2024-08-19T10:23:19,598 Created temporary directory: /tmp/pip-build-tracker-6f23g93x 2024-08-19T10:23:19,599 Initialized build tracking at /tmp/pip-build-tracker-6f23g93x 2024-08-19T10:23:19,599 Created build tracker: /tmp/pip-build-tracker-6f23g93x 2024-08-19T10:23:19,600 Entered build tracker: /tmp/pip-build-tracker-6f23g93x 2024-08-19T10:23:19,601 Created temporary directory: /tmp/pip-wheel-8wbfm_94 2024-08-19T10:23:19,605 Created temporary directory: /tmp/pip-ephem-wheel-cache-jojpqbrj 2024-08-19T10:23:19,649 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-08-19T10:23:19,652 2 location(s) to search for versions of pyfus-lib: 2024-08-19T10:23:19,652 * https://pypi.org/simple/pyfus-lib/ 2024-08-19T10:23:19,652 * https://www.piwheels.org/simple/pyfus-lib/ 2024-08-19T10:23:19,652 Fetching project page and analyzing links: https://pypi.org/simple/pyfus-lib/ 2024-08-19T10:23:19,653 Getting page https://pypi.org/simple/pyfus-lib/ 2024-08-19T10:23:19,654 Found index url https://pypi.org/simple/ 2024-08-19T10:23:19,792 Fetched page https://pypi.org/simple/pyfus-lib/ as application/vnd.pypi.simple.v1+json 2024-08-19T10:23:19,794 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/7a/7b/5e426ebb52d19e6fdad724e735bf2dd85f120412c5c38760c70a97019859/pyfus_lib-0.1.4-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-08-19T10:23:19,795 Found link https://files.pythonhosted.org/packages/19/75/44e13edf654b1ffdec76dd697030fd65e18f9fe6dbacf7e62933a2380ccc/pyfus_lib-0.1.4.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 0.1.4 2024-08-19T10:23:19,795 Skipping link: No binaries permitted for pyfus-lib: https://files.pythonhosted.org/packages/d3/52/a6afb452d218fe18196807c2d648f2317303b3f79895ab3fba2ccf91d665/pyfus_lib-0.1.5-py3-none-any.whl (from https://pypi.org/simple/pyfus-lib/) 2024-08-19T10:23:19,796 Found link https://files.pythonhosted.org/packages/ae/a0/17e4aadba69af7521a79fe9da5fa89321cf09a56f50a18aa845a237afb83/pyfus_lib-0.1.5.tar.gz (from https://pypi.org/simple/pyfus-lib/), version: 0.1.5 2024-08-19T10:23:19,797 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyfus-lib/ 2024-08-19T10:23:19,797 Getting page https://www.piwheels.org/simple/pyfus-lib/ 2024-08-19T10:23:19,799 Found index url https://www.piwheels.org/simple/ 2024-08-19T10:23:19,956 Fetched page https://www.piwheels.org/simple/pyfus-lib/ as text/html 2024-08-19T10:23:19,957 Skipping link: No binaries permitted for pyfus-lib: https://www.piwheels.org/simple/pyfus-lib/pyfus_lib-0.1.4-py3-none-any.whl#sha256=2984a83dbf3708f0a6f63c5c7fe47a35885eabbf0fd460372100e23b189c9126 (from https://www.piwheels.org/simple/pyfus-lib/) 2024-08-19T10:23:19,958 Skipping link: not a file: https://www.piwheels.org/simple/pyfus-lib/ 2024-08-19T10:23:19,958 Skipping link: not a file: https://pypi.org/simple/pyfus-lib/ 2024-08-19T10:23:19,976 Given no hashes to check 1 links for project 'pyfus-lib': discarding no candidates 2024-08-19T10:23:19,978 Collecting pyfus-lib==0.1.5 2024-08-19T10:23:19,980 Created temporary directory: /tmp/pip-unpack-kxe28ine 2024-08-19T10:23:20,117 Downloading pyfus_lib-0.1.5.tar.gz (248 kB) 2024-08-19T10:23:20,625 Added pyfus-lib==0.1.5 from https://files.pythonhosted.org/packages/ae/a0/17e4aadba69af7521a79fe9da5fa89321cf09a56f50a18aa845a237afb83/pyfus_lib-0.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-6f23g93x' 2024-08-19T10:23:20,627 Running setup.py (path:/tmp/pip-wheel-8wbfm_94/pyfus-lib_31fa77e79dcc422f83c73ddc6a36215a/setup.py) egg_info for package pyfus-lib 2024-08-19T10:23:20,628 Created temporary directory: /tmp/pip-pip-egg-info-_er4wdwa 2024-08-19T10:23:20,629 Preparing metadata (setup.py): started 2024-08-19T10:23:20,630 Running command python setup.py egg_info 2024-08-19T10:23:21,197 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:268: UserWarning: Unknown distribution option: 'test_suite' 2024-08-19T10:23:21,197 warnings.warn(msg) 2024-08-19T10:23:21,738 running egg_info 2024-08-19T10:23:21,739 creating /tmp/pip-pip-egg-info-_er4wdwa/pyfus_lib.egg-info 2024-08-19T10:23:21,766 writing /tmp/pip-pip-egg-info-_er4wdwa/pyfus_lib.egg-info/PKG-INFO 2024-08-19T10:23:21,769 writing dependency_links to /tmp/pip-pip-egg-info-_er4wdwa/pyfus_lib.egg-info/dependency_links.txt 2024-08-19T10:23:21,771 writing requirements to /tmp/pip-pip-egg-info-_er4wdwa/pyfus_lib.egg-info/requires.txt 2024-08-19T10:23:21,772 writing top-level names to /tmp/pip-pip-egg-info-_er4wdwa/pyfus_lib.egg-info/top_level.txt 2024-08-19T10:23:21,773 writing manifest file '/tmp/pip-pip-egg-info-_er4wdwa/pyfus_lib.egg-info/SOURCES.txt' 2024-08-19T10:23:21,862 reading manifest file '/tmp/pip-pip-egg-info-_er4wdwa/pyfus_lib.egg-info/SOURCES.txt' 2024-08-19T10:23:21,864 reading manifest template 'MANIFEST.in' 2024-08-19T10:23:21,873 writing manifest file '/tmp/pip-pip-egg-info-_er4wdwa/pyfus_lib.egg-info/SOURCES.txt' 2024-08-19T10:23:21,987 Preparing metadata (setup.py): finished with status 'done' 2024-08-19T10:23:21,991 Source in /tmp/pip-wheel-8wbfm_94/pyfus-lib_31fa77e79dcc422f83c73ddc6a36215a has version 0.1.5, which satisfies requirement pyfus-lib==0.1.5 from https://files.pythonhosted.org/packages/ae/a0/17e4aadba69af7521a79fe9da5fa89321cf09a56f50a18aa845a237afb83/pyfus_lib-0.1.5.tar.gz 2024-08-19T10:23:21,992 Removed pyfus-lib==0.1.5 from https://files.pythonhosted.org/packages/ae/a0/17e4aadba69af7521a79fe9da5fa89321cf09a56f50a18aa845a237afb83/pyfus_lib-0.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-6f23g93x' 2024-08-19T10:23:21,999 Created temporary directory: /tmp/pip-unpack-_fk7yckp 2024-08-19T10:23:22,000 Created temporary directory: /tmp/pip-unpack-vlavevwi 2024-08-19T10:23:22,000 Building wheels for collected packages: pyfus-lib 2024-08-19T10:23:22,004 Created temporary directory: /tmp/pip-wheel-oo0i2z2e 2024-08-19T10:23:22,004 Building wheel for pyfus-lib (setup.py): started 2024-08-19T10:23:22,006 Destination directory: /tmp/pip-wheel-oo0i2z2e 2024-08-19T10:23:22,006 Running command python setup.py bdist_wheel 2024-08-19T10:23:22,562 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:268: UserWarning: Unknown distribution option: 'test_suite' 2024-08-19T10:23:22,563 warnings.warn(msg) 2024-08-19T10:23:23,069 running bdist_wheel 2024-08-19T10:23:23,210 running build 2024-08-19T10:23:23,211 running build_py 2024-08-19T10:23:23,244 creating build 2024-08-19T10:23:23,244 creating build/lib 2024-08-19T10:23:23,245 creating build/lib/pyfus 2024-08-19T10:23:23,246 copying pyfus/data_loading.py -> build/lib/pyfus 2024-08-19T10:23:23,250 copying pyfus/utils.py -> build/lib/pyfus 2024-08-19T10:23:23,252 copying pyfus/quality_control.py -> build/lib/pyfus 2024-08-19T10:23:23,255 copying pyfus/region_averaging_analysis.py -> build/lib/pyfus 2024-08-19T10:23:23,257 copying pyfus/quantification.py -> build/lib/pyfus 2024-08-19T10:23:23,260 copying pyfus/clustering.py -> build/lib/pyfus 2024-08-19T10:23:23,262 copying pyfus/ccf_v3_atlas_generation.py -> build/lib/pyfus 2024-08-19T10:23:23,264 copying pyfus/registration.py -> build/lib/pyfus 2024-08-19T10:23:23,266 copying pyfus/__init__.py -> build/lib/pyfus 2024-08-19T10:23:23,268 copying pyfus/features_extraction.py -> build/lib/pyfus 2024-08-19T10:23:23,270 copying pyfus/correlation_analysis.py -> build/lib/pyfus 2024-08-19T10:23:23,272 running egg_info 2024-08-19T10:23:23,298 writing pyfus_lib.egg-info/PKG-INFO 2024-08-19T10:23:23,302 writing dependency_links to pyfus_lib.egg-info/dependency_links.txt 2024-08-19T10:23:23,303 writing requirements to pyfus_lib.egg-info/requires.txt 2024-08-19T10:23:23,305 writing top-level names to pyfus_lib.egg-info/top_level.txt 2024-08-19T10:23:23,335 reading manifest file 'pyfus_lib.egg-info/SOURCES.txt' 2024-08-19T10:23:23,338 reading manifest template 'MANIFEST.in' 2024-08-19T10:23:23,347 writing manifest file 'pyfus_lib.egg-info/SOURCES.txt' 2024-08-19T10:23:23,349 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyfus.atlases' is absent from the `packages` configuration. 2024-08-19T10:23:23,350 !! 2024-08-19T10:23:23,351 ******************************************************************************** 2024-08-19T10:23:23,351 ############################ 2024-08-19T10:23:23,352 # Package would be ignored # 2024-08-19T10:23:23,352 ############################ 2024-08-19T10:23:23,353 Python recognizes 'pyfus.atlases' as an importable package[^1], 2024-08-19T10:23:23,353 but it is absent from setuptools' `packages` configuration. 2024-08-19T10:23:23,354 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-19T10:23:23,354 package, please make sure that 'pyfus.atlases' is explicitly added 2024-08-19T10:23:23,355 to the `packages` configuration field. 2024-08-19T10:23:23,356 Alternatively, you can also rely on setuptools' discovery methods 2024-08-19T10:23:23,356 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-19T10:23:23,357 instead of `find_packages(...)`/`find:`). 2024-08-19T10:23:23,357 You can read more about "package discovery" on setuptools documentation page: 2024-08-19T10:23:23,358 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-19T10:23:23,359 If you don't want 'pyfus.atlases' to be distributed and are 2024-08-19T10:23:23,359 already explicitly excluding 'pyfus.atlases' via 2024-08-19T10:23:23,360 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-19T10:23:23,360 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-19T10:23:23,361 combination with a more fine grained `package-data` configuration. 2024-08-19T10:23:23,362 You can read more about "package data files" on setuptools documentation page: 2024-08-19T10:23:23,363 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-19T10:23:23,364 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-19T10:23:23,364 even if it does not contain any `.py` files. 2024-08-19T10:23:23,365 On the other hand, currently there is no concept of package data 2024-08-19T10:23:23,365 directory, all directories are treated like packages. 2024-08-19T10:23:23,366 ******************************************************************************** 2024-08-19T10:23:23,367 !! 2024-08-19T10:23:23,367 check.warn(importable) 2024-08-19T10:23:23,368 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyfus.atlases.__pycache__' is absent from the `packages` configuration. 2024-08-19T10:23:23,368 !! 2024-08-19T10:23:23,369 ******************************************************************************** 2024-08-19T10:23:23,370 ############################ 2024-08-19T10:23:23,370 # Package would be ignored # 2024-08-19T10:23:23,371 ############################ 2024-08-19T10:23:23,371 Python recognizes 'pyfus.atlases.__pycache__' as an importable package[^1], 2024-08-19T10:23:23,372 but it is absent from setuptools' `packages` configuration. 2024-08-19T10:23:23,373 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-19T10:23:23,373 package, please make sure that 'pyfus.atlases.__pycache__' is explicitly added 2024-08-19T10:23:23,374 to the `packages` configuration field. 2024-08-19T10:23:23,375 Alternatively, you can also rely on setuptools' discovery methods 2024-08-19T10:23:23,375 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-19T10:23:23,376 instead of `find_packages(...)`/`find:`). 2024-08-19T10:23:23,377 You can read more about "package discovery" on setuptools documentation page: 2024-08-19T10:23:23,379 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-19T10:23:23,380 If you don't want 'pyfus.atlases.__pycache__' to be distributed and are 2024-08-19T10:23:23,380 already explicitly excluding 'pyfus.atlases.__pycache__' via 2024-08-19T10:23:23,381 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-19T10:23:23,381 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-19T10:23:23,382 combination with a more fine grained `package-data` configuration. 2024-08-19T10:23:23,382 You can read more about "package data files" on setuptools documentation page: 2024-08-19T10:23:23,383 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-19T10:23:23,385 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-19T10:23:23,385 even if it does not contain any `.py` files. 2024-08-19T10:23:23,385 On the other hand, currently there is no concept of package data 2024-08-19T10:23:23,386 directory, all directories are treated like packages. 2024-08-19T10:23:23,386 ******************************************************************************** 2024-08-19T10:23:23,387 !! 2024-08-19T10:23:23,388 check.warn(importable) 2024-08-19T10:23:23,388 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyfus.atlases.atlases_lists' is absent from the `packages` configuration. 2024-08-19T10:23:23,389 !! 2024-08-19T10:23:23,390 ******************************************************************************** 2024-08-19T10:23:23,390 ############################ 2024-08-19T10:23:23,391 # Package would be ignored # 2024-08-19T10:23:23,392 ############################ 2024-08-19T10:23:23,392 Python recognizes 'pyfus.atlases.atlases_lists' as an importable package[^1], 2024-08-19T10:23:23,393 but it is absent from setuptools' `packages` configuration. 2024-08-19T10:23:23,394 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-19T10:23:23,395 package, please make sure that 'pyfus.atlases.atlases_lists' is explicitly added 2024-08-19T10:23:23,395 to the `packages` configuration field. 2024-08-19T10:23:23,396 Alternatively, you can also rely on setuptools' discovery methods 2024-08-19T10:23:23,397 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-19T10:23:23,397 instead of `find_packages(...)`/`find:`). 2024-08-19T10:23:23,399 You can read more about "package discovery" on setuptools documentation page: 2024-08-19T10:23:23,400 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-19T10:23:23,401 If you don't want 'pyfus.atlases.atlases_lists' to be distributed and are 2024-08-19T10:23:23,401 already explicitly excluding 'pyfus.atlases.atlases_lists' via 2024-08-19T10:23:23,402 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-19T10:23:23,402 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-19T10:23:23,403 combination with a more fine grained `package-data` configuration. 2024-08-19T10:23:23,404 You can read more about "package data files" on setuptools documentation page: 2024-08-19T10:23:23,405 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-19T10:23:23,407 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-19T10:23:23,408 even if it does not contain any `.py` files. 2024-08-19T10:23:23,408 On the other hand, currently there is no concept of package data 2024-08-19T10:23:23,409 directory, all directories are treated like packages. 2024-08-19T10:23:23,410 ******************************************************************************** 2024-08-19T10:23:23,411 !! 2024-08-19T10:23:23,411 check.warn(importable) 2024-08-19T10:23:23,412 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyfus.atlases.atlases_lists.__pycache__' is absent from the `packages` configuration. 2024-08-19T10:23:23,412 !! 2024-08-19T10:23:23,413 ******************************************************************************** 2024-08-19T10:23:23,413 ############################ 2024-08-19T10:23:23,414 # Package would be ignored # 2024-08-19T10:23:23,414 ############################ 2024-08-19T10:23:23,415 Python recognizes 'pyfus.atlases.atlases_lists.__pycache__' as an importable package[^1], 2024-08-19T10:23:23,415 but it is absent from setuptools' `packages` configuration. 2024-08-19T10:23:23,416 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-19T10:23:23,417 package, please make sure that 'pyfus.atlases.atlases_lists.__pycache__' is explicitly added 2024-08-19T10:23:23,417 to the `packages` configuration field. 2024-08-19T10:23:23,418 Alternatively, you can also rely on setuptools' discovery methods 2024-08-19T10:23:23,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-19T10:23:23,419 instead of `find_packages(...)`/`find:`). 2024-08-19T10:23:23,420 You can read more about "package discovery" on setuptools documentation page: 2024-08-19T10:23:23,421 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-19T10:23:23,422 If you don't want 'pyfus.atlases.atlases_lists.__pycache__' to be distributed and are 2024-08-19T10:23:23,438 already explicitly excluding 'pyfus.atlases.atlases_lists.__pycache__' via 2024-08-19T10:23:23,448 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-19T10:23:23,449 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-19T10:23:23,451 combination with a more fine grained `package-data` configuration. 2024-08-19T10:23:23,473 You can read more about "package data files" on setuptools documentation page: 2024-08-19T10:23:23,523 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-19T10:23:23,525 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-19T10:23:23,525 even if it does not contain any `.py` files. 2024-08-19T10:23:23,526 On the other hand, currently there is no concept of package data 2024-08-19T10:23:23,526 directory, all directories are treated like packages. 2024-08-19T10:23:23,527 ******************************************************************************** 2024-08-19T10:23:23,528 !! 2024-08-19T10:23:23,529 check.warn(importable) 2024-08-19T10:23:23,529 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyfus.atlases.atlases_npy' is absent from the `packages` configuration. 2024-08-19T10:23:23,530 !! 2024-08-19T10:23:23,531 ******************************************************************************** 2024-08-19T10:23:23,532 ############################ 2024-08-19T10:23:23,532 # Package would be ignored # 2024-08-19T10:23:23,533 ############################ 2024-08-19T10:23:23,533 Python recognizes 'pyfus.atlases.atlases_npy' as an importable package[^1], 2024-08-19T10:23:23,534 but it is absent from setuptools' `packages` configuration. 2024-08-19T10:23:23,535 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-19T10:23:23,536 package, please make sure that 'pyfus.atlases.atlases_npy' is explicitly added 2024-08-19T10:23:23,537 to the `packages` configuration field. 2024-08-19T10:23:23,538 Alternatively, you can also rely on setuptools' discovery methods 2024-08-19T10:23:23,538 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-19T10:23:23,539 instead of `find_packages(...)`/`find:`). 2024-08-19T10:23:23,540 You can read more about "package discovery" on setuptools documentation page: 2024-08-19T10:23:23,541 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-19T10:23:23,542 If you don't want 'pyfus.atlases.atlases_npy' to be distributed and are 2024-08-19T10:23:23,542 already explicitly excluding 'pyfus.atlases.atlases_npy' via 2024-08-19T10:23:23,542 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-19T10:23:23,543 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-19T10:23:23,543 combination with a more fine grained `package-data` configuration. 2024-08-19T10:23:23,544 You can read more about "package data files" on setuptools documentation page: 2024-08-19T10:23:23,545 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-19T10:23:23,546 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-19T10:23:23,547 even if it does not contain any `.py` files. 2024-08-19T10:23:23,548 On the other hand, currently there is no concept of package data 2024-08-19T10:23:23,548 directory, all directories are treated like packages. 2024-08-19T10:23:23,549 ******************************************************************************** 2024-08-19T10:23:23,550 !! 2024-08-19T10:23:23,550 check.warn(importable) 2024-08-19T10:23:23,551 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyfus.atlases.atlases_npy.__pycache__' is absent from the `packages` configuration. 2024-08-19T10:23:23,551 !! 2024-08-19T10:23:23,553 ******************************************************************************** 2024-08-19T10:23:23,553 ############################ 2024-08-19T10:23:23,573 # Package would be ignored # 2024-08-19T10:23:23,595 ############################ 2024-08-19T10:23:23,608 Python recognizes 'pyfus.atlases.atlases_npy.__pycache__' as an importable package[^1], 2024-08-19T10:23:23,608 but it is absent from setuptools' `packages` configuration. 2024-08-19T10:23:23,610 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-19T10:23:23,610 package, please make sure that 'pyfus.atlases.atlases_npy.__pycache__' is explicitly added 2024-08-19T10:23:23,611 to the `packages` configuration field. 2024-08-19T10:23:23,612 Alternatively, you can also rely on setuptools' discovery methods 2024-08-19T10:23:23,613 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-19T10:23:23,613 instead of `find_packages(...)`/`find:`). 2024-08-19T10:23:23,614 You can read more about "package discovery" on setuptools documentation page: 2024-08-19T10:23:23,616 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-19T10:23:23,617 If you don't want 'pyfus.atlases.atlases_npy.__pycache__' to be distributed and are 2024-08-19T10:23:23,618 already explicitly excluding 'pyfus.atlases.atlases_npy.__pycache__' via 2024-08-19T10:23:23,619 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-19T10:23:23,620 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-19T10:23:23,621 combination with a more fine grained `package-data` configuration. 2024-08-19T10:23:23,622 You can read more about "package data files" on setuptools documentation page: 2024-08-19T10:23:23,623 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-19T10:23:23,625 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-19T10:23:23,625 even if it does not contain any `.py` files. 2024-08-19T10:23:23,625 On the other hand, currently there is no concept of package data 2024-08-19T10:23:23,626 directory, all directories are treated like packages. 2024-08-19T10:23:23,626 ******************************************************************************** 2024-08-19T10:23:23,627 !! 2024-08-19T10:23:23,627 check.warn(importable) 2024-08-19T10:23:23,628 creating build/lib/pyfus/atlases 2024-08-19T10:23:23,628 copying pyfus/atlases/__init__.py -> build/lib/pyfus/atlases 2024-08-19T10:23:23,629 creating build/lib/pyfus/atlases/__pycache__ 2024-08-19T10:23:23,629 copying pyfus/atlases/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/__pycache__ 2024-08-19T10:23:23,629 creating build/lib/pyfus/atlases/atlases_lists 2024-08-19T10:23:23,630 copying pyfus/atlases/atlases_lists/__init__.py -> build/lib/pyfus/atlases/atlases_lists 2024-08-19T10:23:23,630 copying pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt -> build/lib/pyfus/atlases/atlases_lists 2024-08-19T10:23:23,631 creating build/lib/pyfus/atlases/atlases_lists/__pycache__ 2024-08-19T10:23:23,631 copying pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/atlases_lists/__pycache__ 2024-08-19T10:23:23,632 creating build/lib/pyfus/atlases/atlases_npy 2024-08-19T10:23:23,632 copying pyfus/atlases/atlases_npy/__init__.py -> build/lib/pyfus/atlases/atlases_npy 2024-08-19T10:23:23,633 copying pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy -> build/lib/pyfus/atlases/atlases_npy 2024-08-19T10:23:23,633 copying pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy -> build/lib/pyfus/atlases/atlases_npy 2024-08-19T10:23:23,634 creating build/lib/pyfus/atlases/atlases_npy/__pycache__ 2024-08-19T10:23:23,634 copying pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc -> build/lib/pyfus/atlases/atlases_npy/__pycache__ 2024-08-19T10:23:23,648 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-08-19T10:23:23,648 !! 2024-08-19T10:23:23,650 ******************************************************************************** 2024-08-19T10:23:23,650 Please avoid running ``setup.py`` directly. 2024-08-19T10:23:23,651 Instead, use pypa/build, pypa/installer or other 2024-08-19T10:23:23,651 standards-based tools. 2024-08-19T10:23:23,653 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-08-19T10:23:23,653 ******************************************************************************** 2024-08-19T10:23:23,654 !! 2024-08-19T10:23:23,655 self.initialize_options() 2024-08-19T10:23:23,675 installing to build/bdist.linux-armv7l/wheel 2024-08-19T10:23:23,676 running install 2024-08-19T10:23:23,701 running install_lib 2024-08-19T10:23:23,728 creating build/bdist.linux-armv7l 2024-08-19T10:23:23,729 creating build/bdist.linux-armv7l/wheel 2024-08-19T10:23:23,731 creating build/bdist.linux-armv7l/wheel/pyfus 2024-08-19T10:23:23,731 copying build/lib/pyfus/data_loading.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-08-19T10:23:23,734 copying build/lib/pyfus/utils.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-08-19T10:23:23,737 copying build/lib/pyfus/quality_control.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-08-19T10:23:23,740 copying build/lib/pyfus/region_averaging_analysis.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-08-19T10:23:23,743 creating build/bdist.linux-armv7l/wheel/pyfus/atlases 2024-08-19T10:23:23,744 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/__pycache__ 2024-08-19T10:23:23,745 copying build/lib/pyfus/atlases/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/__pycache__ 2024-08-19T10:23:23,747 copying build/lib/pyfus/atlases/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases 2024-08-19T10:23:23,749 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_lists 2024-08-19T10:23:23,750 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_lists/__pycache__ 2024-08-19T10:23:23,751 copying build/lib/pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists/__pycache__ 2024-08-19T10:23:23,753 copying build/lib/pyfus/atlases/atlases_lists/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists 2024-08-19T10:23:23,755 copying build/lib/pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_lists 2024-08-19T10:23:23,757 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_npy 2024-08-19T10:23:23,758 copying build/lib/pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-08-19T10:23:23,864 creating build/bdist.linux-armv7l/wheel/pyfus/atlases/atlases_npy/__pycache__ 2024-08-19T10:23:23,865 copying build/lib/pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy/__pycache__ 2024-08-19T10:23:23,867 copying build/lib/pyfus/atlases/atlases_npy/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-08-19T10:23:23,868 copying build/lib/pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy -> build/bdist.linux-armv7l/wheel/./pyfus/atlases/atlases_npy 2024-08-19T10:23:24,018 copying build/lib/pyfus/quantification.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-08-19T10:23:24,021 copying build/lib/pyfus/clustering.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-08-19T10:23:24,024 copying build/lib/pyfus/ccf_v3_atlas_generation.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-08-19T10:23:24,026 copying build/lib/pyfus/registration.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-08-19T10:23:24,029 copying build/lib/pyfus/__init__.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-08-19T10:23:24,031 copying build/lib/pyfus/features_extraction.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-08-19T10:23:24,033 copying build/lib/pyfus/correlation_analysis.py -> build/bdist.linux-armv7l/wheel/./pyfus 2024-08-19T10:23:24,035 running install_egg_info 2024-08-19T10:23:24,068 Copying pyfus_lib.egg-info to build/bdist.linux-armv7l/wheel/./pyfus_lib-0.1.5-py3.11.egg-info 2024-08-19T10:23:24,077 running install_scripts 2024-08-19T10:23:24,091 creating build/bdist.linux-armv7l/wheel/pyfus_lib-0.1.5.dist-info/WHEEL 2024-08-19T10:23:24,094 creating '/tmp/pip-wheel-oo0i2z2e/pyfus_lib-0.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-08-19T10:23:24,096 adding 'pyfus/__init__.py' 2024-08-19T10:23:24,098 adding 'pyfus/ccf_v3_atlas_generation.py' 2024-08-19T10:23:24,101 adding 'pyfus/clustering.py' 2024-08-19T10:23:24,103 adding 'pyfus/correlation_analysis.py' 2024-08-19T10:23:24,107 adding 'pyfus/data_loading.py' 2024-08-19T10:23:24,109 adding 'pyfus/features_extraction.py' 2024-08-19T10:23:24,111 adding 'pyfus/quality_control.py' 2024-08-19T10:23:24,113 adding 'pyfus/quantification.py' 2024-08-19T10:23:24,116 adding 'pyfus/region_averaging_analysis.py' 2024-08-19T10:23:24,118 adding 'pyfus/registration.py' 2024-08-19T10:23:24,121 adding 'pyfus/utils.py' 2024-08-19T10:23:24,122 adding 'pyfus/atlases/__init__.py' 2024-08-19T10:23:24,124 adding 'pyfus/atlases/__pycache__/__init__.cpython-39.pyc' 2024-08-19T10:23:24,126 adding 'pyfus/atlases/atlases_lists/__init__.py' 2024-08-19T10:23:24,127 adding 'pyfus/atlases/atlases_lists/regions_ccf_v3_100_nolayersnoparts.txt' 2024-08-19T10:23:24,129 adding 'pyfus/atlases/atlases_lists/__pycache__/__init__.cpython-39.pyc' 2024-08-19T10:23:24,131 adding 'pyfus/atlases/atlases_npy/__init__.py' 2024-08-19T10:23:24,337 adding 'pyfus/atlases/atlases_npy/atlas_ccf_v3_100_contours.npy' 2024-08-19T10:23:24,639 adding 'pyfus/atlases/atlases_npy/atlas_ccf_v3_100_nolayersnoparts.npy' 2024-08-19T10:23:24,670 adding 'pyfus/atlases/atlases_npy/__pycache__/__init__.cpython-39.pyc' 2024-08-19T10:23:24,672 adding 'pyfus_lib-0.1.5.dist-info/METADATA' 2024-08-19T10:23:24,673 adding 'pyfus_lib-0.1.5.dist-info/WHEEL' 2024-08-19T10:23:24,674 adding 'pyfus_lib-0.1.5.dist-info/top_level.txt' 2024-08-19T10:23:24,675 adding 'pyfus_lib-0.1.5.dist-info/RECORD' 2024-08-19T10:23:24,721 removing build/bdist.linux-armv7l/wheel 2024-08-19T10:23:24,858 Building wheel for pyfus-lib (setup.py): finished with status 'done' 2024-08-19T10:23:24,863 Created wheel for pyfus-lib: filename=pyfus_lib-0.1.5-py3-none-any.whl size=270896 sha256=ed070f1a51d3fd23c542b61c6a6c2cb863ebf9d11a2f15ebc3ab7c300cf882e7 2024-08-19T10:23:24,864 Stored in directory: /tmp/pip-ephem-wheel-cache-jojpqbrj/wheels/3a/8e/69/71d102604be2979486d1934186b5132a5f00778c1d74ece9cd 2024-08-19T10:23:24,874 Successfully built pyfus-lib 2024-08-19T10:23:24,883 Removed build tracker: '/tmp/pip-build-tracker-6f23g93x'