2024-08-13T16:34:45,494 Created temporary directory: /tmp/pip-build-tracker-nxc3ad78 2024-08-13T16:34:45,495 Initialized build tracking at /tmp/pip-build-tracker-nxc3ad78 2024-08-13T16:34:45,496 Created build tracker: /tmp/pip-build-tracker-nxc3ad78 2024-08-13T16:34:45,496 Entered build tracker: /tmp/pip-build-tracker-nxc3ad78 2024-08-13T16:34:45,497 Created temporary directory: /tmp/pip-wheel-aoo9tq0s 2024-08-13T16:34:45,501 Created temporary directory: /tmp/pip-ephem-wheel-cache-2q3c265b 2024-08-13T16:34:45,529 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-08-13T16:34:45,532 2 location(s) to search for versions of npyc: 2024-08-13T16:34:45,532 * https://pypi.org/simple/npyc/ 2024-08-13T16:34:45,532 * https://www.piwheels.org/simple/npyc/ 2024-08-13T16:34:45,533 Fetching project page and analyzing links: https://pypi.org/simple/npyc/ 2024-08-13T16:34:45,534 Getting page https://pypi.org/simple/npyc/ 2024-08-13T16:34:45,535 Found index url https://pypi.org/simple/ 2024-08-13T16:34:45,632 Fetched page https://pypi.org/simple/npyc/ as application/vnd.pypi.simple.v1+json 2024-08-13T16:34:45,638 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/70/51/a36b75924f2d66c3267643fba5827ce806599c7796d796d16e4ef409b536/nPYc-1.0.4-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,638 Found link https://files.pythonhosted.org/packages/59/f9/d837e5faeb061dab18be5da518a37308e6f6b8f5d1f2fdcd22da2ddaa9f9/nPYc-1.0.4.tar.gz (from https://pypi.org/simple/npyc/), version: 1.0.4 2024-08-13T16:34:45,639 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/96/b6/7c905977a55bde0be11233ea1c47c9509ebd9e332e2bcec4e7f582a5722c/nPYc-1.1.0-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,640 Found link https://files.pythonhosted.org/packages/f2/ff/477e3f03ac749d4fbafbc8fb0601f42c9c86bc8c352d3679a0046c29a9a0/nPYc-1.1.0.tar.gz (from https://pypi.org/simple/npyc/), version: 1.1.0 2024-08-13T16:34:45,640 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/3c/a9/66462e34beef7dffa7eb58cf6c4ee659970ab65f3025b34976ae84d74775/nPYc-1.1.1-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,641 Found link https://files.pythonhosted.org/packages/41/4a/7c0bdd21584e52b8e787a9970fb76ccb9cf2345a321bc15372ad21a3d77a/nPYc-1.1.1.tar.gz (from https://pypi.org/simple/npyc/), version: 1.1.1 2024-08-13T16:34:45,642 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/83/f2/2fda345ea54a80d4d4d65903e2bc8272859a2c1eb12c9de2e65bb0481f37/nPYc-1.1.2-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,642 Found link https://files.pythonhosted.org/packages/38/43/2ebd159495767aa83f37ae9bae819e0a7cb48cc2d7949887f64f4dcdc68a/nPYc-1.1.2.tar.gz (from https://pypi.org/simple/npyc/), version: 1.1.2 2024-08-13T16:34:45,643 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/55/5f/a70c5ca7a2ab16ad00d611d709616685e5b0ea873e19cb92779e913b9820/nPYc-1.1.3-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,643 Found link https://files.pythonhosted.org/packages/d8/f5/40340d291a932dc309754bde861f5d69ab65775bca933e78c8872fd5227e/nPYc-1.1.3.tar.gz (from https://pypi.org/simple/npyc/), version: 1.1.3 2024-08-13T16:34:45,644 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/88/4e/224df1c51b47ca38a32866ba526eea19547d4b4a231502aa301c6daf5059/nPYc-1.2.0-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,645 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/c5/b1/10d2e66b568ceef3dfc63d9f877e423775087e0037155c73e7d427bf1f36/nPYc-1.2.1-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,645 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/a4/df/b3483d0557ccd5aa0fe39452ac6becfe2eda1cea5eb4b4d930b6fb8ff336/nPYc-1.2.3-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,646 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/4a/5e/22a7a26ee0bc5a41a7d2293f9ebbb2dc9c8ca8427d1d9b9cccaead3e0bda/nPYc-1.2.4-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,647 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/78/55/13acd307833dd53d30b48f1071fcb581de557601baddddee2d3aacd15b27/nPYc-1.2.5-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,647 Found link https://files.pythonhosted.org/packages/aa/90/fe2f5a62f223d293ab4e07b0162df579777cd9042c2390407e22576b2ab8/nPYc-1.2.5.tar.gz (from https://pypi.org/simple/npyc/), version: 1.2.5 2024-08-13T16:34:45,648 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/43/ba/46dd8d3372c395dae2eba87fd578ded6f51fbf6d0f79f8738fb8e8116f11/nPYc-1.2.6-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,648 Found link https://files.pythonhosted.org/packages/9b/3b/e1bb60fdbc83aad22701484d0f1e76aed83080f6f1f9af9e80980de922ca/nPYc-1.2.6.tar.gz (from https://pypi.org/simple/npyc/), version: 1.2.6 2024-08-13T16:34:45,649 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/99/f1/6f00a94f6c33de9a184109f5418ba11bb676eeba8035422d8b195360f761/nPYc-1.2.7-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,649 Found link https://files.pythonhosted.org/packages/3e/30/56b9c50e6793aabf2bb7190562fbe1f03013d551223a772e8ee97173d14e/nPYc-1.2.7.tar.gz (from https://pypi.org/simple/npyc/), version: 1.2.7 2024-08-13T16:34:45,650 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/64/c8/3e438385cdbfd5d69002a0951afedc684881b54a7ef6e20de56097a17cd0/nPYc-1.2.8-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,650 Found link https://files.pythonhosted.org/packages/eb/8f/b5c03c21aabd0143ff7def52e37ca7b7926510bdff1c575607442251ae2d/nPYc-1.2.8.tar.gz (from https://pypi.org/simple/npyc/), version: 1.2.8 2024-08-13T16:34:45,651 Skipping link: No binaries permitted for npyc: https://files.pythonhosted.org/packages/39/15/ff25270e806d4e904d965b5f616f43e8ddb60f6ea0858856703e35f52e0e/nPYc-2.0-py3-none-any.whl (from https://pypi.org/simple/npyc/) 2024-08-13T16:34:45,652 Found link https://files.pythonhosted.org/packages/9f/26/1604aa5b0612b42da545f52de5b99ed5e4d8d168704d4a9d8214bbaa7c07/nPYc-2.0.tar.gz (from https://pypi.org/simple/npyc/), version: 2.0 2024-08-13T16:34:45,652 Fetching project page and analyzing links: https://www.piwheels.org/simple/npyc/ 2024-08-13T16:34:45,653 Getting page https://www.piwheels.org/simple/npyc/ 2024-08-13T16:34:45,654 Found index url https://www.piwheels.org/simple/ 2024-08-13T16:34:45,696 Fetched page https://www.piwheels.org/simple/npyc/ as text/html 2024-08-13T16:34:45,700 Skipping link: No binaries permitted for npyc: https://www.piwheels.org/simple/npyc/nPYc-1.2.8-py3-none-any.whl#sha256=7b93503a535e4958e9ec6c8d3d12df760ff9a6229e5aa8946cf38b9861cd4db2 (from https://www.piwheels.org/simple/npyc/) 2024-08-13T16:34:45,700 Skipping link: No binaries permitted for npyc: https://www.piwheels.org/simple/npyc/nPYc-1.2.7-py3-none-any.whl#sha256=a7060a9291fbbac3b30d3a989b7d0296918158a7dd1239fbfcd439f18d98890f (from https://www.piwheels.org/simple/npyc/) 2024-08-13T16:34:45,701 Skipping link: No binaries permitted for npyc: https://www.piwheels.org/simple/npyc/nPYc-1.2.6-py3-none-any.whl#sha256=faed6be98cf44fab31a3976e9c228eef635c7109e57e653c481a6c3a32938790 (from https://www.piwheels.org/simple/npyc/) 2024-08-13T16:34:45,701 Skipping link: No binaries permitted for npyc: https://www.piwheels.org/simple/npyc/nPYc-1.2.5-py3-none-any.whl#sha256=3eceddfcbd152dd0b35b8460998eef5bd8329ba359e5491b88f811f402489036 (from https://www.piwheels.org/simple/npyc/) 2024-08-13T16:34:45,702 Skipping link: No binaries permitted for npyc: https://www.piwheels.org/simple/npyc/nPYc-1.1.3-py3-none-any.whl#sha256=93273fdebf94627160600ccc7b58a026b7cbe00ef94e20d926f1fd7afd7cab7a (from https://www.piwheels.org/simple/npyc/) 2024-08-13T16:34:45,703 Skipping link: No binaries permitted for npyc: https://www.piwheels.org/simple/npyc/nPYc-1.1.2-py3-none-any.whl#sha256=0b3524c840f7ea407035ecbb37997438c595613ddf46d1918642b7e803ed7362 (from https://www.piwheels.org/simple/npyc/) 2024-08-13T16:34:45,703 Skipping link: No binaries permitted for npyc: https://www.piwheels.org/simple/npyc/nPYc-1.1.1-py3-none-any.whl#sha256=dc1be4f578a342f8fdb8b350760a53b8e6471a87f68cfdef908642f7157e0dd2 (from https://www.piwheels.org/simple/npyc/) 2024-08-13T16:34:45,704 Skipping link: No binaries permitted for npyc: https://www.piwheels.org/simple/npyc/nPYc-1.1.0-py3-none-any.whl#sha256=4bb1d3de7f0ff670d80fa46641b160311a9c9677548c7468f3cc3f17a4012025 (from https://www.piwheels.org/simple/npyc/) 2024-08-13T16:34:45,704 Skipping link: No binaries permitted for npyc: https://www.piwheels.org/simple/npyc/nPYc-1.0.4-py3-none-any.whl#sha256=7a86f68a638a86c8e8164d7cf61b47c156e2901534927f8fd5a8bbdcdbe358fc (from https://www.piwheels.org/simple/npyc/) 2024-08-13T16:34:45,705 Skipping link: not a file: https://www.piwheels.org/simple/npyc/ 2024-08-13T16:34:45,705 Skipping link: not a file: https://pypi.org/simple/npyc/ 2024-08-13T16:34:45,726 Given no hashes to check 1 links for project 'npyc': discarding no candidates 2024-08-13T16:34:45,746 Collecting npyc==2.0 2024-08-13T16:34:45,748 Created temporary directory: /tmp/pip-unpack-t5dg8atl 2024-08-13T16:34:45,843 Downloading nPYc-2.0.tar.gz (309 kB) 2024-08-13T16:34:46,225 Added npyc==2.0 from https://files.pythonhosted.org/packages/9f/26/1604aa5b0612b42da545f52de5b99ed5e4d8d168704d4a9d8214bbaa7c07/nPYc-2.0.tar.gz to build tracker '/tmp/pip-build-tracker-nxc3ad78' 2024-08-13T16:34:46,227 Running setup.py (path:/tmp/pip-wheel-aoo9tq0s/npyc_44f4dc4f02e94f4d8322ac28933ced8e/setup.py) egg_info for package npyc 2024-08-13T16:34:46,228 Created temporary directory: /tmp/pip-pip-egg-info-uzppj3pn 2024-08-13T16:34:46,229 Preparing metadata (setup.py): started 2024-08-13T16:34:46,230 Running command python setup.py egg_info 2024-08-13T16:34:46,785 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:268: UserWarning: Unknown distribution option: 'documentation' 2024-08-13T16:34:46,785 warnings.warn(msg) 2024-08-13T16:34:47,387 running egg_info 2024-08-13T16:34:47,388 creating /tmp/pip-pip-egg-info-uzppj3pn/nPYc.egg-info 2024-08-13T16:34:47,415 writing /tmp/pip-pip-egg-info-uzppj3pn/nPYc.egg-info/PKG-INFO 2024-08-13T16:34:47,419 writing dependency_links to /tmp/pip-pip-egg-info-uzppj3pn/nPYc.egg-info/dependency_links.txt 2024-08-13T16:34:47,421 writing requirements to /tmp/pip-pip-egg-info-uzppj3pn/nPYc.egg-info/requires.txt 2024-08-13T16:34:47,422 writing top-level names to /tmp/pip-pip-egg-info-uzppj3pn/nPYc.egg-info/top_level.txt 2024-08-13T16:34:47,423 writing manifest file '/tmp/pip-pip-egg-info-uzppj3pn/nPYc.egg-info/SOURCES.txt' 2024-08-13T16:34:47,519 reading manifest file '/tmp/pip-pip-egg-info-uzppj3pn/nPYc.egg-info/SOURCES.txt' 2024-08-13T16:34:47,521 reading manifest template 'MANIFEST.in' 2024-08-13T16:34:47,522 warning: no files found matching 'COPYING.txt' 2024-08-13T16:34:47,705 adding license file 'LICENSE.md' 2024-08-13T16:34:47,711 writing manifest file '/tmp/pip-pip-egg-info-uzppj3pn/nPYc.egg-info/SOURCES.txt' 2024-08-13T16:34:47,825 Preparing metadata (setup.py): finished with status 'done' 2024-08-13T16:34:47,829 Source in /tmp/pip-wheel-aoo9tq0s/npyc_44f4dc4f02e94f4d8322ac28933ced8e has version 2.0, which satisfies requirement npyc==2.0 from https://files.pythonhosted.org/packages/9f/26/1604aa5b0612b42da545f52de5b99ed5e4d8d168704d4a9d8214bbaa7c07/nPYc-2.0.tar.gz 2024-08-13T16:34:47,830 Removed npyc==2.0 from https://files.pythonhosted.org/packages/9f/26/1604aa5b0612b42da545f52de5b99ed5e4d8d168704d4a9d8214bbaa7c07/nPYc-2.0.tar.gz from build tracker '/tmp/pip-build-tracker-nxc3ad78' 2024-08-13T16:34:47,838 Created temporary directory: /tmp/pip-unpack-htgieq3z 2024-08-13T16:34:47,839 Created temporary directory: /tmp/pip-unpack-it764qes 2024-08-13T16:34:47,840 Building wheels for collected packages: npyc 2024-08-13T16:34:47,845 Created temporary directory: /tmp/pip-wheel-v3mzx96p 2024-08-13T16:34:47,845 Building wheel for npyc (setup.py): started 2024-08-13T16:34:47,846 Destination directory: /tmp/pip-wheel-v3mzx96p 2024-08-13T16:34:47,847 Running command python setup.py bdist_wheel 2024-08-13T16:34:48,448 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:268: UserWarning: Unknown distribution option: 'documentation' 2024-08-13T16:34:48,448 warnings.warn(msg) 2024-08-13T16:34:48,982 running bdist_wheel 2024-08-13T16:34:49,127 running build 2024-08-13T16:34:49,128 running build_py 2024-08-13T16:34:49,158 creating build 2024-08-13T16:34:49,158 creating build/lib 2024-08-13T16:34:49,159 creating build/lib/nPYc 2024-08-13T16:34:49,160 copying nPYc/_toolboxPath.py -> build/lib/nPYc 2024-08-13T16:34:49,162 copying nPYc/__init__.py -> build/lib/nPYc 2024-08-13T16:34:49,165 creating build/lib/nPYc/plotting 2024-08-13T16:34:49,166 copying nPYc/plotting/_plotNMRsolvent.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,168 copying nPYc/plotting/_violinPlot.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,169 copying nPYc/plotting/_plotTargeted.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,171 copying nPYc/plotting/_plotLOQRunOrder.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,173 copying nPYc/plotting/_plotTIC.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,176 copying nPYc/plotting/_plotBatchAndROCorrection.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,178 copying nPYc/plotting/_jointplotRSDvCorrelation.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,180 copying nPYc/plotting/_plotDiscreteLoadings.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,182 copying nPYc/plotting/_plotIonMap.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,184 copying nPYc/plotting/_plotRSDs.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,186 copying nPYc/plotting/_plotLOQFeatureViolin.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,189 copying nPYc/plotting/_plotFeatureAccuracyPrecision.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,191 copying nPYc/plotting/_plotNMRbaseline.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,193 copying nPYc/plotting/_nmrPlotting.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,195 copying nPYc/plotting/_plotFeatureLOQ.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,198 copying nPYc/plotting/_rangeFrameLocator.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,199 copying nPYc/plotting/_plotting.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,202 copying nPYc/plotting/__init__.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,204 copying nPYc/plotting/_plotFeatureRanges.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,206 copying nPYc/plotting/_multivariatePlotting.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,209 copying nPYc/plotting/_plotTargetedFeatureDistribution.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,211 copying nPYc/plotting/_plotSpectralVariance.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,213 copying nPYc/plotting/_plotVariableScatter.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,216 copying nPYc/plotting/_correlationSpectroscopy.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,219 copying nPYc/plotting/_plotNMRcalibration.py -> build/lib/nPYc/plotting 2024-08-13T16:34:49,222 creating build/lib/nPYc/utilities 2024-08-13T16:34:49,223 copying nPYc/utilities/_importBrukerSpectrum.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,226 copying nPYc/utilities/generic.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,228 copying nPYc/utilities/_fitPeak.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,230 copying nPYc/utilities/_errorHandling.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,232 copying nPYc/utilities/_npc_sampleledger.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,234 copying nPYc/utilities/_massSpectrumBuilder.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,236 copying nPYc/utilities/_getMetadataFromWatersRaw.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,238 copying nPYc/utilities/_getMetadataFromBrukerNMR.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,239 copying nPYc/utilities/_getMetadataFrommzML.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,241 copying nPYc/utilities/_checkInRange.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,243 copying nPYc/utilities/extractParams.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,245 copying nPYc/utilities/_internal.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,246 copying nPYc/utilities/_conditionalJoin.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,248 copying nPYc/utilities/ms.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,250 copying nPYc/utilities/_lineWidth.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,252 copying nPYc/utilities/_nmr.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,254 copying nPYc/utilities/__init__.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,255 copying nPYc/utilities/_buildSpectrumFromQIfeature.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,257 copying nPYc/utilities/_calibratePPMscale.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,259 copying nPYc/utilities/_filters.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,261 copying nPYc/utilities/_addReferenceRanges.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,263 copying nPYc/utilities/_readBrukerXML.py -> build/lib/nPYc/utilities 2024-08-13T16:34:49,267 creating build/lib/nPYc/reports 2024-08-13T16:34:49,268 copying nPYc/reports/featureID.py -> build/lib/nPYc/reports 2024-08-13T16:34:49,270 copying nPYc/reports/_generateReportTargeted.py -> build/lib/nPYc/reports 2024-08-13T16:34:49,274 copying nPYc/reports/_generateReportMS.py -> build/lib/nPYc/reports 2024-08-13T16:34:49,279 copying nPYc/reports/generateReport.py -> build/lib/nPYc/reports 2024-08-13T16:34:49,281 copying nPYc/reports/multivariateReport.py -> build/lib/nPYc/reports 2024-08-13T16:34:49,285 copying nPYc/reports/_finalReportPeakPantheR.py -> build/lib/nPYc/reports 2024-08-13T16:34:49,287 copying nPYc/reports/_generateSampleReport.py -> build/lib/nPYc/reports 2024-08-13T16:34:49,290 copying nPYc/reports/metadata.py -> build/lib/nPYc/reports 2024-08-13T16:34:49,291 copying nPYc/reports/__init__.py -> build/lib/nPYc/reports 2024-08-13T16:34:49,293 copying nPYc/reports/_generateReportNMR.py -> build/lib/nPYc/reports 2024-08-13T16:34:49,296 copying nPYc/reports/_generateFeatureDistributionReport.py -> build/lib/nPYc/reports 2024-08-13T16:34:49,298 copying nPYc/reports/_generateBasicPCAReport.py -> build/lib/nPYc/reports 2024-08-13T16:34:49,300 creating build/lib/nPYc/batchAndROCorrection 2024-08-13T16:34:49,301 copying nPYc/batchAndROCorrection/__init__.py -> build/lib/nPYc/batchAndROCorrection 2024-08-13T16:34:49,303 copying nPYc/batchAndROCorrection/_batchAndROCorrection.py -> build/lib/nPYc/batchAndROCorrection 2024-08-13T16:34:49,306 creating build/lib/nPYc/enumerations 2024-08-13T16:34:49,308 copying nPYc/enumerations/_enumerations.py -> build/lib/nPYc/enumerations 2024-08-13T16:34:49,310 copying nPYc/enumerations/__init__.py -> build/lib/nPYc/enumerations 2024-08-13T16:34:49,313 creating build/lib/nPYc/objects 2024-08-13T16:34:49,314 copying nPYc/objects/_targetedDataset.py -> build/lib/nPYc/objects 2024-08-13T16:34:49,322 copying nPYc/objects/_dataset.py -> build/lib/nPYc/objects 2024-08-13T16:34:49,327 copying nPYc/objects/_msDataset.py -> build/lib/nPYc/objects 2024-08-13T16:34:49,331 copying nPYc/objects/__init__.py -> build/lib/nPYc/objects 2024-08-13T16:34:49,333 copying nPYc/objects/_nmrDataset.py -> build/lib/nPYc/objects 2024-08-13T16:34:49,336 creating build/lib/nPYc/multivariate 2024-08-13T16:34:49,337 copying nPYc/multivariate/multivariateUtilities.py -> build/lib/nPYc/multivariate 2024-08-13T16:34:49,340 copying nPYc/multivariate/__init__.py -> build/lib/nPYc/multivariate 2024-08-13T16:34:49,342 copying nPYc/multivariate/exploratoryAnalysisPCA.py -> build/lib/nPYc/multivariate 2024-08-13T16:34:49,346 creating build/lib/nPYc/utilities/normalisation 2024-08-13T16:34:49,346 copying nPYc/utilities/normalisation/_normaliserABC.py -> build/lib/nPYc/utilities/normalisation 2024-08-13T16:34:49,348 copying nPYc/utilities/normalisation/_totalAreaNormaliser.py -> build/lib/nPYc/utilities/normalisation 2024-08-13T16:34:49,350 copying nPYc/utilities/normalisation/_probabilisticQuotientNormaliser.py -> build/lib/nPYc/utilities/normalisation 2024-08-13T16:34:49,352 copying nPYc/utilities/normalisation/__init__.py -> build/lib/nPYc/utilities/normalisation 2024-08-13T16:34:49,353 copying nPYc/utilities/normalisation/_nullNormaliser.py -> build/lib/nPYc/utilities/normalisation 2024-08-13T16:34:49,355 running egg_info 2024-08-13T16:34:49,382 writing nPYc.egg-info/PKG-INFO 2024-08-13T16:34:49,385 writing dependency_links to nPYc.egg-info/dependency_links.txt 2024-08-13T16:34:49,387 writing requirements to nPYc.egg-info/requires.txt 2024-08-13T16:34:49,388 writing top-level names to nPYc.egg-info/top_level.txt 2024-08-13T16:34:49,425 reading manifest file 'nPYc.egg-info/SOURCES.txt' 2024-08-13T16:34:49,430 reading manifest template 'MANIFEST.in' 2024-08-13T16:34:49,431 warning: no files found matching 'COPYING.txt' 2024-08-13T16:34:49,629 adding license file 'LICENSE.md' 2024-08-13T16:34:49,636 writing manifest file 'nPYc.egg-info/SOURCES.txt' 2024-08-13T16:34:49,639 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'nPYc.StudyDesigns' is absent from the `packages` configuration. 2024-08-13T16:34:49,639 !! 2024-08-13T16:34:49,641 ******************************************************************************** 2024-08-13T16:34:49,641 ############################ 2024-08-13T16:34:49,642 # Package would be ignored # 2024-08-13T16:34:49,642 ############################ 2024-08-13T16:34:49,643 Python recognizes 'nPYc.StudyDesigns' as an importable package[^1], 2024-08-13T16:34:49,644 but it is absent from setuptools' `packages` configuration. 2024-08-13T16:34:49,645 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-13T16:34:49,646 package, please make sure that 'nPYc.StudyDesigns' is explicitly added 2024-08-13T16:34:49,646 to the `packages` configuration field. 2024-08-13T16:34:49,648 Alternatively, you can also rely on setuptools' discovery methods 2024-08-13T16:34:49,648 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-13T16:34:49,649 instead of `find_packages(...)`/`find:`). 2024-08-13T16:34:49,650 You can read more about "package discovery" on setuptools documentation page: 2024-08-13T16:34:49,651 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-13T16:34:49,652 If you don't want 'nPYc.StudyDesigns' to be distributed and are 2024-08-13T16:34:49,653 already explicitly excluding 'nPYc.StudyDesigns' via 2024-08-13T16:34:49,653 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-13T16:34:49,654 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-13T16:34:49,654 combination with a more fine grained `package-data` configuration. 2024-08-13T16:34:49,655 You can read more about "package data files" on setuptools documentation page: 2024-08-13T16:34:49,657 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-13T16:34:49,658 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-13T16:34:49,659 even if it does not contain any `.py` files. 2024-08-13T16:34:49,659 On the other hand, currently there is no concept of package data 2024-08-13T16:34:49,660 directory, all directories are treated like packages. 2024-08-13T16:34:49,660 ******************************************************************************** 2024-08-13T16:34:49,662 !! 2024-08-13T16:34:49,662 check.warn(importable) 2024-08-13T16:34:49,663 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'nPYc.StudyDesigns.BlankISATAB' is absent from the `packages` configuration. 2024-08-13T16:34:49,664 !! 2024-08-13T16:34:49,665 ******************************************************************************** 2024-08-13T16:34:49,666 ############################ 2024-08-13T16:34:49,666 # Package would be ignored # 2024-08-13T16:34:49,667 ############################ 2024-08-13T16:34:49,668 Python recognizes 'nPYc.StudyDesigns.BlankISATAB' as an importable package[^1], 2024-08-13T16:34:49,668 but it is absent from setuptools' `packages` configuration. 2024-08-13T16:34:49,669 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-13T16:34:49,670 package, please make sure that 'nPYc.StudyDesigns.BlankISATAB' is explicitly added 2024-08-13T16:34:49,671 to the `packages` configuration field. 2024-08-13T16:34:49,672 Alternatively, you can also rely on setuptools' discovery methods 2024-08-13T16:34:49,673 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-13T16:34:49,674 instead of `find_packages(...)`/`find:`). 2024-08-13T16:34:49,675 You can read more about "package discovery" on setuptools documentation page: 2024-08-13T16:34:49,676 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-13T16:34:49,678 If you don't want 'nPYc.StudyDesigns.BlankISATAB' to be distributed and are 2024-08-13T16:34:49,679 already explicitly excluding 'nPYc.StudyDesigns.BlankISATAB' via 2024-08-13T16:34:49,679 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-13T16:34:49,680 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-13T16:34:49,680 combination with a more fine grained `package-data` configuration. 2024-08-13T16:34:49,681 You can read more about "package data files" on setuptools documentation page: 2024-08-13T16:34:49,683 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-13T16:34:49,685 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-13T16:34:49,685 even if it does not contain any `.py` files. 2024-08-13T16:34:49,686 On the other hand, currently there is no concept of package data 2024-08-13T16:34:49,687 directory, all directories are treated like packages. 2024-08-13T16:34:49,687 ******************************************************************************** 2024-08-13T16:34:49,688 !! 2024-08-13T16:34:49,689 check.warn(importable) 2024-08-13T16:34:49,689 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'nPYc.StudyDesigns.ISATABFieldMappings' is absent from the `packages` configuration. 2024-08-13T16:34:49,690 !! 2024-08-13T16:34:49,691 ******************************************************************************** 2024-08-13T16:34:49,692 ############################ 2024-08-13T16:34:49,693 # Package would be ignored # 2024-08-13T16:34:49,693 ############################ 2024-08-13T16:34:49,694 Python recognizes 'nPYc.StudyDesigns.ISATABFieldMappings' as an importable package[^1], 2024-08-13T16:34:49,694 but it is absent from setuptools' `packages` configuration. 2024-08-13T16:34:49,696 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-13T16:34:49,697 package, please make sure that 'nPYc.StudyDesigns.ISATABFieldMappings' is explicitly added 2024-08-13T16:34:49,697 to the `packages` configuration field. 2024-08-13T16:34:49,699 Alternatively, you can also rely on setuptools' discovery methods 2024-08-13T16:34:49,699 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-13T16:34:49,700 instead of `find_packages(...)`/`find:`). 2024-08-13T16:34:49,701 You can read more about "package discovery" on setuptools documentation page: 2024-08-13T16:34:49,702 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-13T16:34:49,704 If you don't want 'nPYc.StudyDesigns.ISATABFieldMappings' to be distributed and are 2024-08-13T16:34:49,704 already explicitly excluding 'nPYc.StudyDesigns.ISATABFieldMappings' via 2024-08-13T16:34:49,705 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-13T16:34:49,705 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-13T16:34:49,706 combination with a more fine grained `package-data` configuration. 2024-08-13T16:34:49,707 You can read more about "package data files" on setuptools documentation page: 2024-08-13T16:34:49,708 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-13T16:34:49,710 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-13T16:34:49,711 even if it does not contain any `.py` files. 2024-08-13T16:34:49,711 On the other hand, currently there is no concept of package data 2024-08-13T16:34:49,712 directory, all directories are treated like packages. 2024-08-13T16:34:49,713 ******************************************************************************** 2024-08-13T16:34:49,714 !! 2024-08-13T16:34:49,715 check.warn(importable) 2024-08-13T16:34:49,715 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'nPYc.StudyDesigns.SOP' is absent from the `packages` configuration. 2024-08-13T16:34:49,716 !! 2024-08-13T16:34:49,717 ******************************************************************************** 2024-08-13T16:34:49,718 ############################ 2024-08-13T16:34:49,719 # Package would be ignored # 2024-08-13T16:34:49,719 ############################ 2024-08-13T16:34:49,720 Python recognizes 'nPYc.StudyDesigns.SOP' as an importable package[^1], 2024-08-13T16:34:49,721 but it is absent from setuptools' `packages` configuration. 2024-08-13T16:34:49,722 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-13T16:34:49,722 package, please make sure that 'nPYc.StudyDesigns.SOP' is explicitly added 2024-08-13T16:34:49,723 to the `packages` configuration field. 2024-08-13T16:34:49,725 Alternatively, you can also rely on setuptools' discovery methods 2024-08-13T16:34:49,725 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-13T16:34:49,727 instead of `find_packages(...)`/`find:`). 2024-08-13T16:34:49,728 You can read more about "package discovery" on setuptools documentation page: 2024-08-13T16:34:49,729 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-13T16:34:49,731 If you don't want 'nPYc.StudyDesigns.SOP' to be distributed and are 2024-08-13T16:34:49,731 already explicitly excluding 'nPYc.StudyDesigns.SOP' via 2024-08-13T16:34:49,732 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-13T16:34:49,733 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-13T16:34:49,733 combination with a more fine grained `package-data` configuration. 2024-08-13T16:34:49,734 You can read more about "package data files" on setuptools documentation page: 2024-08-13T16:34:49,736 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-13T16:34:49,738 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-13T16:34:49,738 even if it does not contain any `.py` files. 2024-08-13T16:34:49,739 On the other hand, currently there is no concept of package data 2024-08-13T16:34:49,739 directory, all directories are treated like packages. 2024-08-13T16:34:49,740 ******************************************************************************** 2024-08-13T16:34:49,741 !! 2024-08-13T16:34:49,742 check.warn(importable) 2024-08-13T16:34:49,742 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'nPYc.Templates' is absent from the `packages` configuration. 2024-08-13T16:34:49,743 !! 2024-08-13T16:34:49,744 ******************************************************************************** 2024-08-13T16:34:49,744 ############################ 2024-08-13T16:34:49,745 # Package would be ignored # 2024-08-13T16:34:49,745 ############################ 2024-08-13T16:34:49,746 Python recognizes 'nPYc.Templates' as an importable package[^1], 2024-08-13T16:34:49,746 but it is absent from setuptools' `packages` configuration. 2024-08-13T16:34:49,748 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-13T16:34:49,748 package, please make sure that 'nPYc.Templates' is explicitly added 2024-08-13T16:34:49,749 to the `packages` configuration field. 2024-08-13T16:34:49,750 Alternatively, you can also rely on setuptools' discovery methods 2024-08-13T16:34:49,750 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-13T16:34:49,751 instead of `find_packages(...)`/`find:`). 2024-08-13T16:34:49,752 You can read more about "package discovery" on setuptools documentation page: 2024-08-13T16:34:49,753 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-13T16:34:49,755 If you don't want 'nPYc.Templates' to be distributed and are 2024-08-13T16:34:49,755 already explicitly excluding 'nPYc.Templates' via 2024-08-13T16:34:49,756 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-13T16:34:49,757 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-13T16:34:49,757 combination with a more fine grained `package-data` configuration. 2024-08-13T16:34:49,758 You can read more about "package data files" on setuptools documentation page: 2024-08-13T16:34:49,760 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-13T16:34:49,762 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-13T16:34:49,763 even if it does not contain any `.py` files. 2024-08-13T16:34:49,763 On the other hand, currently there is no concept of package data 2024-08-13T16:34:49,764 directory, all directories are treated like packages. 2024-08-13T16:34:49,765 ******************************************************************************** 2024-08-13T16:34:49,766 !! 2024-08-13T16:34:49,767 check.warn(importable) 2024-08-13T16:34:49,768 creating build/lib/nPYc/StudyDesigns 2024-08-13T16:34:49,769 copying nPYc/StudyDesigns/Abbreviations.csv -> build/lib/nPYc/StudyDesigns 2024-08-13T16:34:49,769 copying nPYc/StudyDesigns/AssayParameters.json -> build/lib/nPYc/StudyDesigns 2024-08-13T16:34:49,770 copying nPYc/StudyDesigns/AssayParametersSchema.json -> build/lib/nPYc/StudyDesigns 2024-08-13T16:34:49,771 copying nPYc/StudyDesigns/BI-LISA_analyteGroups.json -> build/lib/nPYc/StudyDesigns 2024-08-13T16:34:49,771 copying nPYc/StudyDesigns/BI-LISA_reference_groups.json -> build/lib/nPYc/StudyDesigns 2024-08-13T16:34:49,772 copying nPYc/StudyDesigns/BI-LISA_reference_ranges.json -> build/lib/nPYc/StudyDesigns 2024-08-13T16:34:49,773 copying nPYc/StudyDesigns/BI-LISAref.csv -> build/lib/nPYc/StudyDesigns 2024-08-13T16:34:49,774 copying nPYc/StudyDesigns/DilutionSeries.csv -> build/lib/nPYc/StudyDesigns 2024-08-13T16:34:49,774 copying nPYc/StudyDesigns/ExactMasses.csv -> build/lib/nPYc/StudyDesigns 2024-08-13T16:34:49,775 copying nPYc/StudyDesigns/colours.json -> build/lib/nPYc/StudyDesigns 2024-08-13T16:34:49,776 copying nPYc/StudyDesigns/urine_quant_b_reference_groups.json -> build/lib/nPYc/StudyDesigns 2024-08-13T16:34:49,776 creating build/lib/nPYc/StudyDesigns/BlankISATAB 2024-08-13T16:34:49,777 creating build/lib/nPYc/StudyDesigns/BlankISATAB/blank-ms 2024-08-13T16:34:49,777 copying nPYc/StudyDesigns/BlankISATAB/blank-ms/a_npc-test-study_metabolite_profiling_mass_spectrometry.txt -> build/lib/nPYc/StudyDesigns/BlankISATAB/blank-ms 2024-08-13T16:34:49,777 copying nPYc/StudyDesigns/BlankISATAB/blank-ms/i_Investigation.txt -> build/lib/nPYc/StudyDesigns/BlankISATAB/blank-ms 2024-08-13T16:34:49,778 copying nPYc/StudyDesigns/BlankISATAB/blank-ms/s_NPC-Test-Study.txt -> build/lib/nPYc/StudyDesigns/BlankISATAB/blank-ms 2024-08-13T16:34:49,778 creating build/lib/nPYc/StudyDesigns/BlankISATAB/blank-nmr 2024-08-13T16:34:49,779 copying nPYc/StudyDesigns/BlankISATAB/blank-nmr/a_npc-test-study_metabolite_profiling_NMR_spectroscopy.txt -> build/lib/nPYc/StudyDesigns/BlankISATAB/blank-nmr 2024-08-13T16:34:49,779 copying nPYc/StudyDesigns/BlankISATAB/blank-nmr/i_Investigation.txt -> build/lib/nPYc/StudyDesigns/BlankISATAB/blank-nmr 2024-08-13T16:34:49,780 copying nPYc/StudyDesigns/BlankISATAB/blank-nmr/s_NPC-Test-Study.txt -> build/lib/nPYc/StudyDesigns/BlankISATAB/blank-nmr 2024-08-13T16:34:49,780 creating build/lib/nPYc/StudyDesigns/ISATABFieldMappings 2024-08-13T16:34:49,781 copying nPYc/StudyDesigns/ISATABFieldMappings/MSFields.json -> build/lib/nPYc/StudyDesigns/ISATABFieldMappings 2024-08-13T16:34:49,781 copying nPYc/StudyDesigns/ISATABFieldMappings/NMRFields.json -> build/lib/nPYc/StudyDesigns/ISATABFieldMappings 2024-08-13T16:34:49,781 creating build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,782 copying nPYc/StudyDesigns/SOP/AminoAcidMS.json -> build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,782 copying nPYc/StudyDesigns/SOP/BrukerBI-LISA.json -> build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,783 copying nPYc/StudyDesigns/SOP/BrukerBI-QUANT-PS.json -> build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,784 copying nPYc/StudyDesigns/SOP/BrukerQuant-UR.json -> build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,784 copying nPYc/StudyDesigns/SOP/Generic.json -> build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,785 copying nPYc/StudyDesigns/SOP/GenericMS.json -> build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,786 copying nPYc/StudyDesigns/SOP/GenericNMRblood.json -> build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,786 copying nPYc/StudyDesigns/SOP/GenericNMRurine.json -> build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,787 copying nPYc/StudyDesigns/SOP/NMR1Djresblood.json -> build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,788 copying nPYc/StudyDesigns/SOP/NMR1Djresurine.json -> build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,789 copying nPYc/StudyDesigns/SOP/OxylipinMS.json -> build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,790 copying nPYc/StudyDesigns/SOP/TryptophanMS.json -> build/lib/nPYc/StudyDesigns/SOP 2024-08-13T16:34:49,790 creating build/lib/nPYc/Templates 2024-08-13T16:34:49,791 copying nPYc/Templates/ID_request_MS.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,792 copying nPYc/Templates/MS_BatchCorrectionAssessmentReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,792 copying nPYc/Templates/MS_BatchCorrectionSummaryReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,793 copying nPYc/Templates/MS_CorrelationToDilutionReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,794 copying nPYc/Templates/MS_FeatureSelectionReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,795 copying nPYc/Templates/MS_FeatureSummaryReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,795 copying nPYc/Templates/MS_FinalSummaryReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,796 copying nPYc/Templates/MS_FinalSummaryReport_Abridged.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,797 copying nPYc/Templates/MS_peakPantheR_FinalSummaryReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,798 copying nPYc/Templates/NMR_FinalSummaryReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,798 copying nPYc/Templates/NMR_QCSummaryReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,799 copying nPYc/Templates/NPC_MultivariateReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,802 copying nPYc/Templates/Targeted_FeatureSummaryReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,804 copying nPYc/Templates/Targeted_FinalReportMS.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,807 copying nPYc/Templates/Targeted_FinalReportNMR.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,809 copying nPYc/Templates/Targeted_MergeLOQReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,811 copying nPYc/Templates/base_QC.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,813 copying nPYc/Templates/base_generic.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,816 copying nPYc/Templates/featureDistributionReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,818 copying nPYc/Templates/generateReportBILISA.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,820 copying nPYc/Templates/generateReportBIQuantUR.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,822 copying nPYc/Templates/generateReportTargeted.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,825 copying nPYc/Templates/generateSampleReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,828 copying nPYc/Templates/npc-main.css -> build/lib/nPYc/Templates 2024-08-13T16:34:49,830 copying nPYc/Templates/pcaReport.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,833 copying nPYc/Templates/sampleReportChunk.html -> build/lib/nPYc/Templates 2024-08-13T16:34:49,835 copying nPYc/Templates/toolbox_logo.png -> build/lib/nPYc/Templates 2024-08-13T16:34:49,870 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-08-13T16:34:49,871 !! 2024-08-13T16:34:49,872 ******************************************************************************** 2024-08-13T16:34:49,873 Please avoid running ``setup.py`` directly. 2024-08-13T16:34:49,873 Instead, use pypa/build, pypa/installer or other 2024-08-13T16:34:49,874 standards-based tools. 2024-08-13T16:34:49,875 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-08-13T16:34:49,876 ******************************************************************************** 2024-08-13T16:34:49,877 !! 2024-08-13T16:34:49,877 self.initialize_options() 2024-08-13T16:34:49,901 installing to build/bdist.linux-armv7l/wheel 2024-08-13T16:34:49,902 running install 2024-08-13T16:34:49,926 running install_lib 2024-08-13T16:34:49,953 creating build/bdist.linux-armv7l 2024-08-13T16:34:49,954 creating build/bdist.linux-armv7l/wheel 2024-08-13T16:34:49,957 creating build/bdist.linux-armv7l/wheel/nPYc 2024-08-13T16:34:49,958 copying build/lib/nPYc/_toolboxPath.py -> build/bdist.linux-armv7l/wheel/nPYc 2024-08-13T16:34:49,961 creating build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,963 copying build/lib/nPYc/plotting/_plotNMRsolvent.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,965 copying build/lib/nPYc/plotting/_violinPlot.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,967 copying build/lib/nPYc/plotting/_plotTargeted.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,970 copying build/lib/nPYc/plotting/_plotLOQRunOrder.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,973 copying build/lib/nPYc/plotting/_plotTIC.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,976 copying build/lib/nPYc/plotting/_plotBatchAndROCorrection.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,978 copying build/lib/nPYc/plotting/_jointplotRSDvCorrelation.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,980 copying build/lib/nPYc/plotting/_plotDiscreteLoadings.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,981 copying build/lib/nPYc/plotting/_plotIonMap.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,984 copying build/lib/nPYc/plotting/_plotRSDs.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,986 copying build/lib/nPYc/plotting/_plotLOQFeatureViolin.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,989 copying build/lib/nPYc/plotting/_plotFeatureAccuracyPrecision.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,991 copying build/lib/nPYc/plotting/_plotNMRbaseline.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,993 copying build/lib/nPYc/plotting/_nmrPlotting.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,995 copying build/lib/nPYc/plotting/_plotFeatureLOQ.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,997 copying build/lib/nPYc/plotting/_rangeFrameLocator.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:49,999 copying build/lib/nPYc/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:50,002 copying build/lib/nPYc/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:50,003 copying build/lib/nPYc/plotting/_plotFeatureRanges.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:50,006 copying build/lib/nPYc/plotting/_multivariatePlotting.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:50,009 copying build/lib/nPYc/plotting/_plotTargetedFeatureDistribution.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:50,011 copying build/lib/nPYc/plotting/_plotSpectralVariance.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:50,013 copying build/lib/nPYc/plotting/_plotVariableScatter.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:50,015 copying build/lib/nPYc/plotting/_correlationSpectroscopy.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:50,017 copying build/lib/nPYc/plotting/_plotNMRcalibration.py -> build/bdist.linux-armv7l/wheel/nPYc/plotting 2024-08-13T16:34:50,021 creating build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,022 copying build/lib/nPYc/utilities/_importBrukerSpectrum.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,025 copying build/lib/nPYc/utilities/generic.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,027 copying build/lib/nPYc/utilities/_fitPeak.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,029 copying build/lib/nPYc/utilities/_errorHandling.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,031 copying build/lib/nPYc/utilities/_npc_sampleledger.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,033 copying build/lib/nPYc/utilities/_massSpectrumBuilder.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,035 copying build/lib/nPYc/utilities/_getMetadataFromWatersRaw.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,037 copying build/lib/nPYc/utilities/_getMetadataFromBrukerNMR.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,045 creating build/bdist.linux-armv7l/wheel/nPYc/utilities/normalisation 2024-08-13T16:34:50,048 copying build/lib/nPYc/utilities/normalisation/_normaliserABC.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities/normalisation 2024-08-13T16:34:50,052 copying build/lib/nPYc/utilities/normalisation/_totalAreaNormaliser.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities/normalisation 2024-08-13T16:34:50,054 copying build/lib/nPYc/utilities/normalisation/_probabilisticQuotientNormaliser.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities/normalisation 2024-08-13T16:34:50,057 copying build/lib/nPYc/utilities/normalisation/__init__.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities/normalisation 2024-08-13T16:34:50,059 copying build/lib/nPYc/utilities/normalisation/_nullNormaliser.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities/normalisation 2024-08-13T16:34:50,061 copying build/lib/nPYc/utilities/_getMetadataFrommzML.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,062 copying build/lib/nPYc/utilities/_checkInRange.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,064 copying build/lib/nPYc/utilities/extractParams.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,067 copying build/lib/nPYc/utilities/_internal.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,072 copying build/lib/nPYc/utilities/_conditionalJoin.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,088 copying build/lib/nPYc/utilities/ms.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,102 copying build/lib/nPYc/utilities/_lineWidth.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,109 copying build/lib/nPYc/utilities/_nmr.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,117 copying build/lib/nPYc/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,125 copying build/lib/nPYc/utilities/_buildSpectrumFromQIfeature.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,135 copying build/lib/nPYc/utilities/_calibratePPMscale.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,149 copying build/lib/nPYc/utilities/_filters.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,161 copying build/lib/nPYc/utilities/_addReferenceRanges.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,170 copying build/lib/nPYc/utilities/_readBrukerXML.py -> build/bdist.linux-armv7l/wheel/nPYc/utilities 2024-08-13T16:34:50,178 creating build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,179 copying build/lib/nPYc/reports/featureID.py -> build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,186 copying build/lib/nPYc/reports/_generateReportTargeted.py -> build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,194 copying build/lib/nPYc/reports/_generateReportMS.py -> build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,203 copying build/lib/nPYc/reports/generateReport.py -> build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,210 copying build/lib/nPYc/reports/multivariateReport.py -> build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,220 copying build/lib/nPYc/reports/_finalReportPeakPantheR.py -> build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,228 copying build/lib/nPYc/reports/_generateSampleReport.py -> build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,230 copying build/lib/nPYc/reports/metadata.py -> build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,232 copying build/lib/nPYc/reports/__init__.py -> build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,233 copying build/lib/nPYc/reports/_generateReportNMR.py -> build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,236 copying build/lib/nPYc/reports/_generateFeatureDistributionReport.py -> build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,237 copying build/lib/nPYc/reports/_generateBasicPCAReport.py -> build/bdist.linux-armv7l/wheel/nPYc/reports 2024-08-13T16:34:50,240 creating build/bdist.linux-armv7l/wheel/nPYc/batchAndROCorrection 2024-08-13T16:34:50,241 copying build/lib/nPYc/batchAndROCorrection/__init__.py -> build/bdist.linux-armv7l/wheel/nPYc/batchAndROCorrection 2024-08-13T16:34:50,242 copying build/lib/nPYc/batchAndROCorrection/_batchAndROCorrection.py -> build/bdist.linux-armv7l/wheel/nPYc/batchAndROCorrection 2024-08-13T16:34:50,245 creating build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns 2024-08-13T16:34:50,246 copying build/lib/nPYc/StudyDesigns/BI-LISA_analyteGroups.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns 2024-08-13T16:34:50,248 copying build/lib/nPYc/StudyDesigns/DilutionSeries.csv -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns 2024-08-13T16:34:50,250 creating build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,251 copying build/lib/nPYc/StudyDesigns/SOP/AminoAcidMS.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,254 copying build/lib/nPYc/StudyDesigns/SOP/BrukerQuant-UR.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,255 copying build/lib/nPYc/StudyDesigns/SOP/GenericMS.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,258 copying build/lib/nPYc/StudyDesigns/SOP/NMR1Djresblood.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,259 copying build/lib/nPYc/StudyDesigns/SOP/Generic.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,261 copying build/lib/nPYc/StudyDesigns/SOP/OxylipinMS.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,264 copying build/lib/nPYc/StudyDesigns/SOP/GenericNMRblood.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,266 copying build/lib/nPYc/StudyDesigns/SOP/TryptophanMS.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,270 copying build/lib/nPYc/StudyDesigns/SOP/BrukerBI-LISA.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,274 copying build/lib/nPYc/StudyDesigns/SOP/GenericNMRurine.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,277 copying build/lib/nPYc/StudyDesigns/SOP/BrukerBI-QUANT-PS.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,279 copying build/lib/nPYc/StudyDesigns/SOP/NMR1Djresurine.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/SOP 2024-08-13T16:34:50,282 copying build/lib/nPYc/StudyDesigns/urine_quant_b_reference_groups.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns 2024-08-13T16:34:50,284 copying build/lib/nPYc/StudyDesigns/BI-LISAref.csv -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns 2024-08-13T16:34:50,289 copying build/lib/nPYc/StudyDesigns/ExactMasses.csv -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns 2024-08-13T16:34:50,291 copying build/lib/nPYc/StudyDesigns/BI-LISA_reference_groups.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns 2024-08-13T16:34:50,293 copying build/lib/nPYc/StudyDesigns/AssayParametersSchema.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns 2024-08-13T16:34:50,295 copying build/lib/nPYc/StudyDesigns/AssayParameters.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns 2024-08-13T16:34:50,297 copying build/lib/nPYc/StudyDesigns/colours.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns 2024-08-13T16:34:50,299 copying build/lib/nPYc/StudyDesigns/Abbreviations.csv -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns 2024-08-13T16:34:50,302 creating build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/ISATABFieldMappings 2024-08-13T16:34:50,302 copying build/lib/nPYc/StudyDesigns/ISATABFieldMappings/MSFields.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/ISATABFieldMappings 2024-08-13T16:34:50,304 copying build/lib/nPYc/StudyDesigns/ISATABFieldMappings/NMRFields.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/ISATABFieldMappings 2024-08-13T16:34:50,306 copying build/lib/nPYc/StudyDesigns/BI-LISA_reference_ranges.json -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns 2024-08-13T16:34:50,308 creating build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/BlankISATAB 2024-08-13T16:34:50,310 creating build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/BlankISATAB/blank-ms 2024-08-13T16:34:50,311 copying build/lib/nPYc/StudyDesigns/BlankISATAB/blank-ms/a_npc-test-study_metabolite_profiling_mass_spectrometry.txt -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/BlankISATAB/blank-ms 2024-08-13T16:34:50,312 copying build/lib/nPYc/StudyDesigns/BlankISATAB/blank-ms/i_Investigation.txt -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/BlankISATAB/blank-ms 2024-08-13T16:34:50,314 copying build/lib/nPYc/StudyDesigns/BlankISATAB/blank-ms/s_NPC-Test-Study.txt -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/BlankISATAB/blank-ms 2024-08-13T16:34:50,316 creating build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/BlankISATAB/blank-nmr 2024-08-13T16:34:50,317 copying build/lib/nPYc/StudyDesigns/BlankISATAB/blank-nmr/a_npc-test-study_metabolite_profiling_NMR_spectroscopy.txt -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/BlankISATAB/blank-nmr 2024-08-13T16:34:50,319 copying build/lib/nPYc/StudyDesigns/BlankISATAB/blank-nmr/i_Investigation.txt -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/BlankISATAB/blank-nmr 2024-08-13T16:34:50,321 copying build/lib/nPYc/StudyDesigns/BlankISATAB/blank-nmr/s_NPC-Test-Study.txt -> build/bdist.linux-armv7l/wheel/nPYc/StudyDesigns/BlankISATAB/blank-nmr 2024-08-13T16:34:50,322 copying build/lib/nPYc/__init__.py -> build/bdist.linux-armv7l/wheel/nPYc 2024-08-13T16:34:50,324 creating build/bdist.linux-armv7l/wheel/nPYc/enumerations 2024-08-13T16:34:50,325 copying build/lib/nPYc/enumerations/_enumerations.py -> build/bdist.linux-armv7l/wheel/nPYc/enumerations 2024-08-13T16:34:50,327 copying build/lib/nPYc/enumerations/__init__.py -> build/bdist.linux-armv7l/wheel/nPYc/enumerations 2024-08-13T16:34:50,330 creating build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,331 copying build/lib/nPYc/Templates/MS_peakPantheR_FinalSummaryReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,334 copying build/lib/nPYc/Templates/Targeted_FeatureSummaryReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,336 copying build/lib/nPYc/Templates/featureDistributionReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,337 copying build/lib/nPYc/Templates/generateReportBIQuantUR.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,339 copying build/lib/nPYc/Templates/Targeted_FinalReportNMR.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,341 copying build/lib/nPYc/Templates/base_generic.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,343 copying build/lib/nPYc/Templates/generateReportBILISA.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,345 copying build/lib/nPYc/Templates/MS_FeatureSummaryReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,347 copying build/lib/nPYc/Templates/ID_request_MS.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,350 copying build/lib/nPYc/Templates/pcaReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,352 copying build/lib/nPYc/Templates/Targeted_MergeLOQReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,355 copying build/lib/nPYc/Templates/MS_BatchCorrectionSummaryReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,359 copying build/lib/nPYc/Templates/sampleReportChunk.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,362 copying build/lib/nPYc/Templates/NPC_MultivariateReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,368 copying build/lib/nPYc/Templates/NMR_QCSummaryReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,373 copying build/lib/nPYc/Templates/MS_FinalSummaryReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,380 copying build/lib/nPYc/Templates/base_QC.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,383 copying build/lib/nPYc/Templates/toolbox_logo.png -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,385 copying build/lib/nPYc/Templates/MS_CorrelationToDilutionReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,387 copying build/lib/nPYc/Templates/NMR_FinalSummaryReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,389 copying build/lib/nPYc/Templates/MS_FeatureSelectionReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,391 copying build/lib/nPYc/Templates/MS_FinalSummaryReport_Abridged.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,393 copying build/lib/nPYc/Templates/generateReportTargeted.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,395 copying build/lib/nPYc/Templates/MS_BatchCorrectionAssessmentReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,396 copying build/lib/nPYc/Templates/Targeted_FinalReportMS.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,398 copying build/lib/nPYc/Templates/npc-main.css -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,401 copying build/lib/nPYc/Templates/generateSampleReport.html -> build/bdist.linux-armv7l/wheel/nPYc/Templates 2024-08-13T16:34:50,403 creating build/bdist.linux-armv7l/wheel/nPYc/objects 2024-08-13T16:34:50,403 copying build/lib/nPYc/objects/_targetedDataset.py -> build/bdist.linux-armv7l/wheel/nPYc/objects 2024-08-13T16:34:50,409 copying build/lib/nPYc/objects/_dataset.py -> build/bdist.linux-armv7l/wheel/nPYc/objects 2024-08-13T16:34:50,413 copying build/lib/nPYc/objects/_msDataset.py -> build/bdist.linux-armv7l/wheel/nPYc/objects 2024-08-13T16:34:50,417 copying build/lib/nPYc/objects/__init__.py -> build/bdist.linux-armv7l/wheel/nPYc/objects 2024-08-13T16:34:50,419 copying build/lib/nPYc/objects/_nmrDataset.py -> build/bdist.linux-armv7l/wheel/nPYc/objects 2024-08-13T16:34:50,422 creating build/bdist.linux-armv7l/wheel/nPYc/multivariate 2024-08-13T16:34:50,422 copying build/lib/nPYc/multivariate/multivariateUtilities.py -> build/bdist.linux-armv7l/wheel/nPYc/multivariate 2024-08-13T16:34:50,425 copying build/lib/nPYc/multivariate/__init__.py -> build/bdist.linux-armv7l/wheel/nPYc/multivariate 2024-08-13T16:34:50,427 copying build/lib/nPYc/multivariate/exploratoryAnalysisPCA.py -> build/bdist.linux-armv7l/wheel/nPYc/multivariate 2024-08-13T16:34:50,429 running install_egg_info 2024-08-13T16:34:50,461 Copying nPYc.egg-info to build/bdist.linux-armv7l/wheel/nPYc-2.0-py3.11.egg-info 2024-08-13T16:34:50,474 running install_scripts 2024-08-13T16:34:50,492 creating build/bdist.linux-armv7l/wheel/nPYc-2.0.dist-info/WHEEL 2024-08-13T16:34:50,496 creating '/tmp/pip-wheel-v3mzx96p/nPYc-2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-08-13T16:34:50,499 adding 'nPYc/__init__.py' 2024-08-13T16:34:50,500 adding 'nPYc/_toolboxPath.py' 2024-08-13T16:34:50,503 adding 'nPYc/StudyDesigns/Abbreviations.csv' 2024-08-13T16:34:50,504 adding 'nPYc/StudyDesigns/AssayParameters.json' 2024-08-13T16:34:50,506 adding 'nPYc/StudyDesigns/AssayParametersSchema.json' 2024-08-13T16:34:50,508 adding 'nPYc/StudyDesigns/BI-LISA_analyteGroups.json' 2024-08-13T16:34:50,509 adding 'nPYc/StudyDesigns/BI-LISA_reference_groups.json' 2024-08-13T16:34:50,511 adding 'nPYc/StudyDesigns/BI-LISA_reference_ranges.json' 2024-08-13T16:34:50,544 adding 'nPYc/StudyDesigns/BI-LISAref.csv' 2024-08-13T16:34:50,546 adding 'nPYc/StudyDesigns/DilutionSeries.csv' 2024-08-13T16:34:50,549 adding 'nPYc/StudyDesigns/ExactMasses.csv' 2024-08-13T16:34:50,551 adding 'nPYc/StudyDesigns/colours.json' 2024-08-13T16:34:50,552 adding 'nPYc/StudyDesigns/urine_quant_b_reference_groups.json' 2024-08-13T16:34:50,555 adding 'nPYc/StudyDesigns/BlankISATAB/blank-ms/a_npc-test-study_metabolite_profiling_mass_spectrometry.txt' 2024-08-13T16:34:50,557 adding 'nPYc/StudyDesigns/BlankISATAB/blank-ms/i_Investigation.txt' 2024-08-13T16:34:50,558 adding 'nPYc/StudyDesigns/BlankISATAB/blank-ms/s_NPC-Test-Study.txt' 2024-08-13T16:34:50,560 adding 'nPYc/StudyDesigns/BlankISATAB/blank-nmr/a_npc-test-study_metabolite_profiling_NMR_spectroscopy.txt' 2024-08-13T16:34:50,562 adding 'nPYc/StudyDesigns/BlankISATAB/blank-nmr/i_Investigation.txt' 2024-08-13T16:34:50,563 adding 'nPYc/StudyDesigns/BlankISATAB/blank-nmr/s_NPC-Test-Study.txt' 2024-08-13T16:34:50,565 adding 'nPYc/StudyDesigns/ISATABFieldMappings/MSFields.json' 2024-08-13T16:34:50,567 adding 'nPYc/StudyDesigns/ISATABFieldMappings/NMRFields.json' 2024-08-13T16:34:50,570 adding 'nPYc/StudyDesigns/SOP/AminoAcidMS.json' 2024-08-13T16:34:50,571 adding 'nPYc/StudyDesigns/SOP/BrukerBI-LISA.json' 2024-08-13T16:34:50,573 adding 'nPYc/StudyDesigns/SOP/BrukerBI-QUANT-PS.json' 2024-08-13T16:34:50,575 adding 'nPYc/StudyDesigns/SOP/BrukerQuant-UR.json' 2024-08-13T16:34:50,576 adding 'nPYc/StudyDesigns/SOP/Generic.json' 2024-08-13T16:34:50,578 adding 'nPYc/StudyDesigns/SOP/GenericMS.json' 2024-08-13T16:34:50,580 adding 'nPYc/StudyDesigns/SOP/GenericNMRblood.json' 2024-08-13T16:34:50,582 adding 'nPYc/StudyDesigns/SOP/GenericNMRurine.json' 2024-08-13T16:34:50,583 adding 'nPYc/StudyDesigns/SOP/NMR1Djresblood.json' 2024-08-13T16:34:50,584 adding 'nPYc/StudyDesigns/SOP/NMR1Djresurine.json' 2024-08-13T16:34:50,586 adding 'nPYc/StudyDesigns/SOP/OxylipinMS.json' 2024-08-13T16:34:50,587 adding 'nPYc/StudyDesigns/SOP/TryptophanMS.json' 2024-08-13T16:34:50,590 adding 'nPYc/Templates/ID_request_MS.html' 2024-08-13T16:34:50,591 adding 'nPYc/Templates/MS_BatchCorrectionAssessmentReport.html' 2024-08-13T16:34:50,592 adding 'nPYc/Templates/MS_BatchCorrectionSummaryReport.html' 2024-08-13T16:34:50,594 adding 'nPYc/Templates/MS_CorrelationToDilutionReport.html' 2024-08-13T16:34:50,595 adding 'nPYc/Templates/MS_FeatureSelectionReport.html' 2024-08-13T16:34:50,596 adding 'nPYc/Templates/MS_FeatureSummaryReport.html' 2024-08-13T16:34:50,598 adding 'nPYc/Templates/MS_FinalSummaryReport.html' 2024-08-13T16:34:50,599 adding 'nPYc/Templates/MS_FinalSummaryReport_Abridged.html' 2024-08-13T16:34:50,601 adding 'nPYc/Templates/MS_peakPantheR_FinalSummaryReport.html' 2024-08-13T16:34:50,602 adding 'nPYc/Templates/NMR_FinalSummaryReport.html' 2024-08-13T16:34:50,604 adding 'nPYc/Templates/NMR_QCSummaryReport.html' 2024-08-13T16:34:50,605 adding 'nPYc/Templates/NPC_MultivariateReport.html' 2024-08-13T16:34:50,607 adding 'nPYc/Templates/Targeted_FeatureSummaryReport.html' 2024-08-13T16:34:50,609 adding 'nPYc/Templates/Targeted_FinalReportMS.html' 2024-08-13T16:34:50,611 adding 'nPYc/Templates/Targeted_FinalReportNMR.html' 2024-08-13T16:34:50,612 adding 'nPYc/Templates/Targeted_MergeLOQReport.html' 2024-08-13T16:34:50,613 adding 'nPYc/Templates/base_QC.html' 2024-08-13T16:34:50,614 adding 'nPYc/Templates/base_generic.html' 2024-08-13T16:34:50,616 adding 'nPYc/Templates/featureDistributionReport.html' 2024-08-13T16:34:50,617 adding 'nPYc/Templates/generateReportBILISA.html' 2024-08-13T16:34:50,618 adding 'nPYc/Templates/generateReportBIQuantUR.html' 2024-08-13T16:34:50,620 adding 'nPYc/Templates/generateReportTargeted.html' 2024-08-13T16:34:50,621 adding 'nPYc/Templates/generateSampleReport.html' 2024-08-13T16:34:50,623 adding 'nPYc/Templates/npc-main.css' 2024-08-13T16:34:50,624 adding 'nPYc/Templates/pcaReport.html' 2024-08-13T16:34:50,625 adding 'nPYc/Templates/sampleReportChunk.html' 2024-08-13T16:34:50,628 adding 'nPYc/Templates/toolbox_logo.png' 2024-08-13T16:34:50,630 adding 'nPYc/batchAndROCorrection/__init__.py' 2024-08-13T16:34:50,632 adding 'nPYc/batchAndROCorrection/_batchAndROCorrection.py' 2024-08-13T16:34:50,634 adding 'nPYc/enumerations/__init__.py' 2024-08-13T16:34:50,636 adding 'nPYc/enumerations/_enumerations.py' 2024-08-13T16:34:50,638 adding 'nPYc/multivariate/__init__.py' 2024-08-13T16:34:50,639 adding 'nPYc/multivariate/exploratoryAnalysisPCA.py' 2024-08-13T16:34:50,640 adding 'nPYc/multivariate/multivariateUtilities.py' 2024-08-13T16:34:50,642 adding 'nPYc/objects/__init__.py' 2024-08-13T16:34:50,651 adding 'nPYc/objects/_dataset.py' 2024-08-13T16:34:50,666 adding 'nPYc/objects/_msDataset.py' 2024-08-13T16:34:50,669 adding 'nPYc/objects/_nmrDataset.py' 2024-08-13T16:34:50,690 adding 'nPYc/objects/_targetedDataset.py' 2024-08-13T16:34:50,693 adding 'nPYc/plotting/__init__.py' 2024-08-13T16:34:50,695 adding 'nPYc/plotting/_correlationSpectroscopy.py' 2024-08-13T16:34:50,696 adding 'nPYc/plotting/_jointplotRSDvCorrelation.py' 2024-08-13T16:34:50,701 adding 'nPYc/plotting/_multivariatePlotting.py' 2024-08-13T16:34:50,704 adding 'nPYc/plotting/_nmrPlotting.py' 2024-08-13T16:34:50,706 adding 'nPYc/plotting/_plotBatchAndROCorrection.py' 2024-08-13T16:34:50,707 adding 'nPYc/plotting/_plotDiscreteLoadings.py' 2024-08-13T16:34:50,708 adding 'nPYc/plotting/_plotFeatureAccuracyPrecision.py' 2024-08-13T16:34:50,710 adding 'nPYc/plotting/_plotFeatureLOQ.py' 2024-08-13T16:34:50,712 adding 'nPYc/plotting/_plotFeatureRanges.py' 2024-08-13T16:34:50,713 adding 'nPYc/plotting/_plotIonMap.py' 2024-08-13T16:34:50,716 adding 'nPYc/plotting/_plotLOQFeatureViolin.py' 2024-08-13T16:34:50,718 adding 'nPYc/plotting/_plotLOQRunOrder.py' 2024-08-13T16:34:50,720 adding 'nPYc/plotting/_plotNMRbaseline.py' 2024-08-13T16:34:50,721 adding 'nPYc/plotting/_plotNMRcalibration.py' 2024-08-13T16:34:50,723 adding 'nPYc/plotting/_plotNMRsolvent.py' 2024-08-13T16:34:50,724 adding 'nPYc/plotting/_plotRSDs.py' 2024-08-13T16:34:50,726 adding 'nPYc/plotting/_plotSpectralVariance.py' 2024-08-13T16:34:50,728 adding 'nPYc/plotting/_plotTIC.py' 2024-08-13T16:34:50,730 adding 'nPYc/plotting/_plotTargeted.py' 2024-08-13T16:34:50,731 adding 'nPYc/plotting/_plotTargetedFeatureDistribution.py' 2024-08-13T16:34:50,733 adding 'nPYc/plotting/_plotVariableScatter.py' 2024-08-13T16:34:50,736 adding 'nPYc/plotting/_plotting.py' 2024-08-13T16:34:50,737 adding 'nPYc/plotting/_rangeFrameLocator.py' 2024-08-13T16:34:50,738 adding 'nPYc/plotting/_violinPlot.py' 2024-08-13T16:34:50,740 adding 'nPYc/reports/__init__.py' 2024-08-13T16:34:50,743 adding 'nPYc/reports/_finalReportPeakPantheR.py' 2024-08-13T16:34:50,744 adding 'nPYc/reports/_generateBasicPCAReport.py' 2024-08-13T16:34:50,746 adding 'nPYc/reports/_generateFeatureDistributionReport.py' 2024-08-13T16:34:50,752 adding 'nPYc/reports/_generateReportMS.py' 2024-08-13T16:34:50,755 adding 'nPYc/reports/_generateReportNMR.py' 2024-08-13T16:34:50,761 adding 'nPYc/reports/_generateReportTargeted.py' 2024-08-13T16:34:50,763 adding 'nPYc/reports/_generateSampleReport.py' 2024-08-13T16:34:50,766 adding 'nPYc/reports/featureID.py' 2024-08-13T16:34:50,768 adding 'nPYc/reports/generateReport.py' 2024-08-13T16:34:50,769 adding 'nPYc/reports/metadata.py' 2024-08-13T16:34:50,773 adding 'nPYc/reports/multivariateReport.py' 2024-08-13T16:34:50,775 adding 'nPYc/utilities/__init__.py' 2024-08-13T16:34:50,777 adding 'nPYc/utilities/_addReferenceRanges.py' 2024-08-13T16:34:50,778 adding 'nPYc/utilities/_buildSpectrumFromQIfeature.py' 2024-08-13T16:34:50,779 adding 'nPYc/utilities/_calibratePPMscale.py' 2024-08-13T16:34:50,781 adding 'nPYc/utilities/_checkInRange.py' 2024-08-13T16:34:50,782 adding 'nPYc/utilities/_conditionalJoin.py' 2024-08-13T16:34:50,787 adding 'nPYc/utilities/_errorHandling.py' 2024-08-13T16:34:50,788 adding 'nPYc/utilities/_filters.py' 2024-08-13T16:34:50,790 adding 'nPYc/utilities/_fitPeak.py' 2024-08-13T16:34:50,791 adding 'nPYc/utilities/_getMetadataFromBrukerNMR.py' 2024-08-13T16:34:50,793 adding 'nPYc/utilities/_getMetadataFromWatersRaw.py' 2024-08-13T16:34:50,795 adding 'nPYc/utilities/_getMetadataFrommzML.py' 2024-08-13T16:34:50,796 adding 'nPYc/utilities/_importBrukerSpectrum.py' 2024-08-13T16:34:50,798 adding 'nPYc/utilities/_internal.py' 2024-08-13T16:34:50,799 adding 'nPYc/utilities/_lineWidth.py' 2024-08-13T16:34:50,800 adding 'nPYc/utilities/_massSpectrumBuilder.py' 2024-08-13T16:34:50,802 adding 'nPYc/utilities/_nmr.py' 2024-08-13T16:34:50,803 adding 'nPYc/utilities/_npc_sampleledger.py' 2024-08-13T16:34:50,804 adding 'nPYc/utilities/_readBrukerXML.py' 2024-08-13T16:34:50,806 adding 'nPYc/utilities/extractParams.py' 2024-08-13T16:34:50,807 adding 'nPYc/utilities/generic.py' 2024-08-13T16:34:50,809 adding 'nPYc/utilities/ms.py' 2024-08-13T16:34:50,810 adding 'nPYc/utilities/normalisation/__init__.py' 2024-08-13T16:34:50,812 adding 'nPYc/utilities/normalisation/_normaliserABC.py' 2024-08-13T16:34:50,818 adding 'nPYc/utilities/normalisation/_nullNormaliser.py' 2024-08-13T16:34:50,820 adding 'nPYc/utilities/normalisation/_probabilisticQuotientNormaliser.py' 2024-08-13T16:34:50,821 adding 'nPYc/utilities/normalisation/_totalAreaNormaliser.py' 2024-08-13T16:34:50,823 adding 'nPYc-2.0.dist-info/LICENSE.md' 2024-08-13T16:34:50,824 adding 'nPYc-2.0.dist-info/METADATA' 2024-08-13T16:34:50,825 adding 'nPYc-2.0.dist-info/WHEEL' 2024-08-13T16:34:50,826 adding 'nPYc-2.0.dist-info/top_level.txt' 2024-08-13T16:34:50,828 adding 'nPYc-2.0.dist-info/RECORD' 2024-08-13T16:34:50,836 removing build/bdist.linux-armv7l/wheel 2024-08-13T16:34:50,995 Building wheel for npyc (setup.py): finished with status 'done' 2024-08-13T16:34:51,002 Created wheel for npyc: filename=nPYc-2.0-py3-none-any.whl size=368104 sha256=aea304d0e7a728293baf4b898be2934c2a8f2a6d3d69dc6c7ea19daa5dacd249 2024-08-13T16:34:51,003 Stored in directory: /tmp/pip-ephem-wheel-cache-2q3c265b/wheels/a8/dd/d9/251102ca071adebeb57da69fd7337ae01b5e2101b1ee61819d 2024-08-13T16:34:51,017 Successfully built npyc 2024-08-13T16:34:51,033 Removed build tracker: '/tmp/pip-build-tracker-nxc3ad78'