2024-08-13T23:03:35,725 Created temporary directory: /tmp/pip-build-tracker-unpeyyx6 2024-08-13T23:03:35,726 Initialized build tracking at /tmp/pip-build-tracker-unpeyyx6 2024-08-13T23:03:35,726 Created build tracker: /tmp/pip-build-tracker-unpeyyx6 2024-08-13T23:03:35,727 Entered build tracker: /tmp/pip-build-tracker-unpeyyx6 2024-08-13T23:03:35,728 Created temporary directory: /tmp/pip-wheel-y9rp9knz 2024-08-13T23:03:35,732 Created temporary directory: /tmp/pip-ephem-wheel-cache-t916jr_h 2024-08-13T23:03:35,762 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-08-13T23:03:35,764 2 location(s) to search for versions of singlem: 2024-08-13T23:03:35,764 * https://pypi.org/simple/singlem/ 2024-08-13T23:03:35,764 * https://www.piwheels.org/simple/singlem/ 2024-08-13T23:03:35,765 Fetching project page and analyzing links: https://pypi.org/simple/singlem/ 2024-08-13T23:03:35,766 Getting page https://pypi.org/simple/singlem/ 2024-08-13T23:03:35,767 Found index url https://pypi.org/simple/ 2024-08-13T23:03:35,865 Fetched page https://pypi.org/simple/singlem/ as application/vnd.pypi.simple.v1+json 2024-08-13T23:03:35,872 Found link https://files.pythonhosted.org/packages/35/55/72780c79146b2ccd465016b28eccbe6c326493f5a8db3c489eda3382fbb1/singlem-0.7.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.7.1 2024-08-13T23:03:35,873 Found link https://files.pythonhosted.org/packages/17/8b/f553c11bbb3e950516589aa26299b85098d0ac78405a4ebacefa023de306/singlem-0.8.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.0 2024-08-13T23:03:35,874 Found link https://files.pythonhosted.org/packages/b6/f9/9538a096be3c2cc820642d87a626e45ce03f55716175025605b2d33f5e39/singlem-0.8.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.1 2024-08-13T23:03:35,874 Found link https://files.pythonhosted.org/packages/ca/c5/95b117cf1ebc381cf922280dd0aaaf9967777c903c8a079330728a278709/singlem-0.8.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.8.2 2024-08-13T23:03:35,875 Found link https://files.pythonhosted.org/packages/9d/8d/156892825f51ea215336c9171ba98ddd3003bc72538232c3e5cc20840b9c/singlem-0.9.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.9.0 2024-08-13T23:03:35,876 Found link https://files.pythonhosted.org/packages/9c/7c/bdc416d19613e03f631006b9e63355480dfd5438007172002652014dccd5/singlem-0.11.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.11.0 2024-08-13T23:03:35,877 Found link https://files.pythonhosted.org/packages/a3/67/58f5f073fa50c02cf0ccbade3bc0823976f29d12545e48a0b2f2c45288f9/singlem-0.12.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.0 2024-08-13T23:03:35,877 Found link https://files.pythonhosted.org/packages/68/8c/8bd9277ff17836d14658186469cb05376569f052f90cb3a82a449ac7eea4/singlem-0.12.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.12.1 2024-08-13T23:03:35,878 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/17/71/31b5c5d9541c9104d713a0eced18a124a696ee81f9f9dddd578e02b4380f/singlem-0.13.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,879 Found link https://files.pythonhosted.org/packages/db/0b/e73e8b154bbca8f6fb81337791f7420b54b128f3682f9b394843c6559bbc/singlem-0.13.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.0 2024-08-13T23:03:35,879 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/9c/c2/59c1904feff0407c2ca5f1ec0ae098f42415c722f36cf01836c400a0e6ec/singlem-0.13.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,880 Found link https://files.pythonhosted.org/packages/54/6a/d718c26f15b38a4b0e999f8246dcfcd5b7237c2298009031ebd18d7e2a7d/singlem-0.13.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.1 2024-08-13T23:03:35,881 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/aa/67/a4cf9b0c9f573201e887a91a98251ad31dace8433b735c7f698a9e94ebc0/singlem-0.13.2-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,881 Found link https://files.pythonhosted.org/packages/2a/bb/75b1c30a8c30835d277ce6cacbd827fde3f094648bf6c5d4fff5d922b2f7/singlem-0.13.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.13.2 2024-08-13T23:03:35,882 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/50/5a/f72ef558f096a3c9706e30c3bd0dab98c42539b6d507b8e8554c4433edda/singlem-0.14.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,883 Found link https://files.pythonhosted.org/packages/7c/7b/ca7227ef1d9151143a723d74b26bca4d18c6d60870348b4a4aee539ad343/singlem-0.14.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.14.0 2024-08-13T23:03:35,883 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/4c/a3/98cd7cfaef694f36655d9c8d193774e7d94fd9e0f6fc9d92f402fc88b898/singlem-0.15.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,884 Found link https://files.pythonhosted.org/packages/b1/7c/e32b071b5a3f79fb69c39f9a172a179a3c5071e5344fc52387b561fbf38e/singlem-0.15.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.0 2024-08-13T23:03:35,884 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/fc/16/ea6f071e069d735d896eec440e65fdeaf88d69123893b1e7198bde08ba5e/singlem-0.15.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,885 Found link https://files.pythonhosted.org/packages/ed/e7/34484f28ce4bb10dc929264cea43d5683c213858b91520243c197eba77b0/singlem-0.15.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.15.1 2024-08-13T23:03:35,885 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/22/91/db397eac675c00346bf5cd791b7bf0e7ce239b22ae55f255af6f35e34d7e/singlem-0.16.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,886 Found link https://files.pythonhosted.org/packages/04/5a/0eb1e0bcf0d3fdeb87d543d86ef1c5cba4e5dedb4165a06f21b84e80f744/singlem-0.16.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.16.0 2024-08-13T23:03:35,887 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/f7/8b/22924e7ea1fdafa961cd2534919ae78fb024516d61e5c3f988bd1a92cd3c/singlem-0.17.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,887 Found link https://files.pythonhosted.org/packages/a6/b9/168d5463ab41e4f0511b7fe868b80d019dcedb5c14b3b04eea91b39ab5e5/singlem-0.17.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.17.0 2024-08-13T23:03:35,888 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/f2/ff/e5fa9cd9e05e0d066f173a6d1f89a54fd749a192f1107bd24807abc20290/singlem-0.18.0-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,889 Found link https://files.pythonhosted.org/packages/47/dd/5bc943ee3849e5e8d5be202fe563beb4e76604310f136c87a6524ee2d6c4/singlem-0.18.0.tar.gz (from https://pypi.org/simple/singlem/), version: 0.18.0 2024-08-13T23:03:35,889 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/db/cf/78616e32c3df6f385cc3db921b1fb2099fee3cd03490fbed44cd3cde10f0/singlem-0.18.1-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,890 Found link https://files.pythonhosted.org/packages/6c/99/ff18fa38032984bc8dd09441ce43c0b1277ef5869ea2b836635d27023e19/singlem-0.18.1.tar.gz (from https://pypi.org/simple/singlem/), version: 0.18.1 2024-08-13T23:03:35,891 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/2d/0c/f0ca152e1d53d4a5fb23591fc717ee74da694ed5f1973fc1191de14d2c0a/singlem-0.18.2-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,891 Found link https://files.pythonhosted.org/packages/7f/d7/c4286a48ae93a74032d2ef6f765b256352dd01ce22263d69a75649dd89bc/singlem-0.18.2.tar.gz (from https://pypi.org/simple/singlem/), version: 0.18.2 2024-08-13T23:03:35,892 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/1c/b2/8219c658a9b4aaea7f2521297944fda1ea3b2c51813219805ffbd6045055/singlem-0.18.3-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,892 Found link https://files.pythonhosted.org/packages/57/90/e0f7565915cbc92b8d9783c759a50ecab2e363285db2702c14897686a047/singlem-0.18.3.tar.gz (from https://pypi.org/simple/singlem/), version: 0.18.3 2024-08-13T23:03:35,893 Skipping link: No binaries permitted for singlem: https://files.pythonhosted.org/packages/84/1a/8a17c9c2a441e8ec94ac79f90d63cb2dfd994594fc9b0ac177dd4d511a78/singlem-1.0.0b8-py3-none-any.whl (from https://pypi.org/simple/singlem/) 2024-08-13T23:03:35,894 Found link https://files.pythonhosted.org/packages/3e/08/4fe229183f8c2c33255bcf7148fa79b6dd1d65453bcb99d37f82600441b7/singlem-1.0.0b8.tar.gz (from https://pypi.org/simple/singlem/), version: 1.0.0b8 2024-08-13T23:03:35,895 Fetching project page and analyzing links: https://www.piwheels.org/simple/singlem/ 2024-08-13T23:03:35,895 Getting page https://www.piwheels.org/simple/singlem/ 2024-08-13T23:03:35,896 Found index url https://www.piwheels.org/simple/ 2024-08-13T23:03:35,943 Fetched page https://www.piwheels.org/simple/singlem/ as text/html 2024-08-13T23:03:35,948 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-1.0.0b8-py3-none-any.whl#sha256=3365626c8cb55d23a5197a42572fbbb259c9dbc65b14a97f8e800c940b9a362c (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,948 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.18.2-py3-none-any.whl#sha256=4b9da20cb3cf4579625a6ce463d4195bf6109091addd7ac2c4e83244c39671b2 (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,949 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.18.1-py3-none-any.whl#sha256=31d4ed37512fc7fc55a8b5b14fa0a274996b8524b4546ce7684c37e1506709ca (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,949 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.18.0-py3-none-any.whl#sha256=1242840cbfb61ba6c0a428bc2b6d5f4023200bd886a871bc4f3071e9265c60a2 (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,950 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.17.0-py3-none-any.whl#sha256=b12f157af3e578d4a2bf5ab66f5f54ee0e66e9c9c611e08eace7e36119563e2a (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,951 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.16.0-py3-none-any.whl#sha256=899b9e72e567babdc8e689ef6c2676d7d7c58fecb2ebed82d413c75d17c4e410 (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,951 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.15.1-py3-none-any.whl#sha256=4cc1d3a1e437383de7a99970d08e9abdd2633314cf3a06760f8822d81533f512 (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,952 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.15.0-py3-none-any.whl#sha256=51ac005a1c09c7004e5639c3045e1313d39f7d8d4d77c417b63c8f4e243cec51 (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,952 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.14.0-py3-none-any.whl#sha256=184ece47180c793b14866826b9436d33ec0fd1d3c5e2cf5bf0c7625520509208 (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,953 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.2-py3-none-any.whl#sha256=0b410717882ab1cf12894ff799a530aaacb1eb2b69ad778355384c3ec5316bbb (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,953 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.1-py3-none-any.whl#sha256=950f2fc4d7e4eee5e75cc2bb2a5b7119aaa39590ee8c5fe9086ae0425a268fa3 (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,954 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.13.0-py3-none-any.whl#sha256=5f5cb853b85d738f19c8d06c769e4c1f5ae107ae7a2489c75185a7eeb3f0a9e6 (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,955 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.12.0-py3-none-any.whl#sha256=044eb417530be9293ed3640ebb56b5a2f8cfb34d2f8dab45e96556494cf0c2d5 (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,955 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.11.0-py3-none-any.whl#sha256=83c2697c65261566314896fee814840e77012597bb29405182cf4a3063711651 (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,956 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.9.0-py3-none-any.whl#sha256=bfb2dc9633dea53293af0244d04cb1bd0e981c01cfe3dce8cc5b7cd4cf9d7eb9 (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,956 Skipping link: No binaries permitted for singlem: https://www.piwheels.org/simple/singlem/singlem-0.8.2-py3-none-any.whl#sha256=9f7f2cf19f5d8b565a8641eed3e9925ee9112647c245999a6f685af7bfa1c001 (from https://www.piwheels.org/simple/singlem/) 2024-08-13T23:03:35,957 Skipping link: not a file: https://www.piwheels.org/simple/singlem/ 2024-08-13T23:03:35,957 Skipping link: not a file: https://pypi.org/simple/singlem/ 2024-08-13T23:03:35,980 Given no hashes to check 1 links for project 'singlem': discarding no candidates 2024-08-13T23:03:36,000 Collecting singlem==0.18.3 2024-08-13T23:03:36,002 Created temporary directory: /tmp/pip-unpack-4hbc0z5m 2024-08-13T23:03:36,098 Downloading singlem-0.18.3.tar.gz (183 kB) 2024-08-13T23:03:36,325 Added singlem==0.18.3 from https://files.pythonhosted.org/packages/57/90/e0f7565915cbc92b8d9783c759a50ecab2e363285db2702c14897686a047/singlem-0.18.3.tar.gz to build tracker '/tmp/pip-build-tracker-unpeyyx6' 2024-08-13T23:03:36,328 Running setup.py (path:/tmp/pip-wheel-y9rp9knz/singlem_967a76f2fe5d4aa7aabb65d9cb1becf6/setup.py) egg_info for package singlem 2024-08-13T23:03:36,329 Created temporary directory: /tmp/pip-pip-egg-info-143l05pk 2024-08-13T23:03:36,330 Preparing metadata (setup.py): started 2024-08-13T23:03:36,331 Running command python setup.py egg_info 2024-08-13T23:03:37,479 running egg_info 2024-08-13T23:03:37,481 creating /tmp/pip-pip-egg-info-143l05pk/singlem.egg-info 2024-08-13T23:03:37,508 writing /tmp/pip-pip-egg-info-143l05pk/singlem.egg-info/PKG-INFO 2024-08-13T23:03:37,511 writing dependency_links to /tmp/pip-pip-egg-info-143l05pk/singlem.egg-info/dependency_links.txt 2024-08-13T23:03:37,513 writing entry points to /tmp/pip-pip-egg-info-143l05pk/singlem.egg-info/entry_points.txt 2024-08-13T23:03:37,514 writing requirements to /tmp/pip-pip-egg-info-143l05pk/singlem.egg-info/requires.txt 2024-08-13T23:03:37,516 writing top-level names to /tmp/pip-pip-egg-info-143l05pk/singlem.egg-info/top_level.txt 2024-08-13T23:03:37,517 writing manifest file '/tmp/pip-pip-egg-info-143l05pk/singlem.egg-info/SOURCES.txt' 2024-08-13T23:03:37,606 reading manifest file '/tmp/pip-pip-egg-info-143l05pk/singlem.egg-info/SOURCES.txt' 2024-08-13T23:03:37,608 reading manifest template 'MANIFEST.in' 2024-08-13T23:03:37,609 warning: no files found matching 'LICENSE' 2024-08-13T23:03:37,610 warning: no previously-included files matching '*' found under directory 'test' 2024-08-13T23:03:37,610 adding license file 'LICENCE.txt' 2024-08-13T23:03:37,613 writing manifest file '/tmp/pip-pip-egg-info-143l05pk/singlem.egg-info/SOURCES.txt' 2024-08-13T23:03:37,730 Preparing metadata (setup.py): finished with status 'done' 2024-08-13T23:03:37,735 Source in /tmp/pip-wheel-y9rp9knz/singlem_967a76f2fe5d4aa7aabb65d9cb1becf6 has version 0.18.3, which satisfies requirement singlem==0.18.3 from https://files.pythonhosted.org/packages/57/90/e0f7565915cbc92b8d9783c759a50ecab2e363285db2702c14897686a047/singlem-0.18.3.tar.gz 2024-08-13T23:03:37,737 Removed singlem==0.18.3 from https://files.pythonhosted.org/packages/57/90/e0f7565915cbc92b8d9783c759a50ecab2e363285db2702c14897686a047/singlem-0.18.3.tar.gz from build tracker '/tmp/pip-build-tracker-unpeyyx6' 2024-08-13T23:03:37,744 Created temporary directory: /tmp/pip-unpack-qejioyon 2024-08-13T23:03:37,745 Created temporary directory: /tmp/pip-unpack-sjcuuxdq 2024-08-13T23:03:37,746 Building wheels for collected packages: singlem 2024-08-13T23:03:37,750 Created temporary directory: /tmp/pip-wheel-xzxxikcj 2024-08-13T23:03:37,751 Building wheel for singlem (setup.py): started 2024-08-13T23:03:37,752 Destination directory: /tmp/pip-wheel-xzxxikcj 2024-08-13T23:03:37,752 Running command python setup.py bdist_wheel 2024-08-13T23:03:38,837 running bdist_wheel 2024-08-13T23:03:38,982 running build 2024-08-13T23:03:38,983 running build_py 2024-08-13T23:03:39,014 creating build 2024-08-13T23:03:39,014 creating build/lib 2024-08-13T23:03:39,015 creating build/lib/singlem 2024-08-13T23:03:39,016 copying singlem/utils.py -> build/lib/singlem 2024-08-13T23:03:39,018 copying singlem/regenerator.py -> build/lib/singlem 2024-08-13T23:03:39,021 copying singlem/singlem_package.py -> build/lib/singlem 2024-08-13T23:03:39,023 copying singlem/appraisal_result.py -> build/lib/singlem 2024-08-13T23:03:39,026 copying singlem/hmm_logo.py -> build/lib/singlem 2024-08-13T23:03:39,028 copying singlem/genome_size.py -> build/lib/singlem 2024-08-13T23:03:39,030 copying singlem/supplement.py -> build/lib/singlem 2024-08-13T23:03:39,033 copying singlem/query_formatters.py -> build/lib/singlem 2024-08-13T23:03:39,035 copying singlem/archive_otu_table.py -> build/lib/singlem 2024-08-13T23:03:39,037 copying singlem/diamond_parser.py -> build/lib/singlem 2024-08-13T23:03:39,039 copying singlem/run_via_os_system.py -> build/lib/singlem 2024-08-13T23:03:39,041 copying singlem/orf_length_checker.py -> build/lib/singlem 2024-08-13T23:03:39,042 copying singlem/pipe_sequence_extractor.py -> build/lib/singlem 2024-08-13T23:03:39,045 copying singlem/genome_fasta_mux.py -> build/lib/singlem 2024-08-13T23:03:39,047 copying singlem/read_fraction.py -> build/lib/singlem 2024-08-13T23:03:39,049 copying singlem/sequence_extractor.py -> build/lib/singlem 2024-08-13T23:03:39,051 copying singlem/trim_package_hmms.py -> build/lib/singlem 2024-08-13T23:03:39,053 copying singlem/otu_table.py -> build/lib/singlem 2024-08-13T23:03:39,056 copying singlem/clusterer.py -> build/lib/singlem 2024-08-13T23:03:39,058 copying singlem/sequence_database.py -> build/lib/singlem 2024-08-13T23:03:39,061 copying singlem/renew.py -> build/lib/singlem 2024-08-13T23:03:39,063 copying singlem/diamond_spkg_searcher.py -> build/lib/singlem 2024-08-13T23:03:39,065 copying singlem/metagenome_otu_finder.py -> build/lib/singlem 2024-08-13T23:03:39,068 copying singlem/package_creator.py -> build/lib/singlem 2024-08-13T23:03:39,070 copying singlem/known_otu_table.py -> build/lib/singlem 2024-08-13T23:03:39,071 copying singlem/__init__.py -> build/lib/singlem 2024-08-13T23:03:39,073 copying singlem/chainsaw.py -> build/lib/singlem 2024-08-13T23:03:39,075 copying singlem/main.py -> build/lib/singlem 2024-08-13T23:03:39,079 copying singlem/ordered_set.py -> build/lib/singlem 2024-08-13T23:03:39,081 copying singlem/graftm_result.py -> build/lib/singlem 2024-08-13T23:03:39,083 copying singlem/taxonomy_bihash.py -> build/lib/singlem 2024-08-13T23:03:39,084 copying singlem/streaming_hmm_search_result.py -> build/lib/singlem 2024-08-13T23:03:39,086 copying singlem/taxonomy.py -> build/lib/singlem 2024-08-13T23:03:39,088 copying singlem/appraiser.py -> build/lib/singlem 2024-08-13T23:03:39,091 copying singlem/placement_parser.py -> build/lib/singlem 2024-08-13T23:03:39,093 copying singlem/checkm2.py -> build/lib/singlem 2024-08-13T23:03:39,095 copying singlem/summariser.py -> build/lib/singlem 2024-08-13T23:03:39,098 copying singlem/sequence_classes.py -> build/lib/singlem 2024-08-13T23:03:39,100 copying singlem/querier.py -> build/lib/singlem 2024-08-13T23:03:39,103 copying singlem/pipe.py -> build/lib/singlem 2024-08-13T23:03:39,106 copying singlem/metapackage_read_name_store.py -> build/lib/singlem 2024-08-13T23:03:39,108 copying singlem/kingfisher_sra.py -> build/lib/singlem 2024-08-13T23:03:39,110 copying singlem/rarefier.py -> build/lib/singlem 2024-08-13T23:03:39,112 copying singlem/dereplicator.py -> build/lib/singlem 2024-08-13T23:03:39,114 copying singlem/strain_summariser.py -> build/lib/singlem 2024-08-13T23:03:39,116 copying singlem/otu_table_entry.py -> build/lib/singlem 2024-08-13T23:03:39,118 copying singlem/otu_table_collection.py -> build/lib/singlem 2024-08-13T23:03:39,121 copying singlem/singlem_database_models.py -> build/lib/singlem 2024-08-13T23:03:39,123 copying singlem/pipe_taxonomy_assigner_by_query.py -> build/lib/singlem 2024-08-13T23:03:39,125 copying singlem/version.py -> build/lib/singlem 2024-08-13T23:03:39,127 copying singlem/condense.py -> build/lib/singlem 2024-08-13T23:03:39,129 copying singlem/metapackage.py -> build/lib/singlem 2024-08-13T23:03:39,133 creating build/lib/singlem/biolib_lite 2024-08-13T23:03:39,133 copying singlem/biolib_lite/execute.py -> build/lib/singlem/biolib_lite 2024-08-13T23:03:39,136 copying singlem/biolib_lite/common.py -> build/lib/singlem/biolib_lite 2024-08-13T23:03:39,137 copying singlem/biolib_lite/newick.py -> build/lib/singlem/biolib_lite 2024-08-13T23:03:39,139 copying singlem/biolib_lite/__init__.py -> build/lib/singlem/biolib_lite 2024-08-13T23:03:39,140 copying singlem/biolib_lite/custom_help_formatter.py -> build/lib/singlem/biolib_lite 2024-08-13T23:03:39,142 copying singlem/biolib_lite/taxonomy.py -> build/lib/singlem/biolib_lite 2024-08-13T23:03:39,145 copying singlem/biolib_lite/exceptions.py -> build/lib/singlem/biolib_lite 2024-08-13T23:03:39,147 copying singlem/biolib_lite/seq_io.py -> build/lib/singlem/biolib_lite 2024-08-13T23:03:39,149 copying singlem/biolib_lite/prodigal_biolib.py -> build/lib/singlem/biolib_lite 2024-08-13T23:03:39,152 copying singlem/biolib_lite/parallel.py -> build/lib/singlem/biolib_lite 2024-08-13T23:03:39,154 copying singlem/biolib_lite/logger.py -> build/lib/singlem/biolib_lite 2024-08-13T23:03:39,156 running egg_info 2024-08-13T23:03:39,182 writing singlem.egg-info/PKG-INFO 2024-08-13T23:03:39,186 writing dependency_links to singlem.egg-info/dependency_links.txt 2024-08-13T23:03:39,187 writing entry points to singlem.egg-info/entry_points.txt 2024-08-13T23:03:39,189 writing requirements to singlem.egg-info/requires.txt 2024-08-13T23:03:39,190 writing top-level names to singlem.egg-info/top_level.txt 2024-08-13T23:03:39,223 reading manifest file 'singlem.egg-info/SOURCES.txt' 2024-08-13T23:03:39,226 reading manifest template 'MANIFEST.in' 2024-08-13T23:03:39,227 warning: no files found matching 'LICENSE' 2024-08-13T23:03:39,228 warning: no previously-included files matching '*' found under directory 'test' 2024-08-13T23:03:39,228 adding license file 'LICENCE.txt' 2024-08-13T23:03:39,232 writing manifest file 'singlem.egg-info/SOURCES.txt' 2024-08-13T23:03:39,265 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-08-13T23:03:39,266 !! 2024-08-13T23:03:39,267 ******************************************************************************** 2024-08-13T23:03:39,267 Please avoid running ``setup.py`` directly. 2024-08-13T23:03:39,268 Instead, use pypa/build, pypa/installer or other 2024-08-13T23:03:39,269 standards-based tools. 2024-08-13T23:03:39,270 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-08-13T23:03:39,270 ******************************************************************************** 2024-08-13T23:03:39,272 !! 2024-08-13T23:03:39,272 self.initialize_options() 2024-08-13T23:03:39,293 installing to build/bdist.linux-armv7l/wheel 2024-08-13T23:03:39,293 running install 2024-08-13T23:03:39,317 running install_lib 2024-08-13T23:03:39,344 creating build/bdist.linux-armv7l 2024-08-13T23:03:39,344 creating build/bdist.linux-armv7l/wheel 2024-08-13T23:03:39,346 creating build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,347 copying build/lib/singlem/utils.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,349 copying build/lib/singlem/regenerator.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,352 copying build/lib/singlem/singlem_package.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,354 copying build/lib/singlem/appraisal_result.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,357 copying build/lib/singlem/hmm_logo.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,359 copying build/lib/singlem/genome_size.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,360 copying build/lib/singlem/supplement.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,363 copying build/lib/singlem/query_formatters.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,365 copying build/lib/singlem/archive_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,367 copying build/lib/singlem/diamond_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,369 copying build/lib/singlem/run_via_os_system.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,371 copying build/lib/singlem/orf_length_checker.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,373 creating build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-08-13T23:03:39,374 copying build/lib/singlem/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-08-13T23:03:39,376 copying build/lib/singlem/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-08-13T23:03:39,379 copying build/lib/singlem/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-08-13T23:03:39,381 copying build/lib/singlem/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-08-13T23:03:39,382 copying build/lib/singlem/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-08-13T23:03:39,384 copying build/lib/singlem/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-08-13T23:03:39,387 copying build/lib/singlem/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-08-13T23:03:39,389 copying build/lib/singlem/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-08-13T23:03:39,391 copying build/lib/singlem/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-08-13T23:03:39,393 copying build/lib/singlem/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-08-13T23:03:39,396 copying build/lib/singlem/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/singlem/biolib_lite 2024-08-13T23:03:39,398 copying build/lib/singlem/pipe_sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,401 copying build/lib/singlem/genome_fasta_mux.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,403 copying build/lib/singlem/read_fraction.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,405 copying build/lib/singlem/sequence_extractor.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,407 copying build/lib/singlem/trim_package_hmms.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,409 copying build/lib/singlem/otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,411 copying build/lib/singlem/clusterer.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,413 copying build/lib/singlem/sequence_database.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,417 copying build/lib/singlem/renew.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,419 copying build/lib/singlem/diamond_spkg_searcher.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,421 copying build/lib/singlem/metagenome_otu_finder.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,423 copying build/lib/singlem/package_creator.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,426 copying build/lib/singlem/known_otu_table.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,427 copying build/lib/singlem/__init__.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,429 copying build/lib/singlem/chainsaw.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,431 copying build/lib/singlem/main.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,435 copying build/lib/singlem/ordered_set.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,437 copying build/lib/singlem/graftm_result.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,438 copying build/lib/singlem/taxonomy_bihash.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,440 copying build/lib/singlem/streaming_hmm_search_result.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,442 copying build/lib/singlem/taxonomy.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,443 copying build/lib/singlem/appraiser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,446 copying build/lib/singlem/placement_parser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,448 copying build/lib/singlem/checkm2.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,450 copying build/lib/singlem/summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,453 copying build/lib/singlem/sequence_classes.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,455 copying build/lib/singlem/querier.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,458 copying build/lib/singlem/pipe.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,461 copying build/lib/singlem/metapackage_read_name_store.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,463 copying build/lib/singlem/kingfisher_sra.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,465 copying build/lib/singlem/rarefier.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,467 copying build/lib/singlem/dereplicator.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,469 copying build/lib/singlem/strain_summariser.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,471 copying build/lib/singlem/otu_table_entry.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,473 copying build/lib/singlem/otu_table_collection.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,475 copying build/lib/singlem/singlem_database_models.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,477 copying build/lib/singlem/pipe_taxonomy_assigner_by_query.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,480 copying build/lib/singlem/version.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,481 copying build/lib/singlem/condense.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,484 copying build/lib/singlem/metapackage.py -> build/bdist.linux-armv7l/wheel/singlem 2024-08-13T23:03:39,487 running install_data 2024-08-13T23:03:39,514 creating build/bdist.linux-armv7l/wheel/singlem-0.18.3.data 2024-08-13T23:03:39,515 creating build/bdist.linux-armv7l/wheel/singlem-0.18.3.data/data 2024-08-13T23:03:39,516 copying README.md -> build/bdist.linux-armv7l/wheel/singlem-0.18.3.data/data/. 2024-08-13T23:03:39,518 copying LICENCE.txt -> build/bdist.linux-armv7l/wheel/singlem-0.18.3.data/data/. 2024-08-13T23:03:39,520 running install_egg_info 2024-08-13T23:03:39,554 Copying singlem.egg-info to build/bdist.linux-armv7l/wheel/singlem-0.18.3-py3.11.egg-info 2024-08-13T23:03:39,565 running install_scripts 2024-08-13T23:03:39,582 creating build/bdist.linux-armv7l/wheel/singlem-0.18.3.dist-info/WHEEL 2024-08-13T23:03:39,585 creating '/tmp/pip-wheel-xzxxikcj/singlem-0.18.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-08-13T23:03:39,588 adding 'singlem/__init__.py' 2024-08-13T23:03:39,590 adding 'singlem/appraisal_result.py' 2024-08-13T23:03:39,593 adding 'singlem/appraiser.py' 2024-08-13T23:03:39,594 adding 'singlem/archive_otu_table.py' 2024-08-13T23:03:39,596 adding 'singlem/chainsaw.py' 2024-08-13T23:03:39,597 adding 'singlem/checkm2.py' 2024-08-13T23:03:39,599 adding 'singlem/clusterer.py' 2024-08-13T23:03:39,605 adding 'singlem/condense.py' 2024-08-13T23:03:39,606 adding 'singlem/dereplicator.py' 2024-08-13T23:03:39,607 adding 'singlem/diamond_parser.py' 2024-08-13T23:03:39,609 adding 'singlem/diamond_spkg_searcher.py' 2024-08-13T23:03:39,610 adding 'singlem/genome_fasta_mux.py' 2024-08-13T23:03:39,612 adding 'singlem/genome_size.py' 2024-08-13T23:03:39,613 adding 'singlem/graftm_result.py' 2024-08-13T23:03:39,614 adding 'singlem/hmm_logo.py' 2024-08-13T23:03:39,616 adding 'singlem/kingfisher_sra.py' 2024-08-13T23:03:39,617 adding 'singlem/known_otu_table.py' 2024-08-13T23:03:39,627 adding 'singlem/main.py' 2024-08-13T23:03:39,630 adding 'singlem/metagenome_otu_finder.py' 2024-08-13T23:03:39,633 adding 'singlem/metapackage.py' 2024-08-13T23:03:39,634 adding 'singlem/metapackage_read_name_store.py' 2024-08-13T23:03:39,636 adding 'singlem/ordered_set.py' 2024-08-13T23:03:39,637 adding 'singlem/orf_length_checker.py' 2024-08-13T23:03:39,639 adding 'singlem/otu_table.py' 2024-08-13T23:03:39,641 adding 'singlem/otu_table_collection.py' 2024-08-13T23:03:39,642 adding 'singlem/otu_table_entry.py' 2024-08-13T23:03:39,644 adding 'singlem/package_creator.py' 2024-08-13T23:03:39,653 adding 'singlem/pipe.py' 2024-08-13T23:03:39,657 adding 'singlem/pipe_sequence_extractor.py' 2024-08-13T23:03:39,659 adding 'singlem/pipe_taxonomy_assigner_by_query.py' 2024-08-13T23:03:39,661 adding 'singlem/placement_parser.py' 2024-08-13T23:03:39,665 adding 'singlem/querier.py' 2024-08-13T23:03:39,666 adding 'singlem/query_formatters.py' 2024-08-13T23:03:39,668 adding 'singlem/rarefier.py' 2024-08-13T23:03:39,670 adding 'singlem/read_fraction.py' 2024-08-13T23:03:39,671 adding 'singlem/regenerator.py' 2024-08-13T23:03:39,673 adding 'singlem/renew.py' 2024-08-13T23:03:39,675 adding 'singlem/run_via_os_system.py' 2024-08-13T23:03:39,676 adding 'singlem/sequence_classes.py' 2024-08-13T23:03:39,681 adding 'singlem/sequence_database.py' 2024-08-13T23:03:39,682 adding 'singlem/sequence_extractor.py' 2024-08-13T23:03:39,684 adding 'singlem/singlem_database_models.py' 2024-08-13T23:03:39,686 adding 'singlem/singlem_package.py' 2024-08-13T23:03:39,688 adding 'singlem/strain_summariser.py' 2024-08-13T23:03:39,689 adding 'singlem/streaming_hmm_search_result.py' 2024-08-13T23:03:39,692 adding 'singlem/summariser.py' 2024-08-13T23:03:39,698 adding 'singlem/supplement.py' 2024-08-13T23:03:39,700 adding 'singlem/taxonomy.py' 2024-08-13T23:03:39,701 adding 'singlem/taxonomy_bihash.py' 2024-08-13T23:03:39,703 adding 'singlem/trim_package_hmms.py' 2024-08-13T23:03:39,704 adding 'singlem/utils.py' 2024-08-13T23:03:39,705 adding 'singlem/version.py' 2024-08-13T23:03:39,707 adding 'singlem/biolib_lite/__init__.py' 2024-08-13T23:03:39,708 adding 'singlem/biolib_lite/common.py' 2024-08-13T23:03:39,710 adding 'singlem/biolib_lite/custom_help_formatter.py' 2024-08-13T23:03:39,711 adding 'singlem/biolib_lite/exceptions.py' 2024-08-13T23:03:39,713 adding 'singlem/biolib_lite/execute.py' 2024-08-13T23:03:39,714 adding 'singlem/biolib_lite/logger.py' 2024-08-13T23:03:39,716 adding 'singlem/biolib_lite/newick.py' 2024-08-13T23:03:39,718 adding 'singlem/biolib_lite/parallel.py' 2024-08-13T23:03:39,721 adding 'singlem/biolib_lite/prodigal_biolib.py' 2024-08-13T23:03:39,722 adding 'singlem/biolib_lite/seq_io.py' 2024-08-13T23:03:39,726 adding 'singlem/biolib_lite/taxonomy.py' 2024-08-13T23:03:39,733 adding 'singlem-0.18.3.data/data/LICENCE.txt' 2024-08-13T23:03:39,734 adding 'singlem-0.18.3.data/data/README.md' 2024-08-13T23:03:39,741 adding 'singlem-0.18.3.dist-info/LICENCE.txt' 2024-08-13T23:03:39,742 adding 'singlem-0.18.3.dist-info/METADATA' 2024-08-13T23:03:39,744 adding 'singlem-0.18.3.dist-info/WHEEL' 2024-08-13T23:03:39,745 adding 'singlem-0.18.3.dist-info/entry_points.txt' 2024-08-13T23:03:39,746 adding 'singlem-0.18.3.dist-info/top_level.txt' 2024-08-13T23:03:39,747 adding 'singlem-0.18.3.dist-info/RECORD' 2024-08-13T23:03:39,751 removing build/bdist.linux-armv7l/wheel 2024-08-13T23:03:39,890 Building wheel for singlem (setup.py): finished with status 'done' 2024-08-13T23:03:39,898 Created wheel for singlem: filename=singlem-0.18.3-py3-none-any.whl size=219651 sha256=1ee9f2c47c0487991cf85d23e679d21ae017ffee68f0e22a557457190733e703 2024-08-13T23:03:39,899 Stored in directory: /tmp/pip-ephem-wheel-cache-t916jr_h/wheels/d4/8a/89/eb4628f5107a6ba28944da067e0e86ed3e78f8531a6fb1eaa9 2024-08-13T23:03:39,912 Successfully built singlem 2024-08-13T23:03:39,921 Removed build tracker: '/tmp/pip-build-tracker-unpeyyx6'