 2024-07-18T19:44:36,789 Using cached https://www.piwheels.org/simple/packaging/packaging-24.1-py3-none-any.whl (53 kB) 2024-07-18T19:44:39,415 Installing collected packages: wheel, setuptools, packaging, setuptools-scm 2024-07-18T19:44:39,655 Creating /tmp/pip-build-env-9fbv7z7i/overlay/local/bin 2024-07-18T19:44:39,658 changing mode of /tmp/pip-build-env-9fbv7z7i/overlay/local/bin/wheel to 755 2024-07-18T19:44:44,222 Successfully installed packaging-24.1 setuptools-71.0.3 setuptools-scm-8.1.0 wheel-0.43.0 2024-07-18T19:44:44,533 [notice] A new release of pip is available: 24.0 -> 24.1.2 2024-07-18T19:44:44,534 [notice] To update, run: python3 -m pip install --upgrade pip 2024-07-18T19:44:44,820 Installing build dependencies: finished with status 'done' 2024-07-18T19:44:44,824 Getting requirements to build wheel: started 2024-07-18T19:44:44,825 Running command Getting requirements to build wheel 2024-07-18T19:44:45,496 No `packages` or `py_modules` configuration, performing automatic discovery. 2024-07-18T19:44:45,496 `src-layout` detected -- analysing ./src 2024-07-18T19:44:45,499 discovered packages -- ['gbigsmiles', 'gbigsmiles.data'] 2024-07-18T19:44:45,500 discovered py_modules -- [] 2024-07-18T19:44:45,749 running egg_info 2024-07-18T19:44:45,757 writing src/gbigsmiles.egg-info/PKG-INFO 2024-07-18T19:44:45,761 writing dependency_links to src/gbigsmiles.egg-info/dependency_links.txt 2024-07-18T19:44:45,763 writing requirements to src/gbigsmiles.egg-info/requires.txt 2024-07-18T19:44:45,765 writing top-level names to src/gbigsmiles.egg-info/top_level.txt 2024-07-18T19:44:45,818 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-07-18T19:44:45,822 reading manifest file 'src/gbigsmiles.egg-info/SOURCES.txt' 2024-07-18T19:44:45,826 adding license file 'LICENSE' 2024-07-18T19:44:45,830 writing manifest file 'src/gbigsmiles.egg-info/SOURCES.txt' 2024-07-18T19:44:45,949 Getting requirements to build wheel: finished with status 'done' 2024-07-18T19:44:45,953 Created temporary directory: /tmp/pip-modern-metadata-wh_asfh9 2024-07-18T19:44:45,955 Preparing metadata (pyproject.toml): started 2024-07-18T19:44:45,957 Running command Preparing metadata (pyproject.toml) 2024-07-18T19:44:46,571 No `packages` or `py_modules` configuration, performing automatic discovery. 2024-07-18T19:44:46,572 `src-layout` detected -- analysing ./src 2024-07-18T19:44:46,574 discovered packages -- ['gbigsmiles', 'gbigsmiles.data'] 2024-07-18T19:44:46,575 discovered py_modules -- [] 2024-07-18T19:44:46,803 running dist_info 2024-07-18T19:44:46,812 creating /tmp/pip-modern-metadata-wh_asfh9/gbigsmiles.egg-info 2024-07-18T19:44:46,819 writing /tmp/pip-modern-metadata-wh_asfh9/gbigsmiles.egg-info/PKG-INFO 2024-07-18T19:44:46,823 writing dependency_links to /tmp/pip-modern-metadata-wh_asfh9/gbigsmiles.egg-info/dependency_links.txt 2024-07-18T19:44:46,825 writing requirements to /tmp/pip-modern-metadata-wh_asfh9/gbigsmiles.egg-info/requires.txt 2024-07-18T19:44:46,826 writing top-level names to /tmp/pip-modern-metadata-wh_asfh9/gbigsmiles.egg-info/top_level.txt 2024-07-18T19:44:46,827 writing manifest file '/tmp/pip-modern-metadata-wh_asfh9/gbigsmiles.egg-info/SOURCES.txt' 2024-07-18T19:44:46,874 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-07-18T19:44:46,877 reading manifest file '/tmp/pip-modern-metadata-wh_asfh9/gbigsmiles.egg-info/SOURCES.txt' 2024-07-18T19:44:46,879 adding license file 'LICENSE' 2024-07-18T19:44:46,882 writing manifest file '/tmp/pip-modern-metadata-wh_asfh9/gbigsmiles.egg-info/SOURCES.txt' 2024-07-18T19:44:46,883 creating '/tmp/pip-modern-metadata-wh_asfh9/gbigsmiles-0.2.1.dist-info' 2024-07-18T19:44:47,032 Preparing metadata (pyproject.toml): finished with status 'done' 2024-07-18T19:44:47,037 Source in /tmp/pip-wheel-byo0q38d/gbigsmiles_6d37e475e4d44b018fb0d60b8229c3e2 has version 0.2.1, which satisfies requirement gbigsmiles==0.2.1 from https://files.pythonhosted.org/packages/71/c6/8e4b1e4e45c36d3f211838bb0635d820aab7db48bd656ac13047fd0c1582/gbigsmiles-0.2.1.tar.gz 2024-07-18T19:44:47,038 Removed gbigsmiles==0.2.1 from https://files.pythonhosted.org/packages/71/c6/8e4b1e4e45c36d3f211838bb0635d820aab7db48bd656ac13047fd0c1582/gbigsmiles-0.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-4tgqr3jv' 2024-07-18T19:44:47,044 Created temporary directory: /tmp/pip-unpack-69gnzgov 2024-07-18T19:44:47,045 Created temporary directory: /tmp/pip-unpack-yosp0x71 2024-07-18T19:44:47,054 Building wheels for collected packages: gbigsmiles 2024-07-18T19:44:47,059 Created temporary directory: /tmp/pip-wheel-j9e6cy2f 2024-07-18T19:44:47,059 Destination directory: /tmp/pip-wheel-j9e6cy2f 2024-07-18T19:44:47,061 Building wheel for gbigsmiles (pyproject.toml): started 2024-07-18T19:44:47,063 Running command Building wheel for gbigsmiles (pyproject.toml) 2024-07-18T19:44:47,662 No `packages` or `py_modules` configuration, performing automatic discovery. 2024-07-18T19:44:47,662 `src-layout` detected -- analysing ./src 2024-07-18T19:44:47,665 discovered packages -- ['gbigsmiles', 'gbigsmiles.data'] 2024-07-18T19:44:47,665 discovered py_modules -- [] 2024-07-18T19:44:47,879 running bdist_wheel 2024-07-18T19:44:47,912 running build 2024-07-18T19:44:47,913 running build_py 2024-07-18T19:44:47,921 creating build 2024-07-18T19:44:47,922 creating build/lib 2024-07-18T19:44:47,923 creating build/lib/gbigsmiles 2024-07-18T19:44:47,924 copying src/gbigsmiles/token.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,926 copying src/gbigsmiles/_version.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,928 copying src/gbigsmiles/chem_resource.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,930 copying src/gbigsmiles/graph_generate.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,933 copying src/gbigsmiles/stochastic_atom_graph.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,935 copying src/gbigsmiles/molecule.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,938 copying src/gbigsmiles/stochastic.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,940 copying src/gbigsmiles/mixture.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,942 copying src/gbigsmiles/mol_prob.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,945 copying src/gbigsmiles/forcefield_helper.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,947 copying src/gbigsmiles/system.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,949 copying src/gbigsmiles/__init__.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,951 copying src/gbigsmiles/bond.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,953 copying src/gbigsmiles/distribution.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,956 copying src/gbigsmiles/atom.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,957 copying src/gbigsmiles/mol_gen.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,960 copying src/gbigsmiles/__main__.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,961 copying src/gbigsmiles/core.py -> build/lib/gbigsmiles 2024-07-18T19:44:47,964 running egg_info 2024-07-18T19:44:47,971 writing src/gbigsmiles.egg-info/PKG-INFO 2024-07-18T19:44:47,974 writing dependency_links to src/gbigsmiles.egg-info/dependency_links.txt 2024-07-18T19:44:47,976 writing requirements to src/gbigsmiles.egg-info/requires.txt 2024-07-18T19:44:47,977 writing top-level names to src/gbigsmiles.egg-info/top_level.txt 2024-07-18T19:44:48,012 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-07-18T19:44:48,015 reading manifest file 'src/gbigsmiles.egg-info/SOURCES.txt' 2024-07-18T19:44:48,018 adding license file 'LICENSE' 2024-07-18T19:44:48,021 writing manifest file 'src/gbigsmiles.egg-info/SOURCES.txt' 2024-07-18T19:44:48,025 copying src/gbigsmiles/.gitignore -> build/lib/gbigsmiles 2024-07-18T19:44:48,027 creating build/lib/gbigsmiles/data 2024-07-18T19:44:48,028 copying src/gbigsmiles/data/ffbonded.itp -> build/lib/gbigsmiles/data 2024-07-18T19:44:48,035 copying src/gbigsmiles/data/ffnonbonded.itp -> build/lib/gbigsmiles/data 2024-07-18T19:44:48,039 copying src/gbigsmiles/data/opls.par -> build/lib/gbigsmiles/data 2024-07-18T19:44:48,058 installing to build/bdist.linux-armv7l/wheel 2024-07-18T19:44:48,059 running install 2024-07-18T19:44:48,083 running install_lib 2024-07-18T19:44:48,091 creating build/bdist.linux-armv7l 2024-07-18T19:44:48,092 creating build/bdist.linux-armv7l/wheel 2024-07-18T19:44:48,094 creating build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,095 copying build/lib/gbigsmiles/token.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,097 copying build/lib/gbigsmiles/.gitignore -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,099 copying build/lib/gbigsmiles/_version.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,102 creating build/bdist.linux-armv7l/wheel/gbigsmiles/data 2024-07-18T19:44:48,103 copying build/lib/gbigsmiles/data/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/gbigsmiles/data 2024-07-18T19:44:48,106 copying build/lib/gbigsmiles/data/ffbonded.itp -> build/bdist.linux-armv7l/wheel/gbigsmiles/data 2024-07-18T19:44:48,113 copying build/lib/gbigsmiles/data/opls.par -> build/bdist.linux-armv7l/wheel/gbigsmiles/data 2024-07-18T19:44:48,116 copying build/lib/gbigsmiles/chem_resource.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,119 copying build/lib/gbigsmiles/graph_generate.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,121 copying build/lib/gbigsmiles/stochastic_atom_graph.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,124 copying build/lib/gbigsmiles/molecule.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,126 copying build/lib/gbigsmiles/stochastic.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,129 copying build/lib/gbigsmiles/mixture.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,130 copying build/lib/gbigsmiles/mol_prob.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,133 copying build/lib/gbigsmiles/forcefield_helper.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,135 copying build/lib/gbigsmiles/system.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,138 copying build/lib/gbigsmiles/__init__.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,140 copying build/lib/gbigsmiles/bond.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,142 copying build/lib/gbigsmiles/distribution.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,145 copying build/lib/gbigsmiles/atom.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,147 copying build/lib/gbigsmiles/mol_gen.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,149 copying build/lib/gbigsmiles/__main__.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,151 copying build/lib/gbigsmiles/core.py -> build/bdist.linux-armv7l/wheel/gbigsmiles 2024-07-18T19:44:48,153 running install_egg_info 2024-07-18T19:44:48,161 Copying src/gbigsmiles.egg-info to build/bdist.linux-armv7l/wheel/gbigsmiles-0.2.1-py3.11.egg-info 2024-07-18T19:44:48,172 running install_scripts 2024-07-18T19:44:48,189 creating build/bdist.linux-armv7l/wheel/gbigsmiles-0.2.1.dist-info/WHEEL 2024-07-18T19:44:48,192 creating '/tmp/pip-wheel-j9e6cy2f/.tmp-zffk3hxq/gbigsmiles-0.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-18T19:44:48,195 adding 'gbigsmiles/.gitignore' 2024-07-18T19:44:48,196 adding 'gbigsmiles/__init__.py' 2024-07-18T19:44:48,198 adding 'gbigsmiles/__main__.py' 2024-07-18T19:44:48,199 adding 'gbigsmiles/_version.py' 2024-07-18T19:44:48,201 adding 'gbigsmiles/atom.py' 2024-07-18T19:44:48,203 adding 'gbigsmiles/bond.py' 2024-07-18T19:44:48,205 adding 'gbigsmiles/chem_resource.py' 2024-07-18T19:44:48,206 adding 'gbigsmiles/core.py' 2024-07-18T19:44:48,208 adding 'gbigsmiles/distribution.py' 2024-07-18T19:44:48,210 adding 'gbigsmiles/forcefield_helper.py' 2024-07-18T19:44:48,212 adding 'gbigsmiles/graph_generate.py' 2024-07-18T19:44:48,214 adding 'gbigsmiles/mixture.py' 2024-07-18T19:44:48,215 adding 'gbigsmiles/mol_gen.py' 2024-07-18T19:44:48,218 adding 'gbigsmiles/mol_prob.py' 2024-07-18T19:44:48,220 adding 'gbigsmiles/molecule.py' 2024-07-18T19:44:48,222 adding 'gbigsmiles/stochastic.py' 2024-07-18T19:44:48,224 adding 'gbigsmiles/stochastic_atom_graph.py' 2024-07-18T19:44:48,226 adding 'gbigsmiles/system.py' 2024-07-18T19:44:48,228 adding 'gbigsmiles/token.py' 2024-07-18T19:44:48,247 adding 'gbigsmiles/data/ffbonded.itp' 2024-07-18T19:44:48,255 adding 'gbigsmiles/data/ffnonbonded.itp' 2024-07-18T19:44:48,260 adding 'gbigsmiles/data/opls.par' 2024-07-18T19:44:48,267 adding 'gbigsmiles-0.2.1.dist-info/LICENSE' 2024-07-18T19:44:48,270 adding 'gbigsmiles-0.2.1.dist-info/METADATA' 2024-07-18T19:44:48,271 adding 'gbigsmiles-0.2.1.dist-info/WHEEL' 2024-07-18T19:44:48,272 adding 'gbigsmiles-0.2.1.dist-info/top_level.txt' 2024-07-18T19:44:48,273 adding 'gbigsmiles-0.2.1.dist-info/RECORD' 2024-07-18T19:44:48,276 removing build/bdist.linux-armv7l/wheel 2024-07-18T19:44:48,404 Building wheel for gbigsmiles (pyproject.toml): finished with status 'done' 2024-07-18T19:44:48,411 Created wheel for gbigsmiles: filename=gbigsmiles-0.2.1-py3-none-any.whl size=98905 sha256=1966f99f45e96e3cac562f40852ef048e48d5e67c8ac5fb4c45e7f013021f313 2024-07-18T19:44:48,412 Stored in directory: /tmp/pip-ephem-wheel-cache-wtnrzvk3/wheels/ee/7d/9d/cb04a4a962982049bac80e938ac7d5da9163d3bbcf468d0a3d 2024-07-18T19:44:48,425 Successfully built gbigsmiles 2024-07-18T19:44:48,431 Removed build tracker: '/tmp/pip-build-tracker-4tgqr3jv'