2024-07-19T09:05:27,857 Created temporary directory: /tmp/pip-build-tracker-g_3704j7 2024-07-19T09:05:27,859 Initialized build tracking at /tmp/pip-build-tracker-g_3704j7 2024-07-19T09:05:27,859 Created build tracker: /tmp/pip-build-tracker-g_3704j7 2024-07-19T09:05:27,859 Entered build tracker: /tmp/pip-build-tracker-g_3704j7 2024-07-19T09:05:27,860 Created temporary directory: /tmp/pip-wheel-wz3u45y9 2024-07-19T09:05:27,864 Created temporary directory: /tmp/pip-ephem-wheel-cache-kp8ukopv 2024-07-19T09:05:27,889 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-19T09:05:27,892 2 location(s) to search for versions of pinder: 2024-07-19T09:05:27,892 * https://pypi.org/simple/pinder/ 2024-07-19T09:05:27,892 * https://www.piwheels.org/simple/pinder/ 2024-07-19T09:05:27,893 Fetching project page and analyzing links: https://pypi.org/simple/pinder/ 2024-07-19T09:05:27,894 Getting page https://pypi.org/simple/pinder/ 2024-07-19T09:05:27,895 Found index url https://pypi.org/simple/ 2024-07-19T09:05:27,945 Fetched page https://pypi.org/simple/pinder/ as application/vnd.pypi.simple.v1+json 2024-07-19T09:05:27,946 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/cd/e5/a5976b9e493a4eef6196cdb33a92dc132b838830f9874b88d6bd591f55d0/pinder-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2024-07-19T09:05:27,947 Found link https://files.pythonhosted.org/packages/d3/6f/77f4349b73c26cff13e2a6e2f0712ae1b388424418f6df8980e4c055d628/pinder-0.0.1.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.0.1 2024-07-19T09:05:27,947 Fetching project page and analyzing links: https://www.piwheels.org/simple/pinder/ 2024-07-19T09:05:27,948 Getting page https://www.piwheels.org/simple/pinder/ 2024-07-19T09:05:27,949 Found index url https://www.piwheels.org/simple/ 2024-07-19T09:05:28,042 Fetched page https://www.piwheels.org/simple/pinder/ as text/html 2024-07-19T09:05:28,043 Skipping link: not a file: https://www.piwheels.org/simple/pinder/ 2024-07-19T09:05:28,043 Skipping link: not a file: https://pypi.org/simple/pinder/ 2024-07-19T09:05:28,060 Given no hashes to check 1 links for project 'pinder': discarding no candidates 2024-07-19T09:05:28,077 Collecting pinder==0.0.1 2024-07-19T09:05:28,079 Created temporary directory: /tmp/pip-unpack-yr_2s1dk 2024-07-19T09:05:28,122 Downloading pinder-0.0.1.tar.gz (23.2 MB) 2024-07-19T09:05:33,462 Added pinder==0.0.1 from https://files.pythonhosted.org/packages/d3/6f/77f4349b73c26cff13e2a6e2f0712ae1b388424418f6df8980e4c055d628/pinder-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-g_3704j7' 2024-07-19T09:05:33,471 Created temporary directory: /tmp/pip-build-env-2carw3l0 2024-07-19T09:05:33,480 Installing build dependencies: started 2024-07-19T09:05:33,481 Running command pip subprocess to install build dependencies 2024-07-19T09:05:34,631 Using pip 24.0 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2024-07-19T09:05:35,149 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-19T09:05:35,416 Collecting build==0.10.0 2024-07-19T09:05:35,440 Using cached https://www.piwheels.org/simple/build/build-0.10.0-py3-none-any.whl (17 kB) 2024-07-19T09:05:36,764 Collecting setuptools>=65.4.0 2024-07-19T09:05:36,779 Using cached https://www.piwheels.org/simple/setuptools/setuptools-71.0.3-py3-none-any.whl (2.3 MB) 2024-07-19T09:05:37,163 Collecting setuptools_scm>=7.1.0 (from setuptools_scm[toml]>=7.1.0) 2024-07-19T09:05:37,181 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.1.0-py3-none-any.whl (43 kB) 2024-07-19T09:05:37,444 Collecting packaging>=19.0 (from build==0.10.0) 2024-07-19T09:05:37,461 Using cached https://www.piwheels.org/simple/packaging/packaging-24.1-py3-none-any.whl (53 kB) 2024-07-19T09:05:37,535 Collecting pyproject_hooks (from build==0.10.0) 2024-07-19T09:05:37,557 Using cached https://www.piwheels.org/simple/pyproject-hooks/pyproject_hooks-1.1.0-py3-none-any.whl (9.2 kB) 2024-07-19T09:05:37,672 Collecting tomli>=1.1.0 (from build==0.10.0) 2024-07-19T09:05:37,688 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2024-07-19T09:05:38,101 Collecting typing-extensions (from setuptools_scm>=7.1.0->setuptools_scm[toml]>=7.1.0) 2024-07-19T09:05:38,118 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.12.2-py3-none-any.whl (37 kB) 2024-07-19T09:05:39,953 Installing collected packages: typing-extensions, tomli, setuptools, pyproject_hooks, packaging, setuptools_scm, build 2024-07-19T09:05:44,703 Creating /tmp/pip-build-env-2carw3l0/overlay/bin 2024-07-19T09:05:44,705 changing mode of /tmp/pip-build-env-2carw3l0/overlay/bin/pyproject-build to 755 2024-07-19T09:05:44,723 Successfully installed build-0.10.0 packaging-24.1 pyproject_hooks-1.1.0 setuptools-71.0.3 setuptools_scm-8.1.0 tomli-2.0.1 typing-extensions-4.12.2 2024-07-19T09:05:44,903 [notice] A new release of pip is available: 24.0 -> 24.1.2 2024-07-19T09:05:44,903 [notice] To update, run: python3 -m pip install --upgrade pip 2024-07-19T09:05:45,200 Installing build dependencies: finished with status 'done' 2024-07-19T09:05:45,205 Getting requirements to build wheel: started 2024-07-19T09:05:45,206 Running command Getting requirements to build wheel 2024-07-19T09:05:46,227 running egg_info 2024-07-19T09:05:46,237 writing pinder.egg-info/PKG-INFO 2024-07-19T09:05:46,260 writing dependency_links to pinder.egg-info/dependency_links.txt 2024-07-19T09:05:46,263 writing entry points to pinder.egg-info/entry_points.txt 2024-07-19T09:05:46,274 writing requirements to pinder.egg-info/requires.txt 2024-07-19T09:05:46,276 writing top-level names to pinder.egg-info/top_level.txt 2024-07-19T09:05:46,364 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-07-19T09:05:46,372 reading manifest file 'pinder.egg-info/SOURCES.txt' 2024-07-19T09:05:46,459 adding license file 'LICENSE' 2024-07-19T09:05:46,488 writing manifest file 'pinder.egg-info/SOURCES.txt' 2024-07-19T09:05:46,598 Getting requirements to build wheel: finished with status 'done' 2024-07-19T09:05:46,603 Created temporary directory: /tmp/pip-modern-metadata-3zo59qpr 2024-07-19T09:05:46,605 Preparing metadata (pyproject.toml): started 2024-07-19T09:05:46,606 Running command Preparing metadata (pyproject.toml) 2024-07-19T09:05:47,517 running dist_info 2024-07-19T09:05:47,526 creating /tmp/pip-modern-metadata-3zo59qpr/pinder.egg-info 2024-07-19T09:05:47,535 writing /tmp/pip-modern-metadata-3zo59qpr/pinder.egg-info/PKG-INFO 2024-07-19T09:05:47,559 writing dependency_links to /tmp/pip-modern-metadata-3zo59qpr/pinder.egg-info/dependency_links.txt 2024-07-19T09:05:47,561 writing entry points to /tmp/pip-modern-metadata-3zo59qpr/pinder.egg-info/entry_points.txt 2024-07-19T09:05:47,572 writing requirements to /tmp/pip-modern-metadata-3zo59qpr/pinder.egg-info/requires.txt 2024-07-19T09:05:47,573 writing top-level names to /tmp/pip-modern-metadata-3zo59qpr/pinder.egg-info/top_level.txt 2024-07-19T09:05:47,575 writing manifest file '/tmp/pip-modern-metadata-3zo59qpr/pinder.egg-info/SOURCES.txt' 2024-07-19T09:05:47,651 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-07-19T09:05:47,659 reading manifest file '/tmp/pip-modern-metadata-3zo59qpr/pinder.egg-info/SOURCES.txt' 2024-07-19T09:05:47,662 adding license file 'LICENSE' 2024-07-19T09:05:47,668 writing manifest file '/tmp/pip-modern-metadata-3zo59qpr/pinder.egg-info/SOURCES.txt' 2024-07-19T09:05:47,670 creating '/tmp/pip-modern-metadata-3zo59qpr/pinder-0.0.1.dist-info' 2024-07-19T09:05:47,843 Preparing metadata (pyproject.toml): finished with status 'done' 2024-07-19T09:05:47,854 Source in /tmp/pip-wheel-wz3u45y9/pinder_19e431d0a046419393188da333076b15 has version 0.0.1, which satisfies requirement pinder==0.0.1 from https://files.pythonhosted.org/packages/d3/6f/77f4349b73c26cff13e2a6e2f0712ae1b388424418f6df8980e4c055d628/pinder-0.0.1.tar.gz 2024-07-19T09:05:47,855 Removed pinder==0.0.1 from https://files.pythonhosted.org/packages/d3/6f/77f4349b73c26cff13e2a6e2f0712ae1b388424418f6df8980e4c055d628/pinder-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-g_3704j7' 2024-07-19T09:05:47,865 Created temporary directory: /tmp/pip-unpack-jvtgte_g 2024-07-19T09:05:47,866 Created temporary directory: /tmp/pip-unpack-7anlj80d 2024-07-19T09:05:48,018 Building wheels for collected packages: pinder 2024-07-19T09:05:48,023 Created temporary directory: /tmp/pip-wheel-kvq9hmmn 2024-07-19T09:05:48,023 Destination directory: /tmp/pip-wheel-kvq9hmmn 2024-07-19T09:05:48,025 Building wheel for pinder (pyproject.toml): started 2024-07-19T09:05:48,026 Running command Building wheel for pinder (pyproject.toml) 2024-07-19T09:05:48,921 running bdist_wheel 2024-07-19T09:05:48,962 running build 2024-07-19T09:05:48,962 running build_py 2024-07-19T09:05:48,972 creating build 2024-07-19T09:05:48,973 creating build/lib 2024-07-19T09:05:48,973 creating build/lib/pinder 2024-07-19T09:05:48,974 creating build/lib/pinder/core 2024-07-19T09:05:48,975 copying src/pinder-core/pinder/core/_version.py -> build/lib/pinder/core 2024-07-19T09:05:48,977 copying src/pinder-core/pinder/core/__init__.py -> build/lib/pinder/core 2024-07-19T09:05:48,979 creating build/lib/pinder/core/structure 2024-07-19T09:05:48,980 copying src/pinder-core/pinder/core/structure/models.py -> build/lib/pinder/core/structure 2024-07-19T09:05:48,982 copying src/pinder-core/pinder/core/structure/__init__.py -> build/lib/pinder/core/structure 2024-07-19T09:05:48,983 copying src/pinder-core/pinder/core/structure/surgery.py -> build/lib/pinder/core/structure 2024-07-19T09:05:48,985 copying src/pinder-core/pinder/core/structure/contacts.py -> build/lib/pinder/core/structure 2024-07-19T09:05:48,987 copying src/pinder-core/pinder/core/structure/atoms.py -> build/lib/pinder/core/structure 2024-07-19T09:05:48,990 copying src/pinder-core/pinder/core/structure/superimpose.py -> build/lib/pinder/core/structure 2024-07-19T09:05:48,992 creating build/lib/pinder/core/index 2024-07-19T09:05:48,993 copying src/pinder-core/pinder/core/index/id.py -> build/lib/pinder/core/index 2024-07-19T09:05:48,995 copying src/pinder-core/pinder/core/index/__init__.py -> build/lib/pinder/core/index 2024-07-19T09:05:48,997 copying src/pinder-core/pinder/core/index/system.py -> build/lib/pinder/core/index 2024-07-19T09:05:48,999 copying src/pinder-core/pinder/core/index/utils.py -> build/lib/pinder/core/index 2024-07-19T09:05:49,003 creating build/lib/pinder/core/utils 2024-07-19T09:05:49,004 copying src/pinder-core/pinder/core/utils/timer.py -> build/lib/pinder/core/utils 2024-07-19T09:05:49,005 copying src/pinder-core/pinder/core/utils/paths.py -> build/lib/pinder/core/utils 2024-07-19T09:05:49,007 copying src/pinder-core/pinder/core/utils/log.py -> build/lib/pinder/core/utils 2024-07-19T09:05:49,009 copying src/pinder-core/pinder/core/utils/constants.py -> build/lib/pinder/core/utils 2024-07-19T09:05:49,011 copying src/pinder-core/pinder/core/utils/cloud.py -> build/lib/pinder/core/utils 2024-07-19T09:05:49,014 copying src/pinder-core/pinder/core/utils/pdb_utils.py -> build/lib/pinder/core/utils 2024-07-19T09:05:49,016 copying src/pinder-core/pinder/core/utils/__init__.py -> build/lib/pinder/core/utils 2024-07-19T09:05:49,017 copying src/pinder-core/pinder/core/utils/string.py -> build/lib/pinder/core/utils 2024-07-19T09:05:49,019 copying src/pinder-core/pinder/core/utils/retry.py -> build/lib/pinder/core/utils 2024-07-19T09:05:49,020 copying src/pinder-core/pinder/core/utils/unbound.py -> build/lib/pinder/core/utils 2024-07-19T09:05:49,022 copying src/pinder-core/pinder/core/utils/process.py -> build/lib/pinder/core/utils 2024-07-19T09:05:49,024 copying src/pinder-core/pinder/core/utils/dataclass.py -> build/lib/pinder/core/utils 2024-07-19T09:05:49,026 creating build/lib/pinder/core/loader 2024-07-19T09:05:49,027 copying src/pinder-core/pinder/core/loader/writer.py -> build/lib/pinder/core/loader 2024-07-19T09:05:49,029 copying src/pinder-core/pinder/core/loader/geodata.py -> build/lib/pinder/core/loader 2024-07-19T09:05:49,031 copying src/pinder-core/pinder/core/loader/structure.py -> build/lib/pinder/core/loader 2024-07-19T09:05:49,033 copying src/pinder-core/pinder/core/loader/__init__.py -> build/lib/pinder/core/loader 2024-07-19T09:05:49,034 copying src/pinder-core/pinder/core/loader/filters.py -> build/lib/pinder/core/loader 2024-07-19T09:05:49,037 copying src/pinder-core/pinder/core/loader/dataset.py -> build/lib/pinder/core/loader 2024-07-19T09:05:49,039 copying src/pinder-core/pinder/core/loader/utils.py -> build/lib/pinder/core/loader 2024-07-19T09:05:49,041 copying src/pinder-core/pinder/core/loader/transforms.py -> build/lib/pinder/core/loader 2024-07-19T09:05:49,042 copying src/pinder-core/pinder/core/loader/loader.py -> build/lib/pinder/core/loader 2024-07-19T09:05:49,045 creating build/lib/pinder/core/submit 2024-07-19T09:05:49,046 copying src/pinder-core/pinder/core/submit/__init__.py -> build/lib/pinder/core/submit 2024-07-19T09:05:49,048 creating build/lib/pinder/data 2024-07-19T09:05:49,049 copying src/pinder-data/pinder/data/graph_utils.py -> build/lib/pinder/data 2024-07-19T09:05:49,051 copying src/pinder-data/pinder/data/csv_utils.py -> build/lib/pinder/data 2024-07-19T09:05:49,053 copying src/pinder-data/pinder/data/alignment_utils.py -> build/lib/pinder/data 2024-07-19T09:05:49,056 copying src/pinder-data/pinder/data/get_splits.py -> build/lib/pinder/data 2024-07-19T09:05:49,058 copying src/pinder-data/pinder/data/get_data.py -> build/lib/pinder/data 2024-07-19T09:05:49,061 copying src/pinder-data/pinder/data/get_apo.py -> build/lib/pinder/data 2024-07-19T09:05:49,063 copying src/pinder-data/pinder/data/find_transitive_hits.py -> build/lib/pinder/data 2024-07-19T09:05:49,066 copying src/pinder-data/pinder/data/get_clusters.py -> build/lib/pinder/data 2024-07-19T09:05:49,068 copying src/pinder-data/pinder/data/get_annotations.py -> build/lib/pinder/data 2024-07-19T09:05:49,070 copying src/pinder-data/pinder/data/get_test_set.py -> build/lib/pinder/data 2024-07-19T09:05:49,072 copying src/pinder-data/pinder/data/get_alignment_similarity.py -> build/lib/pinder/data 2024-07-19T09:05:49,075 copying src/pinder-data/pinder/data/foldseek_utils.py -> build/lib/pinder/data 2024-07-19T09:05:49,077 copying src/pinder-data/pinder/data/_version.py -> build/lib/pinder/data 2024-07-19T09:05:49,078 copying src/pinder-data/pinder/data/__init__.py -> build/lib/pinder/data 2024-07-19T09:05:49,080 copying src/pinder-data/pinder/data/system.py -> build/lib/pinder/data 2024-07-19T09:05:49,082 copying src/pinder-data/pinder/data/run.py -> build/lib/pinder/data 2024-07-19T09:05:49,084 copying src/pinder-data/pinder/data/apo_utils.py -> build/lib/pinder/data 2024-07-19T09:05:49,086 copying src/pinder-data/pinder/data/config.py -> build/lib/pinder/data 2024-07-19T09:05:49,088 copying src/pinder-data/pinder/data/rcsb_rsync.py -> build/lib/pinder/data 2024-07-19T09:05:49,090 copying src/pinder-data/pinder/data/get_dimers.py -> build/lib/pinder/data 2024-07-19T09:05:49,095 creating build/lib/pinder/data/plot 2024-07-19T09:05:49,095 copying src/pinder-data/pinder/data/plot/plot.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,098 copying src/pinder-data/pinder/data/plot/datasets.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,100 copying src/pinder-data/pinder/data/plot/categories.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,102 copying src/pinder-data/pinder/data/plot/constants.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,105 copying src/pinder-data/pinder/data/plot/leakage.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,107 copying src/pinder-data/pinder/data/plot/families.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,109 copying src/pinder-data/pinder/data/plot/leaderboards.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,111 copying src/pinder-data/pinder/data/plot/__init__.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,113 copying src/pinder-data/pinder/data/plot/validity.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,115 copying src/pinder-data/pinder/data/plot/structure_case_studies.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,118 copying src/pinder-data/pinder/data/plot/run.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,119 copying src/pinder-data/pinder/data/plot/image.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,121 copying src/pinder-data/pinder/data/plot/performance.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,123 copying src/pinder-data/pinder/data/plot/difficulty.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,125 copying src/pinder-data/pinder/data/plot/annotations.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,127 copying src/pinder-data/pinder/data/plot/figure_utils.py -> build/lib/pinder/data/plot 2024-07-19T09:05:49,130 creating build/lib/pinder/data/qc 2024-07-19T09:05:49,131 copying src/pinder-data/pinder/data/qc/annotation_check.py -> build/lib/pinder/data/qc 2024-07-19T09:05:49,133 copying src/pinder-data/pinder/data/qc/similarity_check.py -> build/lib/pinder/data/qc 2024-07-19T09:05:49,136 copying src/pinder-data/pinder/data/qc/ialign.py -> build/lib/pinder/data/qc 2024-07-19T09:05:49,138 copying src/pinder-data/pinder/data/qc/uniprot_leakage.py -> build/lib/pinder/data/qc 2024-07-19T09:05:49,140 copying src/pinder-data/pinder/data/qc/__init__.py -> build/lib/pinder/data/qc 2024-07-19T09:05:49,141 copying src/pinder-data/pinder/data/qc/run.py -> build/lib/pinder/data/qc 2024-07-19T09:05:49,143 copying src/pinder-data/pinder/data/qc/pfam_diversity.py -> build/lib/pinder/data/qc 2024-07-19T09:05:49,145 copying src/pinder-data/pinder/data/qc/utils.py -> build/lib/pinder/data/qc 2024-07-19T09:05:49,148 creating build/lib/pinder/data/pipeline 2024-07-19T09:05:49,149 copying src/pinder-data/pinder/data/pipeline/scatter.py -> build/lib/pinder/data/pipeline 2024-07-19T09:05:49,151 copying src/pinder-data/pinder/data/pipeline/cache.py -> build/lib/pinder/data/pipeline 2024-07-19T09:05:49,153 copying src/pinder-data/pinder/data/pipeline/constants.py -> build/lib/pinder/data/pipeline 2024-07-19T09:05:49,154 copying src/pinder-data/pinder/data/pipeline/data_pipeline.py -> build/lib/pinder/data/pipeline 2024-07-19T09:05:49,157 copying src/pinder-data/pinder/data/pipeline/__init__.py -> build/lib/pinder/data/pipeline 2024-07-19T09:05:49,158 copying src/pinder-data/pinder/data/pipeline/tasks.py -> build/lib/pinder/data/pipeline 2024-07-19T09:05:49,161 creating build/lib/pinder/data/annotation 2024-07-19T09:05:49,162 copying src/pinder-data/pinder/data/annotation/elongation.py -> build/lib/pinder/data/annotation 2024-07-19T09:05:49,164 copying src/pinder-data/pinder/data/annotation/planarity.py -> build/lib/pinder/data/annotation 2024-07-19T09:05:49,165 copying src/pinder-data/pinder/data/annotation/canonical_apo.py -> build/lib/pinder/data/annotation 2024-07-19T09:05:49,167 copying src/pinder-data/pinder/data/annotation/constants.py -> build/lib/pinder/data/annotation 2024-07-19T09:05:49,170 copying src/pinder-data/pinder/data/annotation/detached_components.py -> build/lib/pinder/data/annotation 2024-07-19T09:05:49,171 copying src/pinder-data/pinder/data/annotation/interface_gaps.py -> build/lib/pinder/data/annotation 2024-07-19T09:05:49,173 copying src/pinder-data/pinder/data/annotation/graphql.py -> build/lib/pinder/data/annotation 2024-07-19T09:05:49,175 copying src/pinder-data/pinder/data/annotation/__init__.py -> build/lib/pinder/data/annotation 2024-07-19T09:05:49,177 copying src/pinder-data/pinder/data/annotation/contact_classification.py -> build/lib/pinder/data/annotation 2024-07-19T09:05:49,179 copying src/pinder-data/pinder/data/annotation/sabdab.py -> build/lib/pinder/data/annotation 2024-07-19T09:05:49,182 creating build/lib/pinder/eval 2024-07-19T09:05:49,183 copying src/pinder-eval/pinder/eval/create_submission.py -> build/lib/pinder/eval 2024-07-19T09:05:49,184 copying src/pinder-eval/pinder/eval/_version.py -> build/lib/pinder/eval 2024-07-19T09:05:49,186 copying src/pinder-eval/pinder/eval/__init__.py -> build/lib/pinder/eval 2024-07-19T09:05:49,187 copying src/pinder-eval/pinder/eval/run.py -> build/lib/pinder/eval 2024-07-19T09:05:49,190 creating build/lib/pinder/eval/clashes 2024-07-19T09:05:49,191 copying src/pinder-eval/pinder/eval/clashes/__init__.py -> build/lib/pinder/eval/clashes 2024-07-19T09:05:49,193 creating build/lib/pinder/eval/dockq 2024-07-19T09:05:49,194 copying src/pinder-eval/pinder/eval/dockq/biotite_dockq.py -> build/lib/pinder/eval/dockq 2024-07-19T09:05:49,197 copying src/pinder-eval/pinder/eval/dockq/metrics.py -> build/lib/pinder/eval/dockq 2024-07-19T09:05:49,199 copying src/pinder-eval/pinder/eval/dockq/__init__.py -> build/lib/pinder/eval/dockq 2024-07-19T09:05:49,201 copying src/pinder-eval/pinder/eval/dockq/method.py -> build/lib/pinder/eval/dockq 2024-07-19T09:05:49,203 copying src/pinder-eval/pinder/eval/dockq/unbound.py -> build/lib/pinder/eval/dockq 2024-07-19T09:05:49,206 creating build/lib/pinder/methods 2024-07-19T09:05:49,207 copying src/pinder-methods/pinder/methods/_version.py -> build/lib/pinder/methods 2024-07-19T09:05:49,209 copying src/pinder-methods/pinder/methods/main.py -> build/lib/pinder/methods 2024-07-19T09:05:49,211 copying src/pinder-methods/pinder/methods/__init__.py -> build/lib/pinder/methods 2024-07-19T09:05:49,213 creating build/lib/pinder/methods/preprocess 2024-07-19T09:05:49,214 copying src/pinder-methods/pinder/methods/preprocess/__init__.py -> build/lib/pinder/methods/preprocess 2024-07-19T09:05:49,216 creating build/lib/pinder/methods/run 2024-07-19T09:05:49,217 copying src/pinder-methods/pinder/methods/run/__init__.py -> build/lib/pinder/methods/run 2024-07-19T09:05:49,219 creating build/lib/pinder/methods/train 2024-07-19T09:05:49,220 copying src/pinder-methods/pinder/methods/train/__init__.py -> build/lib/pinder/methods/train 2024-07-19T09:05:49,222 creating build/lib/pinder/methods/run/patchdock 2024-07-19T09:05:49,223 copying src/pinder-methods/pinder/methods/run/patchdock/__init__.py -> build/lib/pinder/methods/run/patchdock 2024-07-19T09:05:49,224 copying src/pinder-methods/pinder/methods/run/patchdock/predict.py -> build/lib/pinder/methods/run/patchdock 2024-07-19T09:05:49,227 creating build/lib/pinder/methods/run/af2mm 2024-07-19T09:05:49,228 copying src/pinder-methods/pinder/methods/run/af2mm/__init__.py -> build/lib/pinder/methods/run/af2mm 2024-07-19T09:05:49,230 creating build/lib/pinder/methods/run/frodock 2024-07-19T09:05:49,230 copying src/pinder-methods/pinder/methods/run/frodock/__init__.py -> build/lib/pinder/methods/run/frodock 2024-07-19T09:05:49,232 copying src/pinder-methods/pinder/methods/run/frodock/predict.py -> build/lib/pinder/methods/run/frodock 2024-07-19T09:05:49,235 creating build/lib/pinder/methods/run/hdock 2024-07-19T09:05:49,235 copying src/pinder-methods/pinder/methods/run/hdock/__init__.py -> build/lib/pinder/methods/run/hdock 2024-07-19T09:05:49,237 copying src/pinder-methods/pinder/methods/run/hdock/predict.py -> build/lib/pinder/methods/run/hdock 2024-07-19T09:05:49,239 running egg_info 2024-07-19T09:05:49,248 writing pinder.egg-info/PKG-INFO 2024-07-19T09:05:49,272 writing dependency_links to pinder.egg-info/dependency_links.txt 2024-07-19T09:05:49,274 writing entry points to pinder.egg-info/entry_points.txt 2024-07-19T09:05:49,285 writing requirements to pinder.egg-info/requires.txt 2024-07-19T09:05:49,286 writing top-level names to pinder.egg-info/top_level.txt 2024-07-19T09:05:49,346 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-07-19T09:05:49,355 reading manifest file 'pinder.egg-info/SOURCES.txt' 2024-07-19T09:05:49,374 adding license file 'LICENSE' 2024-07-19T09:05:49,403 writing manifest file 'pinder.egg-info/SOURCES.txt' 2024-07-19T09:05:49,452 copying src/pinder-data/pinder/data/README.md -> build/lib/pinder/data 2024-07-19T09:05:49,455 copying src/pinder-methods/pinder/methods/README.md -> build/lib/pinder/methods 2024-07-19T09:05:49,489 installing to build/bdist.linux-armv7l/wheel 2024-07-19T09:05:49,490 running install 2024-07-19T09:05:49,516 running install_lib 2024-07-19T09:05:49,525 creating build/bdist.linux-armv7l 2024-07-19T09:05:49,526 creating build/bdist.linux-armv7l/wheel 2024-07-19T09:05:49,527 creating build/bdist.linux-armv7l/wheel/pinder 2024-07-19T09:05:49,529 creating build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,530 copying build/lib/pinder/data/graph_utils.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,532 copying build/lib/pinder/data/csv_utils.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,534 copying build/lib/pinder/data/alignment_utils.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,536 copying build/lib/pinder/data/get_splits.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,539 copying build/lib/pinder/data/get_data.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,542 copying build/lib/pinder/data/get_apo.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,544 copying build/lib/pinder/data/find_transitive_hits.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,547 copying build/lib/pinder/data/README.md -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,549 copying build/lib/pinder/data/get_clusters.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,551 copying build/lib/pinder/data/get_annotations.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,554 creating build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,555 copying build/lib/pinder/data/plot/plot.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,558 copying build/lib/pinder/data/plot/datasets.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,560 copying build/lib/pinder/data/plot/categories.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,562 copying build/lib/pinder/data/plot/constants.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,564 copying build/lib/pinder/data/plot/leakage.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,566 copying build/lib/pinder/data/plot/families.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,568 copying build/lib/pinder/data/plot/leaderboards.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,570 copying build/lib/pinder/data/plot/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,572 copying build/lib/pinder/data/plot/validity.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,574 copying build/lib/pinder/data/plot/structure_case_studies.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,577 copying build/lib/pinder/data/plot/run.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,578 copying build/lib/pinder/data/plot/image.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,580 copying build/lib/pinder/data/plot/performance.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,582 copying build/lib/pinder/data/plot/difficulty.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,584 copying build/lib/pinder/data/plot/annotations.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,586 copying build/lib/pinder/data/plot/figure_utils.py -> build/bdist.linux-armv7l/wheel/pinder/data/plot 2024-07-19T09:05:49,588 copying build/lib/pinder/data/get_test_set.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,590 copying build/lib/pinder/data/get_alignment_similarity.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,593 creating build/bdist.linux-armv7l/wheel/pinder/data/qc 2024-07-19T09:05:49,594 copying build/lib/pinder/data/qc/annotation_check.py -> build/bdist.linux-armv7l/wheel/pinder/data/qc 2024-07-19T09:05:49,597 copying build/lib/pinder/data/qc/similarity_check.py -> build/bdist.linux-armv7l/wheel/pinder/data/qc 2024-07-19T09:05:49,599 copying build/lib/pinder/data/qc/ialign.py -> build/bdist.linux-armv7l/wheel/pinder/data/qc 2024-07-19T09:05:49,602 copying build/lib/pinder/data/qc/uniprot_leakage.py -> build/bdist.linux-armv7l/wheel/pinder/data/qc 2024-07-19T09:05:49,603 copying build/lib/pinder/data/qc/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/data/qc 2024-07-19T09:05:49,604 copying build/lib/pinder/data/qc/run.py -> build/bdist.linux-armv7l/wheel/pinder/data/qc 2024-07-19T09:05:49,606 copying build/lib/pinder/data/qc/pfam_diversity.py -> build/bdist.linux-armv7l/wheel/pinder/data/qc 2024-07-19T09:05:49,608 copying build/lib/pinder/data/qc/utils.py -> build/bdist.linux-armv7l/wheel/pinder/data/qc 2024-07-19T09:05:49,611 copying build/lib/pinder/data/foldseek_utils.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,613 copying build/lib/pinder/data/_version.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,615 copying build/lib/pinder/data/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,616 copying build/lib/pinder/data/system.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,618 copying build/lib/pinder/data/run.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,621 creating build/bdist.linux-armv7l/wheel/pinder/data/pipeline 2024-07-19T09:05:49,622 copying build/lib/pinder/data/pipeline/scatter.py -> build/bdist.linux-armv7l/wheel/pinder/data/pipeline 2024-07-19T09:05:49,624 copying build/lib/pinder/data/pipeline/cache.py -> build/bdist.linux-armv7l/wheel/pinder/data/pipeline 2024-07-19T09:05:49,625 copying build/lib/pinder/data/pipeline/constants.py -> build/bdist.linux-armv7l/wheel/pinder/data/pipeline 2024-07-19T09:05:49,627 copying build/lib/pinder/data/pipeline/data_pipeline.py -> build/bdist.linux-armv7l/wheel/pinder/data/pipeline 2024-07-19T09:05:49,630 copying build/lib/pinder/data/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/data/pipeline 2024-07-19T09:05:49,631 copying build/lib/pinder/data/pipeline/tasks.py -> build/bdist.linux-armv7l/wheel/pinder/data/pipeline 2024-07-19T09:05:49,633 copying build/lib/pinder/data/apo_utils.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,636 copying build/lib/pinder/data/config.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,639 copying build/lib/pinder/data/rcsb_rsync.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,641 creating build/bdist.linux-armv7l/wheel/pinder/data/annotation 2024-07-19T09:05:49,642 copying build/lib/pinder/data/annotation/elongation.py -> build/bdist.linux-armv7l/wheel/pinder/data/annotation 2024-07-19T09:05:49,644 copying build/lib/pinder/data/annotation/planarity.py -> build/bdist.linux-armv7l/wheel/pinder/data/annotation 2024-07-19T09:05:49,645 copying build/lib/pinder/data/annotation/canonical_apo.py -> build/bdist.linux-armv7l/wheel/pinder/data/annotation 2024-07-19T09:05:49,647 copying build/lib/pinder/data/annotation/constants.py -> build/bdist.linux-armv7l/wheel/pinder/data/annotation 2024-07-19T09:05:49,649 copying build/lib/pinder/data/annotation/detached_components.py -> build/bdist.linux-armv7l/wheel/pinder/data/annotation 2024-07-19T09:05:49,651 copying build/lib/pinder/data/annotation/interface_gaps.py -> build/bdist.linux-armv7l/wheel/pinder/data/annotation 2024-07-19T09:05:49,653 copying build/lib/pinder/data/annotation/graphql.py -> build/bdist.linux-armv7l/wheel/pinder/data/annotation 2024-07-19T09:05:49,655 copying build/lib/pinder/data/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/data/annotation 2024-07-19T09:05:49,657 copying build/lib/pinder/data/annotation/contact_classification.py -> build/bdist.linux-armv7l/wheel/pinder/data/annotation 2024-07-19T09:05:49,659 copying build/lib/pinder/data/annotation/sabdab.py -> build/bdist.linux-armv7l/wheel/pinder/data/annotation 2024-07-19T09:05:49,661 copying build/lib/pinder/data/get_dimers.py -> build/bdist.linux-armv7l/wheel/pinder/data 2024-07-19T09:05:49,665 creating build/bdist.linux-armv7l/wheel/pinder/methods 2024-07-19T09:05:49,666 creating build/bdist.linux-armv7l/wheel/pinder/methods/preprocess 2024-07-19T09:05:49,667 copying build/lib/pinder/methods/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/methods/preprocess 2024-07-19T09:05:49,669 copying build/lib/pinder/methods/README.md -> build/bdist.linux-armv7l/wheel/pinder/methods 2024-07-19T09:05:49,671 copying build/lib/pinder/methods/_version.py -> build/bdist.linux-armv7l/wheel/pinder/methods 2024-07-19T09:05:49,672 copying build/lib/pinder/methods/main.py -> build/bdist.linux-armv7l/wheel/pinder/methods 2024-07-19T09:05:49,674 copying build/lib/pinder/methods/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/methods 2024-07-19T09:05:49,676 creating build/bdist.linux-armv7l/wheel/pinder/methods/run 2024-07-19T09:05:49,678 creating build/bdist.linux-armv7l/wheel/pinder/methods/run/patchdock 2024-07-19T09:05:49,678 copying build/lib/pinder/methods/run/patchdock/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/methods/run/patchdock 2024-07-19T09:05:49,680 copying build/lib/pinder/methods/run/patchdock/predict.py -> build/bdist.linux-armv7l/wheel/pinder/methods/run/patchdock 2024-07-19T09:05:49,682 creating build/bdist.linux-armv7l/wheel/pinder/methods/run/af2mm 2024-07-19T09:05:49,683 copying build/lib/pinder/methods/run/af2mm/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/methods/run/af2mm 2024-07-19T09:05:49,685 creating build/bdist.linux-armv7l/wheel/pinder/methods/run/frodock 2024-07-19T09:05:49,686 copying build/lib/pinder/methods/run/frodock/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/methods/run/frodock 2024-07-19T09:05:49,688 copying build/lib/pinder/methods/run/frodock/predict.py -> build/bdist.linux-armv7l/wheel/pinder/methods/run/frodock 2024-07-19T09:05:49,690 creating build/bdist.linux-armv7l/wheel/pinder/methods/run/hdock 2024-07-19T09:05:49,691 copying build/lib/pinder/methods/run/hdock/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/methods/run/hdock 2024-07-19T09:05:49,692 copying build/lib/pinder/methods/run/hdock/predict.py -> build/bdist.linux-armv7l/wheel/pinder/methods/run/hdock 2024-07-19T09:05:49,694 copying build/lib/pinder/methods/run/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/methods/run 2024-07-19T09:05:49,696 creating build/bdist.linux-armv7l/wheel/pinder/methods/train 2024-07-19T09:05:49,697 copying build/lib/pinder/methods/train/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/methods/train 2024-07-19T09:05:49,699 creating build/bdist.linux-armv7l/wheel/pinder/core 2024-07-19T09:05:49,700 creating build/bdist.linux-armv7l/wheel/pinder/core/structure 2024-07-19T09:05:49,701 copying build/lib/pinder/core/structure/models.py -> build/bdist.linux-armv7l/wheel/pinder/core/structure 2024-07-19T09:05:49,703 copying build/lib/pinder/core/structure/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/core/structure 2024-07-19T09:05:49,704 copying build/lib/pinder/core/structure/surgery.py -> build/bdist.linux-armv7l/wheel/pinder/core/structure 2024-07-19T09:05:49,706 copying build/lib/pinder/core/structure/contacts.py -> build/bdist.linux-armv7l/wheel/pinder/core/structure 2024-07-19T09:05:49,709 copying build/lib/pinder/core/structure/atoms.py -> build/bdist.linux-armv7l/wheel/pinder/core/structure 2024-07-19T09:05:49,712 copying build/lib/pinder/core/structure/superimpose.py -> build/bdist.linux-armv7l/wheel/pinder/core/structure 2024-07-19T09:05:49,714 creating build/bdist.linux-armv7l/wheel/pinder/core/index 2024-07-19T09:05:49,715 copying build/lib/pinder/core/index/id.py -> build/bdist.linux-armv7l/wheel/pinder/core/index 2024-07-19T09:05:49,717 copying build/lib/pinder/core/index/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/core/index 2024-07-19T09:05:49,719 copying build/lib/pinder/core/index/system.py -> build/bdist.linux-armv7l/wheel/pinder/core/index 2024-07-19T09:05:49,721 copying build/lib/pinder/core/index/utils.py -> build/bdist.linux-armv7l/wheel/pinder/core/index 2024-07-19T09:05:49,724 copying build/lib/pinder/core/_version.py -> build/bdist.linux-armv7l/wheel/pinder/core 2024-07-19T09:05:49,726 creating build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,727 copying build/lib/pinder/core/utils/timer.py -> build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,729 copying build/lib/pinder/core/utils/paths.py -> build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,731 copying build/lib/pinder/core/utils/log.py -> build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,733 copying build/lib/pinder/core/utils/constants.py -> build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,735 copying build/lib/pinder/core/utils/cloud.py -> build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,738 copying build/lib/pinder/core/utils/pdb_utils.py -> build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,740 copying build/lib/pinder/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,742 copying build/lib/pinder/core/utils/string.py -> build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,743 copying build/lib/pinder/core/utils/retry.py -> build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,745 copying build/lib/pinder/core/utils/unbound.py -> build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,747 copying build/lib/pinder/core/utils/process.py -> build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,749 copying build/lib/pinder/core/utils/dataclass.py -> build/bdist.linux-armv7l/wheel/pinder/core/utils 2024-07-19T09:05:49,751 creating build/bdist.linux-armv7l/wheel/pinder/core/loader 2024-07-19T09:05:49,752 copying build/lib/pinder/core/loader/writer.py -> build/bdist.linux-armv7l/wheel/pinder/core/loader 2024-07-19T09:05:49,754 copying build/lib/pinder/core/loader/geodata.py -> build/bdist.linux-armv7l/wheel/pinder/core/loader 2024-07-19T09:05:49,756 copying build/lib/pinder/core/loader/structure.py -> build/bdist.linux-armv7l/wheel/pinder/core/loader 2024-07-19T09:05:49,758 copying build/lib/pinder/core/loader/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/core/loader 2024-07-19T09:05:49,760 copying build/lib/pinder/core/loader/filters.py -> build/bdist.linux-armv7l/wheel/pinder/core/loader 2024-07-19T09:05:49,763 copying build/lib/pinder/core/loader/dataset.py -> build/bdist.linux-armv7l/wheel/pinder/core/loader 2024-07-19T09:05:49,765 copying build/lib/pinder/core/loader/utils.py -> build/bdist.linux-armv7l/wheel/pinder/core/loader 2024-07-19T09:05:49,767 copying build/lib/pinder/core/loader/transforms.py -> build/bdist.linux-armv7l/wheel/pinder/core/loader 2024-07-19T09:05:49,768 copying build/lib/pinder/core/loader/loader.py -> build/bdist.linux-armv7l/wheel/pinder/core/loader 2024-07-19T09:05:49,770 copying build/lib/pinder/core/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/core 2024-07-19T09:05:49,772 creating build/bdist.linux-armv7l/wheel/pinder/core/submit 2024-07-19T09:05:49,773 copying build/lib/pinder/core/submit/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/core/submit 2024-07-19T09:05:49,775 creating build/bdist.linux-armv7l/wheel/pinder/eval 2024-07-19T09:05:49,776 copying build/lib/pinder/eval/create_submission.py -> build/bdist.linux-armv7l/wheel/pinder/eval 2024-07-19T09:05:49,778 creating build/bdist.linux-armv7l/wheel/pinder/eval/clashes 2024-07-19T09:05:49,779 copying build/lib/pinder/eval/clashes/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/eval/clashes 2024-07-19T09:05:49,781 copying build/lib/pinder/eval/_version.py -> build/bdist.linux-armv7l/wheel/pinder/eval 2024-07-19T09:05:49,783 copying build/lib/pinder/eval/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/eval 2024-07-19T09:05:49,784 copying build/lib/pinder/eval/run.py -> build/bdist.linux-armv7l/wheel/pinder/eval 2024-07-19T09:05:49,786 creating build/bdist.linux-armv7l/wheel/pinder/eval/dockq 2024-07-19T09:05:49,787 copying build/lib/pinder/eval/dockq/biotite_dockq.py -> build/bdist.linux-armv7l/wheel/pinder/eval/dockq 2024-07-19T09:05:49,794 copying build/lib/pinder/eval/dockq/metrics.py -> build/bdist.linux-armv7l/wheel/pinder/eval/dockq 2024-07-19T09:05:49,796 copying build/lib/pinder/eval/dockq/__init__.py -> build/bdist.linux-armv7l/wheel/pinder/eval/dockq 2024-07-19T09:05:49,798 copying build/lib/pinder/eval/dockq/method.py -> build/bdist.linux-armv7l/wheel/pinder/eval/dockq 2024-07-19T09:05:49,801 copying build/lib/pinder/eval/dockq/unbound.py -> build/bdist.linux-armv7l/wheel/pinder/eval/dockq 2024-07-19T09:05:49,803 running install_egg_info 2024-07-19T09:05:49,812 Copying pinder.egg-info to build/bdist.linux-armv7l/wheel/pinder-0.0.1-py3.9.egg-info 2024-07-19T09:05:49,826 running install_scripts 2024-07-19T09:05:49,871 creating build/bdist.linux-armv7l/wheel/pinder-0.0.1.dist-info/WHEEL 2024-07-19T09:05:49,874 creating '/tmp/pip-wheel-kvq9hmmn/.tmp-tli246ve/pinder-0.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-19T09:05:49,876 adding 'pinder/core/__init__.py' 2024-07-19T09:05:49,878 adding 'pinder/core/_version.py' 2024-07-19T09:05:49,879 adding 'pinder/core/index/__init__.py' 2024-07-19T09:05:49,881 adding 'pinder/core/index/id.py' 2024-07-19T09:05:49,884 adding 'pinder/core/index/system.py' 2024-07-19T09:05:49,889 adding 'pinder/core/index/utils.py' 2024-07-19T09:05:49,892 adding 'pinder/core/loader/__init__.py' 2024-07-19T09:05:49,894 adding 'pinder/core/loader/dataset.py' 2024-07-19T09:05:49,897 adding 'pinder/core/loader/filters.py' 2024-07-19T09:05:49,898 adding 'pinder/core/loader/geodata.py' 2024-07-19T09:05:49,900 adding 'pinder/core/loader/loader.py' 2024-07-19T09:05:49,903 adding 'pinder/core/loader/structure.py' 2024-07-19T09:05:49,905 adding 'pinder/core/loader/transforms.py' 2024-07-19T09:05:49,906 adding 'pinder/core/loader/utils.py' 2024-07-19T09:05:49,907 adding 'pinder/core/loader/writer.py' 2024-07-19T09:05:49,909 adding 'pinder/core/structure/__init__.py' 2024-07-19T09:05:49,913 adding 'pinder/core/structure/atoms.py' 2024-07-19T09:05:49,916 adding 'pinder/core/structure/contacts.py' 2024-07-19T09:05:49,917 adding 'pinder/core/structure/models.py' 2024-07-19T09:05:49,919 adding 'pinder/core/structure/superimpose.py' 2024-07-19T09:05:49,920 adding 'pinder/core/structure/surgery.py' 2024-07-19T09:05:49,922 adding 'pinder/core/submit/__init__.py' 2024-07-19T09:05:49,923 adding 'pinder/core/utils/__init__.py' 2024-07-19T09:05:49,927 adding 'pinder/core/utils/cloud.py' 2024-07-19T09:05:49,930 adding 'pinder/core/utils/constants.py' 2024-07-19T09:05:49,931 adding 'pinder/core/utils/dataclass.py' 2024-07-19T09:05:49,933 adding 'pinder/core/utils/log.py' 2024-07-19T09:05:49,935 adding 'pinder/core/utils/paths.py' 2024-07-19T09:05:49,937 adding 'pinder/core/utils/pdb_utils.py' 2024-07-19T09:05:49,938 adding 'pinder/core/utils/process.py' 2024-07-19T09:05:49,939 adding 'pinder/core/utils/retry.py' 2024-07-19T09:05:49,941 adding 'pinder/core/utils/string.py' 2024-07-19T09:05:49,942 adding 'pinder/core/utils/timer.py' 2024-07-19T09:05:49,944 adding 'pinder/core/utils/unbound.py' 2024-07-19T09:05:49,948 adding 'pinder/data/README.md' 2024-07-19T09:05:49,949 adding 'pinder/data/__init__.py' 2024-07-19T09:05:49,950 adding 'pinder/data/_version.py' 2024-07-19T09:05:49,953 adding 'pinder/data/alignment_utils.py' 2024-07-19T09:05:49,957 adding 'pinder/data/apo_utils.py' 2024-07-19T09:05:49,960 adding 'pinder/data/config.py' 2024-07-19T09:05:49,962 adding 'pinder/data/csv_utils.py' 2024-07-19T09:05:49,965 adding 'pinder/data/find_transitive_hits.py' 2024-07-19T09:05:49,968 adding 'pinder/data/foldseek_utils.py' 2024-07-19T09:05:49,971 adding 'pinder/data/get_alignment_similarity.py' 2024-07-19T09:05:49,973 adding 'pinder/data/get_annotations.py' 2024-07-19T09:05:49,977 adding 'pinder/data/get_apo.py' 2024-07-19T09:05:49,979 adding 'pinder/data/get_clusters.py' 2024-07-19T09:05:49,983 adding 'pinder/data/get_data.py' 2024-07-19T09:05:49,990 adding 'pinder/data/get_dimers.py' 2024-07-19T09:05:49,994 adding 'pinder/data/get_splits.py' 2024-07-19T09:05:49,996 adding 'pinder/data/get_test_set.py' 2024-07-19T09:05:49,999 adding 'pinder/data/graph_utils.py' 2024-07-19T09:05:50,001 adding 'pinder/data/rcsb_rsync.py' 2024-07-19T09:05:50,002 adding 'pinder/data/run.py' 2024-07-19T09:05:50,004 adding 'pinder/data/system.py' 2024-07-19T09:05:50,005 adding 'pinder/data/annotation/__init__.py' 2024-07-19T09:05:50,007 adding 'pinder/data/annotation/canonical_apo.py' 2024-07-19T09:05:50,008 adding 'pinder/data/annotation/constants.py' 2024-07-19T09:05:50,010 adding 'pinder/data/annotation/contact_classification.py' 2024-07-19T09:05:50,011 adding 'pinder/data/annotation/detached_components.py' 2024-07-19T09:05:50,013 adding 'pinder/data/annotation/elongation.py' 2024-07-19T09:05:50,015 adding 'pinder/data/annotation/graphql.py' 2024-07-19T09:05:50,017 adding 'pinder/data/annotation/interface_gaps.py' 2024-07-19T09:05:50,018 adding 'pinder/data/annotation/planarity.py' 2024-07-19T09:05:50,020 adding 'pinder/data/annotation/sabdab.py' 2024-07-19T09:05:50,022 adding 'pinder/data/pipeline/__init__.py' 2024-07-19T09:05:50,023 adding 'pinder/data/pipeline/cache.py' 2024-07-19T09:05:50,024 adding 'pinder/data/pipeline/constants.py' 2024-07-19T09:05:50,028 adding 'pinder/data/pipeline/data_pipeline.py' 2024-07-19T09:05:50,029 adding 'pinder/data/pipeline/scatter.py' 2024-07-19T09:05:50,031 adding 'pinder/data/pipeline/tasks.py' 2024-07-19T09:05:50,033 adding 'pinder/data/plot/__init__.py' 2024-07-19T09:05:50,034 adding 'pinder/data/plot/annotations.py' 2024-07-19T09:05:50,037 adding 'pinder/data/plot/categories.py' 2024-07-19T09:05:50,038 adding 'pinder/data/plot/constants.py' 2024-07-19T09:05:50,040 adding 'pinder/data/plot/datasets.py' 2024-07-19T09:05:50,042 adding 'pinder/data/plot/difficulty.py' 2024-07-19T09:05:50,044 adding 'pinder/data/plot/families.py' 2024-07-19T09:05:50,045 adding 'pinder/data/plot/figure_utils.py' 2024-07-19T09:05:50,046 adding 'pinder/data/plot/image.py' 2024-07-19T09:05:50,048 adding 'pinder/data/plot/leaderboards.py' 2024-07-19T09:05:50,051 adding 'pinder/data/plot/leakage.py' 2024-07-19T09:05:50,054 adding 'pinder/data/plot/performance.py' 2024-07-19T09:05:50,057 adding 'pinder/data/plot/plot.py' 2024-07-19T09:05:50,058 adding 'pinder/data/plot/run.py' 2024-07-19T09:05:50,061 adding 'pinder/data/plot/structure_case_studies.py' 2024-07-19T09:05:50,063 adding 'pinder/data/plot/validity.py' 2024-07-19T09:05:50,065 adding 'pinder/data/qc/__init__.py' 2024-07-19T09:05:50,068 adding 'pinder/data/qc/annotation_check.py' 2024-07-19T09:05:50,069 adding 'pinder/data/qc/ialign.py' 2024-07-19T09:05:50,072 adding 'pinder/data/qc/pfam_diversity.py' 2024-07-19T09:05:50,073 adding 'pinder/data/qc/run.py' 2024-07-19T09:05:50,076 adding 'pinder/data/qc/similarity_check.py' 2024-07-19T09:05:50,077 adding 'pinder/data/qc/uniprot_leakage.py' 2024-07-19T09:05:50,079 adding 'pinder/data/qc/utils.py' 2024-07-19T09:05:50,081 adding 'pinder/eval/__init__.py' 2024-07-19T09:05:50,082 adding 'pinder/eval/_version.py' 2024-07-19T09:05:50,083 adding 'pinder/eval/create_submission.py' 2024-07-19T09:05:50,085 adding 'pinder/eval/run.py' 2024-07-19T09:05:50,086 adding 'pinder/eval/clashes/__init__.py' 2024-07-19T09:05:50,088 adding 'pinder/eval/dockq/__init__.py' 2024-07-19T09:05:50,091 adding 'pinder/eval/dockq/biotite_dockq.py' 2024-07-19T09:05:50,094 adding 'pinder/eval/dockq/method.py' 2024-07-19T09:05:50,097 adding 'pinder/eval/dockq/metrics.py' 2024-07-19T09:05:50,098 adding 'pinder/eval/dockq/unbound.py' 2024-07-19T09:05:50,100 adding 'pinder/methods/README.md' 2024-07-19T09:05:50,102 adding 'pinder/methods/__init__.py' 2024-07-19T09:05:50,103 adding 'pinder/methods/_version.py' 2024-07-19T09:05:50,104 adding 'pinder/methods/main.py' 2024-07-19T09:05:50,106 adding 'pinder/methods/preprocess/__init__.py' 2024-07-19T09:05:50,108 adding 'pinder/methods/run/__init__.py' 2024-07-19T09:05:50,109 adding 'pinder/methods/run/af2mm/__init__.py' 2024-07-19T09:05:50,111 adding 'pinder/methods/run/frodock/__init__.py' 2024-07-19T09:05:50,113 adding 'pinder/methods/run/frodock/predict.py' 2024-07-19T09:05:50,114 adding 'pinder/methods/run/hdock/__init__.py' 2024-07-19T09:05:50,116 adding 'pinder/methods/run/hdock/predict.py' 2024-07-19T09:05:50,118 adding 'pinder/methods/run/patchdock/__init__.py' 2024-07-19T09:05:50,119 adding 'pinder/methods/run/patchdock/predict.py' 2024-07-19T09:05:50,121 adding 'pinder/methods/train/__init__.py' 2024-07-19T09:05:50,124 adding 'pinder-0.0.1.dist-info/LICENSE' 2024-07-19T09:05:50,131 adding 'pinder-0.0.1.dist-info/METADATA' 2024-07-19T09:05:50,132 adding 'pinder-0.0.1.dist-info/WHEEL' 2024-07-19T09:05:50,133 adding 'pinder-0.0.1.dist-info/entry_points.txt' 2024-07-19T09:05:50,134 adding 'pinder-0.0.1.dist-info/top_level.txt' 2024-07-19T09:05:50,136 adding 'pinder-0.0.1.dist-info/RECORD' 2024-07-19T09:05:50,146 removing build/bdist.linux-armv7l/wheel 2024-07-19T09:05:50,309 Building wheel for pinder (pyproject.toml): finished with status 'done' 2024-07-19T09:05:50,322 Created wheel for pinder: filename=pinder-0.0.1-py3-none-any.whl size=335203 sha256=97b2cdf453c1be4089f3a80b58baa3f648d953bb9473357dad6a7bbdbeb162f2 2024-07-19T09:05:50,323 Stored in directory: /tmp/pip-ephem-wheel-cache-kp8ukopv/wheels/65/4c/17/9f84210018f0f877f65cbe7bae7648d876505edad4c0958caa 2024-07-19T09:05:50,346 Successfully built pinder 2024-07-19T09:05:50,409 Removed build tracker: '/tmp/pip-build-tracker-g_3704j7'