2024-08-03T02:13:11,160 Created temporary directory: /tmp/pip-build-tracker-ry9as9sc 2024-08-03T02:13:11,161 Initialized build tracking at /tmp/pip-build-tracker-ry9as9sc 2024-08-03T02:13:11,162 Created build tracker: /tmp/pip-build-tracker-ry9as9sc 2024-08-03T02:13:11,162 Entered build tracker: /tmp/pip-build-tracker-ry9as9sc 2024-08-03T02:13:11,163 Created temporary directory: /tmp/pip-wheel-1g2wlfy8 2024-08-03T02:13:11,167 Created temporary directory: /tmp/pip-ephem-wheel-cache-jrvfhl3j 2024-08-03T02:13:11,195 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-08-03T02:13:11,198 2 location(s) to search for versions of sweep: 2024-08-03T02:13:11,198 * https://pypi.org/simple/sweep/ 2024-08-03T02:13:11,198 * https://www.piwheels.org/simple/sweep/ 2024-08-03T02:13:11,198 Fetching project page and analyzing links: https://pypi.org/simple/sweep/ 2024-08-03T02:13:11,199 Getting page https://pypi.org/simple/sweep/ 2024-08-03T02:13:11,201 Found index url https://pypi.org/simple/ 2024-08-03T02:13:11,295 Fetched page https://pypi.org/simple/sweep/ as application/vnd.pypi.simple.v1+json 2024-08-03T02:13:11,300 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/bc/7d/6b80824ddc643a591371114167d879e11c4e89eebc29e3676f7d47a8d7c1/sweep-1.0.0.0-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,301 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/53/97/2962b4489c877e4a0e1869e35af855a55ebcb51edc84033c69d7f4194f8e/sweep-1.0.0.1-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,302 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/4f/c4/6305a0f518e47e0c44dbf072f22acd087659e1e8a3089a38399dfbdaa0f1/sweep-1.1.0.0-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,302 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/26/c8/314dc0810731c3863dab9781dc2b7df50a893ef3ee665d10f2a685b6bb29/sweep-1.2.0.0-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,303 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/f7/c5/5134bc24236ba033f2e080cdbd7a992b60bd486db42b4f244e7081105791/sweep-1.3.0.0-py3.8.egg (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,303 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/83/71/91cdacdf8c3126c256aa94026b8404e0892344c2b4917a17478a9db438c3/sweep-2.0.0.0-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,304 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/18/74/a42582982dca2855db56241fdb2001fd124f876fda2c460f3bd879a34477/sweep-2.0.0.1-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,304 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8b/5a/100dccbabaf90f2e6cd34208c2df17137345219f39d033c9d18149d5589e/sweep-2.0.0.2-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,305 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d7/28/7efe0cfe970d4d44bc51fc8b6221a8b6bb67d14b0801f5a15e6f8534a61c/sweep-2.0.1.0-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,306 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/a2/bb/316a96f8bc95a0516bdc6364dc1c9e15c94faba23faa70f11c2613a051f6/sweep-2.0.1.1-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,306 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/b8/a7/efed8f00c71f77ec6db14ad845e7d95b24a299f60121b874d03725f02c39/sweep-2.0.1.2-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,307 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/45/b8/adcdb395dd1cf7eee371a77ef11c138a2ea9ad1146b8b4fe457f655a71ee/sweep-2.0.1.3-py3.10.egg (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,307 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/cb/f1/d8024ece1119e76cec5895025462d8a4fd1910cb4d643a8bcac152630c37/sweep-2.0.1.4-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,308 Found link https://files.pythonhosted.org/packages/8a/31/d5dc40aba3c8dd0b190d566d8b6e567f88844477143310308bec52cb2959/sweep-2.0.1.4.tar.gz (from https://pypi.org/simple/sweep/), version: 2.0.1.4 2024-08-03T02:13:11,309 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/b6/55/5319be62e41815d1cd4a39fc72946753de4307a64e6e1c316718c3de8e64/sweep-2.1.1.4-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,310 Found link https://files.pythonhosted.org/packages/f2/4b/ebb3b2141ae62ba13fa2525d3f4b4b9e3cdc5ef2fc2a71809edf8d09daca/sweep-2.1.1.4.tar.gz (from https://pypi.org/simple/sweep/), version: 2.1.1.4 2024-08-03T02:13:11,310 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/f0/f4/c760767df01e7eaa3146d1b3fb22f73d55e29c9580d746d398d7cd8da058/sweep-2.1.2.0-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,311 Found link https://files.pythonhosted.org/packages/3f/12/93eef73fe885af34bab3190208cf88a9f7b5d355863adc864d70c1d054d0/sweep-2.1.2.0.tar.gz (from https://pypi.org/simple/sweep/), version: 2.1.2.0 2024-08-03T02:13:11,311 Skipping link: No binaries permitted for sweep: https://files.pythonhosted.org/packages/33/19/24b6903a0df1ca5e4a4b02fc7e67174b0dd0cdc1a74ed44f523356d89b17/sweep-2.1.3.0-py3-none-any.whl (from https://pypi.org/simple/sweep/) 2024-08-03T02:13:11,312 Found link https://files.pythonhosted.org/packages/79/10/fe2440b9c9ea98cd6f2180ee565d0c23d39eb5732b57cf5b468e4ad3c683/sweep-2.1.3.0.tar.gz (from https://pypi.org/simple/sweep/), version: 2.1.3.0 2024-08-03T02:13:11,312 Fetching project page and analyzing links: https://www.piwheels.org/simple/sweep/ 2024-08-03T02:13:11,313 Getting page https://www.piwheels.org/simple/sweep/ 2024-08-03T02:13:11,314 Found index url https://www.piwheels.org/simple/ 2024-08-03T02:13:11,351 Fetched page https://www.piwheels.org/simple/sweep/ as text/html 2024-08-03T02:13:11,354 Skipping link: No binaries permitted for sweep: https://www.piwheels.org/simple/sweep/sweep-2.1.2.0-py3-none-any.whl#sha256=0c9dab4a6bd90e64e2d35b010ad07ed90e829d18d0bd255d5876dad78f72de63 (from https://www.piwheels.org/simple/sweep/) 2024-08-03T02:13:11,354 Skipping link: No binaries permitted for sweep: https://www.piwheels.org/simple/sweep/sweep-2.1.1.4-py3-none-any.whl#sha256=321ef05a8008b3f7fe3a5a241496efcb6888dc6b4b6d251b9a5c50a4aac09f36 (from https://www.piwheels.org/simple/sweep/) 2024-08-03T02:13:11,355 Skipping link: No binaries permitted for sweep: https://www.piwheels.org/simple/sweep/sweep-2.0.1.4-py3-none-any.whl#sha256=c027ba221d79af836ce7b1f6020422b7a62efd0fb20d11c353c7f23568afe6fe (from https://www.piwheels.org/simple/sweep/) 2024-08-03T02:13:11,356 Skipping link: not a file: https://www.piwheels.org/simple/sweep/ 2024-08-03T02:13:11,356 Skipping link: not a file: https://pypi.org/simple/sweep/ 2024-08-03T02:13:11,377 Given no hashes to check 1 links for project 'sweep': discarding no candidates 2024-08-03T02:13:11,396 Collecting sweep==2.1.3.0 2024-08-03T02:13:11,399 Created temporary directory: /tmp/pip-unpack-29yxze1i 2024-08-03T02:13:11,492 Downloading sweep-2.1.3.0.tar.gz (13 kB) 2024-08-03T02:13:11,573 Added sweep==2.1.3.0 from https://files.pythonhosted.org/packages/79/10/fe2440b9c9ea98cd6f2180ee565d0c23d39eb5732b57cf5b468e4ad3c683/sweep-2.1.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-ry9as9sc' 2024-08-03T02:13:11,576 Running setup.py (path:/tmp/pip-wheel-1g2wlfy8/sweep_732c26dc0b0749c7a137c77c59c311df/setup.py) egg_info for package sweep 2024-08-03T02:13:11,577 Created temporary directory: /tmp/pip-pip-egg-info-9qh9g9ph 2024-08-03T02:13:11,578 Preparing metadata (setup.py): started 2024-08-03T02:13:11,580 Running command python setup.py egg_info 2024-08-03T02:13:12,765 running egg_info 2024-08-03T02:13:12,767 creating /tmp/pip-pip-egg-info-9qh9g9ph/sweep.egg-info 2024-08-03T02:13:12,795 writing /tmp/pip-pip-egg-info-9qh9g9ph/sweep.egg-info/PKG-INFO 2024-08-03T02:13:12,799 writing dependency_links to /tmp/pip-pip-egg-info-9qh9g9ph/sweep.egg-info/dependency_links.txt 2024-08-03T02:13:12,801 writing requirements to /tmp/pip-pip-egg-info-9qh9g9ph/sweep.egg-info/requires.txt 2024-08-03T02:13:12,802 writing top-level names to /tmp/pip-pip-egg-info-9qh9g9ph/sweep.egg-info/top_level.txt 2024-08-03T02:13:12,803 writing manifest file '/tmp/pip-pip-egg-info-9qh9g9ph/sweep.egg-info/SOURCES.txt' 2024-08-03T02:13:12,894 reading manifest file '/tmp/pip-pip-egg-info-9qh9g9ph/sweep.egg-info/SOURCES.txt' 2024-08-03T02:13:12,898 writing manifest file '/tmp/pip-pip-egg-info-9qh9g9ph/sweep.egg-info/SOURCES.txt' 2024-08-03T02:13:13,010 Preparing metadata (setup.py): finished with status 'done' 2024-08-03T02:13:13,015 Source in /tmp/pip-wheel-1g2wlfy8/sweep_732c26dc0b0749c7a137c77c59c311df has version 2.1.3.0, which satisfies requirement sweep==2.1.3.0 from https://files.pythonhosted.org/packages/79/10/fe2440b9c9ea98cd6f2180ee565d0c23d39eb5732b57cf5b468e4ad3c683/sweep-2.1.3.0.tar.gz 2024-08-03T02:13:13,016 Removed sweep==2.1.3.0 from https://files.pythonhosted.org/packages/79/10/fe2440b9c9ea98cd6f2180ee565d0c23d39eb5732b57cf5b468e4ad3c683/sweep-2.1.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-ry9as9sc' 2024-08-03T02:13:13,022 Created temporary directory: /tmp/pip-unpack-f0ucr9b0 2024-08-03T02:13:13,023 Created temporary directory: /tmp/pip-unpack-db_pig6k 2024-08-03T02:13:13,024 Building wheels for collected packages: sweep 2024-08-03T02:13:13,028 Created temporary directory: /tmp/pip-wheel-jbfvxeda 2024-08-03T02:13:13,028 Building wheel for sweep (setup.py): started 2024-08-03T02:13:13,030 Destination directory: /tmp/pip-wheel-jbfvxeda 2024-08-03T02:13:13,030 Running command python setup.py bdist_wheel 2024-08-03T02:13:14,103 running bdist_wheel 2024-08-03T02:13:14,244 running build 2024-08-03T02:13:14,245 running build_py 2024-08-03T02:13:14,274 creating build 2024-08-03T02:13:14,275 creating build/lib 2024-08-03T02:13:14,276 creating build/lib/sweep 2024-08-03T02:13:14,277 copying sweep/orthbase.py -> build/lib/sweep 2024-08-03T02:13:14,280 copying sweep/default_proj_mat_ope.py -> build/lib/sweep 2024-08-03T02:13:14,282 copying sweep/calc_proj_mat_size.py -> build/lib/sweep 2024-08-03T02:13:14,284 copying sweep/fas2sweep.py -> build/lib/sweep 2024-08-03T02:13:14,286 copying sweep/__init__.py -> build/lib/sweep 2024-08-03T02:13:14,288 copying sweep/is_orthonormal.py -> build/lib/sweep 2024-08-03T02:13:14,290 creating build/lib/sweep/utilities 2024-08-03T02:13:14,291 copying sweep/utilities/tree_tools.py -> build/lib/sweep/utilities 2024-08-03T02:13:14,293 copying sweep/utilities/fasta_tools.py -> build/lib/sweep/utilities 2024-08-03T02:13:14,295 copying sweep/utilities/__init__.py -> build/lib/sweep/utilities 2024-08-03T02:13:14,298 creating build/lib/sweep/sweep_support 2024-08-03T02:13:14,299 copying sweep/sweep_support/mask2vec_bin.py -> build/lib/sweep/sweep_support 2024-08-03T02:13:14,301 copying sweep/sweep_support/aa2int.py -> build/lib/sweep/sweep_support 2024-08-03T02:13:14,303 copying sweep/sweep_support/ij2inds.py -> build/lib/sweep/sweep_support 2024-08-03T02:13:14,304 copying sweep/sweep_support/mask2vec_count.py -> build/lib/sweep/sweep_support 2024-08-03T02:13:14,306 copying sweep/sweep_support/orth.py -> build/lib/sweep/sweep_support 2024-08-03T02:13:14,308 copying sweep/sweep_support/aa2idx.py -> build/lib/sweep/sweep_support 2024-08-03T02:13:14,310 copying sweep/sweep_support/seq2list.py -> build/lib/sweep/sweep_support 2024-08-03T02:13:14,312 copying sweep/sweep_support/generate_chunk.py -> build/lib/sweep/sweep_support 2024-08-03T02:13:14,313 copying sweep/sweep_support/nt2int.py -> build/lib/sweep/sweep_support 2024-08-03T02:13:14,315 copying sweep/sweep_support/__init__.py -> build/lib/sweep/sweep_support 2024-08-03T02:13:14,317 running egg_info 2024-08-03T02:13:14,344 writing sweep.egg-info/PKG-INFO 2024-08-03T02:13:14,347 writing dependency_links to sweep.egg-info/dependency_links.txt 2024-08-03T02:13:14,349 writing requirements to sweep.egg-info/requires.txt 2024-08-03T02:13:14,350 writing top-level names to sweep.egg-info/top_level.txt 2024-08-03T02:13:14,383 reading manifest file 'sweep.egg-info/SOURCES.txt' 2024-08-03T02:13:14,388 writing manifest file 'sweep.egg-info/SOURCES.txt' 2024-08-03T02:13:14,420 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-08-03T02:13:14,421 !! 2024-08-03T02:13:14,422 ******************************************************************************** 2024-08-03T02:13:14,422 Please avoid running ``setup.py`` directly. 2024-08-03T02:13:14,423 Instead, use pypa/build, pypa/installer or other 2024-08-03T02:13:14,423 standards-based tools. 2024-08-03T02:13:14,424 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-08-03T02:13:14,425 ******************************************************************************** 2024-08-03T02:13:14,426 !! 2024-08-03T02:13:14,426 self.initialize_options() 2024-08-03T02:13:14,450 installing to build/bdist.linux-armv7l/wheel 2024-08-03T02:13:14,451 running install 2024-08-03T02:13:14,475 running install_lib 2024-08-03T02:13:14,503 creating build/bdist.linux-armv7l 2024-08-03T02:13:14,503 creating build/bdist.linux-armv7l/wheel 2024-08-03T02:13:14,505 creating build/bdist.linux-armv7l/wheel/sweep 2024-08-03T02:13:14,506 copying build/lib/sweep/orthbase.py -> build/bdist.linux-armv7l/wheel/sweep 2024-08-03T02:13:14,508 copying build/lib/sweep/default_proj_mat_ope.py -> build/bdist.linux-armv7l/wheel/sweep 2024-08-03T02:13:14,510 copying build/lib/sweep/calc_proj_mat_size.py -> build/bdist.linux-armv7l/wheel/sweep 2024-08-03T02:13:14,512 copying build/lib/sweep/fas2sweep.py -> build/bdist.linux-armv7l/wheel/sweep 2024-08-03T02:13:14,515 creating build/bdist.linux-armv7l/wheel/sweep/utilities 2024-08-03T02:13:14,516 copying build/lib/sweep/utilities/tree_tools.py -> build/bdist.linux-armv7l/wheel/sweep/utilities 2024-08-03T02:13:14,518 copying build/lib/sweep/utilities/fasta_tools.py -> build/bdist.linux-armv7l/wheel/sweep/utilities 2024-08-03T02:13:14,520 copying build/lib/sweep/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/sweep/utilities 2024-08-03T02:13:14,522 creating build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-08-03T02:13:14,523 copying build/lib/sweep/sweep_support/mask2vec_bin.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-08-03T02:13:14,525 copying build/lib/sweep/sweep_support/aa2int.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-08-03T02:13:14,527 copying build/lib/sweep/sweep_support/ij2inds.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-08-03T02:13:14,529 copying build/lib/sweep/sweep_support/mask2vec_count.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-08-03T02:13:14,531 copying build/lib/sweep/sweep_support/orth.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-08-03T02:13:14,533 copying build/lib/sweep/sweep_support/aa2idx.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-08-03T02:13:14,535 copying build/lib/sweep/sweep_support/seq2list.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-08-03T02:13:14,537 copying build/lib/sweep/sweep_support/generate_chunk.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-08-03T02:13:14,539 copying build/lib/sweep/sweep_support/nt2int.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-08-03T02:13:14,541 copying build/lib/sweep/sweep_support/__init__.py -> build/bdist.linux-armv7l/wheel/sweep/sweep_support 2024-08-03T02:13:14,543 copying build/lib/sweep/__init__.py -> build/bdist.linux-armv7l/wheel/sweep 2024-08-03T02:13:14,545 copying build/lib/sweep/is_orthonormal.py -> build/bdist.linux-armv7l/wheel/sweep 2024-08-03T02:13:14,546 running install_egg_info 2024-08-03T02:13:14,580 Copying sweep.egg-info to build/bdist.linux-armv7l/wheel/sweep-2.1.3.0-py3.11.egg-info 2024-08-03T02:13:14,593 running install_scripts 2024-08-03T02:13:14,608 creating build/bdist.linux-armv7l/wheel/sweep-2.1.3.0.dist-info/WHEEL 2024-08-03T02:13:14,611 creating '/tmp/pip-wheel-jbfvxeda/sweep-2.1.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-08-03T02:13:14,613 adding 'sweep/__init__.py' 2024-08-03T02:13:14,614 adding 'sweep/calc_proj_mat_size.py' 2024-08-03T02:13:14,616 adding 'sweep/default_proj_mat_ope.py' 2024-08-03T02:13:14,618 adding 'sweep/fas2sweep.py' 2024-08-03T02:13:14,619 adding 'sweep/is_orthonormal.py' 2024-08-03T02:13:14,620 adding 'sweep/orthbase.py' 2024-08-03T02:13:14,622 adding 'sweep/sweep_support/__init__.py' 2024-08-03T02:13:14,624 adding 'sweep/sweep_support/aa2idx.py' 2024-08-03T02:13:14,625 adding 'sweep/sweep_support/aa2int.py' 2024-08-03T02:13:14,626 adding 'sweep/sweep_support/generate_chunk.py' 2024-08-03T02:13:14,627 adding 'sweep/sweep_support/ij2inds.py' 2024-08-03T02:13:14,628 adding 'sweep/sweep_support/mask2vec_bin.py' 2024-08-03T02:13:14,629 adding 'sweep/sweep_support/mask2vec_count.py' 2024-08-03T02:13:14,631 adding 'sweep/sweep_support/nt2int.py' 2024-08-03T02:13:14,632 adding 'sweep/sweep_support/orth.py' 2024-08-03T02:13:14,633 adding 'sweep/sweep_support/seq2list.py' 2024-08-03T02:13:14,634 adding 'sweep/utilities/__init__.py' 2024-08-03T02:13:14,635 adding 'sweep/utilities/fasta_tools.py' 2024-08-03T02:13:14,637 adding 'sweep/utilities/tree_tools.py' 2024-08-03T02:13:14,639 adding 'sweep-2.1.3.0.dist-info/METADATA' 2024-08-03T02:13:14,640 adding 'sweep-2.1.3.0.dist-info/WHEEL' 2024-08-03T02:13:14,641 adding 'sweep-2.1.3.0.dist-info/top_level.txt' 2024-08-03T02:13:14,642 adding 'sweep-2.1.3.0.dist-info/RECORD' 2024-08-03T02:13:14,643 removing build/bdist.linux-armv7l/wheel 2024-08-03T02:13:14,766 Building wheel for sweep (setup.py): finished with status 'done' 2024-08-03T02:13:14,769 Created wheel for sweep: filename=sweep-2.1.3.0-py3-none-any.whl size=15593 sha256=de385b7fb45bb7eb9862d9e6446d2dc59ffcf50db31ff51d18319f03edc24a07 2024-08-03T02:13:14,770 Stored in directory: /tmp/pip-ephem-wheel-cache-jrvfhl3j/wheels/f4/10/fd/c247fd545319c42cee55fb39fb05bb547109cdf5490234cfdb 2024-08-03T02:13:14,782 Successfully built sweep 2024-08-03T02:13:14,786 Removed build tracker: '/tmp/pip-build-tracker-ry9as9sc'