2024-07-29T19:27:10,048 Created temporary directory: /tmp/pip-build-tracker-hg_bq8wo 2024-07-29T19:27:10,049 Initialized build tracking at /tmp/pip-build-tracker-hg_bq8wo 2024-07-29T19:27:10,050 Created build tracker: /tmp/pip-build-tracker-hg_bq8wo 2024-07-29T19:27:10,050 Entered build tracker: /tmp/pip-build-tracker-hg_bq8wo 2024-07-29T19:27:10,051 Created temporary directory: /tmp/pip-wheel-dmjzpahy 2024-07-29T19:27:10,055 Created temporary directory: /tmp/pip-ephem-wheel-cache-k1y8843f 2024-07-29T19:27:10,086 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-29T19:27:10,089 2 location(s) to search for versions of nmdc-runtime: 2024-07-29T19:27:10,089 * https://pypi.org/simple/nmdc-runtime/ 2024-07-29T19:27:10,089 * https://www.piwheels.org/simple/nmdc-runtime/ 2024-07-29T19:27:10,089 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2024-07-29T19:27:10,090 Getting page https://pypi.org/simple/nmdc-runtime/ 2024-07-29T19:27:10,092 Found index url https://pypi.org/simple/ 2024-07-29T19:27:10,195 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2024-07-29T19:27:10,206 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-07-29T19:27:10,208 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2024-07-29T19:27:10,208 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-07-29T19:27:10,209 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2024-07-29T19:27:10,210 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-07-29T19:27:10,211 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2024-07-29T19:27:10,212 Skipping link: No binaries permitted for nmdc-runtime: 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https://files.pythonhosted.org/packages/73/08/56746d739798869d3ed33ac1e8685a044effc638e5f60e0989334e3df803/nmdc_runtime-1.0.12.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.12 2024-07-29T19:27:10,229 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/7c/80/a8c1f0d64d6a38faa36be239477f893488fa2e80bbd9d3699996544fd35a/nmdc_runtime-1.0.13-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,230 Found link https://files.pythonhosted.org/packages/dd/eb/a7a49613cffd4d9835cacbb61b9b8b682346b7f7257b025e6faa922f3106/nmdc_runtime-1.0.13.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.13 2024-07-29T19:27:10,231 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/17/8d/0c38aaa9d5581eda908809321eb9218b90b859c2087483513edfe30e0ae9/nmdc_runtime-1.0.14-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,231 Found link https://files.pythonhosted.org/packages/aa/6b/6e5ecdb95c3060c389779c16813ebbd437c61519d0c923bec953b80f8b6e/nmdc_runtime-1.0.14.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.14 2024-07-29T19:27:10,232 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/24/60/40b5389c4d34db0aefc25a4f407a1965d297a51ce443ffcc54fcf5f0a30f/nmdc_runtime-1.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,233 Found link https://files.pythonhosted.org/packages/f1/af/d3edeb153597d1918967ef00cf6be6621c21043ba1549fa0f37273a01a7d/nmdc_runtime-1.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.1.0 2024-07-29T19:27:10,233 Skipping link: No binaries permitted for nmdc-runtime: 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version: 1.3.0 2024-07-29T19:27:10,237 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c8/c2/1f5e8d8d256e40a4e0d8cbad5fab81c25be0ada15c476e620a63675b50b6/nmdc_runtime-1.3.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,238 Found link https://files.pythonhosted.org/packages/56/c2/c4984f6a63857d1d70ef9582399dbea65ef4a1a88da674a87edb58496b54/nmdc_runtime-1.3.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.3.1 2024-07-29T19:27:10,238 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/8c/8d/89cf7fa867334d4cd9f849f97c8d623b65c346d6a6f83ba2e046e11315e6/nmdc_runtime-1.4.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,239 Found link 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https://files.pythonhosted.org/packages/db/47/2afb6a3406b34190c7086be19bbdceea8fb377bbb29e2c9ad25507b8007a/nmdc_runtime-1.6.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,246 Found link https://files.pythonhosted.org/packages/fe/17/a39c3f09d5293e873e952dbeddd435631405f9b87f98ed3d6701f558d657/nmdc_runtime-1.6.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.6.0 2024-07-29T19:27:10,247 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/b3/2f/c48817497df8b7922a31341860f3029b0269cb2b4f6d4725c55007c14fd8/nmdc_runtime-1.7.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,247 Found link https://files.pythonhosted.org/packages/e6/11/a6f7e020fa47cadb28972e41e1df5c120f7fa9977a41f7c251442b941001/nmdc_runtime-1.7.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.7.0 2024-07-29T19:27:10,248 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/7d/fc/35f5616c87cb148789b8c636a11333d71902cd218895c94acee56e5e7979/nmdc_runtime-1.8.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,249 Found link https://files.pythonhosted.org/packages/80/64/f0a15d5171e9242f322a0b4e4b9cb4e334fe2805aeccb8a21749575f2ca9/nmdc_runtime-1.8.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.8.0 2024-07-29T19:27:10,250 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2024-07-29T19:27:10,251 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2024-07-29T19:27:10,253 Found index url https://www.piwheels.org/simple/ 2024-07-29T19:27:10,303 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2024-07-29T19:27:10,311 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.7.0-py3-none-any.whl#sha256=3103fc7a5156dd9c0cf2d9cf92ef6bee585e25e126a0d0b4a9ace6e1344e8823 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,312 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.6.0-py3-none-any.whl#sha256=d7d4c1c29da4c0d3d5912df92ae1aaeed44aa0b72bb1201efcdee74c5a0b9542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,313 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.4.2-py3-none-any.whl#sha256=1a519af1939692b35d8139c1d1c7b24a696479dc8d4cfe7d575e7ef6db175160 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,313 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.4.1-py3-none-any.whl#sha256=7514bd832aaa945a66441e2ea0c6a5b9adb695265277283906d3c3f89ffa14ea (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,314 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.4.0-py3-none-any.whl#sha256=c0c1857be281c9b6ba47add0c81335aa1e028ec936f71bade6f813c0e07ef9a5 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,314 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.3.1-py3-none-any.whl#sha256=e834d6af867ba48cdb583ced165576b8822b7deac757a402baf9864304792e0d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,314 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.3.0-py3-none-any.whl#sha256=0470dc180053c632fdedb5c4790ae0a3c0a29166f757dbe51f2e9bb5016d728e (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,315 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.2.0-py3-none-any.whl#sha256=21a501b7fa193fe956a1a992fdcd4388ae80f57fa6354e14e2855edde761c39d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,315 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.1.0-py3-none-any.whl#sha256=d53b1a410a95e2e14bfd7a88dd3ea3163a079acd47eb8f2b197e6aef02689ac3 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,316 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.14-py3-none-any.whl#sha256=7ea5bd4e9b9348aee578b0f6c64bdc35467a36da334a44d91c50fa1417405f13 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,317 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.13-py3-none-any.whl#sha256=31d876ee80407dc4049b210ed8c017b77723f7ad78bf89ea9ef8b07f1ea8682a (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,317 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.12-py3-none-any.whl#sha256=87d81eb829ad73563e0fa371336f03d59417e00c9dcc12d943738fa67c0287fc (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,318 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.11-py3-none-any.whl#sha256=b48456c6ad565bcca33642f19ca745d5e57105419ae1dc96efb9f51b349e7fbd (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,318 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.10-py3-none-any.whl#sha256=9575befdcc66f9de5c0c08719aa4e5986f3b8d6ec2ad11a8a8f0595ceb4b17bf (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,319 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.9-py3-none-any.whl#sha256=22b2fbd19c0c6b4fb04444a368d8051e3dfd8d8198d378f00d29177d8b6daf8e (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,319 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.8-py3-none-any.whl#sha256=b2b81313cc150e7186a150993c0df3fddcce6c61142bce79e1e6a73f689c8caa (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,320 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.7-py3-none-any.whl#sha256=bab6ec3cffaa34d52dc0205b83159f6e923847ddfdf494b0c93160e3ba061723 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,321 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.6-py3-none-any.whl#sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,321 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,321 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2024-07-29T19:27:10,322 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-07-29T19:27:10,323 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-07-29T19:27:10,323 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-07-29T19:27:10,324 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2024-07-29T19:27:10,325 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2024-07-29T19:27:10,325 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2024-07-29T19:27:10,349 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2024-07-29T19:27:10,368 Collecting nmdc-runtime==1.8.0 2024-07-29T19:27:10,371 Created temporary directory: /tmp/pip-unpack-42gbbroa 2024-07-29T19:27:10,744 Downloading nmdc_runtime-1.8.0.tar.gz (63.6 MB) 2024-07-29T19:27:22,979 Added nmdc-runtime==1.8.0 from https://files.pythonhosted.org/packages/80/64/f0a15d5171e9242f322a0b4e4b9cb4e334fe2805aeccb8a21749575f2ca9/nmdc_runtime-1.8.0.tar.gz to build tracker '/tmp/pip-build-tracker-hg_bq8wo' 2024-07-29T19:27:22,981 Running setup.py (path:/tmp/pip-wheel-dmjzpahy/nmdc-runtime_43f16521f3734faeaa399ba41c57e32f/setup.py) egg_info for package nmdc-runtime 2024-07-29T19:27:22,982 Created temporary directory: /tmp/pip-pip-egg-info-jkz92iyr 2024-07-29T19:27:22,982 Preparing metadata (setup.py): started 2024-07-29T19:27:22,983 Running command python setup.py egg_info 2024-07-29T19:27:23,782 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-07-29T19:27:23,782 !! 2024-07-29T19:27:23,783 ******************************************************************************** 2024-07-29T19:27:23,784 Requirements should be satisfied by a PEP 517 installer. 2024-07-29T19:27:23,784 If you are using pip, you can try `pip install --use-pep517`. 2024-07-29T19:27:23,785 ******************************************************************************** 2024-07-29T19:27:23,786 !! 2024-07-29T19:27:23,786 dist.fetch_build_eggs(dist.setup_requires) 2024-07-29T19:27:26,712 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2024-07-29T19:27:26,713 Traceback (most recent call last): 2024-07-29T19:27:26,713 File "/tmp/pip-wheel-dmjzpahy/nmdc-runtime_43f16521f3734faeaa399ba41c57e32f/.eggs/setuptools_scm-8.1.0-py3.11.egg/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject 2024-07-29T19:27:26,714 section = defn.get("tool", {})[tool_name] 2024-07-29T19:27:26,714 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2024-07-29T19:27:26,715 KeyError: 'setuptools_scm' 2024-07-29T19:27:26,818 running egg_info 2024-07-29T19:27:26,820 creating /tmp/pip-pip-egg-info-jkz92iyr/nmdc_runtime.egg-info 2024-07-29T19:27:26,849 writing /tmp/pip-pip-egg-info-jkz92iyr/nmdc_runtime.egg-info/PKG-INFO 2024-07-29T19:27:26,852 writing dependency_links to /tmp/pip-pip-egg-info-jkz92iyr/nmdc_runtime.egg-info/dependency_links.txt 2024-07-29T19:27:26,854 writing entry points to /tmp/pip-pip-egg-info-jkz92iyr/nmdc_runtime.egg-info/entry_points.txt 2024-07-29T19:27:26,855 writing top-level names to /tmp/pip-pip-egg-info-jkz92iyr/nmdc_runtime.egg-info/top_level.txt 2024-07-29T19:27:26,857 writing manifest file '/tmp/pip-pip-egg-info-jkz92iyr/nmdc_runtime.egg-info/SOURCES.txt' 2024-07-29T19:27:27,060 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-07-29T19:27:27,067 reading manifest file '/tmp/pip-pip-egg-info-jkz92iyr/nmdc_runtime.egg-info/SOURCES.txt' 2024-07-29T19:27:27,069 adding license file 'LICENSE' 2024-07-29T19:27:27,072 writing manifest file '/tmp/pip-pip-egg-info-jkz92iyr/nmdc_runtime.egg-info/SOURCES.txt' 2024-07-29T19:27:27,193 Preparing metadata (setup.py): finished with status 'done' 2024-07-29T19:27:27,197 Source in /tmp/pip-wheel-dmjzpahy/nmdc-runtime_43f16521f3734faeaa399ba41c57e32f has version 1.8.0, which satisfies requirement nmdc-runtime==1.8.0 from https://files.pythonhosted.org/packages/80/64/f0a15d5171e9242f322a0b4e4b9cb4e334fe2805aeccb8a21749575f2ca9/nmdc_runtime-1.8.0.tar.gz 2024-07-29T19:27:27,198 Removed nmdc-runtime==1.8.0 from https://files.pythonhosted.org/packages/80/64/f0a15d5171e9242f322a0b4e4b9cb4e334fe2805aeccb8a21749575f2ca9/nmdc_runtime-1.8.0.tar.gz from build tracker '/tmp/pip-build-tracker-hg_bq8wo' 2024-07-29T19:27:27,204 Created temporary directory: /tmp/pip-unpack-85w0qwio 2024-07-29T19:27:27,205 Created temporary directory: /tmp/pip-unpack-606h7zyo 2024-07-29T19:27:27,205 Building wheels for collected packages: nmdc-runtime 2024-07-29T19:27:27,209 Created temporary directory: /tmp/pip-wheel-6213lvk9 2024-07-29T19:27:27,210 Building wheel for nmdc-runtime (setup.py): started 2024-07-29T19:27:27,211 Destination directory: /tmp/pip-wheel-6213lvk9 2024-07-29T19:27:27,212 Running command python setup.py bdist_wheel 2024-07-29T19:27:27,971 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:85: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2024-07-29T19:27:27,971 !! 2024-07-29T19:27:27,972 ******************************************************************************** 2024-07-29T19:27:27,972 Requirements should be satisfied by a PEP 517 installer. 2024-07-29T19:27:27,973 If you are using pip, you can try `pip install --use-pep517`. 2024-07-29T19:27:27,973 ******************************************************************************** 2024-07-29T19:27:27,974 !! 2024-07-29T19:27:27,975 dist.fetch_build_eggs(dist.setup_requires) 2024-07-29T19:27:28,546 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2024-07-29T19:27:28,547 Traceback (most recent call last): 2024-07-29T19:27:28,547 File "/tmp/pip-wheel-dmjzpahy/nmdc-runtime_43f16521f3734faeaa399ba41c57e32f/.eggs/setuptools_scm-8.1.0-py3.11.egg/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject 2024-07-29T19:27:28,547 section = defn.get("tool", {})[tool_name] 2024-07-29T19:27:28,548 ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ 2024-07-29T19:27:28,549 KeyError: 'setuptools_scm' 2024-07-29T19:27:28,620 running bdist_wheel 2024-07-29T19:27:28,766 running build 2024-07-29T19:27:28,767 running build_py 2024-07-29T19:27:28,799 creating build 2024-07-29T19:27:28,799 creating build/lib 2024-07-29T19:27:28,800 creating build/lib/nmdc_runtime 2024-07-29T19:27:28,801 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2024-07-29T19:27:28,803 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2024-07-29T19:27:28,805 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2024-07-29T19:27:28,807 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2024-07-29T19:27:28,809 creating build/lib/nmdc_runtime/domain 2024-07-29T19:27:28,810 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2024-07-29T19:27:28,812 creating build/lib/nmdc_runtime/site 2024-07-29T19:27:28,813 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2024-07-29T19:27:28,815 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2024-07-29T19:27:28,817 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2024-07-29T19:27:28,818 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2024-07-29T19:27:28,821 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2024-07-29T19:27:28,824 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2024-07-29T19:27:28,827 creating build/lib/nmdc_runtime/client 2024-07-29T19:27:28,828 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2024-07-29T19:27:28,830 creating build/lib/nmdc_runtime/core 2024-07-29T19:27:28,831 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2024-07-29T19:27:28,833 creating build/lib/nmdc_runtime/lib 2024-07-29T19:27:28,834 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2024-07-29T19:27:28,836 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2024-07-29T19:27:28,838 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2024-07-29T19:27:28,841 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2024-07-29T19:27:28,843 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2024-07-29T19:27:28,845 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2024-07-29T19:27:28,847 creating build/lib/nmdc_runtime/minter 2024-07-29T19:27:28,849 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2024-07-29T19:27:28,850 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2024-07-29T19:27:28,852 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2024-07-29T19:27:28,854 creating build/lib/nmdc_runtime/infrastructure 2024-07-29T19:27:28,855 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2024-07-29T19:27:28,857 creating build/lib/nmdc_runtime/domain/users 2024-07-29T19:27:28,858 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2024-07-29T19:27:28,859 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2024-07-29T19:27:28,861 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2024-07-29T19:27:28,862 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2024-07-29T19:27:28,864 creating build/lib/nmdc_runtime/site/normalization 2024-07-29T19:27:28,865 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2024-07-29T19:27:28,867 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2024-07-29T19:27:28,868 creating build/lib/nmdc_runtime/site/backup 2024-07-29T19:27:28,869 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2024-07-29T19:27:28,871 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2024-07-29T19:27:28,873 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2024-07-29T19:27:28,874 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2024-07-29T19:27:28,877 creating build/lib/nmdc_runtime/site/drsobjects 2024-07-29T19:27:28,878 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2024-07-29T19:27:28,879 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2024-07-29T19:27:28,881 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2024-07-29T19:27:28,883 creating build/lib/nmdc_runtime/site/validation 2024-07-29T19:27:28,884 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2024-07-29T19:27:28,886 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2024-07-29T19:27:28,887 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2024-07-29T19:27:28,889 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2024-07-29T19:27:28,891 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2024-07-29T19:27:28,893 creating build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,894 copying nmdc_runtime/site/translation/neon_benthic_translator.py -> build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,896 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,899 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,900 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,902 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,904 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,906 copying nmdc_runtime/site/translation/neon_surface_water_translator.py -> build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,909 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,910 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,913 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,914 copying nmdc_runtime/site/translation/neon_utils.py -> build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,916 copying nmdc_runtime/site/translation/neon_soil_translator.py -> build/lib/nmdc_runtime/site/translation 2024-07-29T19:27:28,919 creating build/lib/nmdc_runtime/site/export 2024-07-29T19:27:28,920 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2024-07-29T19:27:28,922 copying nmdc_runtime/site/export/ncbi_xml_utils.py -> build/lib/nmdc_runtime/site/export 2024-07-29T19:27:28,924 copying nmdc_runtime/site/export/ncbi_xml.py -> build/lib/nmdc_runtime/site/export 2024-07-29T19:27:28,927 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2024-07-29T19:27:28,929 creating build/lib/nmdc_runtime/site/changesheets 2024-07-29T19:27:28,929 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2024-07-29T19:27:28,931 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2024-07-29T19:27:28,933 creating build/lib/nmdc_runtime/core/exceptions 2024-07-29T19:27:28,934 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2024-07-29T19:27:28,935 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2024-07-29T19:27:28,937 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2024-07-29T19:27:28,939 creating build/lib/nmdc_runtime/core/db 2024-07-29T19:27:28,940 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2024-07-29T19:27:28,942 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2024-07-29T19:27:28,943 creating build/lib/nmdc_runtime/minter/domain 2024-07-29T19:27:28,944 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2024-07-29T19:27:28,945 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2024-07-29T19:27:28,948 creating build/lib/nmdc_runtime/minter/adapters 2024-07-29T19:27:28,949 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2024-07-29T19:27:28,950 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2024-07-29T19:27:28,953 creating build/lib/nmdc_runtime/minter/entrypoints 2024-07-29T19:27:28,954 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2024-07-29T19:27:28,955 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2024-07-29T19:27:28,957 creating build/lib/nmdc_runtime/infrastructure/database 2024-07-29T19:27:28,958 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2024-07-29T19:27:28,960 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2024-07-29T19:27:28,962 creating build/lib/nmdc_runtime/infrastructure/database/models 2024-07-29T19:27:28,963 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2024-07-29T19:27:28,964 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2024-07-29T19:27:29,014 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-07-29T19:27:29,014 !! 2024-07-29T19:27:29,016 ******************************************************************************** 2024-07-29T19:27:29,016 Please avoid running ``setup.py`` directly. 2024-07-29T19:27:29,017 Instead, use pypa/build, pypa/installer or other 2024-07-29T19:27:29,017 standards-based tools. 2024-07-29T19:27:29,019 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-07-29T19:27:29,019 ******************************************************************************** 2024-07-29T19:27:29,020 !! 2024-07-29T19:27:29,021 self.initialize_options() 2024-07-29T19:27:29,044 installing to build/bdist.linux-armv7l/wheel 2024-07-29T19:27:29,044 running install 2024-07-29T19:27:29,068 running install_lib 2024-07-29T19:27:29,098 creating build/bdist.linux-armv7l 2024-07-29T19:27:29,098 creating build/bdist.linux-armv7l/wheel 2024-07-29T19:27:29,100 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-07-29T19:27:29,101 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2024-07-29T19:27:29,102 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2024-07-29T19:27:29,104 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-07-29T19:27:29,104 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-07-29T19:27:29,106 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-07-29T19:27:29,108 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-07-29T19:27:29,109 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2024-07-29T19:27:29,111 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-07-29T19:27:29,113 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-07-29T19:27:29,113 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-07-29T19:27:29,116 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2024-07-29T19:27:29,117 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2024-07-29T19:27:29,119 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2024-07-29T19:27:29,121 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-07-29T19:27:29,122 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-07-29T19:27:29,124 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-07-29T19:27:29,126 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-07-29T19:27:29,127 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2024-07-29T19:27:29,130 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2024-07-29T19:27:29,131 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2024-07-29T19:27:29,133 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2024-07-29T19:27:29,134 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2024-07-29T19:27:29,136 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-07-29T19:27:29,137 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-07-29T19:27:29,139 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-07-29T19:27:29,141 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-07-29T19:27:29,142 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-07-29T19:27:29,144 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2024-07-29T19:27:29,146 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-07-29T19:27:29,148 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,149 copying build/lib/nmdc_runtime/site/translation/neon_benthic_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,152 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,154 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,155 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,157 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,159 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,161 copying build/lib/nmdc_runtime/site/translation/neon_surface_water_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,164 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,165 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,167 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,169 copying build/lib/nmdc_runtime/site/translation/neon_utils.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,171 copying build/lib/nmdc_runtime/site/translation/neon_soil_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2024-07-29T19:27:29,174 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2024-07-29T19:27:29,175 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2024-07-29T19:27:29,177 copying build/lib/nmdc_runtime/site/export/ncbi_xml_utils.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2024-07-29T19:27:29,179 copying build/lib/nmdc_runtime/site/export/ncbi_xml.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2024-07-29T19:27:29,182 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2024-07-29T19:27:29,183 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-07-29T19:27:29,185 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-07-29T19:27:29,188 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-07-29T19:27:29,190 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2024-07-29T19:27:29,194 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2024-07-29T19:27:29,195 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2024-07-29T19:27:29,197 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2024-07-29T19:27:29,199 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2024-07-29T19:27:29,200 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2024-07-29T19:27:29,202 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2024-07-29T19:27:29,203 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2024-07-29T19:27:29,205 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2024-07-29T19:27:29,206 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2024-07-29T19:27:29,208 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2024-07-29T19:27:29,210 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2024-07-29T19:27:29,211 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2024-07-29T19:27:29,213 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2024-07-29T19:27:29,214 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2024-07-29T19:27:29,216 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-07-29T19:27:29,218 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-07-29T19:27:29,219 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-07-29T19:27:29,221 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-07-29T19:27:29,224 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-07-29T19:27:29,227 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-07-29T19:27:29,228 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-07-29T19:27:29,230 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2024-07-29T19:27:29,232 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-07-29T19:27:29,234 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2024-07-29T19:27:29,236 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2024-07-29T19:27:29,237 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2024-07-29T19:27:29,238 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2024-07-29T19:27:29,240 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2024-07-29T19:27:29,242 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2024-07-29T19:27:29,243 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2024-07-29T19:27:29,245 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2024-07-29T19:27:29,247 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2024-07-29T19:27:29,248 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2024-07-29T19:27:29,250 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2024-07-29T19:27:29,252 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2024-07-29T19:27:29,253 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2024-07-29T19:27:29,255 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2024-07-29T19:27:29,257 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2024-07-29T19:27:29,258 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2024-07-29T19:27:29,259 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2024-07-29T19:27:29,261 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2024-07-29T19:27:29,263 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2024-07-29T19:27:29,264 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2024-07-29T19:27:29,266 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2024-07-29T19:27:29,267 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2024-07-29T19:27:29,269 running install_egg_info 2024-07-29T19:27:29,299 running egg_info 2024-07-29T19:27:29,328 writing nmdc_runtime.egg-info/PKG-INFO 2024-07-29T19:27:29,331 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2024-07-29T19:27:29,332 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2024-07-29T19:27:29,334 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2024-07-29T19:27:29,446 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-07-29T19:27:29,449 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2024-07-29T19:27:29,510 adding license file 'LICENSE' 2024-07-29T19:27:29,528 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2024-07-29T19:27:29,530 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.8.0-py3.11.egg-info 2024-07-29T19:27:29,541 running install_scripts 2024-07-29T19:27:29,554 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.8.0.dist-info/WHEEL 2024-07-29T19:27:29,556 creating '/tmp/pip-wheel-6213lvk9/nmdc_runtime-1.8.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-29T19:27:29,558 adding 'nmdc_runtime/__init__.py' 2024-07-29T19:27:29,559 adding 'nmdc_runtime/containers.py' 2024-07-29T19:27:29,561 adding 'nmdc_runtime/main.py' 2024-07-29T19:27:29,563 adding 'nmdc_runtime/util.py' 2024-07-29T19:27:29,565 adding 'nmdc_runtime/client/__init__.py' 2024-07-29T19:27:29,566 adding 'nmdc_runtime/core/__init__.py' 2024-07-29T19:27:29,568 adding 'nmdc_runtime/core/db/Database.py' 2024-07-29T19:27:29,569 adding 'nmdc_runtime/core/db/__init__.py' 2024-07-29T19:27:29,571 adding 'nmdc_runtime/core/exceptions/__init__.py' 2024-07-29T19:27:29,572 adding 'nmdc_runtime/core/exceptions/base.py' 2024-07-29T19:27:29,573 adding 'nmdc_runtime/core/exceptions/token.py' 2024-07-29T19:27:29,575 adding 'nmdc_runtime/domain/__init__.py' 2024-07-29T19:27:29,576 adding 'nmdc_runtime/domain/users/__init__.py' 2024-07-29T19:27:29,577 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2024-07-29T19:27:29,578 adding 'nmdc_runtime/domain/users/userSchema.py' 2024-07-29T19:27:29,580 adding 'nmdc_runtime/domain/users/userService.py' 2024-07-29T19:27:29,581 adding 'nmdc_runtime/infrastructure/__init__.py' 2024-07-29T19:27:29,583 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2024-07-29T19:27:29,584 adding 'nmdc_runtime/infrastructure/database/db.py' 2024-07-29T19:27:29,585 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2024-07-29T19:27:29,587 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2024-07-29T19:27:29,588 adding 'nmdc_runtime/lib/__init__.py' 2024-07-29T19:27:29,589 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2024-07-29T19:27:29,591 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2024-07-29T19:27:29,594 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2024-07-29T19:27:29,596 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2024-07-29T19:27:29,601 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2024-07-29T19:27:29,603 adding 'nmdc_runtime/minter/__init__.py' 2024-07-29T19:27:29,604 adding 'nmdc_runtime/minter/bootstrap.py' 2024-07-29T19:27:29,605 adding 'nmdc_runtime/minter/config.py' 2024-07-29T19:27:29,607 adding 'nmdc_runtime/minter/adapters/__init__.py' 2024-07-29T19:27:29,608 adding 'nmdc_runtime/minter/adapters/repository.py' 2024-07-29T19:27:29,610 adding 'nmdc_runtime/minter/domain/__init__.py' 2024-07-29T19:27:29,611 adding 'nmdc_runtime/minter/domain/model.py' 2024-07-29T19:27:29,613 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2024-07-29T19:27:29,614 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2024-07-29T19:27:29,616 adding 'nmdc_runtime/site/__init__.py' 2024-07-29T19:27:29,617 adding 'nmdc_runtime/site/graphs.py' 2024-07-29T19:27:29,622 adding 'nmdc_runtime/site/ops.py' 2024-07-29T19:27:29,625 adding 'nmdc_runtime/site/repository.py' 2024-07-29T19:27:29,627 adding 'nmdc_runtime/site/resources.py' 2024-07-29T19:27:29,628 adding 'nmdc_runtime/site/util.py' 2024-07-29T19:27:29,630 adding 'nmdc_runtime/site/backup/__init__.py' 2024-07-29T19:27:29,631 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2024-07-29T19:27:29,632 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2024-07-29T19:27:29,633 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2024-07-29T19:27:29,635 adding 'nmdc_runtime/site/changesheets/__init__.py' 2024-07-29T19:27:29,636 adding 'nmdc_runtime/site/changesheets/base.py' 2024-07-29T19:27:29,638 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2024-07-29T19:27:29,639 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2024-07-29T19:27:29,641 adding 'nmdc_runtime/site/drsobjects/registration.py' 2024-07-29T19:27:29,642 adding 'nmdc_runtime/site/export/__init__.py' 2024-07-29T19:27:29,644 adding 'nmdc_runtime/site/export/ncbi_xml.py' 2024-07-29T19:27:29,646 adding 'nmdc_runtime/site/export/ncbi_xml_utils.py' 2024-07-29T19:27:29,648 adding 'nmdc_runtime/site/export/study_metadata.py' 2024-07-29T19:27:29,649 adding 'nmdc_runtime/site/normalization/__init__.py' 2024-07-29T19:27:29,650 adding 'nmdc_runtime/site/normalization/gold.py' 2024-07-29T19:27:29,652 adding 'nmdc_runtime/site/translation/__init__.py' 2024-07-29T19:27:29,653 adding 'nmdc_runtime/site/translation/emsl.py' 2024-07-29T19:27:29,655 adding 'nmdc_runtime/site/translation/gold.py' 2024-07-29T19:27:29,657 adding 'nmdc_runtime/site/translation/gold_translator.py' 2024-07-29T19:27:29,659 adding 'nmdc_runtime/site/translation/jgi.py' 2024-07-29T19:27:29,661 adding 'nmdc_runtime/site/translation/neon_benthic_translator.py' 2024-07-29T19:27:29,665 adding 'nmdc_runtime/site/translation/neon_soil_translator.py' 2024-07-29T19:27:29,668 adding 'nmdc_runtime/site/translation/neon_surface_water_translator.py' 2024-07-29T19:27:29,670 adding 'nmdc_runtime/site/translation/neon_utils.py' 2024-07-29T19:27:29,673 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2024-07-29T19:27:29,674 adding 'nmdc_runtime/site/translation/translator.py' 2024-07-29T19:27:29,676 adding 'nmdc_runtime/site/translation/util.py' 2024-07-29T19:27:29,678 adding 'nmdc_runtime/site/validation/__init__.py' 2024-07-29T19:27:29,679 adding 'nmdc_runtime/site/validation/emsl.py' 2024-07-29T19:27:29,680 adding 'nmdc_runtime/site/validation/gold.py' 2024-07-29T19:27:29,681 adding 'nmdc_runtime/site/validation/jgi.py' 2024-07-29T19:27:29,683 adding 'nmdc_runtime/site/validation/util.py' 2024-07-29T19:27:29,685 adding 'nmdc_runtime-1.8.0.dist-info/LICENSE' 2024-07-29T19:27:29,686 adding 'nmdc_runtime-1.8.0.dist-info/METADATA' 2024-07-29T19:27:29,687 adding 'nmdc_runtime-1.8.0.dist-info/WHEEL' 2024-07-29T19:27:29,688 adding 'nmdc_runtime-1.8.0.dist-info/entry_points.txt' 2024-07-29T19:27:29,689 adding 'nmdc_runtime-1.8.0.dist-info/top_level.txt' 2024-07-29T19:27:29,691 adding 'nmdc_runtime-1.8.0.dist-info/RECORD' 2024-07-29T19:27:29,694 removing build/bdist.linux-armv7l/wheel 2024-07-29T19:27:29,839 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2024-07-29T19:27:29,843 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.8.0-py3-none-any.whl size=120990 sha256=cdf8b2de7dfcd00fc4be7a17427151b6eede167f14c5b7bc956ff2af10d6307c 2024-07-29T19:27:29,844 Stored in directory: /tmp/pip-ephem-wheel-cache-k1y8843f/wheels/5b/8e/41/a9f53831a020dfe0aa068edbbce00b7e1ccf1ab518f8f23ab3 2024-07-29T19:27:29,857 Successfully built nmdc-runtime 2024-07-29T19:27:29,864 Removed build tracker: '/tmp/pip-build-tracker-hg_bq8wo'