2024-08-01T16:26:46,311 Created temporary directory: /tmp/pip-build-tracker-jn6b6cih 2024-08-01T16:26:46,313 Initialized build tracking at /tmp/pip-build-tracker-jn6b6cih 2024-08-01T16:26:46,314 Created build tracker: /tmp/pip-build-tracker-jn6b6cih 2024-08-01T16:26:46,314 Entered build tracker: /tmp/pip-build-tracker-jn6b6cih 2024-08-01T16:26:46,315 Created temporary directory: /tmp/pip-wheel-puw5cy7d 2024-08-01T16:26:46,319 Created temporary directory: /tmp/pip-ephem-wheel-cache-8km0zwge 2024-08-01T16:26:46,347 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-08-01T16:26:46,350 2 location(s) to search for versions of phylodeep-data-bdei: 2024-08-01T16:26:46,350 * https://pypi.org/simple/phylodeep-data-bdei/ 2024-08-01T16:26:46,350 * https://www.piwheels.org/simple/phylodeep-data-bdei/ 2024-08-01T16:26:46,351 Fetching project page and analyzing links: https://pypi.org/simple/phylodeep-data-bdei/ 2024-08-01T16:26:46,352 Getting page https://pypi.org/simple/phylodeep-data-bdei/ 2024-08-01T16:26:46,353 Found index url https://pypi.org/simple/ 2024-08-01T16:26:46,450 Fetched page https://pypi.org/simple/phylodeep-data-bdei/ as application/vnd.pypi.simple.v1+json 2024-08-01T16:26:46,451 Skipping link: No binaries permitted for phylodeep-data-bdei: https://files.pythonhosted.org/packages/78/0f/abe0ffdf55823eb93a2cd81e32e3e5005c51cf8dad15121b396f907d55e8/phylodeep_data_bdei-0.4-py3-none-any.whl (from https://pypi.org/simple/phylodeep-data-bdei/) (requires-python:>=3.8) 2024-08-01T16:26:46,452 Found link https://files.pythonhosted.org/packages/b8/2c/589d2cf7036f570a4fc4852ee9cc23f35677159f0f74b29db4f090a3e5c8/phylodeep_data_bdei-0.4.tar.gz (from https://pypi.org/simple/phylodeep-data-bdei/) (requires-python:>=3.8), version: 0.4 2024-08-01T16:26:46,453 Fetching project page and analyzing links: https://www.piwheels.org/simple/phylodeep-data-bdei/ 2024-08-01T16:26:46,454 Getting page https://www.piwheels.org/simple/phylodeep-data-bdei/ 2024-08-01T16:26:46,455 Found index url https://www.piwheels.org/simple/ 2024-08-01T16:26:46,501 Fetched page https://www.piwheels.org/simple/phylodeep-data-bdei/ as text/html 2024-08-01T16:26:46,502 Skipping link: not a file: https://www.piwheels.org/simple/phylodeep-data-bdei/ 2024-08-01T16:26:46,503 Skipping link: not a file: https://pypi.org/simple/phylodeep-data-bdei/ 2024-08-01T16:26:46,522 Given no hashes to check 1 links for project 'phylodeep-data-bdei': discarding no candidates 2024-08-01T16:26:46,540 Collecting phylodeep-data-bdei==0.4 2024-08-01T16:26:46,543 Created temporary directory: /tmp/pip-unpack-5s_rz69g 2024-08-01T16:26:46,646 Downloading phylodeep_data_bdei-0.4.tar.gz (69.9 MB) 2024-08-01T16:26:58,651 Added phylodeep-data-bdei==0.4 from https://files.pythonhosted.org/packages/b8/2c/589d2cf7036f570a4fc4852ee9cc23f35677159f0f74b29db4f090a3e5c8/phylodeep_data_bdei-0.4.tar.gz to build tracker '/tmp/pip-build-tracker-jn6b6cih' 2024-08-01T16:26:58,653 Running setup.py (path:/tmp/pip-wheel-puw5cy7d/phylodeep-data-bdei_ebd764c190b8463eb9c1458b6e8c60a8/setup.py) egg_info for package phylodeep-data-bdei 2024-08-01T16:26:58,654 Created temporary directory: /tmp/pip-pip-egg-info-8bnxkxik 2024-08-01T16:26:58,654 Preparing metadata (setup.py): started 2024-08-01T16:26:58,656 Running command python setup.py egg_info 2024-08-01T16:26:59,789 running egg_info 2024-08-01T16:26:59,790 creating /tmp/pip-pip-egg-info-8bnxkxik/phylodeep_data_bdei.egg-info 2024-08-01T16:26:59,817 writing /tmp/pip-pip-egg-info-8bnxkxik/phylodeep_data_bdei.egg-info/PKG-INFO 2024-08-01T16:26:59,820 writing dependency_links to /tmp/pip-pip-egg-info-8bnxkxik/phylodeep_data_bdei.egg-info/dependency_links.txt 2024-08-01T16:26:59,821 writing entry points to /tmp/pip-pip-egg-info-8bnxkxik/phylodeep_data_bdei.egg-info/entry_points.txt 2024-08-01T16:26:59,822 writing requirements to /tmp/pip-pip-egg-info-8bnxkxik/phylodeep_data_bdei.egg-info/requires.txt 2024-08-01T16:26:59,824 writing top-level names to /tmp/pip-pip-egg-info-8bnxkxik/phylodeep_data_bdei.egg-info/top_level.txt 2024-08-01T16:26:59,825 writing manifest file '/tmp/pip-pip-egg-info-8bnxkxik/phylodeep_data_bdei.egg-info/SOURCES.txt' 2024-08-01T16:26:59,910 reading manifest file '/tmp/pip-pip-egg-info-8bnxkxik/phylodeep_data_bdei.egg-info/SOURCES.txt' 2024-08-01T16:26:59,911 adding license file 'LICENSE' 2024-08-01T16:26:59,913 writing manifest file '/tmp/pip-pip-egg-info-8bnxkxik/phylodeep_data_bdei.egg-info/SOURCES.txt' 2024-08-01T16:27:00,025 Preparing metadata (setup.py): finished with status 'done' 2024-08-01T16:27:00,028 Source in /tmp/pip-wheel-puw5cy7d/phylodeep-data-bdei_ebd764c190b8463eb9c1458b6e8c60a8 has version 0.4, which satisfies requirement phylodeep-data-bdei==0.4 from https://files.pythonhosted.org/packages/b8/2c/589d2cf7036f570a4fc4852ee9cc23f35677159f0f74b29db4f090a3e5c8/phylodeep_data_bdei-0.4.tar.gz 2024-08-01T16:27:00,029 Removed phylodeep-data-bdei==0.4 from https://files.pythonhosted.org/packages/b8/2c/589d2cf7036f570a4fc4852ee9cc23f35677159f0f74b29db4f090a3e5c8/phylodeep_data_bdei-0.4.tar.gz from build tracker '/tmp/pip-build-tracker-jn6b6cih' 2024-08-01T16:27:00,035 Created temporary directory: /tmp/pip-unpack-ifczdtul 2024-08-01T16:27:00,036 Created temporary directory: /tmp/pip-unpack-lsb7_c6p 2024-08-01T16:27:00,036 Building wheels for collected packages: phylodeep-data-bdei 2024-08-01T16:27:00,040 Created temporary directory: /tmp/pip-wheel-19el2j4a 2024-08-01T16:27:00,041 Building wheel for phylodeep-data-bdei (setup.py): started 2024-08-01T16:27:00,042 Destination directory: /tmp/pip-wheel-19el2j4a 2024-08-01T16:27:00,042 Running command python setup.py bdist_wheel 2024-08-01T16:27:01,098 running bdist_wheel 2024-08-01T16:27:01,243 running build 2024-08-01T16:27:01,243 running build_py 2024-08-01T16:27:01,273 creating build 2024-08-01T16:27:01,274 creating build/lib 2024-08-01T16:27:01,274 creating build/lib/phylodeep_data_bdei 2024-08-01T16:27:01,276 copying phylodeep_data_bdei/__init__.py -> build/lib/phylodeep_data_bdei 2024-08-01T16:27:01,277 running egg_info 2024-08-01T16:27:01,305 writing phylodeep_data_bdei.egg-info/PKG-INFO 2024-08-01T16:27:01,308 writing dependency_links to phylodeep_data_bdei.egg-info/dependency_links.txt 2024-08-01T16:27:01,310 writing entry points to phylodeep_data_bdei.egg-info/entry_points.txt 2024-08-01T16:27:01,311 writing requirements to phylodeep_data_bdei.egg-info/requires.txt 2024-08-01T16:27:01,312 writing top-level names to phylodeep_data_bdei.egg-info/top_level.txt 2024-08-01T16:27:01,343 reading manifest file 'phylodeep_data_bdei.egg-info/SOURCES.txt' 2024-08-01T16:27:01,345 adding license file 'LICENSE' 2024-08-01T16:27:01,348 writing manifest file 'phylodeep_data_bdei.egg-info/SOURCES.txt' 2024-08-01T16:27:01,350 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'phylodeep_data_bdei.large' is absent from the `packages` configuration. 2024-08-01T16:27:01,350 !! 2024-08-01T16:27:01,352 ******************************************************************************** 2024-08-01T16:27:01,352 ############################ 2024-08-01T16:27:01,353 # Package would be ignored # 2024-08-01T16:27:01,353 ############################ 2024-08-01T16:27:01,354 Python recognizes 'phylodeep_data_bdei.large' as an importable package[^1], 2024-08-01T16:27:01,354 but it is absent from setuptools' `packages` configuration. 2024-08-01T16:27:01,355 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-01T16:27:01,356 package, please make sure that 'phylodeep_data_bdei.large' is explicitly added 2024-08-01T16:27:01,357 to the `packages` configuration field. 2024-08-01T16:27:01,358 Alternatively, you can also rely on setuptools' discovery methods 2024-08-01T16:27:01,358 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-01T16:27:01,359 instead of `find_packages(...)`/`find:`). 2024-08-01T16:27:01,360 You can read more about "package discovery" on setuptools documentation page: 2024-08-01T16:27:01,362 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-01T16:27:01,362 If you don't want 'phylodeep_data_bdei.large' to be distributed and are 2024-08-01T16:27:01,363 already explicitly excluding 'phylodeep_data_bdei.large' via 2024-08-01T16:27:01,363 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-01T16:27:01,364 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-01T16:27:01,364 combination with a more fine grained `package-data` configuration. 2024-08-01T16:27:01,365 You can read more about "package data files" on setuptools documentation page: 2024-08-01T16:27:01,366 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-01T16:27:01,368 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-01T16:27:01,368 even if it does not contain any `.py` files. 2024-08-01T16:27:01,369 On the other hand, currently there is no concept of package data 2024-08-01T16:27:01,369 directory, all directories are treated like packages. 2024-08-01T16:27:01,370 ******************************************************************************** 2024-08-01T16:27:01,370 !! 2024-08-01T16:27:01,371 check.warn(importable) 2024-08-01T16:27:01,371 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'phylodeep_data_bdei.small' is absent from the `packages` configuration. 2024-08-01T16:27:01,372 !! 2024-08-01T16:27:01,373 ******************************************************************************** 2024-08-01T16:27:01,373 ############################ 2024-08-01T16:27:01,374 # Package would be ignored # 2024-08-01T16:27:01,374 ############################ 2024-08-01T16:27:01,375 Python recognizes 'phylodeep_data_bdei.small' as an importable package[^1], 2024-08-01T16:27:01,376 but it is absent from setuptools' `packages` configuration. 2024-08-01T16:27:01,377 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-01T16:27:01,377 package, please make sure that 'phylodeep_data_bdei.small' is explicitly added 2024-08-01T16:27:01,378 to the `packages` configuration field. 2024-08-01T16:27:01,379 Alternatively, you can also rely on setuptools' discovery methods 2024-08-01T16:27:01,380 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-01T16:27:01,381 instead of `find_packages(...)`/`find:`). 2024-08-01T16:27:01,382 You can read more about "package discovery" on setuptools documentation page: 2024-08-01T16:27:01,383 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-01T16:27:01,384 If you don't want 'phylodeep_data_bdei.small' to be distributed and are 2024-08-01T16:27:01,385 already explicitly excluding 'phylodeep_data_bdei.small' via 2024-08-01T16:27:01,385 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-01T16:27:01,386 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-01T16:27:01,386 combination with a more fine grained `package-data` configuration. 2024-08-01T16:27:01,388 You can read more about "package data files" on setuptools documentation page: 2024-08-01T16:27:01,389 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-01T16:27:01,391 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-01T16:27:01,391 even if it does not contain any `.py` files. 2024-08-01T16:27:01,392 On the other hand, currently there is no concept of package data 2024-08-01T16:27:01,393 directory, all directories are treated like packages. 2024-08-01T16:27:01,394 ******************************************************************************** 2024-08-01T16:27:01,394 !! 2024-08-01T16:27:01,395 check.warn(importable) 2024-08-01T16:27:01,395 copying phylodeep_data_bdei/../README.md -> build/lib/phylodeep_data_bdei/.. 2024-08-01T16:27:01,396 creating build/lib/phylodeep_data_bdei/large 2024-08-01T16:27:01,396 copying phylodeep_data_bdei/large/CNN_FULL_TREE.csv.xz -> build/lib/phylodeep_data_bdei/large 2024-08-01T16:27:01,515 copying phylodeep_data_bdei/large/FFNN_SUMSTATS.csv.xz -> build/lib/phylodeep_data_bdei/large 2024-08-01T16:27:01,674 copying phylodeep_data_bdei/large/target.csv.xz -> build/lib/phylodeep_data_bdei/large 2024-08-01T16:27:01,884 creating build/lib/phylodeep_data_bdei/small 2024-08-01T16:27:01,885 copying phylodeep_data_bdei/small/CNN_FULL_TREE.csv.xz -> build/lib/phylodeep_data_bdei/small 2024-08-01T16:27:02,050 copying phylodeep_data_bdei/small/FFNN_SUMSTATS.csv.xz -> build/lib/phylodeep_data_bdei/small 2024-08-01T16:27:02,221 copying phylodeep_data_bdei/small/target.csv.xz -> build/lib/phylodeep_data_bdei/small 2024-08-01T16:27:02,469 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-08-01T16:27:02,470 !! 2024-08-01T16:27:02,471 ******************************************************************************** 2024-08-01T16:27:02,471 Please avoid running ``setup.py`` directly. 2024-08-01T16:27:02,472 Instead, use pypa/build, pypa/installer or other 2024-08-01T16:27:02,473 standards-based tools. 2024-08-01T16:27:02,474 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-08-01T16:27:02,474 ******************************************************************************** 2024-08-01T16:27:02,475 !! 2024-08-01T16:27:02,476 self.initialize_options() 2024-08-01T16:27:02,498 installing to build/bdist.linux-armv7l/wheel 2024-08-01T16:27:02,499 running install 2024-08-01T16:27:02,524 running install_lib 2024-08-01T16:27:02,551 creating build/bdist.linux-armv7l 2024-08-01T16:27:02,551 creating build/bdist.linux-armv7l/wheel 2024-08-01T16:27:02,553 creating build/bdist.linux-armv7l/wheel/phylodeep_data_bdei 2024-08-01T16:27:02,554 creating build/bdist.linux-armv7l/wheel/phylodeep_data_bdei/large 2024-08-01T16:27:02,555 copying build/lib/phylodeep_data_bdei/large/target.csv.xz -> build/bdist.linux-armv7l/wheel/phylodeep_data_bdei/large 2024-08-01T16:27:02,806 copying build/lib/phylodeep_data_bdei/large/CNN_FULL_TREE.csv.xz -> build/bdist.linux-armv7l/wheel/phylodeep_data_bdei/large 2024-08-01T16:27:02,952 copying build/lib/phylodeep_data_bdei/large/FFNN_SUMSTATS.csv.xz -> build/bdist.linux-armv7l/wheel/phylodeep_data_bdei/large 2024-08-01T16:27:03,095 creating build/bdist.linux-armv7l/wheel/phylodeep_data_bdei/small 2024-08-01T16:27:03,096 copying build/lib/phylodeep_data_bdei/small/target.csv.xz -> build/bdist.linux-armv7l/wheel/phylodeep_data_bdei/small 2024-08-01T16:27:03,316 copying build/lib/phylodeep_data_bdei/small/CNN_FULL_TREE.csv.xz -> build/bdist.linux-armv7l/wheel/phylodeep_data_bdei/small 2024-08-01T16:27:03,469 copying build/lib/phylodeep_data_bdei/small/FFNN_SUMSTATS.csv.xz -> build/bdist.linux-armv7l/wheel/phylodeep_data_bdei/small 2024-08-01T16:27:03,617 copying build/lib/phylodeep_data_bdei/__init__.py -> build/bdist.linux-armv7l/wheel/phylodeep_data_bdei 2024-08-01T16:27:03,620 copying build/lib/README.md -> build/bdist.linux-armv7l/wheel 2024-08-01T16:27:03,621 running install_egg_info 2024-08-01T16:27:03,654 Copying phylodeep_data_bdei.egg-info to build/bdist.linux-armv7l/wheel/phylodeep_data_bdei-0.4-py3.11.egg-info 2024-08-01T16:27:03,665 running install_scripts 2024-08-01T16:27:03,680 creating build/bdist.linux-armv7l/wheel/phylodeep_data_bdei-0.4.dist-info/WHEEL 2024-08-01T16:27:03,683 creating '/tmp/pip-wheel-19el2j4a/phylodeep_data_bdei-0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-08-01T16:27:03,684 adding 'README.md' 2024-08-01T16:27:03,686 adding 'phylodeep_data_bdei/__init__.py' 2024-08-01T16:27:04,798 adding 'phylodeep_data_bdei/large/CNN_FULL_TREE.csv.xz' 2024-08-01T16:27:05,970 adding 'phylodeep_data_bdei/large/FFNN_SUMSTATS.csv.xz' 2024-08-01T16:27:07,574 adding 'phylodeep_data_bdei/large/target.csv.xz' 2024-08-01T16:27:08,766 adding 'phylodeep_data_bdei/small/CNN_FULL_TREE.csv.xz' 2024-08-01T16:27:09,954 adding 'phylodeep_data_bdei/small/FFNN_SUMSTATS.csv.xz' 2024-08-01T16:27:11,681 adding 'phylodeep_data_bdei/small/target.csv.xz' 2024-08-01T16:27:11,926 adding 'phylodeep_data_bdei-0.4.dist-info/LICENSE' 2024-08-01T16:27:11,928 adding 'phylodeep_data_bdei-0.4.dist-info/METADATA' 2024-08-01T16:27:11,929 adding 'phylodeep_data_bdei-0.4.dist-info/WHEEL' 2024-08-01T16:27:11,930 adding 'phylodeep_data_bdei-0.4.dist-info/entry_points.txt' 2024-08-01T16:27:11,931 adding 'phylodeep_data_bdei-0.4.dist-info/top_level.txt' 2024-08-01T16:27:11,932 adding 'phylodeep_data_bdei-0.4.dist-info/RECORD' 2024-08-01T16:27:12,258 removing build/bdist.linux-armv7l/wheel 2024-08-01T16:27:12,402 Building wheel for phylodeep-data-bdei (setup.py): finished with status 'done' 2024-08-01T16:27:13,087 Created wheel for phylodeep-data-bdei: filename=phylodeep_data_bdei-0.4-py3-none-any.whl size=69872615 sha256=4cb52ddea466446541e26f1a41575d0e9c394171a3f9bebf187869c56d9dfc5d 2024-08-01T16:27:13,088 Stored in directory: /tmp/pip-ephem-wheel-cache-8km0zwge/wheels/36/50/83/ad9583453513b125fe5f9a3c85d8b68ea586b3aa69c9f2210c 2024-08-01T16:27:13,120 Successfully built phylodeep-data-bdei 2024-08-01T16:27:15,173 Removed build tracker: '/tmp/pip-build-tracker-jn6b6cih'