2024-07-31T02:37:10,967 Created temporary directory: /tmp/pip-build-tracker-j_jysg_3 2024-07-31T02:37:10,968 Initialized build tracking at /tmp/pip-build-tracker-j_jysg_3 2024-07-31T02:37:10,969 Created build tracker: /tmp/pip-build-tracker-j_jysg_3 2024-07-31T02:37:10,969 Entered build tracker: /tmp/pip-build-tracker-j_jysg_3 2024-07-31T02:37:10,970 Created temporary directory: /tmp/pip-wheel-i4rm1p28 2024-07-31T02:37:10,974 Created temporary directory: /tmp/pip-ephem-wheel-cache-5gbatfpj 2024-07-31T02:37:11,004 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-07-31T02:37:11,006 2 location(s) to search for versions of sweep: 2024-07-31T02:37:11,006 * https://pypi.org/simple/sweep/ 2024-07-31T02:37:11,006 * https://www.piwheels.org/simple/sweep/ 2024-07-31T02:37:11,007 Fetching project page and analyzing links: https://pypi.org/simple/sweep/ 2024-07-31T02:37:11,008 Getting page https://pypi.org/simple/sweep/ 2024-07-31T02:37:11,009 Found index url https://pypi.org/simple/ 2024-07-31T02:37:11,106 Fetched page https://pypi.org/simple/sweep/ as application/vnd.pypi.simple.v1+json 2024-07-31T02:37:11,111 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/bc/7d/6b80824ddc643a591371114167d879e11c4e89eebc29e3676f7d47a8d7c1/sweep-1.0.0.0-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,111 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/53/97/2962b4489c877e4a0e1869e35af855a55ebcb51edc84033c69d7f4194f8e/sweep-1.0.0.1-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,112 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/4f/c4/6305a0f518e47e0c44dbf072f22acd087659e1e8a3089a38399dfbdaa0f1/sweep-1.1.0.0-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,112 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/26/c8/314dc0810731c3863dab9781dc2b7df50a893ef3ee665d10f2a685b6bb29/sweep-1.2.0.0-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,113 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f7/c5/5134bc24236ba033f2e080cdbd7a992b60bd486db42b4f244e7081105791/sweep-1.3.0.0-py3.8.egg (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,113 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/83/71/91cdacdf8c3126c256aa94026b8404e0892344c2b4917a17478a9db438c3/sweep-2.0.0.0-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,114 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/18/74/a42582982dca2855db56241fdb2001fd124f876fda2c460f3bd879a34477/sweep-2.0.0.1-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,114 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8b/5a/100dccbabaf90f2e6cd34208c2df17137345219f39d033c9d18149d5589e/sweep-2.0.0.2-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,115 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d7/28/7efe0cfe970d4d44bc51fc8b6221a8b6bb67d14b0801f5a15e6f8534a61c/sweep-2.0.1.0-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,116 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/a2/bb/316a96f8bc95a0516bdc6364dc1c9e15c94faba23faa70f11c2613a051f6/sweep-2.0.1.1-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,116 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/b8/a7/efed8f00c71f77ec6db14ad845e7d95b24a299f60121b874d03725f02c39/sweep-2.0.1.2-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,117 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/45/b8/adcdb395dd1cf7eee371a77ef11c138a2ea9ad1146b8b4fe457f655a71ee/sweep-2.0.1.3-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,117 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/cb/f1/d8024ece1119e76cec5895025462d8a4fd1910cb4d643a8bcac152630c37/sweep-2.0.1.4-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,118 Found link https://files.pythonhosted.org/packages/8a/31/d5dc40aba3c8dd0b190d566d8b6e567f88844477143310308bec52cb2959/sweep-2.0.1.4.tar.gz (from https://pypi.org/simple/sweep/), version: 2.0.1.4 2024-07-31T02:37:11,119 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/b6/55/5319be62e41815d1cd4a39fc72946753de4307a64e6e1c316718c3de8e64/sweep-2.1.1.4-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,119 Found link https://files.pythonhosted.org/packages/f2/4b/ebb3b2141ae62ba13fa2525d3f4b4b9e3cdc5ef2fc2a71809edf8d09daca/sweep-2.1.1.4.tar.gz (from https://pypi.org/simple/sweep/), version: 2.1.1.4 2024-07-31T02:37:11,120 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/f0/f4/c760767df01e7eaa3146d1b3fb22f73d55e29c9580d746d398d7cd8da058/sweep-2.1.2.0-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-07-31T02:37:11,120 Found link https://files.pythonhosted.org/packages/3f/12/93eef73fe885af34bab3190208cf88a9f7b5d355863adc864d70c1d054d0/sweep-2.1.2.0.tar.gz (from https://pypi.org/simple/sweep/), version: 2.1.2.0 2024-07-31T02:37:11,121 Fetching project page and analyzing links: https://www.piwheels.org/simple/sweep/ 2024-07-31T02:37:11,122 Getting page https://www.piwheels.org/simple/sweep/ 2024-07-31T02:37:11,123 Found index url https://www.piwheels.org/simple/ 2024-07-31T02:37:11,158 Fetched page https://www.piwheels.org/simple/sweep/ as text/html 2024-07-31T02:37:11,160 Skipping link: No binaries permitted for sweep: https://www.piwheels.org/simple/sweep/sweep-2.1.1.4-py3-none-any.whl#sha256=321ef05a8008b3f7fe3a5a241496efcb6888dc6b4b6d251b9a5c50a4aac09f36 (from https://www.piwheels.org/simple/sweep/) 2024-07-31T02:37:11,160 Skipping link: No binaries permitted for sweep: https://www.piwheels.org/simple/sweep/sweep-2.0.1.4-py3-none-any.whl#sha256=c027ba221d79af836ce7b1f6020422b7a62efd0fb20d11c353c7f23568afe6fe (from https://www.piwheels.org/simple/sweep/) 2024-07-31T02:37:11,161 Skipping link: not a file: https://www.piwheels.org/simple/sweep/ 2024-07-31T02:37:11,161 Skipping link: not a file: https://pypi.org/simple/sweep/ 2024-07-31T02:37:11,180 Given no hashes to check 1 links for project 'sweep': discarding no candidates 2024-07-31T02:37:11,198 Collecting sweep==2.1.2.0 2024-07-31T02:37:11,201 Created temporary directory: /tmp/pip-unpack-viagwnwu 2024-07-31T02:37:11,235 Downloading sweep-2.1.2.0.tar.gz (13 kB) 2024-07-31T02:37:11,290 Added sweep==2.1.2.0 from https://files.pythonhosted.org/packages/3f/12/93eef73fe885af34bab3190208cf88a9f7b5d355863adc864d70c1d054d0/sweep-2.1.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-j_jysg_3' 2024-07-31T02:37:11,292 Running setup.py (path:/tmp/pip-wheel-i4rm1p28/sweep_9c6dae21e562446285972df169450894/setup.py) egg_info for package sweep 2024-07-31T02:37:11,293 Created temporary directory: /tmp/pip-pip-egg-info-zdrgb3ko 2024-07-31T02:37:11,293 Preparing metadata (setup.py): started 2024-07-31T02:37:11,295 Running command python setup.py egg_info 2024-07-31T02:37:12,424 running egg_info 2024-07-31T02:37:12,425 creating /tmp/pip-pip-egg-info-zdrgb3ko/sweep.egg-info 2024-07-31T02:37:12,453 writing /tmp/pip-pip-egg-info-zdrgb3ko/sweep.egg-info/PKG-INFO 2024-07-31T02:37:12,459 writing dependency_links to /tmp/pip-pip-egg-info-zdrgb3ko/sweep.egg-info/dependency_links.txt 2024-07-31T02:37:12,461 writing requirements to /tmp/pip-pip-egg-info-zdrgb3ko/sweep.egg-info/requires.txt 2024-07-31T02:37:12,462 writing top-level names to /tmp/pip-pip-egg-info-zdrgb3ko/sweep.egg-info/top_level.txt 2024-07-31T02:37:12,464 writing manifest file '/tmp/pip-pip-egg-info-zdrgb3ko/sweep.egg-info/SOURCES.txt' 2024-07-31T02:37:12,553 reading manifest file '/tmp/pip-pip-egg-info-zdrgb3ko/sweep.egg-info/SOURCES.txt' 2024-07-31T02:37:12,556 writing manifest file '/tmp/pip-pip-egg-info-zdrgb3ko/sweep.egg-info/SOURCES.txt' 2024-07-31T02:37:12,669 Preparing metadata (setup.py): finished with status 'done' 2024-07-31T02:37:12,673 Source in /tmp/pip-wheel-i4rm1p28/sweep_9c6dae21e562446285972df169450894 has version 2.1.2.0, which satisfies requirement sweep==2.1.2.0 from https://files.pythonhosted.org/packages/3f/12/93eef73fe885af34bab3190208cf88a9f7b5d355863adc864d70c1d054d0/sweep-2.1.2.0.tar.gz 2024-07-31T02:37:12,674 Removed sweep==2.1.2.0 from https://files.pythonhosted.org/packages/3f/12/93eef73fe885af34bab3190208cf88a9f7b5d355863adc864d70c1d054d0/sweep-2.1.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-j_jysg_3' 2024-07-31T02:37:12,680 Created temporary directory: /tmp/pip-unpack-jmae9080 2024-07-31T02:37:12,681 Created temporary directory: /tmp/pip-unpack-oy0ra5ur 2024-07-31T02:37:12,681 Building wheels for collected packages: sweep 2024-07-31T02:37:12,685 Created temporary directory: /tmp/pip-wheel-czlld97b 2024-07-31T02:37:12,686 Building wheel for sweep (setup.py): started 2024-07-31T02:37:12,687 Destination directory: /tmp/pip-wheel-czlld97b 2024-07-31T02:37:12,687 Running command python setup.py bdist_wheel 2024-07-31T02:37:13,756 running bdist_wheel 2024-07-31T02:37:13,899 running build 2024-07-31T02:37:13,900 running build_py 2024-07-31T02:37:13,929 creating build 2024-07-31T02:37:13,930 creating build/lib 2024-07-31T02:37:13,930 creating build/lib/sweep 2024-07-31T02:37:13,932 copying sweep/calc_proj_mat_size.py -> build/lib/sweep 2024-07-31T02:37:13,934 copying sweep/fas2sweep.py -> build/lib/sweep 2024-07-31T02:37:13,936 copying sweep/__init__.py -> build/lib/sweep 2024-07-31T02:37:13,937 copying sweep/default_proj_mat_ope.py -> build/lib/sweep 2024-07-31T02:37:13,939 copying sweep/orthbase.py -> build/lib/sweep 2024-07-31T02:37:13,941 copying sweep/is_orthonormal.py -> build/lib/sweep 2024-07-31T02:37:13,943 creating build/lib/sweep/utilities 2024-07-31T02:37:13,943 copying sweep/utilities/fasta_tools.py -> build/lib/sweep/utilities 2024-07-31T02:37:13,945 copying sweep/utilities/__init__.py -> build/lib/sweep/utilities 2024-07-31T02:37:13,947 copying sweep/utilities/tree_tools.py -> build/lib/sweep/utilities 2024-07-31T02:37:13,949 creating build/lib/sweep/sweep_support 2024-07-31T02:37:13,950 copying sweep/sweep_support/seq2list.py -> build/lib/sweep/sweep_support 2024-07-31T02:37:13,952 copying sweep/sweep_support/mask2vec_count.py -> build/lib/sweep/sweep_support 2024-07-31T02:37:13,953 copying sweep/sweep_support/mask2vec_bin.py -> build/lib/sweep/sweep_support 2024-07-31T02:37:13,955 copying sweep/sweep_support/orth.py -> build/lib/sweep/sweep_support 2024-07-31T02:37:13,957 copying sweep/sweep_support/aa2idx.py -> build/lib/sweep/sweep_support 2024-07-31T02:37:13,958 copying sweep/sweep_support/aa2int.py -> build/lib/sweep/sweep_support 2024-07-31T02:37:13,960 copying sweep/sweep_support/ij2inds.py -> build/lib/sweep/sweep_support 2024-07-31T02:37:13,961 copying sweep/sweep_support/generate_chunk.py -> build/lib/sweep/sweep_support 2024-07-31T02:37:13,963 copying sweep/sweep_support/__init__.py -> build/lib/sweep/sweep_support 2024-07-31T02:37:13,965 copying sweep/sweep_support/nt2int.py -> build/lib/sweep/sweep_support 2024-07-31T02:37:13,966 running egg_info 2024-07-31T02:37:13,993 writing sweep.egg-info/PKG-INFO 2024-07-31T02:37:13,997 writing dependency_links to sweep.egg-info/dependency_links.txt 2024-07-31T02:37:13,998 writing requirements to sweep.egg-info/requires.txt 2024-07-31T02:37:13,999 writing top-level names to sweep.egg-info/top_level.txt 2024-07-31T02:37:14,032 reading manifest file 'sweep.egg-info/SOURCES.txt' 2024-07-31T02:37:14,037 writing manifest file 'sweep.egg-info/SOURCES.txt' 2024-07-31T02:37:14,068 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-07-31T02:37:14,069 !! 2024-07-31T02:37:14,070 ******************************************************************************** 2024-07-31T02:37:14,071 Please avoid running ``setup.py`` directly. 2024-07-31T02:37:14,072 Instead, use pypa/build, pypa/installer or other 2024-07-31T02:37:14,072 standards-based tools. 2024-07-31T02:37:14,073 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-07-31T02:37:14,073 ******************************************************************************** 2024-07-31T02:37:14,074 !! 2024-07-31T02:37:14,075 self.initialize_options() 2024-07-31T02:37:14,096 installing to build/bdist.linux-armv7l/wheel 2024-07-31T02:37:14,097 running install 2024-07-31T02:37:14,121 running install_lib 2024-07-31T02:37:14,149 creating build/bdist.linux-armv7l 2024-07-31T02:37:14,149 creating build/bdist.linux-armv7l/wheel 2024-07-31T02:37:14,151 creating build/bdist.linux-armv7l/wheel/sweep 2024-07-31T02:37:14,152 creating build/bdist.linux-armv7l/wheel/sweep/utilities 2024-07-31T02:37:14,153 copying build/lib/sweep/utilities/fasta_tools.py -> build/bdist.linux-armv7l/wheel/sweep/utilities 2024-07-31T02:37:14,155 copying build/lib/sweep/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/sweep/utilities 2024-07-31T02:37:14,156 copying build/lib/sweep/utilities/tree_tools.py -> build/bdist.linux-armv7l/wheel/sweep/utilities 2024-07-31T02:37:14,158 copying build/lib/sweep/calc_proj_mat_size.py -> build/bdist.linux-armv7l/wheel/sweep 2024-07-31T02:37:14,160 copying build/lib/sweep/fas2sweep.py -> build/bdist.linux-armv7l/wheel/sweep 2024-07-31T02:37:14,162 creating build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-07-31T02:37:14,163 copying build/lib/sweep/sweep_support/seq2list.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-07-31T02:37:14,165 copying build/lib/sweep/sweep_support/mask2vec_count.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-07-31T02:37:14,167 copying build/lib/sweep/sweep_support/mask2vec_bin.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-07-31T02:37:14,168 copying build/lib/sweep/sweep_support/orth.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-07-31T02:37:14,170 copying build/lib/sweep/sweep_support/aa2idx.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-07-31T02:37:14,172 copying build/lib/sweep/sweep_support/aa2int.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-07-31T02:37:14,174 copying build/lib/sweep/sweep_support/ij2inds.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-07-31T02:37:14,175 copying build/lib/sweep/sweep_support/generate_chunk.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-07-31T02:37:14,177 copying build/lib/sweep/sweep_support/__init__.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-07-31T02:37:14,179 copying build/lib/sweep/sweep_support/nt2int.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-07-31T02:37:14,180 copying build/lib/sweep/__init__.py -> build/bdist.linux-armv7l/wheel/sweep 2024-07-31T02:37:14,182 copying build/lib/sweep/default_proj_mat_ope.py -> build/bdist.linux-armv7l/wheel/sweep 2024-07-31T02:37:14,184 copying build/lib/sweep/orthbase.py -> build/bdist.linux-armv7l/wheel/sweep 2024-07-31T02:37:14,186 copying build/lib/sweep/is_orthonormal.py -> build/bdist.linux-armv7l/wheel/sweep 2024-07-31T02:37:14,187 running install_egg_info 2024-07-31T02:37:14,220 Copying sweep.egg-info to build/bdist.linux-armv7l/wheel/sweep-2.1.2.0-py3.11.egg-info 2024-07-31T02:37:14,232 running install_scripts 2024-07-31T02:37:14,246 creating build/bdist.linux-armv7l/wheel/sweep-2.1.2.0.dist-info/WHEEL 2024-07-31T02:37:14,249 creating '/tmp/pip-wheel-czlld97b/sweep-2.1.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-07-31T02:37:14,251 adding 'sweep/__init__.py' 2024-07-31T02:37:14,252 adding 'sweep/calc_proj_mat_size.py' 2024-07-31T02:37:14,254 adding 'sweep/default_proj_mat_ope.py' 2024-07-31T02:37:14,256 adding 'sweep/fas2sweep.py' 2024-07-31T02:37:14,257 adding 'sweep/is_orthonormal.py' 2024-07-31T02:37:14,258 adding 'sweep/orthbase.py' 2024-07-31T02:37:14,260 adding 'sweep/sweep_support/__init__.py' 2024-07-31T02:37:14,261 adding 'sweep/sweep_support/aa2idx.py' 2024-07-31T02:37:14,263 adding 'sweep/sweep_support/aa2int.py' 2024-07-31T02:37:14,264 adding 'sweep/sweep_support/generate_chunk.py' 2024-07-31T02:37:14,265 adding 'sweep/sweep_support/ij2inds.py' 2024-07-31T02:37:14,266 adding 'sweep/sweep_support/mask2vec_bin.py' 2024-07-31T02:37:14,267 adding 'sweep/sweep_support/mask2vec_count.py' 2024-07-31T02:37:14,269 adding 'sweep/sweep_support/nt2int.py' 2024-07-31T02:37:14,270 adding 'sweep/sweep_support/orth.py' 2024-07-31T02:37:14,271 adding 'sweep/sweep_support/seq2list.py' 2024-07-31T02:37:14,273 adding 'sweep/utilities/__init__.py' 2024-07-31T02:37:14,274 adding 'sweep/utilities/fasta_tools.py' 2024-07-31T02:37:14,275 adding 'sweep/utilities/tree_tools.py' 2024-07-31T02:37:14,278 adding 'sweep-2.1.2.0.dist-info/METADATA' 2024-07-31T02:37:14,279 adding 'sweep-2.1.2.0.dist-info/WHEEL' 2024-07-31T02:37:14,279 adding 'sweep-2.1.2.0.dist-info/top_level.txt' 2024-07-31T02:37:14,280 adding 'sweep-2.1.2.0.dist-info/RECORD' 2024-07-31T02:37:14,282 removing build/bdist.linux-armv7l/wheel 2024-07-31T02:37:14,403 Building wheel for sweep (setup.py): finished with status 'done' 2024-07-31T02:37:14,406 Created wheel for sweep: filename=sweep-2.1.2.0-py3-none-any.whl size=15576 sha256=0c9dab4a6bd90e64e2d35b010ad07ed90e829d18d0bd255d5876dad78f72de63 2024-07-31T02:37:14,407 Stored in directory: /tmp/pip-ephem-wheel-cache-5gbatfpj/wheels/38/11/2d/b8c9723d506c8c9ad284de96ecc8d845e872579b280ef18368 2024-07-31T02:37:14,418 Successfully built sweep 2024-07-31T02:37:14,422 Removed build tracker: '/tmp/pip-build-tracker-j_jysg_3'