2024-07-24T00:03:16,448 Created temporary directory: /tmp/pip-build-tracker-_i9n8m8p 2024-07-24T00:03:16,450 Initialized build tracking at /tmp/pip-build-tracker-_i9n8m8p 2024-07-24T00:03:16,450 Created build tracker: /tmp/pip-build-tracker-_i9n8m8p 2024-07-24T00:03:16,450 Entered build tracker: /tmp/pip-build-tracker-_i9n8m8p 2024-07-24T00:03:16,451 Created temporary directory: /tmp/pip-wheel-jnk90ann 2024-07-24T00:03:16,455 Created temporary directory: /tmp/pip-ephem-wheel-cache-r18k5w1j 2024-07-24T00:03:16,483 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-24T00:03:16,486 2 location(s) to search for versions of indra: 2024-07-24T00:03:16,486 * https://pypi.org/simple/indra/ 2024-07-24T00:03:16,486 * https://www.piwheels.org/simple/indra/ 2024-07-24T00:03:16,486 Fetching project page and analyzing links: https://pypi.org/simple/indra/ 2024-07-24T00:03:16,487 Getting page https://pypi.org/simple/indra/ 2024-07-24T00:03:16,489 Found index url https://pypi.org/simple/ 2024-07-24T00:03:16,587 Fetched page https://pypi.org/simple/indra/ as application/vnd.pypi.simple.v1+json 2024-07-24T00:03:16,597 Found link https://files.pythonhosted.org/packages/9a/3a/5af9f8f46f67d2b2b14eb9d3f4a4b93bc37e7b053398c292830974edd2a5/indra-1.0.1.tar.gz (from https://pypi.org/simple/indra/), version: 1.0.1 2024-07-24T00:03:16,598 Found link https://files.pythonhosted.org/packages/dc/4f/7bcc071070bf8ac5538a0ec51aeba95df70b5b465663bf34579d9fd450e1/indra-1.1.1.tar.gz (from https://pypi.org/simple/indra/), version: 1.1.1 2024-07-24T00:03:16,598 Found link https://files.pythonhosted.org/packages/2e/55/cf1a5a947d62e54ede85d622480555b22d30854849dc9bc3ef500f2a9908/indra-1.2.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.2.0 2024-07-24T00:03:16,599 Found link https://files.pythonhosted.org/packages/63/52/a21e71a263232d841623680201b890f7398da0afb84bbfd038b6706df7dd/indra-1.3.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.3.0 2024-07-24T00:03:16,600 Found link https://files.pythonhosted.org/packages/f9/9a/a1c7b208fc4d2badda4a9c6b6ff2fb106659940827b9e542a7eaa9b33a0e/indra-1.4.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.4.0 2024-07-24T00:03:16,601 Found link https://files.pythonhosted.org/packages/62/6f/7d6e03d18bcfbb4891f0e2ca403c067c4213f206df04a39006ab84218ae0/indra-1.4.1.tar.gz (from https://pypi.org/simple/indra/), version: 1.4.1 2024-07-24T00:03:16,601 Found link https://files.pythonhosted.org/packages/8d/c6/1713570f7e60341c8848425d98fdc8710901ec7ccf94ae1270c7a174dfa8/indra-1.4.2.tar.gz (from https://pypi.org/simple/indra/), version: 1.4.2 2024-07-24T00:03:16,602 Found link https://files.pythonhosted.org/packages/24/f9/a085a2abc00925e9de4c04fec672a311221a56aaa585df51991f59f65da3/indra-1.5.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.5.0 2024-07-24T00:03:16,603 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/16/f9/df804d21323c66835361c86502714649734273a715e90e27dbea3ef90509/indra-1.6.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,604 Found link https://files.pythonhosted.org/packages/f9/89/f2a345f8d8b6fcbda76dfc01645c24e959e45e701fc2b12f7b7adf50c7dd/indra-1.6.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.6.0 2024-07-24T00:03:16,604 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/f6/49/8b715af49116919b4508d6cbc19fe82d9f9360e123fb47ca8d1f20012f65/indra-1.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,605 Found link https://files.pythonhosted.org/packages/31/59/9c49fd4d0685108b70ede3e3221e1d088dde80c2aef5680b990599f31e36/indra-1.7.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.7.0 2024-07-24T00:03:16,606 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/98/76/03e13ae6f13a10e75308133bdcc543234a24da2cd1fac7e28c9bed420d65/indra-1.8.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,606 Found link https://files.pythonhosted.org/packages/35/5d/dc127fa7fc509552b877c578562f03fa83136f9facb27e6b39dcd4f64fe5/indra-1.8.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.8.0 2024-07-24T00:03:16,607 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/40/e0/b764069b070559a6f424dbf4a4d470e760eece7a152ba5bdb8154fcf046b/indra-1.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,608 Found link https://files.pythonhosted.org/packages/69/23/6218d10eaed8404a3fe46a62264145b6a7c5d67a5588faf689fe144cc820/indra-1.9.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.9.0 2024-07-24T00:03:16,608 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/16/32/b3a774b8a0b38a488e4f71747cbc9ebff2b6fa5652d4a525e212fb56342c/indra-1.10.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,609 Found link https://files.pythonhosted.org/packages/cb/51/b04ac15acb941b73936fa963fb4432ed4a2d212a8d7029cdaeb51238015b/indra-1.10.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.10.0 2024-07-24T00:03:16,609 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/00/c4/0a827fb29e03175382d12c499c6adc60534af8dd3732c35992ce16abe0c9/indra-1.11.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,610 Found link https://files.pythonhosted.org/packages/f0/3e/3042b24a895ef47152ac4622db6a451ee646970acefec3ddf1fd46935a07/indra-1.11.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.11.0 2024-07-24T00:03:16,610 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/64/51/c77d3b93ca90cd5697a1632a111d85eca82a880cf5171b070aa4bc0c6689/indra-1.12.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,611 Found link https://files.pythonhosted.org/packages/fb/bc/90de967323b8d132ee0feb20dfa5df1accb35d0387c780837302d3e81d05/indra-1.12.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.12.0 2024-07-24T00:03:16,611 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/e7/b7/110ece0643c233cf4e3dedc794fd5a37973e692dad29e5a255c531d13c34/indra-1.13.0-py2.py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,612 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/e8/64/944770797a1eaeb2f4bd97acb1f6a26e2bd34602ab6895b3cd7a28afbd1e/indra-1.13.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,613 Found link https://files.pythonhosted.org/packages/4a/6f/74df79e32c878bb0ea95d80e9ee6499f6a5826032e6307b53e672fb8c2c1/indra-1.13.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.13.0 2024-07-24T00:03:16,613 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/4f/54/109b56cd4baf682d1523104245e648151518a38a62c0d3034a2a49335809/indra-1.14.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,614 Found link https://files.pythonhosted.org/packages/c1/79/eddc0f7d9ca9756964cd0c76f47ce02efbc17413c62787987e9ea8f6002e/indra-1.14.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.14.0 2024-07-24T00:03:16,615 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/ad/ad/36d2fa5fdd4998ee595e6d2c387d973dbfb6e9be7420c7f634df0fbf1237/indra-1.14.1-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,615 Found link https://files.pythonhosted.org/packages/8e/02/be7d6cb0e0a5b7a5f5b538c78e6c908d4df7310f035c47749ae68decf8b2/indra-1.14.1.tar.gz (from https://pypi.org/simple/indra/), version: 1.14.1 2024-07-24T00:03:16,616 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/80/39/5942a649bf41d30241529a0889f67e7f75e32c7ac139d199cc3d76bd0ec3/indra-1.15.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,616 Found link https://files.pythonhosted.org/packages/1f/60/bf1a9d72aa8b8ad68af1175b49c0a3f55184398c125ea068bc1903ad6bd6/indra-1.15.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.15.0 2024-07-24T00:03:16,617 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/ec/20/be8d777ab90221d670c1b221a813b772fe6bae7716bc39ba7d4d4f647db2/indra-1.15.1-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,618 Found link https://files.pythonhosted.org/packages/fb/58/3e5bbab6cf447422a207f2b48502e191ffbc1ba642a606fe052bf530c54f/indra-1.15.1.tar.gz (from https://pypi.org/simple/indra/), version: 1.15.1 2024-07-24T00:03:16,618 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/b6/2b/3b6a9ee41666ef79c25751c85ad3e948dde2ec1169ca30bbeef7cf6f834f/indra-1.15.2-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,619 Found link https://files.pythonhosted.org/packages/a5/00/1d32762c9fc453039fced117e1dfe83a245f7c44c4303263b5429a345b89/indra-1.15.2.tar.gz (from https://pypi.org/simple/indra/), version: 1.15.2 2024-07-24T00:03:16,619 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/72/0f/6aec7c7cfbf336647ad965c75b4bd9ca2daef22256a5b92d02cb9f1c7958/indra-1.16.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,620 Found link https://files.pythonhosted.org/packages/d7/ee/56281c837ee468f63d493bda7e028dadd3f1f8228461dcaabbb3358166d4/indra-1.16.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.16.0 2024-07-24T00:03:16,620 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/48/60/acb9333580d4b9be64e74c68639ba8c2715712c077871172dd9ac85bdc47/indra-1.17.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,621 Found link https://files.pythonhosted.org/packages/72/7d/b8683f17a613aa915af3a52f88c1e6619988d3f26b22693c8c1783b75076/indra-1.17.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.17.0 2024-07-24T00:03:16,621 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/2c/14/596d0c7398b66e98856195ee9ea926dce516a8dcf4b9f2ccb484705980d7/indra-1.18.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,622 Found link https://files.pythonhosted.org/packages/c8/c2/d4ac2c7dd22075aa7555f57b488ee3e7aec79231ec0ce158ca7a12477dee/indra-1.18.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.18.0 2024-07-24T00:03:16,623 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/d2/cc/cb805a5cb8ff1daecf116d251ceb34e230ec9473959c2f6a8e1db1e714e4/indra-1.19.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,623 Found link https://files.pythonhosted.org/packages/0a/a8/12048d4bf6326acaa7ae9436ced7aaec994d6b849f9b788328aa492e335c/indra-1.19.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.19.0 2024-07-24T00:03:16,624 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/55/d3/b197668130bfd558cd9544efb60aadfaa0f858059c89812541a83ff68c0e/indra-1.20.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,625 Found link https://files.pythonhosted.org/packages/12/76/5e396f1f300ac19d6800f5c2afbdc0f277e9d4f94387cead0bac11257593/indra-1.20.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.20.0 2024-07-24T00:03:16,625 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/d5/c9/fe66550f7d6325659e8f7779d49398d0752caa28db798e723f61b4d0f6e5/indra-1.21.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,626 Found link https://files.pythonhosted.org/packages/4f/73/49d043eaf0a6aa775565c0aba119869ffe0c37543b02068848284aa89f8c/indra-1.21.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.21.0 2024-07-24T00:03:16,627 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/b7/e0/80a88b67dbd63c4a929c186ca917fb7d94d2aae59ed0122a5d91f92a4354/indra-1.22.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,627 Found link https://files.pythonhosted.org/packages/5c/6e/76199902ab956cf5253d2f826a3597e6e1533803f7f9ba6317307c1eb98e/indra-1.22.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.22.0 2024-07-24T00:03:16,628 Skipping link: No binaries permitted for indra: https://files.pythonhosted.org/packages/50/af/c871e06df92a201b1ff7b6b5eb3a6ef6a8218c2340ec81d3e9ec5b10c438/indra-1.23.0-py3-none-any.whl (from https://pypi.org/simple/indra/) 2024-07-24T00:03:16,629 Found link https://files.pythonhosted.org/packages/f0/78/7b0ee979d80496c23d88014b81d4bac15b53ca4be7e131219a17233fb58b/indra-1.23.0.tar.gz (from https://pypi.org/simple/indra/), version: 1.23.0 2024-07-24T00:03:16,629 Fetching project page and analyzing links: https://www.piwheels.org/simple/indra/ 2024-07-24T00:03:16,630 Getting page https://www.piwheels.org/simple/indra/ 2024-07-24T00:03:16,631 Found index url https://www.piwheels.org/simple/ 2024-07-24T00:03:16,672 Fetched page https://www.piwheels.org/simple/indra/ as text/html 2024-07-24T00:03:16,680 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.22.0-py3-none-any.whl#sha256=d07f91f10aeb50c6baeb98f02c5e2f0a47fd1c54bcd7332b0dcfdfe1995cd5ac (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,681 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.21.0-py3-none-any.whl#sha256=31c1c672a67f76a11da9f4fad6a3dbb85f3453a0506343dc577f538c987c1217 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,682 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.20.0-py3-none-any.whl#sha256=da605cc995dbe85c8df6f606af7bad19ac8d52a265c47c1a17c8d5699eb928d1 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,682 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.19.0-py3-none-any.whl#sha256=fff9c75b911e940412d23f4f37d9dcc0cd35fc6e68cf5bb1d84af0f4434e75f4 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,682 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.18.0-py3-none-any.whl#sha256=9bfa5f15c08c6965c29ffa41887e931267414fd3fb5af67da865ea24ee7f9e68 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,683 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.17.0-py3-none-any.whl#sha256=9d883aaabd8c698990305070ae64fb8de79119601b01c8222b736ef94d620217 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,684 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.16.0-py3-none-any.whl#sha256=f5efdd4fb3a890ac30e99219202e179cf54ef4d8f2bec430454d4bcc31a53f49 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,685 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.15.2-py3-none-any.whl#sha256=a887da49fae423714d62cda5a3a4b1fac008a37b0336b55639d85624e6924e2c (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,685 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.15.1-py3-none-any.whl#sha256=e5b6ac76c39aadf4c3ce7d6168f6339478f707817468c49a18b7981bfc6a6241 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,686 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.15.0-py3-none-any.whl#sha256=0819083e25abe18183efba7679b66b12c95246d2a69dbf3459f183eafe33554a (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,686 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.14.1-py3-none-any.whl#sha256=d173e741545d19a0b8db4d9e39786bd6a3fcdf9f385e2ef9d0a53ef08b300765 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,687 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.14.0-py3-none-any.whl#sha256=37b11f3ccb77fa3bccdabc9e6387b300afd10f2a8c1c37a89870cbfa30d204e5 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,687 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.13.0-py2.py3-none-any.whl#sha256=b525fdcc97f0b91af44ae1c1769d3e2117a9b1ab5cf4186cb9f092b89f0e2907 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,688 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.12.0-py2.py3-none-any.whl#sha256=e1342184f4b2386c67e3198436c205c3b1cb870dea0f0662dfc411a3caebc065 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,689 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.11.0-py2.py3-none-any.whl#sha256=9d09e98573b1d38993a1064bd1deede4a62c3f5b557472220140d3afb7c57847 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,689 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.10.0-py2.py3-none-any.whl#sha256=2b2df33ef096b4841c9f2a8ed96e0d7d97e757798437351885f6d0d6c06f4fa3 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,689 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.9.0-py2.py3-none-any.whl#sha256=e5a9a0050d69147770407974843d364b820b50d264b54edd9c02f4cd149288b3 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,690 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.8.0-py2.py3-none-any.whl#sha256=61c2e937686aff9efb5ebd5f16e42bbd3350afd4ace8eb9be0e68d6ae359bf67 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,690 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.7.0-py2.py3-none-any.whl#sha256=ec4704a5233741430b5bf0bc97a71bbffa54b715f266e4f20591722f7226876b (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,691 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.6.0-py3-none-any.whl#sha256=1f2d5ff71b163b08234fb90cabad0dd61e26ddf258470b2608dd4fc488145d7a (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,691 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.5.0-py3-none-any.whl#sha256=0f0fb94a770e019e21b6a2bf5b192e6a390ad3604c83a09acef2f11cc7700c23 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,692 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.4.2-py3-none-any.whl#sha256=d41af4cda9a7efd79edda9a36e9f8d52da4bbad1394f1efa4a67739c87ab0a73 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,692 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.4.1-py3-none-any.whl#sha256=4fea4c7b5fb1db897f501aac183e1333507f7781193f12556af7a17070d3b684 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,693 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.4.0-py3-none-any.whl#sha256=a5bfe715c95ebac1ee3aacc66d263aba742074363a47932b8969eb23a3dd7d0d (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,694 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.3.0-py3-none-any.whl#sha256=cab713ec8209f1df543212c36ce35558dc48370b1025db9078934708284fe1e8 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,694 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.2.0-py3-none-any.whl#sha256=96c795e8d047fa5f0d1f4cb1c1e030562c4bb45cd9ca22d73a0f28c53e15d04d (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,695 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.1.1-py3-none-any.whl#sha256=d301a4886aa24f672045e58091fd658bba14f5dd84a4e34cb735ca7bffa30420 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,695 Skipping link: No binaries permitted for indra: https://www.piwheels.org/simple/indra/indra-1.0.1-py3-none-any.whl#sha256=0e80ea14d00810503443dc94faeb1537cd1a4faf9bc0abf6d469d62623ff4ea8 (from https://www.piwheels.org/simple/indra/) 2024-07-24T00:03:16,696 Skipping link: not a file: https://www.piwheels.org/simple/indra/ 2024-07-24T00:03:16,697 Skipping link: not a file: https://pypi.org/simple/indra/ 2024-07-24T00:03:16,718 Given no hashes to check 1 links for project 'indra': discarding no candidates 2024-07-24T00:03:16,736 Collecting indra==1.23.0 2024-07-24T00:03:16,738 Created temporary directory: /tmp/pip-unpack-vusysxo6 2024-07-24T00:03:16,841 Downloading indra-1.23.0.tar.gz (46.2 MB) 2024-07-24T00:03:33,392 Added indra==1.23.0 from https://files.pythonhosted.org/packages/f0/78/7b0ee979d80496c23d88014b81d4bac15b53ca4be7e131219a17233fb58b/indra-1.23.0.tar.gz to build tracker '/tmp/pip-build-tracker-_i9n8m8p' 2024-07-24T00:03:33,394 Running setup.py (path:/tmp/pip-wheel-jnk90ann/indra_1e190aeeca8e4a9398efa54396116cf8/setup.py) egg_info for package indra 2024-07-24T00:03:33,395 Created temporary directory: /tmp/pip-pip-egg-info-m7gj3slh 2024-07-24T00:03:33,395 Preparing metadata (setup.py): started 2024-07-24T00:03:33,397 Running command python setup.py egg_info 2024-07-24T00:03:34,509 running egg_info 2024-07-24T00:03:34,510 creating /tmp/pip-pip-egg-info-m7gj3slh/indra.egg-info 2024-07-24T00:03:34,536 writing /tmp/pip-pip-egg-info-m7gj3slh/indra.egg-info/PKG-INFO 2024-07-24T00:03:34,562 writing dependency_links to /tmp/pip-pip-egg-info-m7gj3slh/indra.egg-info/dependency_links.txt 2024-07-24T00:03:34,563 writing entry points to /tmp/pip-pip-egg-info-m7gj3slh/indra.egg-info/entry_points.txt 2024-07-24T00:03:34,576 writing requirements to /tmp/pip-pip-egg-info-m7gj3slh/indra.egg-info/requires.txt 2024-07-24T00:03:34,578 writing top-level names to /tmp/pip-pip-egg-info-m7gj3slh/indra.egg-info/top_level.txt 2024-07-24T00:03:34,579 writing manifest file '/tmp/pip-pip-egg-info-m7gj3slh/indra.egg-info/SOURCES.txt' 2024-07-24T00:03:34,762 reading manifest file '/tmp/pip-pip-egg-info-m7gj3slh/indra.egg-info/SOURCES.txt' 2024-07-24T00:03:34,763 reading manifest template 'MANIFEST.in' 2024-07-24T00:03:34,796 warning: no files found matching 'indra/tools/reading/util/reach_conf_fmt.txt' 2024-07-24T00:03:34,797 warning: no files found matching 'indra/assemblers/cag/cag_style.json' 2024-07-24T00:03:34,797 warning: no files found matching 'indra/assemblers/cag/cag_template.js' 2024-07-24T00:03:34,798 adding license file 'LICENSE' 2024-07-24T00:03:34,817 writing manifest file '/tmp/pip-pip-egg-info-m7gj3slh/indra.egg-info/SOURCES.txt' 2024-07-24T00:03:34,930 Preparing metadata (setup.py): finished with status 'done' 2024-07-24T00:03:34,936 Source in /tmp/pip-wheel-jnk90ann/indra_1e190aeeca8e4a9398efa54396116cf8 has version 1.23.0, which satisfies requirement indra==1.23.0 from https://files.pythonhosted.org/packages/f0/78/7b0ee979d80496c23d88014b81d4bac15b53ca4be7e131219a17233fb58b/indra-1.23.0.tar.gz 2024-07-24T00:03:34,937 Removed indra==1.23.0 from https://files.pythonhosted.org/packages/f0/78/7b0ee979d80496c23d88014b81d4bac15b53ca4be7e131219a17233fb58b/indra-1.23.0.tar.gz from build tracker '/tmp/pip-build-tracker-_i9n8m8p' 2024-07-24T00:03:35,013 Created temporary directory: /tmp/pip-unpack-y3i5r8id 2024-07-24T00:03:35,014 Created temporary directory: /tmp/pip-unpack-aizhes7r 2024-07-24T00:03:35,015 Building wheels for collected packages: indra 2024-07-24T00:03:35,019 Created temporary directory: /tmp/pip-wheel-1b493nqj 2024-07-24T00:03:35,020 Building wheel for indra (setup.py): started 2024-07-24T00:03:35,021 Destination directory: /tmp/pip-wheel-1b493nqj 2024-07-24T00:03:35,022 Running command python setup.py bdist_wheel 2024-07-24T00:03:36,106 running bdist_wheel 2024-07-24T00:03:36,251 running build 2024-07-24T00:03:36,252 running build_py 2024-07-24T00:03:36,282 creating build 2024-07-24T00:03:36,283 creating build/lib 2024-07-24T00:03:36,284 creating build/lib/indra 2024-07-24T00:03:36,285 copying indra/config.py -> build/lib/indra 2024-07-24T00:03:36,288 copying indra/java_vm.py -> build/lib/indra 2024-07-24T00:03:36,290 copying indra/__init__.py -> build/lib/indra 2024-07-24T00:03:36,292 creating build/lib/indra/assemblers 2024-07-24T00:03:36,293 copying indra/assemblers/__init__.py -> build/lib/indra/assemblers 2024-07-24T00:03:36,295 creating build/lib/indra/assemblers/cx 2024-07-24T00:03:36,296 copying indra/assemblers/cx/__init__.py -> build/lib/indra/assemblers/cx 2024-07-24T00:03:36,297 copying indra/assemblers/cx/assembler.py -> build/lib/indra/assemblers/cx 2024-07-24T00:03:36,300 copying indra/assemblers/cx/hub_layout.py -> build/lib/indra/assemblers/cx 2024-07-24T00:03:36,303 creating build/lib/indra/assemblers/cyjs 2024-07-24T00:03:36,304 copying indra/assemblers/cyjs/__init__.py -> build/lib/indra/assemblers/cyjs 2024-07-24T00:03:36,306 copying indra/assemblers/cyjs/assembler.py -> build/lib/indra/assemblers/cyjs 2024-07-24T00:03:36,309 creating build/lib/indra/assemblers/english 2024-07-24T00:03:36,310 copying indra/assemblers/english/__init__.py -> build/lib/indra/assemblers/english 2024-07-24T00:03:36,311 copying indra/assemblers/english/assembler.py -> build/lib/indra/assemblers/english 2024-07-24T00:03:36,315 creating build/lib/indra/assemblers/graph 2024-07-24T00:03:36,316 copying indra/assemblers/graph/__init__.py -> build/lib/indra/assemblers/graph 2024-07-24T00:03:36,318 copying indra/assemblers/graph/assembler.py -> build/lib/indra/assemblers/graph 2024-07-24T00:03:36,321 creating build/lib/indra/assemblers/html 2024-07-24T00:03:36,321 copying indra/assemblers/html/__init__.py -> build/lib/indra/assemblers/html 2024-07-24T00:03:36,323 copying indra/assemblers/html/assembler.py -> build/lib/indra/assemblers/html 2024-07-24T00:03:36,327 creating build/lib/indra/assemblers/index_card 2024-07-24T00:03:36,328 copying indra/assemblers/index_card/__init__.py -> build/lib/indra/assemblers/index_card 2024-07-24T00:03:36,330 copying indra/assemblers/index_card/assembler.py -> build/lib/indra/assemblers/index_card 2024-07-24T00:03:36,333 creating build/lib/indra/assemblers/indranet 2024-07-24T00:03:36,334 copying indra/assemblers/indranet/__init__.py -> build/lib/indra/assemblers/indranet 2024-07-24T00:03:36,335 copying indra/assemblers/indranet/assembler.py -> build/lib/indra/assemblers/indranet 2024-07-24T00:03:36,338 copying indra/assemblers/indranet/net.py -> build/lib/indra/assemblers/indranet 2024-07-24T00:03:36,341 creating build/lib/indra/assemblers/kami 2024-07-24T00:03:36,342 copying indra/assemblers/kami/__init__.py -> build/lib/indra/assemblers/kami 2024-07-24T00:03:36,344 copying indra/assemblers/kami/assembler.py -> build/lib/indra/assemblers/kami 2024-07-24T00:03:36,347 creating build/lib/indra/assemblers/pybel 2024-07-24T00:03:36,348 copying indra/assemblers/pybel/__init__.py -> build/lib/indra/assemblers/pybel 2024-07-24T00:03:36,350 copying indra/assemblers/pybel/assembler.py -> build/lib/indra/assemblers/pybel 2024-07-24T00:03:36,354 creating build/lib/indra/assemblers/pysb 2024-07-24T00:03:36,355 copying indra/assemblers/pysb/preassembler.py -> build/lib/indra/assemblers/pysb 2024-07-24T00:03:36,357 copying indra/assemblers/pysb/kappa_util.py -> build/lib/indra/assemblers/pysb 2024-07-24T00:03:36,359 copying indra/assemblers/pysb/bmi_wrapper.py -> build/lib/indra/assemblers/pysb 2024-07-24T00:03:36,362 copying indra/assemblers/pysb/common.py -> build/lib/indra/assemblers/pysb 2024-07-24T00:03:36,363 copying indra/assemblers/pysb/base_agents.py -> build/lib/indra/assemblers/pysb 2024-07-24T00:03:36,366 copying indra/assemblers/pysb/__init__.py -> build/lib/indra/assemblers/pysb 2024-07-24T00:03:36,367 copying indra/assemblers/pysb/assembler.py -> build/lib/indra/assemblers/pysb 2024-07-24T00:03:36,372 copying indra/assemblers/pysb/sites.py -> build/lib/indra/assemblers/pysb 2024-07-24T00:03:36,374 copying indra/assemblers/pysb/export.py -> build/lib/indra/assemblers/pysb 2024-07-24T00:03:36,377 creating build/lib/indra/assemblers/sbgn 2024-07-24T00:03:36,378 copying indra/assemblers/sbgn/__init__.py -> build/lib/indra/assemblers/sbgn 2024-07-24T00:03:36,379 copying indra/assemblers/sbgn/assembler.py -> build/lib/indra/assemblers/sbgn 2024-07-24T00:03:36,383 creating build/lib/indra/assemblers/sif 2024-07-24T00:03:36,383 copying indra/assemblers/sif/__init__.py -> build/lib/indra/assemblers/sif 2024-07-24T00:03:36,385 copying indra/assemblers/sif/assembler.py -> build/lib/indra/assemblers/sif 2024-07-24T00:03:36,388 creating build/lib/indra/assemblers/tsv 2024-07-24T00:03:36,389 copying indra/assemblers/tsv/__init__.py -> build/lib/indra/assemblers/tsv 2024-07-24T00:03:36,391 copying indra/assemblers/tsv/assembler.py -> build/lib/indra/assemblers/tsv 2024-07-24T00:03:36,393 creating build/lib/indra/belief 2024-07-24T00:03:36,394 copying indra/belief/__init__.py -> build/lib/indra/belief 2024-07-24T00:03:36,397 copying indra/belief/skl.py -> build/lib/indra/belief 2024-07-24T00:03:36,401 creating build/lib/indra/benchmarks 2024-07-24T00:03:36,401 copying indra/benchmarks/benchmark_db_coverage.py -> build/lib/indra/benchmarks 2024-07-24T00:03:36,403 copying indra/benchmarks/__init__.py -> build/lib/indra/benchmarks 2024-07-24T00:03:36,405 copying indra/benchmarks/benchmark_trips.py -> build/lib/indra/benchmarks 2024-07-24T00:03:36,408 creating build/lib/indra/databases 2024-07-24T00:03:36,409 copying indra/databases/chembl_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,411 copying indra/databases/identifiers.py -> build/lib/indra/databases 2024-07-24T00:03:36,414 copying indra/databases/uniprot_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,416 copying indra/databases/ndex_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,418 copying indra/databases/obo_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,420 copying indra/databases/mirbase_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,422 copying indra/databases/chebi_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,424 copying indra/databases/go_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,426 copying indra/databases/ec_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,428 copying indra/databases/mesh_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,430 copying indra/databases/__init__.py -> build/lib/indra/databases 2024-07-24T00:03:36,432 copying indra/databases/ido_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,434 copying indra/databases/pubchem_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,436 copying indra/databases/rgd_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,437 copying indra/databases/drugbank_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,439 copying indra/databases/hgnc_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,442 copying indra/databases/efo_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,443 copying indra/databases/owl_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,446 copying indra/databases/taxonomy_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,447 copying indra/databases/hp_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,449 copying indra/databases/mondo_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,451 copying indra/databases/cbio_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,453 copying indra/databases/lincs_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,456 copying indra/databases/context_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,457 copying indra/databases/mgi_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,459 copying indra/databases/doid_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,461 copying indra/databases/bioregistry_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,463 copying indra/databases/biolookup_client.py -> build/lib/indra/databases 2024-07-24T00:03:36,465 creating build/lib/indra/explanation 2024-07-24T00:03:36,466 copying indra/explanation/reporting.py -> build/lib/indra/explanation 2024-07-24T00:03:36,469 copying indra/explanation/__init__.py -> build/lib/indra/explanation 2024-07-24T00:03:36,471 creating build/lib/indra/explanation/model_checker 2024-07-24T00:03:36,472 copying indra/explanation/model_checker/signed_graph.py -> build/lib/indra/explanation/model_checker 2024-07-24T00:03:36,474 copying indra/explanation/model_checker/unsigned_graph.py -> build/lib/indra/explanation/model_checker 2024-07-24T00:03:36,476 copying indra/explanation/model_checker/pysb.py -> build/lib/indra/explanation/model_checker 2024-07-24T00:03:36,479 copying indra/explanation/model_checker/pybel.py -> build/lib/indra/explanation/model_checker 2024-07-24T00:03:36,481 copying indra/explanation/model_checker/model_checker.py -> build/lib/indra/explanation/model_checker 2024-07-24T00:03:36,483 copying indra/explanation/model_checker/__init__.py -> build/lib/indra/explanation/model_checker 2024-07-24T00:03:36,485 creating build/lib/indra/explanation/pathfinding 2024-07-24T00:03:36,486 copying indra/explanation/pathfinding/util.py -> build/lib/indra/explanation/pathfinding 2024-07-24T00:03:36,488 copying indra/explanation/pathfinding/pathfinding.py -> build/lib/indra/explanation/pathfinding 2024-07-24T00:03:36,491 copying indra/explanation/pathfinding/__init__.py -> build/lib/indra/explanation/pathfinding 2024-07-24T00:03:36,493 creating build/lib/indra/literature 2024-07-24T00:03:36,494 copying indra/literature/biorxiv_client.py -> build/lib/indra/literature 2024-07-24T00:03:36,497 copying indra/literature/newsapi_client.py -> build/lib/indra/literature 2024-07-24T00:03:36,498 copying indra/literature/coci_client.py -> build/lib/indra/literature 2024-07-24T00:03:36,500 copying indra/literature/__init__.py -> build/lib/indra/literature 2024-07-24T00:03:36,502 copying indra/literature/s3_client.py -> build/lib/indra/literature 2024-07-24T00:03:36,505 copying indra/literature/pmc_client.py -> build/lib/indra/literature 2024-07-24T00:03:36,508 copying indra/literature/elsevier_client.py -> build/lib/indra/literature 2024-07-24T00:03:36,511 copying indra/literature/pubmed_client.py -> build/lib/indra/literature 2024-07-24T00:03:36,514 copying indra/literature/adeft_tools.py -> build/lib/indra/literature 2024-07-24T00:03:36,516 copying indra/literature/crossref_client.py -> build/lib/indra/literature 2024-07-24T00:03:36,519 creating build/lib/indra/mechlinker 2024-07-24T00:03:36,520 copying indra/mechlinker/__init__.py -> build/lib/indra/mechlinker 2024-07-24T00:03:36,523 creating build/lib/indra/ontology 2024-07-24T00:03:36,524 copying indra/ontology/__init__.py -> build/lib/indra/ontology 2024-07-24T00:03:36,526 copying indra/ontology/standardize.py -> build/lib/indra/ontology 2024-07-24T00:03:36,528 copying indra/ontology/ontology_graph.py -> build/lib/indra/ontology 2024-07-24T00:03:36,531 creating build/lib/indra/ontology/bio 2024-07-24T00:03:36,532 copying indra/ontology/bio/ontology.py -> build/lib/indra/ontology/bio 2024-07-24T00:03:36,535 copying indra/ontology/bio/__init__.py -> build/lib/indra/ontology/bio 2024-07-24T00:03:36,537 copying indra/ontology/bio/__main__.py -> build/lib/indra/ontology/bio 2024-07-24T00:03:36,539 creating build/lib/indra/ontology/virtual 2024-07-24T00:03:36,541 copying indra/ontology/virtual/ontology.py -> build/lib/indra/ontology/virtual 2024-07-24T00:03:36,542 copying indra/ontology/virtual/__init__.py -> build/lib/indra/ontology/virtual 2024-07-24T00:03:36,545 creating build/lib/indra/ontology/app 2024-07-24T00:03:36,546 copying indra/ontology/app/app.py -> build/lib/indra/ontology/app 2024-07-24T00:03:36,548 copying indra/ontology/app/__init__.py -> build/lib/indra/ontology/app 2024-07-24T00:03:36,550 creating build/lib/indra/pipeline 2024-07-24T00:03:36,551 copying indra/pipeline/decorators.py -> build/lib/indra/pipeline 2024-07-24T00:03:36,553 copying indra/pipeline/__init__.py -> build/lib/indra/pipeline 2024-07-24T00:03:36,554 copying indra/pipeline/pipeline.py -> build/lib/indra/pipeline 2024-07-24T00:03:36,558 creating build/lib/indra/preassembler 2024-07-24T00:03:36,559 copying indra/preassembler/custom_preassembly.py -> build/lib/indra/preassembler 2024-07-24T00:03:36,561 copying indra/preassembler/__init__.py -> build/lib/indra/preassembler 2024-07-24T00:03:36,564 copying indra/preassembler/sitemapper.py -> build/lib/indra/preassembler 2024-07-24T00:03:36,567 copying indra/preassembler/refinement.py -> build/lib/indra/preassembler 2024-07-24T00:03:36,570 creating build/lib/indra/preassembler/grounding_mapper 2024-07-24T00:03:36,570 copying indra/preassembler/grounding_mapper/mapper.py -> build/lib/indra/preassembler/grounding_mapper 2024-07-24T00:03:36,573 copying indra/preassembler/grounding_mapper/disambiguate.py -> build/lib/indra/preassembler/grounding_mapper 2024-07-24T00:03:36,575 copying indra/preassembler/grounding_mapper/__init__.py -> build/lib/indra/preassembler/grounding_mapper 2024-07-24T00:03:36,577 copying indra/preassembler/grounding_mapper/gilda.py -> build/lib/indra/preassembler/grounding_mapper 2024-07-24T00:03:36,579 copying indra/preassembler/grounding_mapper/analysis.py -> build/lib/indra/preassembler/grounding_mapper 2024-07-24T00:03:36,582 creating build/lib/indra/sources 2024-07-24T00:03:36,582 copying indra/sources/utils.py -> build/lib/indra/sources 2024-07-24T00:03:36,584 copying indra/sources/biogrid.py -> build/lib/indra/sources 2024-07-24T00:03:36,587 copying indra/sources/__init__.py -> build/lib/indra/sources 2024-07-24T00:03:36,589 creating build/lib/indra/sources/acsn 2024-07-24T00:03:36,589 copying indra/sources/acsn/processor.py -> build/lib/indra/sources/acsn 2024-07-24T00:03:36,591 copying indra/sources/acsn/__init__.py -> build/lib/indra/sources/acsn 2024-07-24T00:03:36,593 copying indra/sources/acsn/api.py -> build/lib/indra/sources/acsn 2024-07-24T00:03:36,595 creating build/lib/indra/sources/bel 2024-07-24T00:03:36,596 copying indra/sources/bel/processor.py -> build/lib/indra/sources/bel 2024-07-24T00:03:36,599 copying indra/sources/bel/__init__.py -> build/lib/indra/sources/bel 2024-07-24T00:03:36,600 copying indra/sources/bel/api.py -> build/lib/indra/sources/bel 2024-07-24T00:03:36,603 creating build/lib/indra/sources/biofactoid 2024-07-24T00:03:36,604 copying indra/sources/biofactoid/processor.py -> build/lib/indra/sources/biofactoid 2024-07-24T00:03:36,606 copying indra/sources/biofactoid/__init__.py -> build/lib/indra/sources/biofactoid 2024-07-24T00:03:36,608 copying indra/sources/biofactoid/api.py -> build/lib/indra/sources/biofactoid 2024-07-24T00:03:36,610 creating build/lib/indra/sources/biopax 2024-07-24T00:03:36,611 copying indra/sources/biopax/processor.py -> build/lib/indra/sources/biopax 2024-07-24T00:03:36,615 copying indra/sources/biopax/__init__.py -> build/lib/indra/sources/biopax 2024-07-24T00:03:36,616 copying indra/sources/biopax/api.py -> build/lib/indra/sources/biopax 2024-07-24T00:03:36,619 creating build/lib/indra/sources/creeds 2024-07-24T00:03:36,620 copying indra/sources/creeds/processor.py -> build/lib/indra/sources/creeds 2024-07-24T00:03:36,622 copying indra/sources/creeds/__init__.py -> build/lib/indra/sources/creeds 2024-07-24T00:03:36,624 copying indra/sources/creeds/api.py -> build/lib/indra/sources/creeds 2024-07-24T00:03:36,626 creating build/lib/indra/sources/crog 2024-07-24T00:03:36,627 copying indra/sources/crog/processor.py -> build/lib/indra/sources/crog 2024-07-24T00:03:36,629 copying indra/sources/crog/__init__.py -> build/lib/indra/sources/crog 2024-07-24T00:03:36,631 copying indra/sources/crog/api.py -> build/lib/indra/sources/crog 2024-07-24T00:03:36,633 copying indra/sources/crog/__main__.py -> build/lib/indra/sources/crog 2024-07-24T00:03:36,635 creating build/lib/indra/sources/ctd 2024-07-24T00:03:36,636 copying indra/sources/ctd/processor.py -> build/lib/indra/sources/ctd 2024-07-24T00:03:36,638 copying indra/sources/ctd/__init__.py -> build/lib/indra/sources/ctd 2024-07-24T00:03:36,640 copying indra/sources/ctd/api.py -> build/lib/indra/sources/ctd 2024-07-24T00:03:36,642 creating build/lib/indra/sources/dgi 2024-07-24T00:03:36,643 copying indra/sources/dgi/processor.py -> build/lib/indra/sources/dgi 2024-07-24T00:03:36,646 copying indra/sources/dgi/__init__.py -> build/lib/indra/sources/dgi 2024-07-24T00:03:36,647 copying indra/sources/dgi/api.py -> build/lib/indra/sources/dgi 2024-07-24T00:03:36,649 copying indra/sources/dgi/__main__.py -> build/lib/indra/sources/dgi 2024-07-24T00:03:36,651 creating build/lib/indra/sources/drugbank 2024-07-24T00:03:36,652 copying indra/sources/drugbank/processor.py -> build/lib/indra/sources/drugbank 2024-07-24T00:03:36,654 copying indra/sources/drugbank/__init__.py -> build/lib/indra/sources/drugbank 2024-07-24T00:03:36,656 copying indra/sources/drugbank/api.py -> build/lib/indra/sources/drugbank 2024-07-24T00:03:36,658 creating build/lib/indra/sources/eidos 2024-07-24T00:03:36,659 copying indra/sources/eidos/server.py -> build/lib/indra/sources/eidos 2024-07-24T00:03:36,661 copying indra/sources/eidos/reader.py -> build/lib/indra/sources/eidos 2024-07-24T00:03:36,663 copying indra/sources/eidos/processor.py -> build/lib/indra/sources/eidos 2024-07-24T00:03:36,665 copying indra/sources/eidos/__init__.py -> build/lib/indra/sources/eidos 2024-07-24T00:03:36,668 copying indra/sources/eidos/bio_processor.py -> build/lib/indra/sources/eidos 2024-07-24T00:03:36,669 copying indra/sources/eidos/client.py -> build/lib/indra/sources/eidos 2024-07-24T00:03:36,671 copying indra/sources/eidos/api.py -> build/lib/indra/sources/eidos 2024-07-24T00:03:36,673 copying indra/sources/eidos/cli.py -> build/lib/indra/sources/eidos 2024-07-24T00:03:36,676 creating build/lib/indra/sources/geneways 2024-07-24T00:03:36,677 copying indra/sources/geneways/actionmention_parser.py -> build/lib/indra/sources/geneways 2024-07-24T00:03:36,679 copying indra/sources/geneways/action_parser.py -> build/lib/indra/sources/geneways 2024-07-24T00:03:36,681 copying indra/sources/geneways/processor.py -> build/lib/indra/sources/geneways 2024-07-24T00:03:36,683 copying indra/sources/geneways/__init__.py -> build/lib/indra/sources/geneways 2024-07-24T00:03:36,684 copying indra/sources/geneways/api.py -> build/lib/indra/sources/geneways 2024-07-24T00:03:36,686 copying indra/sources/geneways/symbols_parser.py -> build/lib/indra/sources/geneways 2024-07-24T00:03:36,688 copying indra/sources/geneways/find_full_text_sentence.py -> build/lib/indra/sources/geneways 2024-07-24T00:03:36,691 creating build/lib/indra/sources/gnbr 2024-07-24T00:03:36,691 copying indra/sources/gnbr/processor.py -> build/lib/indra/sources/gnbr 2024-07-24T00:03:36,694 copying indra/sources/gnbr/__init__.py -> build/lib/indra/sources/gnbr 2024-07-24T00:03:36,696 copying indra/sources/gnbr/api.py -> build/lib/indra/sources/gnbr 2024-07-24T00:03:36,698 creating build/lib/indra/sources/hprd 2024-07-24T00:03:36,699 copying indra/sources/hprd/processor.py -> build/lib/indra/sources/hprd 2024-07-24T00:03:36,702 copying indra/sources/hprd/__init__.py -> build/lib/indra/sources/hprd 2024-07-24T00:03:36,704 copying indra/sources/hprd/api.py -> build/lib/indra/sources/hprd 2024-07-24T00:03:36,706 creating build/lib/indra/sources/hypothesis 2024-07-24T00:03:36,707 copying indra/sources/hypothesis/processor.py -> build/lib/indra/sources/hypothesis 2024-07-24T00:03:36,710 copying indra/sources/hypothesis/annotator.py -> build/lib/indra/sources/hypothesis 2024-07-24T00:03:36,711 copying indra/sources/hypothesis/__init__.py -> build/lib/indra/sources/hypothesis 2024-07-24T00:03:36,713 copying indra/sources/hypothesis/api.py -> build/lib/indra/sources/hypothesis 2024-07-24T00:03:36,716 creating build/lib/indra/sources/index_cards 2024-07-24T00:03:36,717 copying indra/sources/index_cards/processor.py -> build/lib/indra/sources/index_cards 2024-07-24T00:03:36,719 copying indra/sources/index_cards/__init__.py -> build/lib/indra/sources/index_cards 2024-07-24T00:03:36,722 creating build/lib/indra/sources/indra_db_rest 2024-07-24T00:03:36,723 copying indra/sources/indra_db_rest/util.py -> build/lib/indra/sources/indra_db_rest 2024-07-24T00:03:36,725 copying indra/sources/indra_db_rest/processor.py -> build/lib/indra/sources/indra_db_rest 2024-07-24T00:03:36,727 copying indra/sources/indra_db_rest/__init__.py -> build/lib/indra/sources/indra_db_rest 2024-07-24T00:03:36,729 copying indra/sources/indra_db_rest/api.py -> build/lib/indra/sources/indra_db_rest 2024-07-24T00:03:36,731 copying indra/sources/indra_db_rest/query.py -> build/lib/indra/sources/indra_db_rest 2024-07-24T00:03:36,738 copying indra/sources/indra_db_rest/query_results.py -> build/lib/indra/sources/indra_db_rest 2024-07-24T00:03:36,740 copying indra/sources/indra_db_rest/exceptions.py -> build/lib/indra/sources/indra_db_rest 2024-07-24T00:03:36,742 creating build/lib/indra/sources/isi 2024-07-24T00:03:36,743 copying indra/sources/isi/processor.py -> build/lib/indra/sources/isi 2024-07-24T00:03:36,745 copying indra/sources/isi/preprocessor.py -> build/lib/indra/sources/isi 2024-07-24T00:03:36,747 copying indra/sources/isi/__init__.py -> build/lib/indra/sources/isi 2024-07-24T00:03:36,749 copying indra/sources/isi/api.py -> build/lib/indra/sources/isi 2024-07-24T00:03:36,751 copying indra/sources/isi/experiments.py -> build/lib/indra/sources/isi 2024-07-24T00:03:36,754 creating build/lib/indra/sources/minerva 2024-07-24T00:03:36,754 copying indra/sources/minerva/minerva_client.py -> build/lib/indra/sources/minerva 2024-07-24T00:03:36,756 copying indra/sources/minerva/processor.py -> build/lib/indra/sources/minerva 2024-07-24T00:03:36,758 copying indra/sources/minerva/id_mapping.py -> build/lib/indra/sources/minerva 2024-07-24T00:03:36,760 copying indra/sources/minerva/__init__.py -> build/lib/indra/sources/minerva 2024-07-24T00:03:36,762 copying indra/sources/minerva/api.py -> build/lib/indra/sources/minerva 2024-07-24T00:03:36,764 creating build/lib/indra/sources/ndex_cx 2024-07-24T00:03:36,765 copying indra/sources/ndex_cx/processor.py -> build/lib/indra/sources/ndex_cx 2024-07-24T00:03:36,767 copying indra/sources/ndex_cx/__init__.py -> build/lib/indra/sources/ndex_cx 2024-07-24T00:03:36,769 copying indra/sources/ndex_cx/api.py -> build/lib/indra/sources/ndex_cx 2024-07-24T00:03:36,771 creating build/lib/indra/sources/reach 2024-07-24T00:03:36,772 copying indra/sources/reach/reader.py -> build/lib/indra/sources/reach 2024-07-24T00:03:36,774 copying indra/sources/reach/processor.py -> build/lib/indra/sources/reach 2024-07-24T00:03:36,776 copying indra/sources/reach/__init__.py -> build/lib/indra/sources/reach 2024-07-24T00:03:36,778 copying indra/sources/reach/api.py -> build/lib/indra/sources/reach 2024-07-24T00:03:36,781 creating build/lib/indra/sources/omnipath 2024-07-24T00:03:36,782 copying indra/sources/omnipath/processor.py -> build/lib/indra/sources/omnipath 2024-07-24T00:03:36,785 copying indra/sources/omnipath/__init__.py -> build/lib/indra/sources/omnipath 2024-07-24T00:03:36,786 copying indra/sources/omnipath/api.py -> build/lib/indra/sources/omnipath 2024-07-24T00:03:36,789 creating build/lib/indra/sources/phosphoelm 2024-07-24T00:03:36,790 copying indra/sources/phosphoelm/phosphoelm_mapping.py -> build/lib/indra/sources/phosphoelm 2024-07-24T00:03:36,792 copying indra/sources/phosphoelm/processor.py -> build/lib/indra/sources/phosphoelm 2024-07-24T00:03:36,794 copying indra/sources/phosphoelm/__init__.py -> build/lib/indra/sources/phosphoelm 2024-07-24T00:03:36,796 copying indra/sources/phosphoelm/api.py -> build/lib/indra/sources/phosphoelm 2024-07-24T00:03:36,798 creating build/lib/indra/sources/rlimsp 2024-07-24T00:03:36,799 copying indra/sources/rlimsp/processor.py -> build/lib/indra/sources/rlimsp 2024-07-24T00:03:36,802 copying indra/sources/rlimsp/__init__.py -> build/lib/indra/sources/rlimsp 2024-07-24T00:03:36,803 copying indra/sources/rlimsp/api.py -> build/lib/indra/sources/rlimsp 2024-07-24T00:03:36,806 creating build/lib/indra/sources/semrep 2024-07-24T00:03:36,807 copying indra/sources/semrep/processor.py -> build/lib/indra/sources/semrep 2024-07-24T00:03:36,809 copying indra/sources/semrep/__init__.py -> build/lib/indra/sources/semrep 2024-07-24T00:03:36,811 copying indra/sources/semrep/api.py -> build/lib/indra/sources/semrep 2024-07-24T00:03:36,813 creating build/lib/indra/sources/signor 2024-07-24T00:03:36,814 copying indra/sources/signor/processor.py -> build/lib/indra/sources/signor 2024-07-24T00:03:36,817 copying indra/sources/signor/__init__.py -> build/lib/indra/sources/signor 2024-07-24T00:03:36,818 copying indra/sources/signor/api.py -> build/lib/indra/sources/signor 2024-07-24T00:03:36,821 creating build/lib/indra/sources/sparser 2024-07-24T00:03:36,821 copying indra/sources/sparser/processor.py -> build/lib/indra/sources/sparser 2024-07-24T00:03:36,824 copying indra/sources/sparser/xml_processor.py -> build/lib/indra/sources/sparser 2024-07-24T00:03:36,826 copying indra/sources/sparser/__init__.py -> build/lib/indra/sources/sparser 2024-07-24T00:03:36,828 copying indra/sources/sparser/api.py -> build/lib/indra/sources/sparser 2024-07-24T00:03:36,830 creating build/lib/indra/sources/tas 2024-07-24T00:03:36,831 copying indra/sources/tas/processor.py -> build/lib/indra/sources/tas 2024-07-24T00:03:36,833 copying indra/sources/tas/__init__.py -> build/lib/indra/sources/tas 2024-07-24T00:03:36,835 copying indra/sources/tas/api.py -> build/lib/indra/sources/tas 2024-07-24T00:03:36,838 creating build/lib/indra/sources/tees 2024-07-24T00:03:36,838 copying indra/sources/tees/processor.py -> build/lib/indra/sources/tees 2024-07-24T00:03:36,841 copying indra/sources/tees/__init__.py -> build/lib/indra/sources/tees 2024-07-24T00:03:36,842 copying indra/sources/tees/api.py -> build/lib/indra/sources/tees 2024-07-24T00:03:36,845 copying indra/sources/tees/parse_tees.py -> build/lib/indra/sources/tees 2024-07-24T00:03:36,847 creating build/lib/indra/sources/trips 2024-07-24T00:03:36,848 copying indra/sources/trips/analyze_ekbs.py -> build/lib/indra/sources/trips 2024-07-24T00:03:36,851 copying indra/sources/trips/processor.py -> build/lib/indra/sources/trips 2024-07-24T00:03:36,855 copying indra/sources/trips/__init__.py -> build/lib/indra/sources/trips 2024-07-24T00:03:36,856 copying indra/sources/trips/client.py -> build/lib/indra/sources/trips 2024-07-24T00:03:36,858 copying indra/sources/trips/api.py -> build/lib/indra/sources/trips 2024-07-24T00:03:36,860 copying indra/sources/trips/drum_reader.py -> build/lib/indra/sources/trips 2024-07-24T00:03:36,863 creating build/lib/indra/sources/trrust 2024-07-24T00:03:36,864 copying indra/sources/trrust/processor.py -> build/lib/indra/sources/trrust 2024-07-24T00:03:36,866 copying indra/sources/trrust/__init__.py -> build/lib/indra/sources/trrust 2024-07-24T00:03:36,867 copying indra/sources/trrust/api.py -> build/lib/indra/sources/trrust 2024-07-24T00:03:36,870 creating build/lib/indra/sources/ubibrowser 2024-07-24T00:03:36,871 copying indra/sources/ubibrowser/processor.py -> build/lib/indra/sources/ubibrowser 2024-07-24T00:03:36,872 copying indra/sources/ubibrowser/__init__.py -> build/lib/indra/sources/ubibrowser 2024-07-24T00:03:36,874 copying indra/sources/ubibrowser/api.py -> build/lib/indra/sources/ubibrowser 2024-07-24T00:03:36,876 creating build/lib/indra/sources/virhostnet 2024-07-24T00:03:36,877 copying indra/sources/virhostnet/processor.py -> build/lib/indra/sources/virhostnet 2024-07-24T00:03:36,880 copying indra/sources/virhostnet/__init__.py -> build/lib/indra/sources/virhostnet 2024-07-24T00:03:36,881 copying indra/sources/virhostnet/api.py -> build/lib/indra/sources/virhostnet 2024-07-24T00:03:36,884 creating build/lib/indra/resources 2024-07-24T00:03:36,885 copying indra/resources/update_resources.py -> build/lib/indra/resources 2024-07-24T00:03:36,888 copying indra/resources/add_grounding_resources_from_csv.py -> build/lib/indra/resources 2024-07-24T00:03:36,890 copying indra/resources/__init__.py -> build/lib/indra/resources 2024-07-24T00:03:36,891 copying indra/resources/greek_alphabet.py -> build/lib/indra/resources 2024-07-24T00:03:36,894 creating build/lib/indra/statements 2024-07-24T00:03:36,895 copying indra/statements/util.py -> build/lib/indra/statements 2024-07-24T00:03:36,897 copying indra/statements/delta.py -> build/lib/indra/statements 2024-07-24T00:03:36,899 copying indra/statements/resources.py -> build/lib/indra/statements 2024-07-24T00:03:36,901 copying indra/statements/evidence.py -> build/lib/indra/statements 2024-07-24T00:03:36,902 copying indra/statements/context.py -> build/lib/indra/statements 2024-07-24T00:03:36,905 copying indra/statements/io.py -> build/lib/indra/statements 2024-07-24T00:03:36,907 copying indra/statements/__init__.py -> build/lib/indra/statements 2024-07-24T00:03:36,908 copying indra/statements/validate.py -> build/lib/indra/statements 2024-07-24T00:03:36,911 copying indra/statements/concept.py -> build/lib/indra/statements 2024-07-24T00:03:36,912 copying indra/statements/statements.py -> build/lib/indra/statements 2024-07-24T00:03:36,916 copying indra/statements/agent.py -> build/lib/indra/statements 2024-07-24T00:03:36,921 creating build/lib/indra/tests 2024-07-24T00:03:36,922 copying indra/tests/test_biofactoid.py -> build/lib/indra/tests 2024-07-24T00:03:36,923 copying indra/tests/util.py -> build/lib/indra/tests 2024-07-24T00:03:36,925 copying indra/tests/test_ndex_client.py -> build/lib/indra/tests 2024-07-24T00:03:36,927 copying indra/tests/test_acsn.py -> build/lib/indra/tests 2024-07-24T00:03:36,928 copying indra/tests/test_cbio_client.py -> build/lib/indra/tests 2024-07-24T00:03:36,930 copying indra/tests/test_pubmed_client.py -> build/lib/indra/tests 2024-07-24T00:03:36,932 copying indra/tests/test_belief_sklearn.py -> build/lib/indra/tests 2024-07-24T00:03:36,935 copying indra/tests/test_sparser.py -> build/lib/indra/tests 2024-07-24T00:03:36,936 copying indra/tests/test_pybel_api.py -> build/lib/indra/tests 2024-07-24T00:03:36,939 copying indra/tests/test_rest_api.py -> build/lib/indra/tests 2024-07-24T00:03:36,942 copying indra/tests/test_chebi_client.py -> build/lib/indra/tests 2024-07-24T00:03:36,944 copying indra/tests/test_drugbank.py -> build/lib/indra/tests 2024-07-24T00:03:36,945 copying indra/tests/test_gnbr.py -> build/lib/indra/tests 2024-07-24T00:03:36,947 copying indra/tests/test_tees.py -> build/lib/indra/tests 2024-07-24T00:03:36,949 copying indra/tests/test_s3_client.py -> build/lib/indra/tests 2024-07-24T00:03:36,952 copying indra/tests/test_kappa_util.py -> build/lib/indra/tests 2024-07-24T00:03:36,953 copying indra/tests/test_grounding_resources.py -> build/lib/indra/tests 2024-07-24T00:03:36,955 copying indra/tests/test_biolookup_client.py -> build/lib/indra/tests 2024-07-24T00:03:36,956 copying indra/tests/test_phosphoelm_processor.py -> build/lib/indra/tests 2024-07-24T00:03:36,958 copying indra/tests/test_rlimsp.py -> build/lib/indra/tests 2024-07-24T00:03:36,960 copying indra/tests/test_pysb_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:36,963 copying indra/tests/test_statements.py -> build/lib/indra/tests 2024-07-24T00:03:36,966 copying indra/tests/test_belief_engine.py -> build/lib/indra/tests 2024-07-24T00:03:36,968 copying indra/tests/test_tsv_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:36,970 copying indra/tests/test_hgnc_client.py -> build/lib/indra/tests 2024-07-24T00:03:36,972 copying indra/tests/test_custom_preassembly.py -> build/lib/indra/tests 2024-07-24T00:03:36,973 copying indra/tests/test_rgd_client.py -> build/lib/indra/tests 2024-07-24T00:03:36,975 copying indra/tests/test_pybel_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:36,977 copying indra/tests/test_benchmarks.py -> build/lib/indra/tests 2024-07-24T00:03:36,979 copying indra/tests/test_incremental_model.py -> build/lib/indra/tests 2024-07-24T00:03:36,981 copying indra/tests/test_db_rest.py -> build/lib/indra/tests 2024-07-24T00:03:36,983 copying indra/tests/test_adaptive_assembly.py -> build/lib/indra/tests 2024-07-24T00:03:36,985 copying indra/tests/test_mesh.py -> build/lib/indra/tests 2024-07-24T00:03:36,987 copying indra/tests/test_biopax.py -> build/lib/indra/tests 2024-07-24T00:03:36,989 copying indra/tests/test_medscan.py -> build/lib/indra/tests 2024-07-24T00:03:36,991 copying indra/tests/test_statement_validate.py -> build/lib/indra/tests 2024-07-24T00:03:36,993 copying indra/tests/test_uniprot_client.py -> build/lib/indra/tests 2024-07-24T00:03:36,995 copying indra/tests/test_omnipath.py -> build/lib/indra/tests 2024-07-24T00:03:36,996 copying indra/tests/test_go_client.py -> build/lib/indra/tests 2024-07-24T00:03:36,998 copying indra/tests/test_rasmachine.py -> build/lib/indra/tests 2024-07-24T00:03:37,000 copying indra/tests/test_identifiers.py -> build/lib/indra/tests 2024-07-24T00:03:37,002 copying indra/tests/test_lincs_client.py -> build/lib/indra/tests 2024-07-24T00:03:37,003 copying indra/tests/test_mirbase_client.py -> build/lib/indra/tests 2024-07-24T00:03:37,005 copying indra/tests/test_signor.py -> build/lib/indra/tests 2024-07-24T00:03:37,007 copying indra/tests/test_cx_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:37,009 copying indra/tests/test_crossref_client.py -> build/lib/indra/tests 2024-07-24T00:03:37,011 copying indra/tests/test_assemble_corpus.py -> build/lib/indra/tests 2024-07-24T00:03:37,013 copying indra/tests/__init__.py -> build/lib/indra/tests 2024-07-24T00:03:37,015 copying indra/tests/test_kami_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:37,017 copying indra/tests/test_groundingmapper.py -> build/lib/indra/tests 2024-07-24T00:03:37,019 copying indra/tests/test_eidos.py -> build/lib/indra/tests 2024-07-24T00:03:37,021 copying indra/tests/test_coci_client.py -> build/lib/indra/tests 2024-07-24T00:03:37,022 copying indra/tests/test_ndex_cx_processor.py -> build/lib/indra/tests 2024-07-24T00:03:37,024 copying indra/tests/test_trrust.py -> build/lib/indra/tests 2024-07-24T00:03:37,025 copying indra/tests/test_taxonomy_client.py -> build/lib/indra/tests 2024-07-24T00:03:37,027 copying indra/tests/test_util.py -> build/lib/indra/tests 2024-07-24T00:03:37,028 copying indra/tests/test_english_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:37,031 copying indra/tests/test_sif_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:37,032 copying indra/tests/test_minerva.py -> build/lib/indra/tests 2024-07-24T00:03:37,034 copying indra/tests/test_fix_invalidities.py -> build/lib/indra/tests 2024-07-24T00:03:37,036 copying indra/tests/test_elsevier_client.py -> build/lib/indra/tests 2024-07-24T00:03:37,038 copying indra/tests/test_adeft_tools.py -> build/lib/indra/tests 2024-07-24T00:03:37,039 copying indra/tests/test_cyjs_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:37,042 copying indra/tests/test_statements_serialization.py -> build/lib/indra/tests 2024-07-24T00:03:37,044 copying indra/tests/test_literature.py -> build/lib/indra/tests 2024-07-24T00:03:37,046 copying indra/tests/test_sparser_xml.py -> build/lib/indra/tests 2024-07-24T00:03:37,048 copying indra/tests/test_reach.py -> build/lib/indra/tests 2024-07-24T00:03:37,050 copying indra/tests/make_mock_ontology.py -> build/lib/indra/tests 2024-07-24T00:03:37,052 copying indra/tests/test_ctd.py -> build/lib/indra/tests 2024-07-24T00:03:37,054 copying indra/tests/test_chembl_client.py -> build/lib/indra/tests 2024-07-24T00:03:37,056 copying indra/tests/test_bioregistry.py -> build/lib/indra/tests 2024-07-24T00:03:37,058 copying indra/tests/conftest.py -> build/lib/indra/tests 2024-07-24T00:03:37,059 copying indra/tests/test_mgi_client.py -> build/lib/indra/tests 2024-07-24T00:03:37,061 copying indra/tests/test_mechlinker.py -> build/lib/indra/tests 2024-07-24T00:03:37,063 copying indra/tests/test_pipeline.py -> build/lib/indra/tests 2024-07-24T00:03:37,065 copying indra/tests/test_model_checker.py -> build/lib/indra/tests 2024-07-24T00:03:37,069 copying indra/tests/test_graph_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:37,071 copying indra/tests/test_preassembler.py -> build/lib/indra/tests 2024-07-24T00:03:37,073 copying indra/tests/test_bmi_wrapper.py -> build/lib/indra/tests 2024-07-24T00:03:37,075 copying indra/tests/test_pmc_client.py -> build/lib/indra/tests 2024-07-24T00:03:37,077 copying indra/tests/test_isi.py -> build/lib/indra/tests 2024-07-24T00:03:37,079 copying indra/tests/test_tas.py -> build/lib/indra/tests 2024-07-24T00:03:37,080 copying indra/tests/test_pubchem_client.py -> build/lib/indra/tests 2024-07-24T00:03:37,082 copying indra/tests/test_indranet_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:37,084 copying indra/tests/test_virhostnet.py -> build/lib/indra/tests 2024-07-24T00:03:37,086 copying indra/tests/test_index_card_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:37,088 copying indra/tests/test_hypothesis.py -> build/lib/indra/tests 2024-07-24T00:03:37,090 copying indra/tests/test_json_schema.py -> build/lib/indra/tests 2024-07-24T00:03:37,092 copying indra/tests/test_sitemapper.py -> build/lib/indra/tests 2024-07-24T00:03:37,094 copying indra/tests/test_sbgn_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:37,096 copying indra/tests/test_hprd.py -> build/lib/indra/tests 2024-07-24T00:03:37,098 copying indra/tests/test_docs_code.py -> build/lib/indra/tests 2024-07-24T00:03:37,100 copying indra/tests/test_biogrid.py -> build/lib/indra/tests 2024-07-24T00:03:37,102 copying indra/tests/test_geneways.py -> build/lib/indra/tests 2024-07-24T00:03:37,104 copying indra/tests/test_delta.py -> build/lib/indra/tests 2024-07-24T00:03:37,106 copying indra/tests/test_pathfinding.py -> build/lib/indra/tests 2024-07-24T00:03:37,109 copying indra/tests/test_html_assembler.py -> build/lib/indra/tests 2024-07-24T00:03:37,111 copying indra/tests/test_trips_ekbs.py -> build/lib/indra/tests 2024-07-24T00:03:37,113 copying indra/tests/test_context.py -> build/lib/indra/tests 2024-07-24T00:03:37,115 copying indra/tests/test_ontology.py -> build/lib/indra/tests 2024-07-24T00:03:37,117 copying indra/tests/test_trips.py -> build/lib/indra/tests 2024-07-24T00:03:37,119 copying indra/tests/test_expand_families.py -> build/lib/indra/tests 2024-07-24T00:03:37,122 creating build/lib/indra/tests/test_obo_clients 2024-07-24T00:03:37,123 copying indra/tests/test_obo_clients/test_efo_client.py -> build/lib/indra/tests/test_obo_clients 2024-07-24T00:03:37,124 copying indra/tests/test_obo_clients/test_doid_client.py -> build/lib/indra/tests/test_obo_clients 2024-07-24T00:03:37,126 copying indra/tests/test_obo_clients/__init__.py -> build/lib/indra/tests/test_obo_clients 2024-07-24T00:03:37,128 copying indra/tests/test_obo_clients/test_ec_client.py -> build/lib/indra/tests/test_obo_clients 2024-07-24T00:03:37,130 copying indra/tests/test_obo_clients/test_mondo_client.py -> build/lib/indra/tests/test_obo_clients 2024-07-24T00:03:37,131 copying indra/tests/test_obo_clients/test_ido_client.py -> build/lib/indra/tests/test_obo_clients 2024-07-24T00:03:37,133 copying indra/tests/test_obo_clients/test_hp_client.py -> build/lib/indra/tests/test_obo_clients 2024-07-24T00:03:37,136 creating build/lib/indra/tools 2024-07-24T00:03:37,137 copying indra/tools/analyze_ontology.py -> build/lib/indra/tools 2024-07-24T00:03:37,139 copying indra/tools/assemble_corpus.py -> build/lib/indra/tools 2024-07-24T00:03:37,142 copying indra/tools/mechlinker_queries.py -> build/lib/indra/tools 2024-07-24T00:03:37,144 copying indra/tools/fix_invalidities.py -> build/lib/indra/tools 2024-07-24T00:03:37,146 copying indra/tools/expand_families.py -> build/lib/indra/tools 2024-07-24T00:03:37,148 copying indra/tools/incremental_model.py -> build/lib/indra/tools 2024-07-24T00:03:37,150 copying indra/tools/__init__.py -> build/lib/indra/tools 2024-07-24T00:03:37,152 copying indra/tools/extract_grounding_map.py -> build/lib/indra/tools 2024-07-24T00:03:37,154 copying indra/tools/adaptive_assembly.py -> build/lib/indra/tools 2024-07-24T00:03:37,155 copying indra/tools/executable_subnetwork.py -> build/lib/indra/tools 2024-07-24T00:03:37,157 copying indra/tools/gene_network.py -> build/lib/indra/tools 2024-07-24T00:03:37,159 copying indra/tools/hypothesis_annotator.py -> build/lib/indra/tools 2024-07-24T00:03:37,162 creating build/lib/indra/tools/machine 2024-07-24T00:03:37,163 copying indra/tools/machine/config.py -> build/lib/indra/tools/machine 2024-07-24T00:03:37,164 copying indra/tools/machine/gmail_client.py -> build/lib/indra/tools/machine 2024-07-24T00:03:37,166 copying indra/tools/machine/__init__.py -> build/lib/indra/tools/machine 2024-07-24T00:03:37,168 copying indra/tools/machine/machine.py -> build/lib/indra/tools/machine 2024-07-24T00:03:37,170 copying indra/tools/machine/cli.py -> build/lib/indra/tools/machine 2024-07-24T00:03:37,172 copying indra/tools/machine/twitter_client.py -> build/lib/indra/tools/machine 2024-07-24T00:03:37,173 copying indra/tools/machine/__main__.py -> build/lib/indra/tools/machine 2024-07-24T00:03:37,175 creating build/lib/indra/util 2024-07-24T00:03:37,176 copying indra/util/repickle_stmts.py -> build/lib/indra/util 2024-07-24T00:03:37,178 copying indra/util/plot_formatting.py -> build/lib/indra/util 2024-07-24T00:03:37,180 copying indra/util/_require_python3.py -> build/lib/indra/util 2024-07-24T00:03:37,181 copying indra/util/__init__.py -> build/lib/indra/util 2024-07-24T00:03:37,183 copying indra/util/get_version.py -> build/lib/indra/util 2024-07-24T00:03:37,185 copying indra/util/aws.py -> build/lib/indra/util 2024-07-24T00:03:37,187 copying indra/util/nested_dict.py -> build/lib/indra/util 2024-07-24T00:03:37,189 copying indra/util/statement_presentation.py -> build/lib/indra/util 2024-07-24T00:03:37,192 copying indra/util/multiprocessing_traceback.py -> build/lib/indra/util 2024-07-24T00:03:37,194 copying indra/util/perm_cache.py -> build/lib/indra/util 2024-07-24T00:03:37,196 running egg_info 2024-07-24T00:03:37,222 writing indra.egg-info/PKG-INFO 2024-07-24T00:03:37,247 writing dependency_links to indra.egg-info/dependency_links.txt 2024-07-24T00:03:37,249 writing entry points to indra.egg-info/entry_points.txt 2024-07-24T00:03:37,261 writing requirements to indra.egg-info/requires.txt 2024-07-24T00:03:37,262 writing top-level names to indra.egg-info/top_level.txt 2024-07-24T00:03:37,351 reading manifest file 'indra.egg-info/SOURCES.txt' 2024-07-24T00:03:37,366 reading manifest template 'MANIFEST.in' 2024-07-24T00:03:37,387 warning: no files found matching 'indra/tools/reading/util/reach_conf_fmt.txt' 2024-07-24T00:03:37,387 warning: no files found matching 'indra/assemblers/cag/cag_style.json' 2024-07-24T00:03:37,388 warning: no files found matching 'indra/assemblers/cag/cag_template.js' 2024-07-24T00:03:37,389 adding license file 'LICENSE' 2024-07-24T00:03:37,423 writing manifest file 'indra.egg-info/SOURCES.txt' 2024-07-24T00:03:37,431 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'indra.assemblers.html.templates.indra' is absent from the `packages` configuration. 2024-07-24T00:03:37,432 !! 2024-07-24T00:03:37,434 ******************************************************************************** 2024-07-24T00:03:37,434 ############################ 2024-07-24T00:03:37,435 # Package would be ignored # 2024-07-24T00:03:37,436 ############################ 2024-07-24T00:03:37,436 Python recognizes 'indra.assemblers.html.templates.indra' as an importable package[^1], 2024-07-24T00:03:37,437 but it is absent from setuptools' `packages` configuration. 2024-07-24T00:03:37,438 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-24T00:03:37,439 package, please make sure that 'indra.assemblers.html.templates.indra' is explicitly added 2024-07-24T00:03:37,440 to the `packages` configuration field. 2024-07-24T00:03:37,442 Alternatively, you can also rely on setuptools' discovery methods 2024-07-24T00:03:37,442 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-24T00:03:37,443 instead of `find_packages(...)`/`find:`). 2024-07-24T00:03:37,443 You can read more about "package discovery" on setuptools documentation page: 2024-07-24T00:03:37,444 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-24T00:03:37,445 If you don't want 'indra.assemblers.html.templates.indra' to be distributed and are 2024-07-24T00:03:37,446 already explicitly excluding 'indra.assemblers.html.templates.indra' via 2024-07-24T00:03:37,446 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-24T00:03:37,447 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-24T00:03:37,448 combination with a more fine grained `package-data` configuration. 2024-07-24T00:03:37,449 You can read more about "package data files" on setuptools documentation page: 2024-07-24T00:03:37,450 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-24T00:03:37,452 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-24T00:03:37,453 even if it does not contain any `.py` files. 2024-07-24T00:03:37,453 On the other hand, currently there is no concept of package data 2024-07-24T00:03:37,454 directory, all directories are treated like packages. 2024-07-24T00:03:37,455 ******************************************************************************** 2024-07-24T00:03:37,456 !! 2024-07-24T00:03:37,457 check.warn(importable) 2024-07-24T00:03:37,457 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'indra.benchmarks.bioprocesses' is absent from the `packages` configuration. 2024-07-24T00:03:37,458 !! 2024-07-24T00:03:37,460 ******************************************************************************** 2024-07-24T00:03:37,460 ############################ 2024-07-24T00:03:37,461 # Package would be ignored # 2024-07-24T00:03:37,462 ############################ 2024-07-24T00:03:37,462 Python recognizes 'indra.benchmarks.bioprocesses' as an importable package[^1], 2024-07-24T00:03:37,463 but it is absent from setuptools' `packages` configuration. 2024-07-24T00:03:37,464 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-24T00:03:37,465 package, please make sure that 'indra.benchmarks.bioprocesses' is explicitly added 2024-07-24T00:03:37,466 to the `packages` configuration field. 2024-07-24T00:03:37,467 Alternatively, you can also rely on setuptools' discovery methods 2024-07-24T00:03:37,468 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-24T00:03:37,469 instead of `find_packages(...)`/`find:`). 2024-07-24T00:03:37,470 You can read more about "package discovery" on setuptools documentation page: 2024-07-24T00:03:37,471 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-24T00:03:37,473 If you don't want 'indra.benchmarks.bioprocesses' to be distributed and are 2024-07-24T00:03:37,473 already explicitly excluding 'indra.benchmarks.bioprocesses' via 2024-07-24T00:03:37,474 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-24T00:03:37,475 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-24T00:03:37,476 combination with a more fine grained `package-data` configuration. 2024-07-24T00:03:37,477 You can read more about "package data files" on setuptools documentation page: 2024-07-24T00:03:37,478 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-24T00:03:37,481 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-24T00:03:37,481 even if it does not contain any `.py` files. 2024-07-24T00:03:37,482 On the other hand, currently there is no concept of package data 2024-07-24T00:03:37,482 directory, all directories are treated like packages. 2024-07-24T00:03:37,483 ******************************************************************************** 2024-07-24T00:03:37,484 !! 2024-07-24T00:03:37,484 check.warn(importable) 2024-07-24T00:03:37,485 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'indra.benchmarks.phosphorylations' is absent from the `packages` configuration. 2024-07-24T00:03:37,485 !! 2024-07-24T00:03:37,486 ******************************************************************************** 2024-07-24T00:03:37,487 ############################ 2024-07-24T00:03:37,488 # Package would be ignored # 2024-07-24T00:03:37,488 ############################ 2024-07-24T00:03:37,489 Python recognizes 'indra.benchmarks.phosphorylations' as an importable package[^1], 2024-07-24T00:03:37,489 but it is absent from setuptools' `packages` configuration. 2024-07-24T00:03:37,490 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-24T00:03:37,491 package, please make sure that 'indra.benchmarks.phosphorylations' is explicitly added 2024-07-24T00:03:37,492 to the `packages` configuration field. 2024-07-24T00:03:37,493 Alternatively, you can also rely on setuptools' discovery methods 2024-07-24T00:03:37,494 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-24T00:03:37,495 instead of `find_packages(...)`/`find:`). 2024-07-24T00:03:37,497 You can read more about "package discovery" on setuptools documentation page: 2024-07-24T00:03:37,498 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-24T00:03:37,500 If you don't want 'indra.benchmarks.phosphorylations' to be distributed and are 2024-07-24T00:03:37,500 already explicitly excluding 'indra.benchmarks.phosphorylations' via 2024-07-24T00:03:37,501 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-24T00:03:37,501 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-24T00:03:37,502 combination with a more fine grained `package-data` configuration. 2024-07-24T00:03:37,503 You can read more about "package data files" on setuptools documentation page: 2024-07-24T00:03:37,504 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-24T00:03:37,505 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-24T00:03:37,506 even if it does not contain any `.py` files. 2024-07-24T00:03:37,506 On the other hand, currently there is no concept of package data 2024-07-24T00:03:37,507 directory, all directories are treated like packages. 2024-07-24T00:03:37,507 ******************************************************************************** 2024-07-24T00:03:37,509 !! 2024-07-24T00:03:37,509 check.warn(importable) 2024-07-24T00:03:37,510 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'indra.resources.famplex' is absent from the `packages` configuration. 2024-07-24T00:03:37,510 !! 2024-07-24T00:03:37,511 ******************************************************************************** 2024-07-24T00:03:37,512 ############################ 2024-07-24T00:03:37,512 # Package would be ignored # 2024-07-24T00:03:37,513 ############################ 2024-07-24T00:03:37,514 Python recognizes 'indra.resources.famplex' as an importable package[^1], 2024-07-24T00:03:37,514 but it is absent from setuptools' `packages` configuration. 2024-07-24T00:03:37,516 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-24T00:03:37,516 package, please make sure that 'indra.resources.famplex' is explicitly added 2024-07-24T00:03:37,516 to the `packages` configuration field. 2024-07-24T00:03:37,517 Alternatively, you can also rely on setuptools' discovery methods 2024-07-24T00:03:37,518 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-24T00:03:37,518 instead of `find_packages(...)`/`find:`). 2024-07-24T00:03:37,519 You can read more about "package discovery" on setuptools documentation page: 2024-07-24T00:03:37,520 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-24T00:03:37,521 If you don't want 'indra.resources.famplex' to be distributed and are 2024-07-24T00:03:37,521 already explicitly excluding 'indra.resources.famplex' via 2024-07-24T00:03:37,522 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-24T00:03:37,522 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-24T00:03:37,523 combination with a more fine grained `package-data` configuration. 2024-07-24T00:03:37,524 You can read more about "package data files" on setuptools documentation page: 2024-07-24T00:03:37,524 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-24T00:03:37,526 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-24T00:03:37,526 even if it does not contain any `.py` files. 2024-07-24T00:03:37,527 On the other hand, currently there is no concept of package data 2024-07-24T00:03:37,527 directory, all directories are treated like packages. 2024-07-24T00:03:37,528 ******************************************************************************** 2024-07-24T00:03:37,529 !! 2024-07-24T00:03:37,530 check.warn(importable) 2024-07-24T00:03:37,531 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'indra.resources.grounding' is absent from the `packages` configuration. 2024-07-24T00:03:37,531 !! 2024-07-24T00:03:37,536 ******************************************************************************** 2024-07-24T00:03:37,552 ############################ 2024-07-24T00:03:37,572 # Package would be ignored # 2024-07-24T00:03:37,574 ############################ 2024-07-24T00:03:37,574 Python recognizes 'indra.resources.grounding' as an importable package[^1], 2024-07-24T00:03:37,575 but it is absent from setuptools' `packages` configuration. 2024-07-24T00:03:37,576 This leads to an ambiguous overall configuration. If you want to distribute this 2024-07-24T00:03:37,577 package, please make sure that 'indra.resources.grounding' is explicitly added 2024-07-24T00:03:37,577 to the `packages` configuration field. 2024-07-24T00:03:37,578 Alternatively, you can also rely on setuptools' discovery methods 2024-07-24T00:03:37,579 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-07-24T00:03:37,579 instead of `find_packages(...)`/`find:`). 2024-07-24T00:03:37,580 You can read more about "package discovery" on setuptools documentation page: 2024-07-24T00:03:37,582 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-07-24T00:03:37,583 If you don't want 'indra.resources.grounding' to be distributed and are 2024-07-24T00:03:37,584 already explicitly excluding 'indra.resources.grounding' via 2024-07-24T00:03:37,584 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-07-24T00:03:37,585 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-07-24T00:03:37,586 combination with a more fine grained `package-data` configuration. 2024-07-24T00:03:37,587 You can read more about "package data files" on setuptools documentation page: 2024-07-24T00:03:37,587 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-07-24T00:03:37,589 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-07-24T00:03:37,589 even if it does not contain any `.py` files. 2024-07-24T00:03:37,590 On the other hand, currently there is no concept of package data 2024-07-24T00:03:37,590 directory, all directories are treated like packages. 2024-07-24T00:03:37,590 ******************************************************************************** 2024-07-24T00:03:37,591 !! 2024-07-24T00:03:37,592 check.warn(importable) 2024-07-24T00:03:37,592 creating build/lib/indra/assemblers/html/templates 2024-07-24T00:03:37,593 creating build/lib/indra/assemblers/html/templates/indra 2024-07-24T00:03:37,593 copying indra/assemblers/html/templates/indra/statements_view.html -> build/lib/indra/assemblers/html/templates/indra 2024-07-24T00:03:37,593 copying indra/assemblers/html/templates/indra/template.html -> build/lib/indra/assemblers/html/templates/indra 2024-07-24T00:03:37,594 creating build/lib/indra/benchmarks/bioprocesses 2024-07-24T00:03:37,594 copying indra/benchmarks/bioprocesses/__init__.py -> build/lib/indra/benchmarks/bioprocesses 2024-07-24T00:03:37,595 copying indra/benchmarks/bioprocesses/__main__.py -> build/lib/indra/benchmarks/bioprocesses 2024-07-24T00:03:37,596 creating build/lib/indra/benchmarks/phosphorylations 2024-07-24T00:03:37,596 copying indra/benchmarks/phosphorylations/__init__.py -> build/lib/indra/benchmarks/phosphorylations 2024-07-24T00:03:37,597 copying indra/literature/pmids_auth_xml.txt -> build/lib/indra/literature 2024-07-24T00:03:37,597 copying indra/literature/pmids_fulltext.txt -> build/lib/indra/literature 2024-07-24T00:03:37,794 copying indra/literature/pmids_oa_txt.txt -> build/lib/indra/literature 2024-07-24T00:03:37,967 copying indra/literature/pmids_oa_xml.txt -> build/lib/indra/literature 2024-07-24T00:03:38,116 copying indra/sources/isi/isi_verb_to_indra_statement_type.tsv -> build/lib/indra/sources/isi 2024-07-24T00:03:38,118 copying indra/sources/reach/reach_rule_regexps.txt -> build/lib/indra/sources/reach 2024-07-24T00:03:38,120 copying indra/sources/semrep/Dockerfile -> build/lib/indra/sources/semrep 2024-07-24T00:03:38,122 copying indra/resources/README.txt -> build/lib/indra/resources 2024-07-24T00:03:38,124 copying indra/resources/amino_acids.tsv -> build/lib/indra/resources 2024-07-24T00:03:38,126 copying indra/resources/bel_chebi_map.tsv -> build/lib/indra/resources 2024-07-24T00:03:38,161 copying indra/resources/biomappings.tsv -> build/lib/indra/resources 2024-07-24T00:03:38,165 copying indra/resources/bioregistry.json -> build/lib/indra/resources 2024-07-24T00:03:38,169 copying indra/resources/cas_to_chebi.tsv -> build/lib/indra/resources 2024-07-24T00:03:38,180 copying indra/resources/chebi.json -> build/lib/indra/resources 2024-07-24T00:03:38,804 copying indra/resources/chebi_to_chembl.tsv -> build/lib/indra/resources 2024-07-24T00:03:38,822 copying indra/resources/chebi_to_pubchem.tsv -> build/lib/indra/resources 2024-07-24T00:03:38,858 copying indra/resources/chembl_tas.csv -> build/lib/indra/resources 2024-07-24T00:03:38,880 copying indra/resources/curated_site_map.csv -> build/lib/indra/resources 2024-07-24T00:03:38,882 copying indra/resources/db_refs_map.csv -> build/lib/indra/resources 2024-07-24T00:03:38,884 copying indra/resources/default_belief_probs.json -> build/lib/indra/resources 2024-07-24T00:03:38,886 copying indra/resources/default_config.ini -> build/lib/indra/resources 2024-07-24T00:03:38,888 copying indra/resources/doid.json -> build/lib/indra/resources 2024-07-24T00:03:38,968 copying indra/resources/drugbank_mappings.tsv -> build/lib/indra/resources 2024-07-24T00:03:38,988 copying indra/resources/eccode.json -> build/lib/indra/resources 2024-07-24T00:03:39,014 copying indra/resources/efo.json -> build/lib/indra/resources 2024-07-24T00:03:39,099 copying indra/resources/famplex_map.tsv -> build/lib/indra/resources 2024-07-24T00:03:39,102 copying indra/resources/go.json -> build/lib/indra/resources 2024-07-24T00:03:39,334 copying indra/resources/hgnc_entries.tsv -> build/lib/indra/resources 2024-07-24T00:03:39,431 copying indra/resources/hgnc_uniprot_preferred.csv -> build/lib/indra/resources 2024-07-24T00:03:39,433 copying indra/resources/hmdb_to_chebi.tsv -> build/lib/indra/resources 2024-07-24T00:03:39,437 copying indra/resources/hms_lincs_extra.tsv -> build/lib/indra/resources 2024-07-24T00:03:39,441 copying indra/resources/hp.json -> build/lib/indra/resources 2024-07-24T00:03:39,517 copying indra/resources/identifiers_patterns.json -> build/lib/indra/resources 2024-07-24T00:03:39,521 copying indra/resources/ido.json -> build/lib/indra/resources 2024-07-24T00:03:39,523 copying indra/resources/index_card_schema.json -> build/lib/indra/resources 2024-07-24T00:03:39,526 copying indra/resources/kinases.tsv -> build/lib/indra/resources 2024-07-24T00:03:39,528 copying indra/resources/lincs_proteins.json -> build/lib/indra/resources 2024-07-24T00:03:39,547 copying indra/resources/lincs_small_molecules.json -> build/lib/indra/resources 2024-07-24T00:03:39,561 copying indra/resources/lspci.tsv -> build/lib/indra/resources 2024-07-24T00:03:39,585 copying indra/resources/mesh_cas_mappings.tsv -> build/lib/indra/resources 2024-07-24T00:03:39,600 copying indra/resources/mesh_id_label_mappings.tsv -> build/lib/indra/resources 2024-07-24T00:03:39,677 copying indra/resources/mesh_mappings.tsv -> build/lib/indra/resources 2024-07-24T00:03:39,706 copying indra/resources/mesh_supp_id_label_mappings.tsv -> build/lib/indra/resources 2024-07-24T00:03:40,073 copying indra/resources/mgi_entries.tsv -> build/lib/indra/resources 2024-07-24T00:03:40,127 copying indra/resources/mirbase.tsv -> build/lib/indra/resources 2024-07-24T00:03:40,137 copying indra/resources/mondo.json -> build/lib/indra/resources 2024-07-24T00:03:40,334 copying indra/resources/ncit_allele_map.tsv -> build/lib/indra/resources 2024-07-24T00:03:40,337 copying indra/resources/ncit_map.tsv -> build/lib/indra/resources 2024-07-24T00:03:40,347 copying indra/resources/phosphatases.tsv -> build/lib/indra/resources 2024-07-24T00:03:40,349 copying indra/resources/pubchem_mesh_map.tsv -> build/lib/indra/resources 2024-07-24T00:03:40,368 copying indra/resources/pubmed_retractions.tsv -> build/lib/indra/resources 2024-07-24T00:03:40,373 copying indra/resources/ras_pathway_proteins.csv -> build/lib/indra/resources 2024-07-24T00:03:40,376 copying indra/resources/rgd_entries.tsv -> build/lib/indra/resources 2024-07-24T00:03:40,423 copying indra/resources/selventa_entries.tsv -> build/lib/indra/resources 2024-07-24T00:03:40,428 copying indra/resources/source_info.json -> build/lib/indra/resources 2024-07-24T00:03:40,430 copying indra/resources/source_mapping.json -> build/lib/indra/resources 2024-07-24T00:03:40,432 copying indra/resources/statements_schema.json -> build/lib/indra/resources 2024-07-24T00:03:40,435 copying indra/resources/transcription_factors.csv -> build/lib/indra/resources 2024-07-24T00:03:40,438 copying indra/resources/uniprot_subcell_loc.tsv -> build/lib/indra/resources 2024-07-24T00:03:40,441 creating build/lib/indra/resources/famplex 2024-07-24T00:03:40,442 copying indra/resources/famplex/entities.csv -> build/lib/indra/resources/famplex 2024-07-24T00:03:40,444 copying indra/resources/famplex/equivalences.csv -> build/lib/indra/resources/famplex 2024-07-24T00:03:40,447 copying indra/resources/famplex/gene_prefixes.csv -> build/lib/indra/resources/famplex 2024-07-24T00:03:40,450 copying indra/resources/famplex/grounding_map.csv -> build/lib/indra/resources/famplex 2024-07-24T00:03:40,454 copying indra/resources/famplex/relations.csv -> build/lib/indra/resources/famplex 2024-07-24T00:03:40,458 creating build/lib/indra/resources/grounding 2024-07-24T00:03:40,459 copying indra/resources/grounding/agents.json -> build/lib/indra/resources/grounding 2024-07-24T00:03:40,462 copying indra/resources/grounding/covid_grounding.csv -> build/lib/indra/resources/grounding 2024-07-24T00:03:40,464 copying indra/resources/grounding/extra_gmap_files.json -> build/lib/indra/resources/grounding 2024-07-24T00:03:40,466 copying indra/resources/grounding/gene_grounding.csv -> build/lib/indra/resources/grounding 2024-07-24T00:03:40,468 copying indra/resources/grounding/grounding_map.csv -> build/lib/indra/resources/grounding 2024-07-24T00:03:40,472 copying indra/resources/grounding/ignore.csv -> build/lib/indra/resources/grounding 2024-07-24T00:03:40,474 copying indra/resources/grounding/misgrounding_map.csv -> build/lib/indra/resources/grounding 2024-07-24T00:03:40,477 copying indra/tools/machine/default-config.yaml -> build/lib/indra/tools/machine 2024-07-24T00:03:40,535 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-07-24T00:03:40,536 !! 2024-07-24T00:03:40,537 ******************************************************************************** 2024-07-24T00:03:40,537 Please avoid running ``setup.py`` directly. 2024-07-24T00:03:40,538 Instead, use pypa/build, pypa/installer or other 2024-07-24T00:03:40,538 standards-based tools. 2024-07-24T00:03:40,539 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-07-24T00:03:40,539 ******************************************************************************** 2024-07-24T00:03:40,541 !! 2024-07-24T00:03:40,541 self.initialize_options() 2024-07-24T00:03:40,562 installing to build/bdist.linux-armv7l/wheel 2024-07-24T00:03:40,563 running install 2024-07-24T00:03:40,587 running install_lib 2024-07-24T00:03:40,614 creating build/bdist.linux-armv7l 2024-07-24T00:03:40,614 creating build/bdist.linux-armv7l/wheel 2024-07-24T00:03:40,616 creating build/bdist.linux-armv7l/wheel/indra 2024-07-24T00:03:40,618 creating build/bdist.linux-armv7l/wheel/indra/sources 2024-07-24T00:03:40,619 creating build/bdist.linux-armv7l/wheel/indra/sources/drugbank 2024-07-24T00:03:40,620 copying build/lib/indra/sources/drugbank/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/drugbank 2024-07-24T00:03:40,622 copying build/lib/indra/sources/drugbank/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/drugbank 2024-07-24T00:03:40,624 copying build/lib/indra/sources/drugbank/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/drugbank 2024-07-24T00:03:40,626 copying build/lib/indra/sources/utils.py -> build/bdist.linux-armv7l/wheel/indra/sources 2024-07-24T00:03:40,628 creating build/bdist.linux-armv7l/wheel/indra/sources/hprd 2024-07-24T00:03:40,629 copying build/lib/indra/sources/hprd/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/hprd 2024-07-24T00:03:40,631 copying build/lib/indra/sources/hprd/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/hprd 2024-07-24T00:03:40,633 copying build/lib/indra/sources/hprd/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/hprd 2024-07-24T00:03:40,636 creating build/bdist.linux-armv7l/wheel/indra/sources/geneways 2024-07-24T00:03:40,637 copying build/lib/indra/sources/geneways/actionmention_parser.py -> build/bdist.linux-armv7l/wheel/indra/sources/geneways 2024-07-24T00:03:40,639 copying build/lib/indra/sources/geneways/action_parser.py -> build/bdist.linux-armv7l/wheel/indra/sources/geneways 2024-07-24T00:03:40,641 copying build/lib/indra/sources/geneways/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/geneways 2024-07-24T00:03:40,643 copying build/lib/indra/sources/geneways/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/geneways 2024-07-24T00:03:40,645 copying build/lib/indra/sources/geneways/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/geneways 2024-07-24T00:03:40,646 copying build/lib/indra/sources/geneways/symbols_parser.py -> build/bdist.linux-armv7l/wheel/indra/sources/geneways 2024-07-24T00:03:40,648 copying build/lib/indra/sources/geneways/find_full_text_sentence.py -> build/bdist.linux-armv7l/wheel/indra/sources/geneways 2024-07-24T00:03:40,651 creating build/bdist.linux-armv7l/wheel/indra/sources/indra_db_rest 2024-07-24T00:03:40,651 copying build/lib/indra/sources/indra_db_rest/util.py -> build/bdist.linux-armv7l/wheel/indra/sources/indra_db_rest 2024-07-24T00:03:40,654 copying build/lib/indra/sources/indra_db_rest/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/indra_db_rest 2024-07-24T00:03:40,656 copying build/lib/indra/sources/indra_db_rest/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/indra_db_rest 2024-07-24T00:03:40,658 copying build/lib/indra/sources/indra_db_rest/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/indra_db_rest 2024-07-24T00:03:40,660 copying build/lib/indra/sources/indra_db_rest/query.py -> build/bdist.linux-armv7l/wheel/indra/sources/indra_db_rest 2024-07-24T00:03:40,663 copying build/lib/indra/sources/indra_db_rest/query_results.py -> build/bdist.linux-armv7l/wheel/indra/sources/indra_db_rest 2024-07-24T00:03:40,665 copying build/lib/indra/sources/indra_db_rest/exceptions.py -> build/bdist.linux-armv7l/wheel/indra/sources/indra_db_rest 2024-07-24T00:03:40,667 creating build/bdist.linux-armv7l/wheel/indra/sources/gnbr 2024-07-24T00:03:40,668 copying build/lib/indra/sources/gnbr/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/gnbr 2024-07-24T00:03:40,670 copying build/lib/indra/sources/gnbr/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/gnbr 2024-07-24T00:03:40,672 copying build/lib/indra/sources/gnbr/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/gnbr 2024-07-24T00:03:40,675 creating build/bdist.linux-armv7l/wheel/indra/sources/ctd 2024-07-24T00:03:40,675 copying build/lib/indra/sources/ctd/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/ctd 2024-07-24T00:03:40,678 copying build/lib/indra/sources/ctd/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/ctd 2024-07-24T00:03:40,679 copying build/lib/indra/sources/ctd/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/ctd 2024-07-24T00:03:40,682 creating build/bdist.linux-armv7l/wheel/indra/sources/phosphoelm 2024-07-24T00:03:40,683 copying build/lib/indra/sources/phosphoelm/phosphoelm_mapping.py -> build/bdist.linux-armv7l/wheel/indra/sources/phosphoelm 2024-07-24T00:03:40,685 copying build/lib/indra/sources/phosphoelm/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/phosphoelm 2024-07-24T00:03:40,687 copying build/lib/indra/sources/phosphoelm/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/phosphoelm 2024-07-24T00:03:40,689 copying build/lib/indra/sources/phosphoelm/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/phosphoelm 2024-07-24T00:03:40,691 creating build/bdist.linux-armv7l/wheel/indra/sources/reach 2024-07-24T00:03:40,692 copying build/lib/indra/sources/reach/reader.py -> build/bdist.linux-armv7l/wheel/indra/sources/reach 2024-07-24T00:03:40,694 copying build/lib/indra/sources/reach/reach_rule_regexps.txt -> build/bdist.linux-armv7l/wheel/indra/sources/reach 2024-07-24T00:03:40,696 copying build/lib/indra/sources/reach/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/reach 2024-07-24T00:03:40,699 copying build/lib/indra/sources/reach/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/reach 2024-07-24T00:03:40,701 copying build/lib/indra/sources/reach/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/reach 2024-07-24T00:03:40,704 creating build/bdist.linux-armv7l/wheel/indra/sources/eidos 2024-07-24T00:03:40,705 copying build/lib/indra/sources/eidos/server.py -> build/bdist.linux-armv7l/wheel/indra/sources/eidos 2024-07-24T00:03:40,707 copying build/lib/indra/sources/eidos/reader.py -> build/bdist.linux-armv7l/wheel/indra/sources/eidos 2024-07-24T00:03:40,710 copying build/lib/indra/sources/eidos/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/eidos 2024-07-24T00:03:40,712 copying build/lib/indra/sources/eidos/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/eidos 2024-07-24T00:03:40,714 copying build/lib/indra/sources/eidos/bio_processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/eidos 2024-07-24T00:03:40,716 copying build/lib/indra/sources/eidos/client.py -> build/bdist.linux-armv7l/wheel/indra/sources/eidos 2024-07-24T00:03:40,718 copying build/lib/indra/sources/eidos/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/eidos 2024-07-24T00:03:40,720 copying build/lib/indra/sources/eidos/cli.py -> build/bdist.linux-armv7l/wheel/indra/sources/eidos 2024-07-24T00:03:40,722 creating build/bdist.linux-armv7l/wheel/indra/sources/tas 2024-07-24T00:03:40,723 copying build/lib/indra/sources/tas/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/tas 2024-07-24T00:03:40,725 copying build/lib/indra/sources/tas/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/tas 2024-07-24T00:03:40,727 copying build/lib/indra/sources/tas/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/tas 2024-07-24T00:03:40,729 copying build/lib/indra/sources/biogrid.py -> build/bdist.linux-armv7l/wheel/indra/sources 2024-07-24T00:03:40,731 creating build/bdist.linux-armv7l/wheel/indra/sources/ndex_cx 2024-07-24T00:03:40,732 copying build/lib/indra/sources/ndex_cx/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/ndex_cx 2024-07-24T00:03:40,735 copying build/lib/indra/sources/ndex_cx/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/ndex_cx 2024-07-24T00:03:40,736 copying build/lib/indra/sources/ndex_cx/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/ndex_cx 2024-07-24T00:03:40,738 creating build/bdist.linux-armv7l/wheel/indra/sources/acsn 2024-07-24T00:03:40,739 copying build/lib/indra/sources/acsn/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/acsn 2024-07-24T00:03:40,742 copying build/lib/indra/sources/acsn/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/acsn 2024-07-24T00:03:40,743 copying build/lib/indra/sources/acsn/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/acsn 2024-07-24T00:03:40,746 creating build/bdist.linux-armv7l/wheel/indra/sources/bel 2024-07-24T00:03:40,746 copying build/lib/indra/sources/bel/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/bel 2024-07-24T00:03:40,750 copying build/lib/indra/sources/bel/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/bel 2024-07-24T00:03:40,751 copying build/lib/indra/sources/bel/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/bel 2024-07-24T00:03:40,753 copying build/lib/indra/sources/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources 2024-07-24T00:03:40,756 creating build/bdist.linux-armv7l/wheel/indra/sources/tees 2024-07-24T00:03:40,757 copying build/lib/indra/sources/tees/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/tees 2024-07-24T00:03:40,759 copying build/lib/indra/sources/tees/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/tees 2024-07-24T00:03:40,761 copying build/lib/indra/sources/tees/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/tees 2024-07-24T00:03:40,764 copying build/lib/indra/sources/tees/parse_tees.py -> build/bdist.linux-armv7l/wheel/indra/sources/tees 2024-07-24T00:03:40,766 creating build/bdist.linux-armv7l/wheel/indra/sources/virhostnet 2024-07-24T00:03:40,767 copying build/lib/indra/sources/virhostnet/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/virhostnet 2024-07-24T00:03:40,770 copying build/lib/indra/sources/virhostnet/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/virhostnet 2024-07-24T00:03:40,771 copying build/lib/indra/sources/virhostnet/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/virhostnet 2024-07-24T00:03:40,774 creating build/bdist.linux-armv7l/wheel/indra/sources/isi 2024-07-24T00:03:40,775 copying build/lib/indra/sources/isi/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/isi 2024-07-24T00:03:40,777 copying build/lib/indra/sources/isi/preprocessor.py -> build/bdist.linux-armv7l/wheel/indra/sources/isi 2024-07-24T00:03:40,779 copying build/lib/indra/sources/isi/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/isi 2024-07-24T00:03:40,780 copying build/lib/indra/sources/isi/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/isi 2024-07-24T00:03:40,783 copying build/lib/indra/sources/isi/isi_verb_to_indra_statement_type.tsv -> build/bdist.linux-armv7l/wheel/indra/sources/isi 2024-07-24T00:03:40,784 copying build/lib/indra/sources/isi/experiments.py -> build/bdist.linux-armv7l/wheel/indra/sources/isi 2024-07-24T00:03:40,787 creating build/bdist.linux-armv7l/wheel/indra/sources/hypothesis 2024-07-24T00:03:40,787 copying build/lib/indra/sources/hypothesis/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/hypothesis 2024-07-24T00:03:40,790 copying build/lib/indra/sources/hypothesis/annotator.py -> build/bdist.linux-armv7l/wheel/indra/sources/hypothesis 2024-07-24T00:03:40,792 copying build/lib/indra/sources/hypothesis/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/hypothesis 2024-07-24T00:03:40,794 copying build/lib/indra/sources/hypothesis/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/hypothesis 2024-07-24T00:03:40,796 creating build/bdist.linux-armv7l/wheel/indra/sources/sparser 2024-07-24T00:03:40,797 copying build/lib/indra/sources/sparser/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/sparser 2024-07-24T00:03:40,799 copying build/lib/indra/sources/sparser/xml_processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/sparser 2024-07-24T00:03:40,802 copying build/lib/indra/sources/sparser/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/sparser 2024-07-24T00:03:40,803 copying build/lib/indra/sources/sparser/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/sparser 2024-07-24T00:03:40,806 creating build/bdist.linux-armv7l/wheel/indra/sources/ubibrowser 2024-07-24T00:03:40,807 copying build/lib/indra/sources/ubibrowser/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/ubibrowser 2024-07-24T00:03:40,809 copying build/lib/indra/sources/ubibrowser/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/ubibrowser 2024-07-24T00:03:40,811 copying build/lib/indra/sources/ubibrowser/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/ubibrowser 2024-07-24T00:03:40,813 creating build/bdist.linux-armv7l/wheel/indra/sources/creeds 2024-07-24T00:03:40,814 copying build/lib/indra/sources/creeds/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/creeds 2024-07-24T00:03:40,817 copying build/lib/indra/sources/creeds/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/creeds 2024-07-24T00:03:40,818 copying build/lib/indra/sources/creeds/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/creeds 2024-07-24T00:03:40,821 creating build/bdist.linux-armv7l/wheel/indra/sources/omnipath 2024-07-24T00:03:40,822 copying build/lib/indra/sources/omnipath/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/omnipath 2024-07-24T00:03:40,824 copying build/lib/indra/sources/omnipath/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/omnipath 2024-07-24T00:03:40,826 copying build/lib/indra/sources/omnipath/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/omnipath 2024-07-24T00:03:40,828 creating build/bdist.linux-armv7l/wheel/indra/sources/rlimsp 2024-07-24T00:03:40,829 copying build/lib/indra/sources/rlimsp/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/rlimsp 2024-07-24T00:03:40,831 copying build/lib/indra/sources/rlimsp/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/rlimsp 2024-07-24T00:03:40,834 copying build/lib/indra/sources/rlimsp/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/rlimsp 2024-07-24T00:03:40,836 creating build/bdist.linux-armv7l/wheel/indra/sources/biofactoid 2024-07-24T00:03:40,837 copying build/lib/indra/sources/biofactoid/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/biofactoid 2024-07-24T00:03:40,839 copying build/lib/indra/sources/biofactoid/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/biofactoid 2024-07-24T00:03:40,841 copying build/lib/indra/sources/biofactoid/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/biofactoid 2024-07-24T00:03:40,843 creating build/bdist.linux-armv7l/wheel/indra/sources/biopax 2024-07-24T00:03:40,844 copying build/lib/indra/sources/biopax/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/biopax 2024-07-24T00:03:40,847 copying build/lib/indra/sources/biopax/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/biopax 2024-07-24T00:03:40,848 copying build/lib/indra/sources/biopax/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/biopax 2024-07-24T00:03:40,851 creating build/bdist.linux-armv7l/wheel/indra/sources/signor 2024-07-24T00:03:40,851 copying build/lib/indra/sources/signor/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/signor 2024-07-24T00:03:40,854 copying build/lib/indra/sources/signor/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/signor 2024-07-24T00:03:40,856 copying build/lib/indra/sources/signor/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/signor 2024-07-24T00:03:40,858 creating build/bdist.linux-armv7l/wheel/indra/sources/dgi 2024-07-24T00:03:40,859 copying build/lib/indra/sources/dgi/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/dgi 2024-07-24T00:03:40,862 copying build/lib/indra/sources/dgi/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/dgi 2024-07-24T00:03:40,863 copying build/lib/indra/sources/dgi/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/dgi 2024-07-24T00:03:40,865 copying build/lib/indra/sources/dgi/__main__.py -> build/bdist.linux-armv7l/wheel/indra/sources/dgi 2024-07-24T00:03:40,867 creating build/bdist.linux-armv7l/wheel/indra/sources/trrust 2024-07-24T00:03:40,868 copying build/lib/indra/sources/trrust/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/trrust 2024-07-24T00:03:40,870 copying build/lib/indra/sources/trrust/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/trrust 2024-07-24T00:03:40,872 copying build/lib/indra/sources/trrust/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/trrust 2024-07-24T00:03:40,874 creating build/bdist.linux-armv7l/wheel/indra/sources/index_cards 2024-07-24T00:03:40,875 copying build/lib/indra/sources/index_cards/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/index_cards 2024-07-24T00:03:40,877 copying build/lib/indra/sources/index_cards/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/index_cards 2024-07-24T00:03:40,879 creating build/bdist.linux-armv7l/wheel/indra/sources/minerva 2024-07-24T00:03:40,880 copying build/lib/indra/sources/minerva/minerva_client.py -> build/bdist.linux-armv7l/wheel/indra/sources/minerva 2024-07-24T00:03:40,882 copying build/lib/indra/sources/minerva/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/minerva 2024-07-24T00:03:40,884 copying build/lib/indra/sources/minerva/id_mapping.py -> build/bdist.linux-armv7l/wheel/indra/sources/minerva 2024-07-24T00:03:40,886 copying build/lib/indra/sources/minerva/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/minerva 2024-07-24T00:03:40,888 copying build/lib/indra/sources/minerva/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/minerva 2024-07-24T00:03:40,890 creating build/bdist.linux-armv7l/wheel/indra/sources/trips 2024-07-24T00:03:40,891 copying build/lib/indra/sources/trips/analyze_ekbs.py -> build/bdist.linux-armv7l/wheel/indra/sources/trips 2024-07-24T00:03:40,894 copying build/lib/indra/sources/trips/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/trips 2024-07-24T00:03:40,898 copying build/lib/indra/sources/trips/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/trips 2024-07-24T00:03:40,899 copying build/lib/indra/sources/trips/client.py -> build/bdist.linux-armv7l/wheel/indra/sources/trips 2024-07-24T00:03:40,901 copying build/lib/indra/sources/trips/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/trips 2024-07-24T00:03:40,904 copying build/lib/indra/sources/trips/drum_reader.py -> build/bdist.linux-armv7l/wheel/indra/sources/trips 2024-07-24T00:03:40,906 creating build/bdist.linux-armv7l/wheel/indra/sources/semrep 2024-07-24T00:03:40,907 copying build/lib/indra/sources/semrep/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/semrep 2024-07-24T00:03:40,909 copying build/lib/indra/sources/semrep/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/semrep 2024-07-24T00:03:40,910 copying build/lib/indra/sources/semrep/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/semrep 2024-07-24T00:03:40,912 copying build/lib/indra/sources/semrep/Dockerfile -> build/bdist.linux-armv7l/wheel/indra/sources/semrep 2024-07-24T00:03:40,914 creating build/bdist.linux-armv7l/wheel/indra/sources/crog 2024-07-24T00:03:40,915 copying build/lib/indra/sources/crog/processor.py -> build/bdist.linux-armv7l/wheel/indra/sources/crog 2024-07-24T00:03:40,917 copying build/lib/indra/sources/crog/__init__.py -> build/bdist.linux-armv7l/wheel/indra/sources/crog 2024-07-24T00:03:40,919 copying build/lib/indra/sources/crog/api.py -> build/bdist.linux-armv7l/wheel/indra/sources/crog 2024-07-24T00:03:40,920 copying build/lib/indra/sources/crog/__main__.py -> build/bdist.linux-armv7l/wheel/indra/sources/crog 2024-07-24T00:03:40,922 creating build/bdist.linux-armv7l/wheel/indra/benchmarks 2024-07-24T00:03:40,924 creating build/bdist.linux-armv7l/wheel/indra/benchmarks/bioprocesses 2024-07-24T00:03:40,925 copying build/lib/indra/benchmarks/bioprocesses/__init__.py -> build/bdist.linux-armv7l/wheel/indra/benchmarks/bioprocesses 2024-07-24T00:03:40,927 copying build/lib/indra/benchmarks/bioprocesses/__main__.py -> build/bdist.linux-armv7l/wheel/indra/benchmarks/bioprocesses 2024-07-24T00:03:40,929 copying build/lib/indra/benchmarks/benchmark_db_coverage.py -> build/bdist.linux-armv7l/wheel/indra/benchmarks 2024-07-24T00:03:40,931 creating build/bdist.linux-armv7l/wheel/indra/benchmarks/phosphorylations 2024-07-24T00:03:40,932 copying build/lib/indra/benchmarks/phosphorylations/__init__.py -> build/bdist.linux-armv7l/wheel/indra/benchmarks/phosphorylations 2024-07-24T00:03:40,934 copying build/lib/indra/benchmarks/__init__.py -> build/bdist.linux-armv7l/wheel/indra/benchmarks 2024-07-24T00:03:40,935 copying build/lib/indra/benchmarks/benchmark_trips.py -> build/bdist.linux-armv7l/wheel/indra/benchmarks 2024-07-24T00:03:40,938 creating build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:40,939 copying build/lib/indra/literature/pmids_oa_txt.txt -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,101 copying build/lib/indra/literature/biorxiv_client.py -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,104 copying build/lib/indra/literature/newsapi_client.py -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,106 copying build/lib/indra/literature/coci_client.py -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,108 copying build/lib/indra/literature/__init__.py -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,110 copying build/lib/indra/literature/pmids_auth_xml.txt -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,170 copying build/lib/indra/literature/s3_client.py -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,172 copying build/lib/indra/literature/pmc_client.py -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,175 copying build/lib/indra/literature/elsevier_client.py -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,178 copying build/lib/indra/literature/pubmed_client.py -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,181 copying build/lib/indra/literature/pmids_oa_xml.txt -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,347 copying build/lib/indra/literature/adeft_tools.py -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,349 copying build/lib/indra/literature/crossref_client.py -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,352 copying build/lib/indra/literature/pmids_fulltext.txt -> build/bdist.linux-armv7l/wheel/indra/literature 2024-07-24T00:03:41,557 creating build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,558 copying build/lib/indra/tools/analyze_ontology.py -> build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,560 copying build/lib/indra/tools/assemble_corpus.py -> build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,563 copying build/lib/indra/tools/mechlinker_queries.py -> build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,565 copying build/lib/indra/tools/fix_invalidities.py -> build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,567 copying build/lib/indra/tools/expand_families.py -> build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,570 copying build/lib/indra/tools/incremental_model.py -> build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,572 copying build/lib/indra/tools/__init__.py -> build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,573 copying build/lib/indra/tools/extract_grounding_map.py -> build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,575 copying build/lib/indra/tools/adaptive_assembly.py -> build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,577 copying build/lib/indra/tools/executable_subnetwork.py -> build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,579 creating build/bdist.linux-armv7l/wheel/indra/tools/machine 2024-07-24T00:03:41,580 copying build/lib/indra/tools/machine/default-config.yaml -> build/bdist.linux-armv7l/wheel/indra/tools/machine 2024-07-24T00:03:41,582 copying build/lib/indra/tools/machine/config.py -> build/bdist.linux-armv7l/wheel/indra/tools/machine 2024-07-24T00:03:41,584 copying build/lib/indra/tools/machine/gmail_client.py -> build/bdist.linux-armv7l/wheel/indra/tools/machine 2024-07-24T00:03:41,586 copying build/lib/indra/tools/machine/__init__.py -> build/bdist.linux-armv7l/wheel/indra/tools/machine 2024-07-24T00:03:41,588 copying build/lib/indra/tools/machine/machine.py -> build/bdist.linux-armv7l/wheel/indra/tools/machine 2024-07-24T00:03:41,591 copying build/lib/indra/tools/machine/cli.py -> build/bdist.linux-armv7l/wheel/indra/tools/machine 2024-07-24T00:03:41,593 copying build/lib/indra/tools/machine/twitter_client.py -> build/bdist.linux-armv7l/wheel/indra/tools/machine 2024-07-24T00:03:41,594 copying build/lib/indra/tools/machine/__main__.py -> build/bdist.linux-armv7l/wheel/indra/tools/machine 2024-07-24T00:03:41,596 copying build/lib/indra/tools/gene_network.py -> build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,598 copying build/lib/indra/tools/hypothesis_annotator.py -> build/bdist.linux-armv7l/wheel/indra/tools 2024-07-24T00:03:41,601 copying build/lib/indra/config.py -> build/bdist.linux-armv7l/wheel/indra 2024-07-24T00:03:41,604 creating build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,605 copying build/lib/indra/resources/curated_site_map.csv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,607 copying build/lib/indra/resources/statements_schema.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,610 copying build/lib/indra/resources/cas_to_chebi.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,620 copying build/lib/indra/resources/ncit_map.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,628 copying build/lib/indra/resources/README.txt -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,630 copying build/lib/indra/resources/doid.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,705 copying build/lib/indra/resources/mesh_mappings.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,731 copying build/lib/indra/resources/update_resources.py -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,734 copying build/lib/indra/resources/kinases.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,736 copying build/lib/indra/resources/mesh_id_label_mappings.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,816 copying build/lib/indra/resources/hgnc_entries.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,907 copying build/lib/indra/resources/mirbase.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,916 copying build/lib/indra/resources/amino_acids.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,918 copying build/lib/indra/resources/hgnc_uniprot_preferred.csv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,920 copying build/lib/indra/resources/index_card_schema.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,923 creating build/bdist.linux-armv7l/wheel/indra/resources/grounding 2024-07-24T00:03:41,924 copying build/lib/indra/resources/grounding/extra_gmap_files.json -> build/bdist.linux-armv7l/wheel/indra/resources/grounding 2024-07-24T00:03:41,926 copying build/lib/indra/resources/grounding/misgrounding_map.csv -> build/bdist.linux-armv7l/wheel/indra/resources/grounding 2024-07-24T00:03:41,929 copying build/lib/indra/resources/grounding/covid_grounding.csv -> build/bdist.linux-armv7l/wheel/indra/resources/grounding 2024-07-24T00:03:41,931 copying build/lib/indra/resources/grounding/ignore.csv -> build/bdist.linux-armv7l/wheel/indra/resources/grounding 2024-07-24T00:03:41,933 copying build/lib/indra/resources/grounding/agents.json -> build/bdist.linux-armv7l/wheel/indra/resources/grounding 2024-07-24T00:03:41,935 copying build/lib/indra/resources/grounding/grounding_map.csv -> build/bdist.linux-armv7l/wheel/indra/resources/grounding 2024-07-24T00:03:41,939 copying build/lib/indra/resources/grounding/gene_grounding.csv -> build/bdist.linux-armv7l/wheel/indra/resources/grounding 2024-07-24T00:03:41,942 copying build/lib/indra/resources/source_info.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,944 copying build/lib/indra/resources/phosphatases.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,946 copying build/lib/indra/resources/uniprot_subcell_loc.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,948 copying build/lib/indra/resources/selventa_entries.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,954 copying build/lib/indra/resources/chebi_to_chembl.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:41,978 copying build/lib/indra/resources/eccode.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,001 copying build/lib/indra/resources/add_grounding_resources_from_csv.py -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,003 copying build/lib/indra/resources/pubchem_mesh_map.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,022 copying build/lib/indra/resources/ncit_allele_map.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,026 copying build/lib/indra/resources/drugbank_mappings.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,046 copying build/lib/indra/resources/default_belief_probs.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,048 copying build/lib/indra/resources/famplex_map.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,051 copying build/lib/indra/resources/__init__.py -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,053 copying build/lib/indra/resources/ido.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,056 copying build/lib/indra/resources/bioregistry.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,059 copying build/lib/indra/resources/rgd_entries.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,105 copying build/lib/indra/resources/mesh_supp_id_label_mappings.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,450 copying build/lib/indra/resources/mesh_cas_mappings.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,463 copying build/lib/indra/resources/lincs_small_molecules.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,472 copying build/lib/indra/resources/transcription_factors.csv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,475 copying build/lib/indra/resources/db_refs_map.csv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:42,477 copying build/lib/indra/resources/chebi.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,060 copying build/lib/indra/resources/source_mapping.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,062 copying build/lib/indra/resources/hp.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,134 copying build/lib/indra/resources/lspci.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,158 copying build/lib/indra/resources/identifiers_patterns.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,161 copying build/lib/indra/resources/default_config.ini -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,163 copying build/lib/indra/resources/biomappings.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,166 copying build/lib/indra/resources/greek_alphabet.py -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,168 copying build/lib/indra/resources/mgi_entries.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,221 copying build/lib/indra/resources/chembl_tas.csv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,248 copying build/lib/indra/resources/ras_pathway_proteins.csv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,251 copying build/lib/indra/resources/lincs_proteins.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,269 copying build/lib/indra/resources/hms_lincs_extra.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,272 copying build/lib/indra/resources/mondo.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,465 copying build/lib/indra/resources/chebi_to_pubchem.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,501 copying build/lib/indra/resources/pubmed_retractions.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,507 creating build/bdist.linux-armv7l/wheel/indra/resources/famplex 2024-07-24T00:03:43,508 copying build/lib/indra/resources/famplex/gene_prefixes.csv -> build/bdist.linux-armv7l/wheel/indra/resources/famplex 2024-07-24T00:03:43,510 copying build/lib/indra/resources/famplex/entities.csv -> build/bdist.linux-armv7l/wheel/indra/resources/famplex 2024-07-24T00:03:43,513 copying build/lib/indra/resources/famplex/grounding_map.csv -> build/bdist.linux-armv7l/wheel/indra/resources/famplex 2024-07-24T00:03:43,517 copying build/lib/indra/resources/famplex/equivalences.csv -> build/bdist.linux-armv7l/wheel/indra/resources/famplex 2024-07-24T00:03:43,521 copying build/lib/indra/resources/famplex/relations.csv -> build/bdist.linux-armv7l/wheel/indra/resources/famplex 2024-07-24T00:03:43,526 copying build/lib/indra/resources/bel_chebi_map.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,571 copying build/lib/indra/resources/go.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,819 copying build/lib/indra/resources/hmdb_to_chebi.tsv -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,824 copying build/lib/indra/resources/efo.json -> build/bdist.linux-armv7l/wheel/indra/resources 2024-07-24T00:03:43,910 copying build/lib/indra/java_vm.py -> build/bdist.linux-armv7l/wheel/indra 2024-07-24T00:03:43,912 creating build/bdist.linux-armv7l/wheel/indra/assemblers 2024-07-24T00:03:43,913 creating build/bdist.linux-armv7l/wheel/indra/assemblers/indranet 2024-07-24T00:03:43,914 copying build/lib/indra/assemblers/indranet/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/indranet 2024-07-24T00:03:43,916 copying build/lib/indra/assemblers/indranet/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/indranet 2024-07-24T00:03:43,918 copying build/lib/indra/assemblers/indranet/net.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/indranet 2024-07-24T00:03:43,921 creating build/bdist.linux-armv7l/wheel/indra/assemblers/sbgn 2024-07-24T00:03:43,922 copying build/lib/indra/assemblers/sbgn/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/sbgn 2024-07-24T00:03:43,923 copying build/lib/indra/assemblers/sbgn/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/sbgn 2024-07-24T00:03:43,926 copying build/lib/indra/assemblers/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers 2024-07-24T00:03:43,927 creating build/bdist.linux-armv7l/wheel/indra/assemblers/sif 2024-07-24T00:03:43,928 copying build/lib/indra/assemblers/sif/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/sif 2024-07-24T00:03:43,930 copying build/lib/indra/assemblers/sif/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/sif 2024-07-24T00:03:43,932 creating build/bdist.linux-armv7l/wheel/indra/assemblers/graph 2024-07-24T00:03:43,933 copying build/lib/indra/assemblers/graph/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/graph 2024-07-24T00:03:43,935 copying build/lib/indra/assemblers/graph/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/graph 2024-07-24T00:03:43,938 creating build/bdist.linux-armv7l/wheel/indra/assemblers/kami 2024-07-24T00:03:43,939 copying build/lib/indra/assemblers/kami/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/kami 2024-07-24T00:03:43,940 copying build/lib/indra/assemblers/kami/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/kami 2024-07-24T00:03:43,943 creating build/bdist.linux-armv7l/wheel/indra/assemblers/pysb 2024-07-24T00:03:43,944 copying build/lib/indra/assemblers/pysb/preassembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/pysb 2024-07-24T00:03:43,946 copying build/lib/indra/assemblers/pysb/kappa_util.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/pysb 2024-07-24T00:03:43,949 copying build/lib/indra/assemblers/pysb/bmi_wrapper.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/pysb 2024-07-24T00:03:43,951 copying build/lib/indra/assemblers/pysb/common.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/pysb 2024-07-24T00:03:43,953 copying build/lib/indra/assemblers/pysb/base_agents.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/pysb 2024-07-24T00:03:43,955 copying build/lib/indra/assemblers/pysb/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/pysb 2024-07-24T00:03:43,957 copying build/lib/indra/assemblers/pysb/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/pysb 2024-07-24T00:03:43,961 copying build/lib/indra/assemblers/pysb/sites.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/pysb 2024-07-24T00:03:43,963 copying build/lib/indra/assemblers/pysb/export.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/pysb 2024-07-24T00:03:43,965 creating build/bdist.linux-armv7l/wheel/indra/assemblers/tsv 2024-07-24T00:03:43,966 copying build/lib/indra/assemblers/tsv/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/tsv 2024-07-24T00:03:43,968 copying build/lib/indra/assemblers/tsv/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/tsv 2024-07-24T00:03:43,971 creating build/bdist.linux-armv7l/wheel/indra/assemblers/english 2024-07-24T00:03:43,971 copying build/lib/indra/assemblers/english/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/english 2024-07-24T00:03:43,973 copying build/lib/indra/assemblers/english/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/english 2024-07-24T00:03:43,976 creating build/bdist.linux-armv7l/wheel/indra/assemblers/cyjs 2024-07-24T00:03:43,977 copying build/lib/indra/assemblers/cyjs/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/cyjs 2024-07-24T00:03:43,978 copying build/lib/indra/assemblers/cyjs/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/cyjs 2024-07-24T00:03:43,981 creating build/bdist.linux-armv7l/wheel/indra/assemblers/html 2024-07-24T00:03:43,982 copying build/lib/indra/assemblers/html/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/html 2024-07-24T00:03:43,984 copying build/lib/indra/assemblers/html/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/html 2024-07-24T00:03:43,987 creating build/bdist.linux-armv7l/wheel/indra/assemblers/html/templates 2024-07-24T00:03:43,988 creating build/bdist.linux-armv7l/wheel/indra/assemblers/html/templates/indra 2024-07-24T00:03:43,989 copying build/lib/indra/assemblers/html/templates/indra/template.html -> build/bdist.linux-armv7l/wheel/indra/assemblers/html/templates/indra 2024-07-24T00:03:43,991 copying build/lib/indra/assemblers/html/templates/indra/statements_view.html -> build/bdist.linux-armv7l/wheel/indra/assemblers/html/templates/indra 2024-07-24T00:03:43,994 creating build/bdist.linux-armv7l/wheel/indra/assemblers/pybel 2024-07-24T00:03:43,995 copying build/lib/indra/assemblers/pybel/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/pybel 2024-07-24T00:03:43,997 copying build/lib/indra/assemblers/pybel/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/pybel 2024-07-24T00:03:44,000 creating build/bdist.linux-armv7l/wheel/indra/assemblers/index_card 2024-07-24T00:03:44,001 copying build/lib/indra/assemblers/index_card/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/index_card 2024-07-24T00:03:44,002 copying build/lib/indra/assemblers/index_card/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/index_card 2024-07-24T00:03:44,005 creating build/bdist.linux-armv7l/wheel/indra/assemblers/cx 2024-07-24T00:03:44,006 copying build/lib/indra/assemblers/cx/__init__.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/cx 2024-07-24T00:03:44,008 copying build/lib/indra/assemblers/cx/assembler.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/cx 2024-07-24T00:03:44,010 copying build/lib/indra/assemblers/cx/hub_layout.py -> build/bdist.linux-armv7l/wheel/indra/assemblers/cx 2024-07-24T00:03:44,013 copying build/lib/indra/__init__.py -> build/bdist.linux-armv7l/wheel/indra 2024-07-24T00:03:44,015 creating build/bdist.linux-armv7l/wheel/indra/explanation 2024-07-24T00:03:44,016 creating build/bdist.linux-armv7l/wheel/indra/explanation/pathfinding 2024-07-24T00:03:44,017 copying build/lib/indra/explanation/pathfinding/util.py -> build/bdist.linux-armv7l/wheel/indra/explanation/pathfinding 2024-07-24T00:03:44,020 copying build/lib/indra/explanation/pathfinding/pathfinding.py -> build/bdist.linux-armv7l/wheel/indra/explanation/pathfinding 2024-07-24T00:03:44,022 copying build/lib/indra/explanation/pathfinding/__init__.py -> build/bdist.linux-armv7l/wheel/indra/explanation/pathfinding 2024-07-24T00:03:44,024 copying build/lib/indra/explanation/reporting.py -> build/bdist.linux-armv7l/wheel/indra/explanation 2024-07-24T00:03:44,027 creating build/bdist.linux-armv7l/wheel/indra/explanation/model_checker 2024-07-24T00:03:44,028 copying build/lib/indra/explanation/model_checker/signed_graph.py -> build/bdist.linux-armv7l/wheel/indra/explanation/model_checker 2024-07-24T00:03:44,030 copying build/lib/indra/explanation/model_checker/unsigned_graph.py -> build/bdist.linux-armv7l/wheel/indra/explanation/model_checker 2024-07-24T00:03:44,032 copying build/lib/indra/explanation/model_checker/pysb.py -> build/bdist.linux-armv7l/wheel/indra/explanation/model_checker 2024-07-24T00:03:44,035 copying build/lib/indra/explanation/model_checker/pybel.py -> build/bdist.linux-armv7l/wheel/indra/explanation/model_checker 2024-07-24T00:03:44,037 copying build/lib/indra/explanation/model_checker/model_checker.py -> build/bdist.linux-armv7l/wheel/indra/explanation/model_checker 2024-07-24T00:03:44,040 copying build/lib/indra/explanation/model_checker/__init__.py -> build/bdist.linux-armv7l/wheel/indra/explanation/model_checker 2024-07-24T00:03:44,042 copying build/lib/indra/explanation/__init__.py -> build/bdist.linux-armv7l/wheel/indra/explanation 2024-07-24T00:03:44,043 creating build/bdist.linux-armv7l/wheel/indra/mechlinker 2024-07-24T00:03:44,044 copying build/lib/indra/mechlinker/__init__.py -> build/bdist.linux-armv7l/wheel/indra/mechlinker 2024-07-24T00:03:44,047 creating build/bdist.linux-armv7l/wheel/indra/pipeline 2024-07-24T00:03:44,048 copying build/lib/indra/pipeline/decorators.py -> build/bdist.linux-armv7l/wheel/indra/pipeline 2024-07-24T00:03:44,050 copying build/lib/indra/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/indra/pipeline 2024-07-24T00:03:44,051 copying build/lib/indra/pipeline/pipeline.py -> build/bdist.linux-armv7l/wheel/indra/pipeline 2024-07-24T00:03:44,054 creating build/bdist.linux-armv7l/wheel/indra/preassembler 2024-07-24T00:03:44,055 copying build/lib/indra/preassembler/custom_preassembly.py -> build/bdist.linux-armv7l/wheel/indra/preassembler 2024-07-24T00:03:44,057 creating build/bdist.linux-armv7l/wheel/indra/preassembler/grounding_mapper 2024-07-24T00:03:44,058 copying build/lib/indra/preassembler/grounding_mapper/mapper.py -> build/bdist.linux-armv7l/wheel/indra/preassembler/grounding_mapper 2024-07-24T00:03:44,061 copying build/lib/indra/preassembler/grounding_mapper/disambiguate.py -> build/bdist.linux-armv7l/wheel/indra/preassembler/grounding_mapper 2024-07-24T00:03:44,063 copying build/lib/indra/preassembler/grounding_mapper/__init__.py -> build/bdist.linux-armv7l/wheel/indra/preassembler/grounding_mapper 2024-07-24T00:03:44,065 copying build/lib/indra/preassembler/grounding_mapper/gilda.py -> build/bdist.linux-armv7l/wheel/indra/preassembler/grounding_mapper 2024-07-24T00:03:44,067 copying build/lib/indra/preassembler/grounding_mapper/analysis.py -> build/bdist.linux-armv7l/wheel/indra/preassembler/grounding_mapper 2024-07-24T00:03:44,069 copying build/lib/indra/preassembler/__init__.py -> build/bdist.linux-armv7l/wheel/indra/preassembler 2024-07-24T00:03:44,072 copying build/lib/indra/preassembler/sitemapper.py -> build/bdist.linux-armv7l/wheel/indra/preassembler 2024-07-24T00:03:44,075 copying build/lib/indra/preassembler/refinement.py -> build/bdist.linux-armv7l/wheel/indra/preassembler 2024-07-24T00:03:44,078 creating build/bdist.linux-armv7l/wheel/indra/ontology 2024-07-24T00:03:44,079 copying build/lib/indra/ontology/__init__.py -> build/bdist.linux-armv7l/wheel/indra/ontology 2024-07-24T00:03:44,081 copying build/lib/indra/ontology/standardize.py -> build/bdist.linux-armv7l/wheel/indra/ontology 2024-07-24T00:03:44,083 creating build/bdist.linux-armv7l/wheel/indra/ontology/app 2024-07-24T00:03:44,084 copying build/lib/indra/ontology/app/app.py -> build/bdist.linux-armv7l/wheel/indra/ontology/app 2024-07-24T00:03:44,086 copying build/lib/indra/ontology/app/__init__.py -> build/bdist.linux-armv7l/wheel/indra/ontology/app 2024-07-24T00:03:44,089 creating build/bdist.linux-armv7l/wheel/indra/ontology/bio 2024-07-24T00:03:44,090 copying build/lib/indra/ontology/bio/ontology.py -> build/bdist.linux-armv7l/wheel/indra/ontology/bio 2024-07-24T00:03:44,092 copying build/lib/indra/ontology/bio/__init__.py -> build/bdist.linux-armv7l/wheel/indra/ontology/bio 2024-07-24T00:03:44,094 copying build/lib/indra/ontology/bio/__main__.py -> build/bdist.linux-armv7l/wheel/indra/ontology/bio 2024-07-24T00:03:44,096 copying build/lib/indra/ontology/ontology_graph.py -> build/bdist.linux-armv7l/wheel/indra/ontology 2024-07-24T00:03:44,099 creating build/bdist.linux-armv7l/wheel/indra/ontology/virtual 2024-07-24T00:03:44,100 copying build/lib/indra/ontology/virtual/ontology.py -> build/bdist.linux-armv7l/wheel/indra/ontology/virtual 2024-07-24T00:03:44,102 copying build/lib/indra/ontology/virtual/__init__.py -> build/bdist.linux-armv7l/wheel/indra/ontology/virtual 2024-07-24T00:03:44,104 creating build/bdist.linux-armv7l/wheel/indra/belief 2024-07-24T00:03:44,105 copying build/lib/indra/belief/__init__.py -> build/bdist.linux-armv7l/wheel/indra/belief 2024-07-24T00:03:44,108 copying build/lib/indra/belief/skl.py -> build/bdist.linux-armv7l/wheel/indra/belief 2024-07-24T00:03:44,111 creating build/bdist.linux-armv7l/wheel/indra/statements 2024-07-24T00:03:44,112 copying build/lib/indra/statements/util.py -> build/bdist.linux-armv7l/wheel/indra/statements 2024-07-24T00:03:44,114 copying build/lib/indra/statements/delta.py -> build/bdist.linux-armv7l/wheel/indra/statements 2024-07-24T00:03:44,116 copying build/lib/indra/statements/resources.py -> build/bdist.linux-armv7l/wheel/indra/statements 2024-07-24T00:03:44,118 copying build/lib/indra/statements/evidence.py -> build/bdist.linux-armv7l/wheel/indra/statements 2024-07-24T00:03:44,120 copying build/lib/indra/statements/context.py -> build/bdist.linux-armv7l/wheel/indra/statements 2024-07-24T00:03:44,122 copying build/lib/indra/statements/io.py -> build/bdist.linux-armv7l/wheel/indra/statements 2024-07-24T00:03:44,124 copying build/lib/indra/statements/__init__.py -> build/bdist.linux-armv7l/wheel/indra/statements 2024-07-24T00:03:44,126 copying build/lib/indra/statements/validate.py -> build/bdist.linux-armv7l/wheel/indra/statements 2024-07-24T00:03:44,129 copying build/lib/indra/statements/concept.py -> build/bdist.linux-armv7l/wheel/indra/statements 2024-07-24T00:03:44,131 copying build/lib/indra/statements/statements.py -> build/bdist.linux-armv7l/wheel/indra/statements 2024-07-24T00:03:44,135 copying build/lib/indra/statements/agent.py -> build/bdist.linux-armv7l/wheel/indra/statements 2024-07-24T00:03:44,140 creating build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,141 copying build/lib/indra/tests/test_biofactoid.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,143 copying build/lib/indra/tests/util.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,144 copying build/lib/indra/tests/test_ndex_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,146 copying build/lib/indra/tests/test_acsn.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,148 copying build/lib/indra/tests/test_cbio_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,150 copying build/lib/indra/tests/test_pubmed_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,152 copying build/lib/indra/tests/test_belief_sklearn.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,155 copying build/lib/indra/tests/test_sparser.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,157 copying build/lib/indra/tests/test_pybel_api.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,160 copying build/lib/indra/tests/test_rest_api.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,163 copying build/lib/indra/tests/test_chebi_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,165 copying build/lib/indra/tests/test_drugbank.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,166 copying build/lib/indra/tests/test_gnbr.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,168 copying build/lib/indra/tests/test_tees.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,170 copying build/lib/indra/tests/test_s3_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,173 copying build/lib/indra/tests/test_kappa_util.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,174 copying build/lib/indra/tests/test_grounding_resources.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,176 copying build/lib/indra/tests/test_biolookup_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,177 copying build/lib/indra/tests/test_phosphoelm_processor.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,179 copying build/lib/indra/tests/test_rlimsp.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,181 copying build/lib/indra/tests/test_pysb_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,184 copying build/lib/indra/tests/test_statements.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,188 copying build/lib/indra/tests/test_belief_engine.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,191 copying build/lib/indra/tests/test_tsv_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,192 copying build/lib/indra/tests/test_hgnc_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,194 copying build/lib/indra/tests/test_custom_preassembly.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,195 copying build/lib/indra/tests/test_rgd_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,197 copying build/lib/indra/tests/test_pybel_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,200 copying build/lib/indra/tests/test_benchmarks.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,201 copying build/lib/indra/tests/test_incremental_model.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,203 copying build/lib/indra/tests/test_db_rest.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,205 copying build/lib/indra/tests/test_adaptive_assembly.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,207 copying build/lib/indra/tests/test_mesh.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,209 copying build/lib/indra/tests/test_biopax.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,211 copying build/lib/indra/tests/test_medscan.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,213 copying build/lib/indra/tests/test_statement_validate.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,215 copying build/lib/indra/tests/test_uniprot_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,217 copying build/lib/indra/tests/test_omnipath.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,219 copying build/lib/indra/tests/test_go_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,221 copying build/lib/indra/tests/test_rasmachine.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,222 copying build/lib/indra/tests/test_identifiers.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,225 copying build/lib/indra/tests/test_lincs_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,227 copying build/lib/indra/tests/test_mirbase_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,228 copying build/lib/indra/tests/test_signor.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,231 copying build/lib/indra/tests/test_cx_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,233 copying build/lib/indra/tests/test_crossref_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,235 copying build/lib/indra/tests/test_assemble_corpus.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,238 copying build/lib/indra/tests/__init__.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,239 copying build/lib/indra/tests/test_kami_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,241 copying build/lib/indra/tests/test_groundingmapper.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,244 copying build/lib/indra/tests/test_eidos.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,245 copying build/lib/indra/tests/test_coci_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,247 copying build/lib/indra/tests/test_ndex_cx_processor.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,249 copying build/lib/indra/tests/test_trrust.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,250 copying build/lib/indra/tests/test_taxonomy_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,252 copying build/lib/indra/tests/test_util.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,254 copying build/lib/indra/tests/test_english_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,256 copying build/lib/indra/tests/test_sif_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,258 copying build/lib/indra/tests/test_minerva.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,260 creating build/bdist.linux-armv7l/wheel/indra/tests/test_obo_clients 2024-07-24T00:03:44,261 copying build/lib/indra/tests/test_obo_clients/test_efo_client.py -> build/bdist.linux-armv7l/wheel/indra/tests/test_obo_clients 2024-07-24T00:03:44,262 copying build/lib/indra/tests/test_obo_clients/test_doid_client.py -> build/bdist.linux-armv7l/wheel/indra/tests/test_obo_clients 2024-07-24T00:03:44,264 copying build/lib/indra/tests/test_obo_clients/__init__.py -> build/bdist.linux-armv7l/wheel/indra/tests/test_obo_clients 2024-07-24T00:03:44,266 copying build/lib/indra/tests/test_obo_clients/test_ec_client.py -> build/bdist.linux-armv7l/wheel/indra/tests/test_obo_clients 2024-07-24T00:03:44,267 copying build/lib/indra/tests/test_obo_clients/test_mondo_client.py -> build/bdist.linux-armv7l/wheel/indra/tests/test_obo_clients 2024-07-24T00:03:44,269 copying build/lib/indra/tests/test_obo_clients/test_ido_client.py -> build/bdist.linux-armv7l/wheel/indra/tests/test_obo_clients 2024-07-24T00:03:44,271 copying build/lib/indra/tests/test_obo_clients/test_hp_client.py -> build/bdist.linux-armv7l/wheel/indra/tests/test_obo_clients 2024-07-24T00:03:44,273 copying build/lib/indra/tests/test_fix_invalidities.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,275 copying build/lib/indra/tests/test_elsevier_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,276 copying build/lib/indra/tests/test_adeft_tools.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,278 copying build/lib/indra/tests/test_cyjs_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,281 copying build/lib/indra/tests/test_statements_serialization.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,283 copying build/lib/indra/tests/test_literature.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,285 copying build/lib/indra/tests/test_sparser_xml.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,287 copying build/lib/indra/tests/test_reach.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,289 copying build/lib/indra/tests/make_mock_ontology.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,291 copying build/lib/indra/tests/test_ctd.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,293 copying build/lib/indra/tests/test_chembl_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,295 copying build/lib/indra/tests/test_bioregistry.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,297 copying build/lib/indra/tests/conftest.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,299 copying build/lib/indra/tests/test_mgi_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,300 copying build/lib/indra/tests/test_mechlinker.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,302 copying build/lib/indra/tests/test_pipeline.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,304 copying build/lib/indra/tests/test_model_checker.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,308 copying build/lib/indra/tests/test_graph_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,310 copying build/lib/indra/tests/test_preassembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,313 copying build/lib/indra/tests/test_bmi_wrapper.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,315 copying build/lib/indra/tests/test_pmc_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,317 copying build/lib/indra/tests/test_isi.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,318 copying build/lib/indra/tests/test_tas.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,320 copying build/lib/indra/tests/test_pubchem_client.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,322 copying build/lib/indra/tests/test_indranet_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,324 copying build/lib/indra/tests/test_virhostnet.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,326 copying build/lib/indra/tests/test_index_card_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,328 copying build/lib/indra/tests/test_hypothesis.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,330 copying build/lib/indra/tests/test_json_schema.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,332 copying build/lib/indra/tests/test_sitemapper.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,335 copying build/lib/indra/tests/test_sbgn_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,336 copying build/lib/indra/tests/test_hprd.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,339 copying build/lib/indra/tests/test_docs_code.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,341 copying build/lib/indra/tests/test_biogrid.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,343 copying build/lib/indra/tests/test_geneways.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,345 copying build/lib/indra/tests/test_delta.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,347 copying build/lib/indra/tests/test_pathfinding.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,349 copying build/lib/indra/tests/test_html_assembler.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,352 copying build/lib/indra/tests/test_trips_ekbs.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,355 copying build/lib/indra/tests/test_context.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,357 copying build/lib/indra/tests/test_ontology.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,359 copying build/lib/indra/tests/test_trips.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,361 copying build/lib/indra/tests/test_expand_families.py -> build/bdist.linux-armv7l/wheel/indra/tests 2024-07-24T00:03:44,365 creating build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,366 copying build/lib/indra/databases/chembl_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,369 copying build/lib/indra/databases/identifiers.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,371 copying build/lib/indra/databases/uniprot_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,373 copying build/lib/indra/databases/ndex_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,375 copying build/lib/indra/databases/obo_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,377 copying build/lib/indra/databases/mirbase_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,379 copying build/lib/indra/databases/chebi_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,381 copying build/lib/indra/databases/go_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,383 copying build/lib/indra/databases/ec_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,385 copying build/lib/indra/databases/mesh_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,387 copying build/lib/indra/databases/__init__.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,389 copying build/lib/indra/databases/ido_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,391 copying build/lib/indra/databases/pubchem_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,392 copying build/lib/indra/databases/rgd_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,394 copying build/lib/indra/databases/drugbank_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,396 copying build/lib/indra/databases/hgnc_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,399 copying build/lib/indra/databases/efo_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,401 copying build/lib/indra/databases/owl_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,403 copying build/lib/indra/databases/taxonomy_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,405 copying build/lib/indra/databases/hp_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,408 copying build/lib/indra/databases/mondo_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,410 copying build/lib/indra/databases/cbio_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,415 copying build/lib/indra/databases/lincs_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,420 copying build/lib/indra/databases/context_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,425 copying build/lib/indra/databases/mgi_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,430 copying build/lib/indra/databases/doid_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,435 copying build/lib/indra/databases/bioregistry_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,442 copying build/lib/indra/databases/biolookup_client.py -> build/bdist.linux-armv7l/wheel/indra/databases 2024-07-24T00:03:44,449 creating build/bdist.linux-armv7l/wheel/indra/util 2024-07-24T00:03:44,451 copying build/lib/indra/util/repickle_stmts.py -> build/bdist.linux-armv7l/wheel/indra/util 2024-07-24T00:03:44,456 copying build/lib/indra/util/plot_formatting.py -> build/bdist.linux-armv7l/wheel/indra/util 2024-07-24T00:03:44,458 copying build/lib/indra/util/_require_python3.py -> build/bdist.linux-armv7l/wheel/indra/util 2024-07-24T00:03:44,460 copying build/lib/indra/util/__init__.py -> build/bdist.linux-armv7l/wheel/indra/util 2024-07-24T00:03:44,462 copying build/lib/indra/util/get_version.py -> build/bdist.linux-armv7l/wheel/indra/util 2024-07-24T00:03:44,465 copying build/lib/indra/util/aws.py -> build/bdist.linux-armv7l/wheel/indra/util 2024-07-24T00:03:44,467 copying build/lib/indra/util/nested_dict.py -> build/bdist.linux-armv7l/wheel/indra/util 2024-07-24T00:03:44,470 copying build/lib/indra/util/statement_presentation.py -> build/bdist.linux-armv7l/wheel/indra/util 2024-07-24T00:03:44,473 copying build/lib/indra/util/multiprocessing_traceback.py -> build/bdist.linux-armv7l/wheel/indra/util 2024-07-24T00:03:44,475 copying build/lib/indra/util/perm_cache.py -> build/bdist.linux-armv7l/wheel/indra/util 2024-07-24T00:03:44,477 running install_egg_info 2024-07-24T00:03:44,510 Copying indra.egg-info to build/bdist.linux-armv7l/wheel/indra-1.23.0-py3.11.egg-info 2024-07-24T00:03:44,525 running install_scripts 2024-07-24T00:03:44,566 creating build/bdist.linux-armv7l/wheel/indra-1.23.0.dist-info/WHEEL 2024-07-24T00:03:44,569 creating '/tmp/pip-wheel-1b493nqj/indra-1.23.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-24T00:03:44,572 adding 'indra/__init__.py' 2024-07-24T00:03:44,574 adding 'indra/config.py' 2024-07-24T00:03:44,575 adding 'indra/java_vm.py' 2024-07-24T00:03:44,577 adding 'indra/assemblers/__init__.py' 2024-07-24T00:03:44,579 adding 'indra/assemblers/cx/__init__.py' 2024-07-24T00:03:44,583 adding 'indra/assemblers/cx/assembler.py' 2024-07-24T00:03:44,585 adding 'indra/assemblers/cx/hub_layout.py' 2024-07-24T00:03:44,587 adding 'indra/assemblers/cyjs/__init__.py' 2024-07-24T00:03:44,590 adding 'indra/assemblers/cyjs/assembler.py' 2024-07-24T00:03:44,592 adding 'indra/assemblers/english/__init__.py' 2024-07-24T00:03:44,595 adding 'indra/assemblers/english/assembler.py' 2024-07-24T00:03:44,597 adding 'indra/assemblers/graph/__init__.py' 2024-07-24T00:03:44,599 adding 'indra/assemblers/graph/assembler.py' 2024-07-24T00:03:44,601 adding 'indra/assemblers/html/__init__.py' 2024-07-24T00:03:44,607 adding 'indra/assemblers/html/assembler.py' 2024-07-24T00:03:44,611 adding 'indra/assemblers/html/templates/indra/statements_view.html' 2024-07-24T00:03:44,613 adding 'indra/assemblers/html/templates/indra/template.html' 2024-07-24T00:03:44,615 adding 'indra/assemblers/index_card/__init__.py' 2024-07-24T00:03:44,617 adding 'indra/assemblers/index_card/assembler.py' 2024-07-24T00:03:44,619 adding 'indra/assemblers/indranet/__init__.py' 2024-07-24T00:03:44,623 adding 'indra/assemblers/indranet/assembler.py' 2024-07-24T00:03:44,625 adding 'indra/assemblers/indranet/net.py' 2024-07-24T00:03:44,627 adding 'indra/assemblers/kami/__init__.py' 2024-07-24T00:03:44,629 adding 'indra/assemblers/kami/assembler.py' 2024-07-24T00:03:44,631 adding 'indra/assemblers/pybel/__init__.py' 2024-07-24T00:03:44,635 adding 'indra/assemblers/pybel/assembler.py' 2024-07-24T00:03:44,638 adding 'indra/assemblers/pysb/__init__.py' 2024-07-24T00:03:44,648 adding 'indra/assemblers/pysb/assembler.py' 2024-07-24T00:03:44,650 adding 'indra/assemblers/pysb/base_agents.py' 2024-07-24T00:03:44,652 adding 'indra/assemblers/pysb/bmi_wrapper.py' 2024-07-24T00:03:44,654 adding 'indra/assemblers/pysb/common.py' 2024-07-24T00:03:44,656 adding 'indra/assemblers/pysb/export.py' 2024-07-24T00:03:44,658 adding 'indra/assemblers/pysb/kappa_util.py' 2024-07-24T00:03:44,659 adding 'indra/assemblers/pysb/preassembler.py' 2024-07-24T00:03:44,661 adding 'indra/assemblers/pysb/sites.py' 2024-07-24T00:03:44,663 adding 'indra/assemblers/sbgn/__init__.py' 2024-07-24T00:03:44,665 adding 'indra/assemblers/sbgn/assembler.py' 2024-07-24T00:03:44,667 adding 'indra/assemblers/sif/__init__.py' 2024-07-24T00:03:44,670 adding 'indra/assemblers/sif/assembler.py' 2024-07-24T00:03:44,671 adding 'indra/assemblers/tsv/__init__.py' 2024-07-24T00:03:44,674 adding 'indra/assemblers/tsv/assembler.py' 2024-07-24T00:03:44,678 adding 'indra/belief/__init__.py' 2024-07-24T00:03:44,683 adding 'indra/belief/skl.py' 2024-07-24T00:03:44,685 adding 'indra/benchmarks/__init__.py' 2024-07-24T00:03:44,687 adding 'indra/benchmarks/benchmark_db_coverage.py' 2024-07-24T00:03:44,689 adding 'indra/benchmarks/benchmark_trips.py' 2024-07-24T00:03:44,691 adding 'indra/benchmarks/bioprocesses/__init__.py' 2024-07-24T00:03:44,693 adding 'indra/benchmarks/bioprocesses/__main__.py' 2024-07-24T00:03:44,695 adding 'indra/benchmarks/phosphorylations/__init__.py' 2024-07-24T00:03:44,698 adding 'indra/databases/__init__.py' 2024-07-24T00:03:44,699 adding 'indra/databases/biolookup_client.py' 2024-07-24T00:03:44,701 adding 'indra/databases/bioregistry_client.py' 2024-07-24T00:03:44,704 adding 'indra/databases/cbio_client.py' 2024-07-24T00:03:44,706 adding 'indra/databases/chebi_client.py' 2024-07-24T00:03:44,708 adding 'indra/databases/chembl_client.py' 2024-07-24T00:03:44,710 adding 'indra/databases/context_client.py' 2024-07-24T00:03:44,711 adding 'indra/databases/doid_client.py' 2024-07-24T00:03:44,713 adding 'indra/databases/drugbank_client.py' 2024-07-24T00:03:44,714 adding 'indra/databases/ec_client.py' 2024-07-24T00:03:44,716 adding 'indra/databases/efo_client.py' 2024-07-24T00:03:44,717 adding 'indra/databases/go_client.py' 2024-07-24T00:03:44,720 adding 'indra/databases/hgnc_client.py' 2024-07-24T00:03:44,721 adding 'indra/databases/hp_client.py' 2024-07-24T00:03:44,724 adding 'indra/databases/identifiers.py' 2024-07-24T00:03:44,725 adding 'indra/databases/ido_client.py' 2024-07-24T00:03:44,727 adding 'indra/databases/lincs_client.py' 2024-07-24T00:03:44,730 adding 'indra/databases/mesh_client.py' 2024-07-24T00:03:44,732 adding 'indra/databases/mgi_client.py' 2024-07-24T00:03:44,733 adding 'indra/databases/mirbase_client.py' 2024-07-24T00:03:44,735 adding 'indra/databases/mondo_client.py' 2024-07-24T00:03:44,737 adding 'indra/databases/ndex_client.py' 2024-07-24T00:03:44,740 adding 'indra/databases/obo_client.py' 2024-07-24T00:03:44,742 adding 'indra/databases/owl_client.py' 2024-07-24T00:03:44,743 adding 'indra/databases/pubchem_client.py' 2024-07-24T00:03:44,745 adding 'indra/databases/rgd_client.py' 2024-07-24T00:03:44,747 adding 'indra/databases/taxonomy_client.py' 2024-07-24T00:03:44,748 adding 'indra/databases/uniprot_client.py' 2024-07-24T00:03:44,749 adding 'indra/explanation/__init__.py' 2024-07-24T00:03:44,751 adding 'indra/explanation/reporting.py' 2024-07-24T00:03:44,753 adding 'indra/explanation/model_checker/__init__.py' 2024-07-24T00:03:44,756 adding 'indra/explanation/model_checker/model_checker.py' 2024-07-24T00:03:44,758 adding 'indra/explanation/model_checker/pybel.py' 2024-07-24T00:03:44,763 adding 'indra/explanation/model_checker/pysb.py' 2024-07-24T00:03:44,765 adding 'indra/explanation/model_checker/signed_graph.py' 2024-07-24T00:03:44,766 adding 'indra/explanation/model_checker/unsigned_graph.py' 2024-07-24T00:03:44,768 adding 'indra/explanation/pathfinding/__init__.py' 2024-07-24T00:03:44,772 adding 'indra/explanation/pathfinding/pathfinding.py' 2024-07-24T00:03:44,774 adding 'indra/explanation/pathfinding/util.py' 2024-07-24T00:03:44,776 adding 'indra/literature/__init__.py' 2024-07-24T00:03:44,778 adding 'indra/literature/adeft_tools.py' 2024-07-24T00:03:44,780 adding 'indra/literature/biorxiv_client.py' 2024-07-24T00:03:44,781 adding 'indra/literature/coci_client.py' 2024-07-24T00:03:44,783 adding 'indra/literature/crossref_client.py' 2024-07-24T00:03:44,785 adding 'indra/literature/elsevier_client.py' 2024-07-24T00:03:44,786 adding 'indra/literature/newsapi_client.py' 2024-07-24T00:03:44,789 adding 'indra/literature/pmc_client.py' 2024-07-24T00:03:45,998 adding 'indra/literature/pmids_auth_xml.txt' 2024-07-24T00:03:51,062 adding 'indra/literature/pmids_fulltext.txt' 2024-07-24T00:03:55,044 adding 'indra/literature/pmids_oa_txt.txt' 2024-07-24T00:03:59,015 adding 'indra/literature/pmids_oa_xml.txt' 2024-07-24T00:03:59,086 adding 'indra/literature/pubmed_client.py' 2024-07-24T00:03:59,089 adding 'indra/literature/s3_client.py' 2024-07-24T00:03:59,093 adding 'indra/mechlinker/__init__.py' 2024-07-24T00:03:59,095 adding 'indra/ontology/__init__.py' 2024-07-24T00:03:59,097 adding 'indra/ontology/ontology_graph.py' 2024-07-24T00:03:59,099 adding 'indra/ontology/standardize.py' 2024-07-24T00:03:59,101 adding 'indra/ontology/app/__init__.py' 2024-07-24T00:03:59,102 adding 'indra/ontology/app/app.py' 2024-07-24T00:03:59,104 adding 'indra/ontology/bio/__init__.py' 2024-07-24T00:03:59,105 adding 'indra/ontology/bio/__main__.py' 2024-07-24T00:03:59,108 adding 'indra/ontology/bio/ontology.py' 2024-07-24T00:03:59,110 adding 'indra/ontology/virtual/__init__.py' 2024-07-24T00:03:59,111 adding 'indra/ontology/virtual/ontology.py' 2024-07-24T00:03:59,112 adding 'indra/pipeline/__init__.py' 2024-07-24T00:03:59,113 adding 'indra/pipeline/decorators.py' 2024-07-24T00:03:59,116 adding 'indra/pipeline/pipeline.py' 2024-07-24T00:03:59,121 adding 'indra/preassembler/__init__.py' 2024-07-24T00:03:59,122 adding 'indra/preassembler/custom_preassembly.py' 2024-07-24T00:03:59,124 adding 'indra/preassembler/refinement.py' 2024-07-24T00:03:59,127 adding 'indra/preassembler/sitemapper.py' 2024-07-24T00:03:59,128 adding 'indra/preassembler/grounding_mapper/__init__.py' 2024-07-24T00:03:59,130 adding 'indra/preassembler/grounding_mapper/analysis.py' 2024-07-24T00:03:59,132 adding 'indra/preassembler/grounding_mapper/disambiguate.py' 2024-07-24T00:03:59,134 adding 'indra/preassembler/grounding_mapper/gilda.py' 2024-07-24T00:03:59,137 adding 'indra/preassembler/grounding_mapper/mapper.py' 2024-07-24T00:03:59,139 adding 'indra/resources/README.txt' 2024-07-24T00:03:59,141 adding 'indra/resources/__init__.py' 2024-07-24T00:03:59,142 adding 'indra/resources/add_grounding_resources_from_csv.py' 2024-07-24T00:03:59,143 adding 'indra/resources/amino_acids.tsv' 2024-07-24T00:03:59,435 adding 'indra/resources/bel_chebi_map.tsv' 2024-07-24T00:03:59,454 adding 'indra/resources/biomappings.tsv' 2024-07-24T00:03:59,463 adding 'indra/resources/bioregistry.json' 2024-07-24T00:03:59,615 adding 'indra/resources/cas_to_chebi.tsv' 2024-07-24T00:04:01,713 adding 'indra/resources/chebi.json' 2024-07-24T00:04:02,182 adding 'indra/resources/chebi_to_chembl.tsv' 2024-07-24T00:04:02,880 adding 'indra/resources/chebi_to_pubchem.tsv' 2024-07-24T00:04:03,086 adding 'indra/resources/chembl_tas.csv' 2024-07-24T00:04:03,096 adding 'indra/resources/curated_site_map.csv' 2024-07-24T00:04:03,097 adding 'indra/resources/db_refs_map.csv' 2024-07-24T00:04:03,098 adding 'indra/resources/default_belief_probs.json' 2024-07-24T00:04:03,100 adding 'indra/resources/default_config.ini' 2024-07-24T00:04:03,366 adding 'indra/resources/doid.json' 2024-07-24T00:04:03,526 adding 'indra/resources/drugbank_mappings.tsv' 2024-07-24T00:04:03,618 adding 'indra/resources/eccode.json' 2024-07-24T00:04:03,937 adding 'indra/resources/efo.json' 2024-07-24T00:04:03,980 adding 'indra/resources/famplex_map.tsv' 2024-07-24T00:04:04,837 adding 'indra/resources/go.json' 2024-07-24T00:04:04,936 adding 'indra/resources/greek_alphabet.py' 2024-07-24T00:04:05,629 adding 'indra/resources/hgnc_entries.tsv' 2024-07-24T00:04:05,670 adding 'indra/resources/hgnc_uniprot_preferred.csv' 2024-07-24T00:04:05,695 adding 'indra/resources/hmdb_to_chebi.tsv' 2024-07-24T00:04:05,702 adding 'indra/resources/hms_lincs_extra.tsv' 2024-07-24T00:04:06,003 adding 'indra/resources/hp.json' 2024-07-24T00:04:06,040 adding 'indra/resources/identifiers_patterns.json' 2024-07-24T00:04:06,043 adding 'indra/resources/ido.json' 2024-07-24T00:04:06,045 adding 'indra/resources/index_card_schema.json' 2024-07-24T00:04:06,048 adding 'indra/resources/kinases.tsv' 2024-07-24T00:04:06,090 adding 'indra/resources/lincs_proteins.json' 2024-07-24T00:04:06,132 adding 'indra/resources/lincs_small_molecules.json' 2024-07-24T00:04:06,307 adding 'indra/resources/lspci.tsv' 2024-07-24T00:04:06,517 adding 'indra/resources/mesh_cas_mappings.tsv' 2024-07-24T00:04:07,178 adding 'indra/resources/mesh_id_label_mappings.tsv' 2024-07-24T00:04:07,416 adding 'indra/resources/mesh_mappings.tsv' 2024-07-24T00:04:10,980 adding 'indra/resources/mesh_supp_id_label_mappings.tsv' 2024-07-24T00:04:11,708 adding 'indra/resources/mgi_entries.tsv' 2024-07-24T00:04:11,788 adding 'indra/resources/mirbase.tsv' 2024-07-24T00:04:12,659 adding 'indra/resources/mondo.json' 2024-07-24T00:04:12,764 adding 'indra/resources/ncit_allele_map.tsv' 2024-07-24T00:04:12,847 adding 'indra/resources/ncit_map.tsv' 2024-07-24T00:04:12,850 adding 'indra/resources/phosphatases.tsv' 2024-07-24T00:04:13,233 adding 'indra/resources/pubchem_mesh_map.tsv' 2024-07-24T00:04:13,292 adding 'indra/resources/pubmed_retractions.tsv' 2024-07-24T00:04:13,295 adding 'indra/resources/ras_pathway_proteins.csv' 2024-07-24T00:04:13,703 adding 'indra/resources/rgd_entries.tsv' 2024-07-24T00:04:13,739 adding 'indra/resources/selventa_entries.tsv' 2024-07-24T00:04:13,741 adding 'indra/resources/source_info.json' 2024-07-24T00:04:13,743 adding 'indra/resources/source_mapping.json' 2024-07-24T00:04:13,745 adding 'indra/resources/statements_schema.json' 2024-07-24T00:04:13,751 adding 'indra/resources/transcription_factors.csv' 2024-07-24T00:04:13,753 adding 'indra/resources/uniprot_subcell_loc.tsv' 2024-07-24T00:04:13,758 adding 'indra/resources/update_resources.py' 2024-07-24T00:04:13,761 adding 'indra/resources/famplex/entities.csv' 2024-07-24T00:04:13,768 adding 'indra/resources/famplex/equivalences.csv' 2024-07-24T00:04:13,769 adding 'indra/resources/famplex/gene_prefixes.csv' 2024-07-24T00:04:13,781 adding 'indra/resources/famplex/grounding_map.csv' 2024-07-24T00:04:13,793 adding 'indra/resources/famplex/relations.csv' 2024-07-24T00:04:13,796 adding 'indra/resources/grounding/agents.json' 2024-07-24T00:04:13,797 adding 'indra/resources/grounding/covid_grounding.csv' 2024-07-24T00:04:13,798 adding 'indra/resources/grounding/extra_gmap_files.json' 2024-07-24T00:04:13,800 adding 'indra/resources/grounding/gene_grounding.csv' 2024-07-24T00:04:13,813 adding 'indra/resources/grounding/grounding_map.csv' 2024-07-24T00:04:13,815 adding 'indra/resources/grounding/ignore.csv' 2024-07-24T00:04:13,817 adding 'indra/resources/grounding/misgrounding_map.csv' 2024-07-24T00:04:13,819 adding 'indra/sources/__init__.py' 2024-07-24T00:04:13,821 adding 'indra/sources/biogrid.py' 2024-07-24T00:04:13,822 adding 'indra/sources/utils.py' 2024-07-24T00:04:13,823 adding 'indra/sources/acsn/__init__.py' 2024-07-24T00:04:13,825 adding 'indra/sources/acsn/api.py' 2024-07-24T00:04:13,826 adding 'indra/sources/acsn/processor.py' 2024-07-24T00:04:13,828 adding 'indra/sources/bel/__init__.py' 2024-07-24T00:04:13,830 adding 'indra/sources/bel/api.py' 2024-07-24T00:04:13,834 adding 'indra/sources/bel/processor.py' 2024-07-24T00:04:13,836 adding 'indra/sources/biofactoid/__init__.py' 2024-07-24T00:04:13,837 adding 'indra/sources/biofactoid/api.py' 2024-07-24T00:04:13,839 adding 'indra/sources/biofactoid/processor.py' 2024-07-24T00:04:13,840 adding 'indra/sources/biopax/__init__.py' 2024-07-24T00:04:13,842 adding 'indra/sources/biopax/api.py' 2024-07-24T00:04:13,847 adding 'indra/sources/biopax/processor.py' 2024-07-24T00:04:13,849 adding 'indra/sources/creeds/__init__.py' 2024-07-24T00:04:13,850 adding 'indra/sources/creeds/api.py' 2024-07-24T00:04:13,852 adding 'indra/sources/creeds/processor.py' 2024-07-24T00:04:13,854 adding 'indra/sources/crog/__init__.py' 2024-07-24T00:04:13,855 adding 'indra/sources/crog/__main__.py' 2024-07-24T00:04:13,856 adding 'indra/sources/crog/api.py' 2024-07-24T00:04:13,857 adding 'indra/sources/crog/processor.py' 2024-07-24T00:04:13,859 adding 'indra/sources/ctd/__init__.py' 2024-07-24T00:04:13,861 adding 'indra/sources/ctd/api.py' 2024-07-24T00:04:13,862 adding 'indra/sources/ctd/processor.py' 2024-07-24T00:04:13,864 adding 'indra/sources/dgi/__init__.py' 2024-07-24T00:04:13,865 adding 'indra/sources/dgi/__main__.py' 2024-07-24T00:04:13,867 adding 'indra/sources/dgi/api.py' 2024-07-24T00:04:13,868 adding 'indra/sources/dgi/processor.py' 2024-07-24T00:04:13,870 adding 'indra/sources/drugbank/__init__.py' 2024-07-24T00:04:13,871 adding 'indra/sources/drugbank/api.py' 2024-07-24T00:04:13,873 adding 'indra/sources/drugbank/processor.py' 2024-07-24T00:04:13,875 adding 'indra/sources/eidos/__init__.py' 2024-07-24T00:04:13,877 adding 'indra/sources/eidos/api.py' 2024-07-24T00:04:13,878 adding 'indra/sources/eidos/bio_processor.py' 2024-07-24T00:04:13,880 adding 'indra/sources/eidos/cli.py' 2024-07-24T00:04:13,881 adding 'indra/sources/eidos/client.py' 2024-07-24T00:04:13,883 adding 'indra/sources/eidos/processor.py' 2024-07-24T00:04:13,884 adding 'indra/sources/eidos/reader.py' 2024-07-24T00:04:13,886 adding 'indra/sources/eidos/server.py' 2024-07-24T00:04:13,887 adding 'indra/sources/geneways/__init__.py' 2024-07-24T00:04:13,889 adding 'indra/sources/geneways/action_parser.py' 2024-07-24T00:04:13,890 adding 'indra/sources/geneways/actionmention_parser.py' 2024-07-24T00:04:13,891 adding 'indra/sources/geneways/api.py' 2024-07-24T00:04:13,893 adding 'indra/sources/geneways/find_full_text_sentence.py' 2024-07-24T00:04:13,894 adding 'indra/sources/geneways/processor.py' 2024-07-24T00:04:13,896 adding 'indra/sources/geneways/symbols_parser.py' 2024-07-24T00:04:13,898 adding 'indra/sources/gnbr/__init__.py' 2024-07-24T00:04:13,899 adding 'indra/sources/gnbr/api.py' 2024-07-24T00:04:13,901 adding 'indra/sources/gnbr/processor.py' 2024-07-24T00:04:13,902 adding 'indra/sources/hprd/__init__.py' 2024-07-24T00:04:13,904 adding 'indra/sources/hprd/api.py' 2024-07-24T00:04:13,906 adding 'indra/sources/hprd/processor.py' 2024-07-24T00:04:13,908 adding 'indra/sources/hypothesis/__init__.py' 2024-07-24T00:04:13,909 adding 'indra/sources/hypothesis/annotator.py' 2024-07-24T00:04:13,911 adding 'indra/sources/hypothesis/api.py' 2024-07-24T00:04:13,912 adding 'indra/sources/hypothesis/processor.py' 2024-07-24T00:04:13,914 adding 'indra/sources/index_cards/__init__.py' 2024-07-24T00:04:13,916 adding 'indra/sources/index_cards/processor.py' 2024-07-24T00:04:13,918 adding 'indra/sources/indra_db_rest/__init__.py' 2024-07-24T00:04:13,922 adding 'indra/sources/indra_db_rest/api.py' 2024-07-24T00:04:13,923 adding 'indra/sources/indra_db_rest/exceptions.py' 2024-07-24T00:04:13,925 adding 'indra/sources/indra_db_rest/processor.py' 2024-07-24T00:04:13,928 adding 'indra/sources/indra_db_rest/query.py' 2024-07-24T00:04:13,930 adding 'indra/sources/indra_db_rest/query_results.py' 2024-07-24T00:04:13,931 adding 'indra/sources/indra_db_rest/util.py' 2024-07-24T00:04:13,933 adding 'indra/sources/isi/__init__.py' 2024-07-24T00:04:13,935 adding 'indra/sources/isi/api.py' 2024-07-24T00:04:13,937 adding 'indra/sources/isi/experiments.py' 2024-07-24T00:04:13,938 adding 'indra/sources/isi/isi_verb_to_indra_statement_type.tsv' 2024-07-24T00:04:13,939 adding 'indra/sources/isi/preprocessor.py' 2024-07-24T00:04:13,941 adding 'indra/sources/isi/processor.py' 2024-07-24T00:04:13,943 adding 'indra/sources/minerva/__init__.py' 2024-07-24T00:04:13,944 adding 'indra/sources/minerva/api.py' 2024-07-24T00:04:13,945 adding 'indra/sources/minerva/id_mapping.py' 2024-07-24T00:04:13,947 adding 'indra/sources/minerva/minerva_client.py' 2024-07-24T00:04:13,948 adding 'indra/sources/minerva/processor.py' 2024-07-24T00:04:13,950 adding 'indra/sources/ndex_cx/__init__.py' 2024-07-24T00:04:13,951 adding 'indra/sources/ndex_cx/api.py' 2024-07-24T00:04:13,953 adding 'indra/sources/ndex_cx/processor.py' 2024-07-24T00:04:13,955 adding 'indra/sources/omnipath/__init__.py' 2024-07-24T00:04:13,956 adding 'indra/sources/omnipath/api.py' 2024-07-24T00:04:13,958 adding 'indra/sources/omnipath/processor.py' 2024-07-24T00:04:13,959 adding 'indra/sources/phosphoelm/__init__.py' 2024-07-24T00:04:13,961 adding 'indra/sources/phosphoelm/api.py' 2024-07-24T00:04:13,962 adding 'indra/sources/phosphoelm/phosphoelm_mapping.py' 2024-07-24T00:04:13,963 adding 'indra/sources/phosphoelm/processor.py' 2024-07-24T00:04:13,966 adding 'indra/sources/reach/__init__.py' 2024-07-24T00:04:13,968 adding 'indra/sources/reach/api.py' 2024-07-24T00:04:13,973 adding 'indra/sources/reach/processor.py' 2024-07-24T00:04:13,975 adding 'indra/sources/reach/reach_rule_regexps.txt' 2024-07-24T00:04:13,976 adding 'indra/sources/reach/reader.py' 2024-07-24T00:04:13,978 adding 'indra/sources/rlimsp/__init__.py' 2024-07-24T00:04:13,979 adding 'indra/sources/rlimsp/api.py' 2024-07-24T00:04:13,981 adding 'indra/sources/rlimsp/processor.py' 2024-07-24T00:04:13,982 adding 'indra/sources/semrep/Dockerfile' 2024-07-24T00:04:13,984 adding 'indra/sources/semrep/__init__.py' 2024-07-24T00:04:13,985 adding 'indra/sources/semrep/api.py' 2024-07-24T00:04:13,986 adding 'indra/sources/semrep/processor.py' 2024-07-24T00:04:13,988 adding 'indra/sources/signor/__init__.py' 2024-07-24T00:04:13,989 adding 'indra/sources/signor/api.py' 2024-07-24T00:04:13,992 adding 'indra/sources/signor/processor.py' 2024-07-24T00:04:13,994 adding 'indra/sources/sparser/__init__.py' 2024-07-24T00:04:13,995 adding 'indra/sources/sparser/api.py' 2024-07-24T00:04:13,997 adding 'indra/sources/sparser/processor.py' 2024-07-24T00:04:13,999 adding 'indra/sources/sparser/xml_processor.py' 2024-07-24T00:04:14,001 adding 'indra/sources/tas/__init__.py' 2024-07-24T00:04:14,002 adding 'indra/sources/tas/api.py' 2024-07-24T00:04:14,004 adding 'indra/sources/tas/processor.py' 2024-07-24T00:04:14,005 adding 'indra/sources/tees/__init__.py' 2024-07-24T00:04:14,007 adding 'indra/sources/tees/api.py' 2024-07-24T00:04:14,009 adding 'indra/sources/tees/parse_tees.py' 2024-07-24T00:04:14,011 adding 'indra/sources/tees/processor.py' 2024-07-24T00:04:14,013 adding 'indra/sources/trips/__init__.py' 2024-07-24T00:04:14,014 adding 'indra/sources/trips/analyze_ekbs.py' 2024-07-24T00:04:14,016 adding 'indra/sources/trips/api.py' 2024-07-24T00:04:14,017 adding 'indra/sources/trips/client.py' 2024-07-24T00:04:14,019 adding 'indra/sources/trips/drum_reader.py' 2024-07-24T00:04:14,028 adding 'indra/sources/trips/processor.py' 2024-07-24T00:04:14,031 adding 'indra/sources/trrust/__init__.py' 2024-07-24T00:04:14,032 adding 'indra/sources/trrust/api.py' 2024-07-24T00:04:14,033 adding 'indra/sources/trrust/processor.py' 2024-07-24T00:04:14,035 adding 'indra/sources/ubibrowser/__init__.py' 2024-07-24T00:04:14,036 adding 'indra/sources/ubibrowser/api.py' 2024-07-24T00:04:14,037 adding 'indra/sources/ubibrowser/processor.py' 2024-07-24T00:04:14,039 adding 'indra/sources/virhostnet/__init__.py' 2024-07-24T00:04:14,040 adding 'indra/sources/virhostnet/api.py' 2024-07-24T00:04:14,042 adding 'indra/sources/virhostnet/processor.py' 2024-07-24T00:04:14,044 adding 'indra/statements/__init__.py' 2024-07-24T00:04:14,047 adding 'indra/statements/agent.py' 2024-07-24T00:04:14,048 adding 'indra/statements/concept.py' 2024-07-24T00:04:14,050 adding 'indra/statements/context.py' 2024-07-24T00:04:14,052 adding 'indra/statements/delta.py' 2024-07-24T00:04:14,054 adding 'indra/statements/evidence.py' 2024-07-24T00:04:14,056 adding 'indra/statements/io.py' 2024-07-24T00:04:14,057 adding 'indra/statements/resources.py' 2024-07-24T00:04:14,067 adding 'indra/statements/statements.py' 2024-07-24T00:04:14,069 adding 'indra/statements/util.py' 2024-07-24T00:04:14,071 adding 'indra/statements/validate.py' 2024-07-24T00:04:14,074 adding 'indra/tests/__init__.py' 2024-07-24T00:04:14,075 adding 'indra/tests/conftest.py' 2024-07-24T00:04:14,077 adding 'indra/tests/make_mock_ontology.py' 2024-07-24T00:04:14,078 adding 'indra/tests/test_acsn.py' 2024-07-24T00:04:14,079 adding 'indra/tests/test_adaptive_assembly.py' 2024-07-24T00:04:14,081 adding 'indra/tests/test_adeft_tools.py' 2024-07-24T00:04:14,084 adding 'indra/tests/test_assemble_corpus.py' 2024-07-24T00:04:14,086 adding 'indra/tests/test_belief_engine.py' 2024-07-24T00:04:14,088 adding 'indra/tests/test_belief_sklearn.py' 2024-07-24T00:04:14,089 adding 'indra/tests/test_benchmarks.py' 2024-07-24T00:04:14,091 adding 'indra/tests/test_biofactoid.py' 2024-07-24T00:04:14,092 adding 'indra/tests/test_biogrid.py' 2024-07-24T00:04:14,093 adding 'indra/tests/test_biolookup_client.py' 2024-07-24T00:04:14,094 adding 'indra/tests/test_biopax.py' 2024-07-24T00:04:14,096 adding 'indra/tests/test_bioregistry.py' 2024-07-24T00:04:14,097 adding 'indra/tests/test_bmi_wrapper.py' 2024-07-24T00:04:14,098 adding 'indra/tests/test_cbio_client.py' 2024-07-24T00:04:14,099 adding 'indra/tests/test_chebi_client.py' 2024-07-24T00:04:14,100 adding 'indra/tests/test_chembl_client.py' 2024-07-24T00:04:14,101 adding 'indra/tests/test_coci_client.py' 2024-07-24T00:04:14,103 adding 'indra/tests/test_context.py' 2024-07-24T00:04:14,104 adding 'indra/tests/test_crossref_client.py' 2024-07-24T00:04:14,105 adding 'indra/tests/test_ctd.py' 2024-07-24T00:04:14,106 adding 'indra/tests/test_custom_preassembly.py' 2024-07-24T00:04:14,107 adding 'indra/tests/test_cx_assembler.py' 2024-07-24T00:04:14,109 adding 'indra/tests/test_cyjs_assembler.py' 2024-07-24T00:04:14,110 adding 'indra/tests/test_db_rest.py' 2024-07-24T00:04:14,112 adding 'indra/tests/test_delta.py' 2024-07-24T00:04:14,114 adding 'indra/tests/test_docs_code.py' 2024-07-24T00:04:14,115 adding 'indra/tests/test_drugbank.py' 2024-07-24T00:04:14,116 adding 'indra/tests/test_eidos.py' 2024-07-24T00:04:14,118 adding 'indra/tests/test_elsevier_client.py' 2024-07-24T00:04:14,120 adding 'indra/tests/test_english_assembler.py' 2024-07-24T00:04:14,121 adding 'indra/tests/test_expand_families.py' 2024-07-24T00:04:14,122 adding 'indra/tests/test_fix_invalidities.py' 2024-07-24T00:04:14,123 adding 'indra/tests/test_geneways.py' 2024-07-24T00:04:14,125 adding 'indra/tests/test_gnbr.py' 2024-07-24T00:04:14,126 adding 'indra/tests/test_go_client.py' 2024-07-24T00:04:14,127 adding 'indra/tests/test_graph_assembler.py' 2024-07-24T00:04:14,128 adding 'indra/tests/test_grounding_resources.py' 2024-07-24T00:04:14,131 adding 'indra/tests/test_groundingmapper.py' 2024-07-24T00:04:14,132 adding 'indra/tests/test_hgnc_client.py' 2024-07-24T00:04:14,134 adding 'indra/tests/test_hprd.py' 2024-07-24T00:04:14,137 adding 'indra/tests/test_html_assembler.py' 2024-07-24T00:04:14,138 adding 'indra/tests/test_hypothesis.py' 2024-07-24T00:04:14,140 adding 'indra/tests/test_identifiers.py' 2024-07-24T00:04:14,141 adding 'indra/tests/test_incremental_model.py' 2024-07-24T00:04:14,143 adding 'indra/tests/test_index_card_assembler.py' 2024-07-24T00:04:14,144 adding 'indra/tests/test_indranet_assembler.py' 2024-07-24T00:04:14,146 adding 'indra/tests/test_isi.py' 2024-07-24T00:04:14,147 adding 'indra/tests/test_json_schema.py' 2024-07-24T00:04:14,148 adding 'indra/tests/test_kami_assembler.py' 2024-07-24T00:04:14,150 adding 'indra/tests/test_kappa_util.py' 2024-07-24T00:04:14,151 adding 'indra/tests/test_lincs_client.py' 2024-07-24T00:04:14,152 adding 'indra/tests/test_literature.py' 2024-07-24T00:04:14,154 adding 'indra/tests/test_mechlinker.py' 2024-07-24T00:04:14,156 adding 'indra/tests/test_medscan.py' 2024-07-24T00:04:14,157 adding 'indra/tests/test_mesh.py' 2024-07-24T00:04:14,158 adding 'indra/tests/test_mgi_client.py' 2024-07-24T00:04:14,160 adding 'indra/tests/test_minerva.py' 2024-07-24T00:04:14,161 adding 'indra/tests/test_mirbase_client.py' 2024-07-24T00:04:14,168 adding 'indra/tests/test_model_checker.py' 2024-07-24T00:04:14,170 adding 'indra/tests/test_ndex_client.py' 2024-07-24T00:04:14,171 adding 'indra/tests/test_ndex_cx_processor.py' 2024-07-24T00:04:14,172 adding 'indra/tests/test_omnipath.py' 2024-07-24T00:04:14,174 adding 'indra/tests/test_ontology.py' 2024-07-24T00:04:14,177 adding 'indra/tests/test_pathfinding.py' 2024-07-24T00:04:14,178 adding 'indra/tests/test_phosphoelm_processor.py' 2024-07-24T00:04:14,180 adding 'indra/tests/test_pipeline.py' 2024-07-24T00:04:14,181 adding 'indra/tests/test_pmc_client.py' 2024-07-24T00:04:14,186 adding 'indra/tests/test_preassembler.py' 2024-07-24T00:04:14,187 adding 'indra/tests/test_pubchem_client.py' 2024-07-24T00:04:14,188 adding 'indra/tests/test_pubmed_client.py' 2024-07-24T00:04:14,191 adding 'indra/tests/test_pybel_api.py' 2024-07-24T00:04:14,194 adding 'indra/tests/test_pybel_assembler.py' 2024-07-24T00:04:14,198 adding 'indra/tests/test_pysb_assembler.py' 2024-07-24T00:04:14,200 adding 'indra/tests/test_rasmachine.py' 2024-07-24T00:04:14,202 adding 'indra/tests/test_reach.py' 2024-07-24T00:04:14,205 adding 'indra/tests/test_rest_api.py' 2024-07-24T00:04:14,207 adding 'indra/tests/test_rgd_client.py' 2024-07-24T00:04:14,208 adding 'indra/tests/test_rlimsp.py' 2024-07-24T00:04:14,209 adding 'indra/tests/test_s3_client.py' 2024-07-24T00:04:14,210 adding 'indra/tests/test_sbgn_assembler.py' 2024-07-24T00:04:14,211 adding 'indra/tests/test_sif_assembler.py' 2024-07-24T00:04:14,214 adding 'indra/tests/test_signor.py' 2024-07-24T00:04:14,216 adding 'indra/tests/test_sitemapper.py' 2024-07-24T00:04:14,217 adding 'indra/tests/test_sparser.py' 2024-07-24T00:04:14,218 adding 'indra/tests/test_sparser_xml.py' 2024-07-24T00:04:14,220 adding 'indra/tests/test_statement_validate.py' 2024-07-24T00:04:14,226 adding 'indra/tests/test_statements.py' 2024-07-24T00:04:14,228 adding 'indra/tests/test_statements_serialization.py' 2024-07-24T00:04:14,229 adding 'indra/tests/test_tas.py' 2024-07-24T00:04:14,230 adding 'indra/tests/test_taxonomy_client.py' 2024-07-24T00:04:14,232 adding 'indra/tests/test_tees.py' 2024-07-24T00:04:14,233 adding 'indra/tests/test_trips.py' 2024-07-24T00:04:14,236 adding 'indra/tests/test_trips_ekbs.py' 2024-07-24T00:04:14,237 adding 'indra/tests/test_trrust.py' 2024-07-24T00:04:14,238 adding 'indra/tests/test_tsv_assembler.py' 2024-07-24T00:04:14,239 adding 'indra/tests/test_uniprot_client.py' 2024-07-24T00:04:14,241 adding 'indra/tests/test_util.py' 2024-07-24T00:04:14,242 adding 'indra/tests/test_virhostnet.py' 2024-07-24T00:04:14,243 adding 'indra/tests/util.py' 2024-07-24T00:04:14,245 adding 'indra/tests/test_obo_clients/__init__.py' 2024-07-24T00:04:14,246 adding 'indra/tests/test_obo_clients/test_doid_client.py' 2024-07-24T00:04:14,247 adding 'indra/tests/test_obo_clients/test_ec_client.py' 2024-07-24T00:04:14,248 adding 'indra/tests/test_obo_clients/test_efo_client.py' 2024-07-24T00:04:14,249 adding 'indra/tests/test_obo_clients/test_hp_client.py' 2024-07-24T00:04:14,251 adding 'indra/tests/test_obo_clients/test_ido_client.py' 2024-07-24T00:04:14,252 adding 'indra/tests/test_obo_clients/test_mondo_client.py' 2024-07-24T00:04:14,254 adding 'indra/tools/__init__.py' 2024-07-24T00:04:14,255 adding 'indra/tools/adaptive_assembly.py' 2024-07-24T00:04:14,256 adding 'indra/tools/analyze_ontology.py' 2024-07-24T00:04:14,265 adding 'indra/tools/assemble_corpus.py' 2024-07-24T00:04:14,266 adding 'indra/tools/executable_subnetwork.py' 2024-07-24T00:04:14,268 adding 'indra/tools/expand_families.py' 2024-07-24T00:04:14,269 adding 'indra/tools/extract_grounding_map.py' 2024-07-24T00:04:14,271 adding 'indra/tools/fix_invalidities.py' 2024-07-24T00:04:14,273 adding 'indra/tools/gene_network.py' 2024-07-24T00:04:14,274 adding 'indra/tools/hypothesis_annotator.py' 2024-07-24T00:04:14,276 adding 'indra/tools/incremental_model.py' 2024-07-24T00:04:14,277 adding 'indra/tools/mechlinker_queries.py' 2024-07-24T00:04:14,279 adding 'indra/tools/machine/__init__.py' 2024-07-24T00:04:14,280 adding 'indra/tools/machine/__main__.py' 2024-07-24T00:04:14,282 adding 'indra/tools/machine/cli.py' 2024-07-24T00:04:14,283 adding 'indra/tools/machine/config.py' 2024-07-24T00:04:14,284 adding 'indra/tools/machine/default-config.yaml' 2024-07-24T00:04:14,285 adding 'indra/tools/machine/gmail_client.py' 2024-07-24T00:04:14,288 adding 'indra/tools/machine/machine.py' 2024-07-24T00:04:14,290 adding 'indra/tools/machine/twitter_client.py' 2024-07-24T00:04:14,292 adding 'indra/util/__init__.py' 2024-07-24T00:04:14,293 adding 'indra/util/_require_python3.py' 2024-07-24T00:04:14,296 adding 'indra/util/aws.py' 2024-07-24T00:04:14,298 adding 'indra/util/get_version.py' 2024-07-24T00:04:14,299 adding 'indra/util/multiprocessing_traceback.py' 2024-07-24T00:04:14,300 adding 'indra/util/nested_dict.py' 2024-07-24T00:04:14,302 adding 'indra/util/perm_cache.py' 2024-07-24T00:04:14,303 adding 'indra/util/plot_formatting.py' 2024-07-24T00:04:14,304 adding 'indra/util/repickle_stmts.py' 2024-07-24T00:04:14,309 adding 'indra/util/statement_presentation.py' 2024-07-24T00:04:14,312 adding 'indra-1.23.0.dist-info/LICENSE' 2024-07-24T00:04:14,315 adding 'indra-1.23.0.dist-info/METADATA' 2024-07-24T00:04:14,316 adding 'indra-1.23.0.dist-info/WHEEL' 2024-07-24T00:04:14,317 adding 'indra-1.23.0.dist-info/entry_points.txt' 2024-07-24T00:04:14,318 adding 'indra-1.23.0.dist-info/top_level.txt' 2024-07-24T00:04:14,325 adding 'indra-1.23.0.dist-info/RECORD' 2024-07-24T00:04:14,775 removing build/bdist.linux-armv7l/wheel 2024-07-24T00:04:15,076 Building wheel for indra (setup.py): finished with status 'done' 2024-07-24T00:04:15,509 Created wheel for indra: filename=indra-1.23.0-py3-none-any.whl size=43979463 sha256=566a2bf23d0345015b4a4c3356f83873c8aeb0d90a921446eb513bace0f86d0a 2024-07-24T00:04:15,510 Stored in directory: /tmp/pip-ephem-wheel-cache-r18k5w1j/wheels/2d/18/83/9f261cce7966900cd4a27b521130a1eaeb781faa855587ac9c 2024-07-24T00:04:15,553 Successfully built indra 2024-07-24T00:04:16,581 Removed build tracker: '/tmp/pip-build-tracker-_i9n8m8p'