2024-08-20T03:26:46,961 Created temporary directory: /tmp/pip-build-tracker-80eaft1z 2024-08-20T03:26:46,962 Initialized build tracking at /tmp/pip-build-tracker-80eaft1z 2024-08-20T03:26:46,962 Created build tracker: /tmp/pip-build-tracker-80eaft1z 2024-08-20T03:26:46,963 Entered build tracker: /tmp/pip-build-tracker-80eaft1z 2024-08-20T03:26:46,963 Created temporary directory: /tmp/pip-wheel-ikslwced 2024-08-20T03:26:46,967 Created temporary directory: /tmp/pip-ephem-wheel-cache-l_gabn8f 2024-08-20T03:26:47,011 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-08-20T03:26:47,014 2 location(s) to search for versions of metawibele: 2024-08-20T03:26:47,014 * https://pypi.org/simple/metawibele/ 2024-08-20T03:26:47,014 * https://www.piwheels.org/simple/metawibele/ 2024-08-20T03:26:47,015 Fetching project page and analyzing links: https://pypi.org/simple/metawibele/ 2024-08-20T03:26:47,015 Getting page https://pypi.org/simple/metawibele/ 2024-08-20T03:26:47,017 Found index url https://pypi.org/simple/ 2024-08-20T03:26:47,229 Fetched page https://pypi.org/simple/metawibele/ as application/vnd.pypi.simple.v1+json 2024-08-20T03:26:47,233 Found link https://files.pythonhosted.org/packages/63/dd/f7fdaebfa37a66521ba36f5cba08d441ef0517891897cbaedd4dc65c23c5/metawibele-0.3.5.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.3.5 2024-08-20T03:26:47,234 Found link https://files.pythonhosted.org/packages/c8/13/b19f1456a883f66cbe84a9994809a7b474c95920e502ab105b350d4a0d76/metawibele-0.3.6.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.3.6 2024-08-20T03:26:47,234 Found link https://files.pythonhosted.org/packages/7c/19/af84f2863d296edd894ff917a516fabb124e1921b4ca6d5bc9fa0fffb969/metawibele-0.3.7.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.3.7 2024-08-20T03:26:47,235 Found link https://files.pythonhosted.org/packages/c4/35/1d22d02f5576d1aa6f5e8c82ad8ff231d9e1364c56e10554cff9dab80dc0/metawibele-0.3.8.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.3.8 2024-08-20T03:26:47,236 Found link https://files.pythonhosted.org/packages/18/0d/c428068b3d096abb30df35c000895ae8738330312be3155e98c22b699b5c/metawibele-0.3.8.1.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.3.8.1 2024-08-20T03:26:47,236 Skipping link: No binaries permitted for metawibele: https://files.pythonhosted.org/packages/ab/ce/00f6b75e334842a289899dab3b4f82f76617682dc84dcc369968f01ce1d3/metawibele-0.4.2-py3-none-any.whl (from https://pypi.org/simple/metawibele/) 2024-08-20T03:26:47,237 Found link https://files.pythonhosted.org/packages/08/0f/c88b89605f54653cb844b33a11db8f28062784f4c6fb239f6f453160c6e1/metawibele-0.4.2.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.4.2 2024-08-20T03:26:47,238 Skipping link: No binaries permitted for metawibele: https://files.pythonhosted.org/packages/90/ab/12be30a49002f83196d21e5c4bdce8b4225174dc35c61292443ebd5214c8/metawibele-0.4.4-py3-none-any.whl (from https://pypi.org/simple/metawibele/) 2024-08-20T03:26:47,238 Found link https://files.pythonhosted.org/packages/ec/b5/1d91e306ea9b2cce23ecfb0ab29492bce93756858f3004e60483fa44878e/metawibele-0.4.4.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.4.4 2024-08-20T03:26:47,239 Found link https://files.pythonhosted.org/packages/83/b0/18a6cced507457a008ccedbec22807ce62887da2581ad8403bdd5079a484/metawibele-0.4.5.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.4.5 2024-08-20T03:26:47,240 Found link https://files.pythonhosted.org/packages/5f/f5/aac1f006fc6d06d2cceef10c7aede2ba6828bb96ee60bceb38a84e10e2de/metawibele-0.4.6.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.4.6 2024-08-20T03:26:47,240 Skipping link: No binaries permitted for metawibele: https://files.pythonhosted.org/packages/8e/44/f33130ae796e4a664c2197062f4e7fda577891048222495d9dad2a78cafa/metawibele-0.4.7-py3-none-any.whl (from https://pypi.org/simple/metawibele/) 2024-08-20T03:26:47,241 Found link https://files.pythonhosted.org/packages/0b/f5/b7548bebec150d5ed1c37c57843f51f3639bee26f52ae1f2d34b8ed3a385/metawibele-0.4.7.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.4.7 2024-08-20T03:26:47,242 Skipping link: No binaries permitted for metawibele: https://files.pythonhosted.org/packages/04/ff/7da514890df387c9504fda5b7ac487ca270a109fcf6a6f77118d9114b1da/metawibele-0.4.8-py3-none-any.whl (from https://pypi.org/simple/metawibele/) 2024-08-20T03:26:47,242 Found link https://files.pythonhosted.org/packages/25/80/3265db8d3abb788b8e72b6d06a28c2fdc7381c7425e93bcc1a19764e82da/metawibele-0.4.8.tar.gz (from https://pypi.org/simple/metawibele/), version: 0.4.8 2024-08-20T03:26:47,243 Fetching project page and analyzing links: https://www.piwheels.org/simple/metawibele/ 2024-08-20T03:26:47,244 Getting page https://www.piwheels.org/simple/metawibele/ 2024-08-20T03:26:47,245 Found index url https://www.piwheels.org/simple/ 2024-08-20T03:26:47,411 Fetched page https://www.piwheels.org/simple/metawibele/ as text/html 2024-08-20T03:26:47,414 Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.4.7-py3-none-any.whl#sha256=f054dfb994190969f26dad16f7429125b7a4b3a54bd1ff377ceb772bc5d98f8f (from https://www.piwheels.org/simple/metawibele/) 2024-08-20T03:26:47,415 Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.4.6-py3-none-any.whl#sha256=1b853ed409b64c768283a8f5bd89542b801903c13dc7a2ff58987f55290fbb96 (from https://www.piwheels.org/simple/metawibele/) 2024-08-20T03:26:47,415 Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.4.5-py3-none-any.whl#sha256=10f643bf273369d90945c26493c25e40502703122fa41c0085b8b1e465918e03 (from https://www.piwheels.org/simple/metawibele/) 2024-08-20T03:26:47,416 Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.4.4-py3-none-any.whl#sha256=5885c288c7e5e51195aa1a8047d469baf52a37367f9fb2e8ce96c93d0d678ddd (from https://www.piwheels.org/simple/metawibele/) 2024-08-20T03:26:47,416 Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.4.2-py3-none-any.whl#sha256=d4a783aa655cb02ed40fe46ee54ced29e34fe8b5fe7e61339dfaf8174cd6153b (from https://www.piwheels.org/simple/metawibele/) 2024-08-20T03:26:47,417 Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.3.8.1-py3-none-any.whl#sha256=3aec339ab17bf253203dd089f09472a4097c2eef98937a16ded9023b196f757c (from https://www.piwheels.org/simple/metawibele/) 2024-08-20T03:26:47,418 Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.3.8-py3-none-any.whl#sha256=24bd645d52d57f0b4c26fbb00aef3c88337c65a659c6446727dfbe72fc6447ac (from https://www.piwheels.org/simple/metawibele/) 2024-08-20T03:26:47,418 Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.3.7-py3-none-any.whl#sha256=b56669f31a78a05ed5401ac62e468a48e63ecc63dc4931cf2a55c3b6987a50ad (from https://www.piwheels.org/simple/metawibele/) 2024-08-20T03:26:47,419 Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.3.6-py3-none-any.whl#sha256=03b55d9f46bd54f37123113aea5c00299a9ed72cc564bd0638ffd79634f31927 (from https://www.piwheels.org/simple/metawibele/) 2024-08-20T03:26:47,419 Skipping link: No binaries permitted for metawibele: https://www.piwheels.org/simple/metawibele/metawibele-0.3.5-py3-none-any.whl#sha256=095d16bf0df2c8f7e8bc1a2f938b4ecc0f3a0fa8cf1b45726e57058fec015503 (from https://www.piwheels.org/simple/metawibele/) 2024-08-20T03:26:47,420 Skipping link: not a file: https://www.piwheels.org/simple/metawibele/ 2024-08-20T03:26:47,420 Skipping link: not a file: https://pypi.org/simple/metawibele/ 2024-08-20T03:26:47,439 Given no hashes to check 1 links for project 'metawibele': discarding no candidates 2024-08-20T03:26:47,441 Collecting metawibele==0.4.8 2024-08-20T03:26:47,443 Created temporary directory: /tmp/pip-unpack-_d4pz794 2024-08-20T03:26:47,908 Downloading metawibele-0.4.8.tar.gz (89.5 MB) 2024-08-20T03:27:05,739 Added metawibele==0.4.8 from https://files.pythonhosted.org/packages/25/80/3265db8d3abb788b8e72b6d06a28c2fdc7381c7425e93bcc1a19764e82da/metawibele-0.4.8.tar.gz to build tracker '/tmp/pip-build-tracker-80eaft1z' 2024-08-20T03:27:05,741 Running setup.py (path:/tmp/pip-wheel-ikslwced/metawibele_df7a7820f9054a898becd42864d60a4f/setup.py) egg_info for package metawibele 2024-08-20T03:27:05,742 Created temporary directory: /tmp/pip-pip-egg-info-ovebrd4l 2024-08-20T03:27:05,742 Preparing metadata (setup.py): started 2024-08-20T03:27:05,743 Running command python setup.py egg_info 2024-08-20T03:27:06,833 running egg_info 2024-08-20T03:27:06,834 creating /tmp/pip-pip-egg-info-ovebrd4l/metawibele.egg-info 2024-08-20T03:27:06,863 writing /tmp/pip-pip-egg-info-ovebrd4l/metawibele.egg-info/PKG-INFO 2024-08-20T03:27:06,867 writing dependency_links to /tmp/pip-pip-egg-info-ovebrd4l/metawibele.egg-info/dependency_links.txt 2024-08-20T03:27:06,871 writing entry points to /tmp/pip-pip-egg-info-ovebrd4l/metawibele.egg-info/entry_points.txt 2024-08-20T03:27:06,874 writing top-level names to /tmp/pip-pip-egg-info-ovebrd4l/metawibele.egg-info/top_level.txt 2024-08-20T03:27:06,875 writing manifest file '/tmp/pip-pip-egg-info-ovebrd4l/metawibele.egg-info/SOURCES.txt' 2024-08-20T03:27:07,011 reading manifest file '/tmp/pip-pip-egg-info-ovebrd4l/metawibele.egg-info/SOURCES.txt' 2024-08-20T03:27:07,013 reading manifest template 'MANIFEST.in' 2024-08-20T03:27:07,014 warning: no files found matching 'readme.md' 2024-08-20T03:27:07,032 adding license file 'LICENSE' 2024-08-20T03:27:07,038 writing manifest file '/tmp/pip-pip-egg-info-ovebrd4l/metawibele.egg-info/SOURCES.txt' 2024-08-20T03:27:07,151 Preparing metadata (setup.py): finished with status 'done' 2024-08-20T03:27:07,154 Source in /tmp/pip-wheel-ikslwced/metawibele_df7a7820f9054a898becd42864d60a4f has version 0.4.8, which satisfies requirement metawibele==0.4.8 from https://files.pythonhosted.org/packages/25/80/3265db8d3abb788b8e72b6d06a28c2fdc7381c7425e93bcc1a19764e82da/metawibele-0.4.8.tar.gz 2024-08-20T03:27:07,156 Removed metawibele==0.4.8 from https://files.pythonhosted.org/packages/25/80/3265db8d3abb788b8e72b6d06a28c2fdc7381c7425e93bcc1a19764e82da/metawibele-0.4.8.tar.gz from build tracker '/tmp/pip-build-tracker-80eaft1z' 2024-08-20T03:27:07,160 Created temporary directory: /tmp/pip-unpack-mhpb3sfu 2024-08-20T03:27:07,161 Created temporary directory: /tmp/pip-unpack-749o594l 2024-08-20T03:27:07,162 Building wheels for collected packages: metawibele 2024-08-20T03:27:07,166 Created temporary directory: /tmp/pip-wheel-5xy0bnnr 2024-08-20T03:27:07,167 Building wheel for metawibele (setup.py): started 2024-08-20T03:27:07,168 Destination directory: /tmp/pip-wheel-5xy0bnnr 2024-08-20T03:27:07,169 Running command python setup.py bdist_wheel 2024-08-20T03:27:08,229 running bdist_wheel 2024-08-20T03:27:08,376 running build 2024-08-20T03:27:08,377 running build_py 2024-08-20T03:27:08,410 creating build 2024-08-20T03:27:08,410 creating build/lib 2024-08-20T03:27:08,411 creating build/lib/metawibele 2024-08-20T03:27:08,413 copying metawibele/check.py -> build/lib/metawibele 2024-08-20T03:27:08,415 copying metawibele/__init__.py -> build/lib/metawibele 2024-08-20T03:27:08,416 copying metawibele/config.py -> build/lib/metawibele 2024-08-20T03:27:08,419 copying metawibele/utilities.py -> build/lib/metawibele 2024-08-20T03:27:08,421 copying metawibele/metawibele.py -> build/lib/metawibele 2024-08-20T03:27:08,424 creating build/lib/metawibele/common 2024-08-20T03:27:08,425 copying metawibele/common/extract_abundance_sample_subset.py -> build/lib/metawibele/common 2024-08-20T03:27:08,427 copying metawibele/common/__init__.py -> build/lib/metawibele/common 2024-08-20T03:27:08,429 copying metawibele/common/filter_clusters.py -> build/lib/metawibele/common 2024-08-20T03:27:08,431 copying metawibele/common/abundance_smoothing.py -> build/lib/metawibele/common 2024-08-20T03:27:08,433 copying metawibele/common/prepare_uniref_annotation.py -> build/lib/metawibele/common 2024-08-20T03:27:08,435 copying metawibele/common/transpose.py -> build/lib/metawibele/common 2024-08-20T03:27:08,437 copying metawibele/common/split_fasta_file.py -> build/lib/metawibele/common 2024-08-20T03:27:08,439 copying metawibele/common/check_install.py -> build/lib/metawibele/common 2024-08-20T03:27:08,441 copying metawibele/common/prepare_uniprot_taxonomy.py -> build/lib/metawibele/common 2024-08-20T03:27:08,443 copying metawibele/common/download_config_file.py -> build/lib/metawibele/common 2024-08-20T03:27:08,445 copying metawibele/common/utils.py -> build/lib/metawibele/common 2024-08-20T03:27:08,447 copying metawibele/common/extract_uniprot_pfam.py -> build/lib/metawibele/common 2024-08-20T03:27:08,449 copying metawibele/common/combine_abundance_annotation.py -> build/lib/metawibele/common 2024-08-20T03:27:08,451 copying metawibele/common/abundance_RPK.py -> build/lib/metawibele/common 2024-08-20T03:27:08,453 copying metawibele/common/download_database.py -> build/lib/metawibele/common 2024-08-20T03:27:08,455 copying metawibele/common/prepare_domain_databases.py -> build/lib/metawibele/common 2024-08-20T03:27:08,457 copying metawibele/common/abundance_filtering.py -> build/lib/metawibele/common 2024-08-20T03:27:08,459 copying metawibele/common/prepare_uniprot_annotation.py -> build/lib/metawibele/common 2024-08-20T03:27:08,461 copying metawibele/common/extract_abundance_feature_subset.py -> build/lib/metawibele/common 2024-08-20T03:27:08,463 copying metawibele/common/filter_prevalence.py -> build/lib/metawibele/common 2024-08-20T03:27:08,465 copying metawibele/common/join_family_abundance.py -> build/lib/metawibele/common 2024-08-20T03:27:08,467 copying metawibele/common/abundance_normalization.py -> build/lib/metawibele/common 2024-08-20T03:27:08,469 copying metawibele/common/split_family_abundance.py -> build/lib/metawibele/common 2024-08-20T03:27:08,471 creating build/lib/metawibele/prioritize 2024-08-20T03:27:08,472 copying metawibele/prioritize/__init__.py -> build/lib/metawibele/prioritize 2024-08-20T03:27:08,474 copying metawibele/prioritize/filter_prioritization.py -> build/lib/metawibele/prioritize 2024-08-20T03:27:08,476 copying metawibele/prioritize/finalize_prioritization.py -> build/lib/metawibele/prioritize 2024-08-20T03:27:08,478 copying metawibele/prioritize/quantify_prioritization.py -> build/lib/metawibele/prioritize 2024-08-20T03:27:08,482 creating build/lib/metawibele/characterize 2024-08-20T03:27:08,483 copying metawibele/characterize/mspminer_msp_uniref_annotation.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,485 copying metawibele/characterize/ddi_DOMINE_ann.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,487 copying metawibele/characterize/finalize_annotation.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,489 copying metawibele/characterize/mspminer_msp_taxonomy_annotation.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,492 copying metawibele/characterize/__init__.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,493 copying metawibele/characterize/summary_protein_uniref_annotation.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,496 copying metawibele/characterize/maaslin2_annotator.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,498 copying metawibele/characterize/interproscan_pfam_protein_family.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,500 copying metawibele/characterize/uniref_annotator_stat.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,502 copying metawibele/characterize/interproscan_phobius_protein_family.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,505 copying metawibele/characterize/abundance_annotator.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,507 copying metawibele/characterize/summary_all_annotation.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,509 copying metawibele/characterize/interproscan_protein.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,511 copying metawibele/characterize/denovo_TM_SP.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,513 copying metawibele/characterize/interproscan_tmhmm_protein_family.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,515 copying metawibele/characterize/psortb_protein.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,517 copying metawibele/characterize/sum_to_protein_family_abundance.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,519 copying metawibele/characterize/msp_protein_family.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,521 copying metawibele/characterize/ddi_DOMINE_ExpAtlas.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,524 copying metawibele/characterize/uniref_protein_family.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,526 copying metawibele/characterize/utils.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,528 copying metawibele/characterize/interproscan_signalp_protein_family.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,530 copying metawibele/characterize/mspminer_protein.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,533 copying metawibele/characterize/uniref_annotator.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,534 copying metawibele/characterize/pfam2go.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,537 copying metawibele/characterize/maaslin2_collection.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,539 copying metawibele/characterize/mspminer_msp.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,541 copying metawibele/characterize/ddi_DOMINE_protein.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,543 copying metawibele/characterize/uniref_protein.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,545 copying metawibele/characterize/interproscan_annotator.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,547 copying metawibele/characterize/summary_protein_family_uniref_annotation.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,549 copying metawibele/characterize/metadata_format.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,551 copying metawibele/characterize/psortb_protein_family.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,553 copying metawibele/characterize/mspminer_protein_family_taxonomy.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,556 copying metawibele/characterize/ddi_DOMINE_SIFTS.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,558 copying metawibele/characterize/psortb_annotator.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,560 copying metawibele/characterize/maaslin2.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,562 copying metawibele/characterize/summary_function_annotation.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,565 copying metawibele/characterize/interproscan_protein_family.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,567 copying metawibele/characterize/maaslin2_summary.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,569 copying metawibele/characterize/ddi_DOMINE_protein_family.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,572 copying metawibele/characterize/mspminer_protein_family.py -> build/lib/metawibele/characterize 2024-08-20T03:27:08,575 creating build/lib/metawibele/tools 2024-08-20T03:27:08,576 copying metawibele/tools/__init__.py -> build/lib/metawibele/tools 2024-08-20T03:27:08,577 copying metawibele/tools/gene_catalog_abundance.py -> build/lib/metawibele/tools 2024-08-20T03:27:08,580 copying metawibele/tools/extract_cluster_CD_hit.py -> build/lib/metawibele/tools 2024-08-20T03:27:08,582 copying metawibele/tools/gene_abundance_indexRef.py -> build/lib/metawibele/tools 2024-08-20T03:27:08,584 copying metawibele/tools/combine_gene_sequences.py -> build/lib/metawibele/tools 2024-08-20T03:27:08,586 copying metawibele/tools/extract_complete_ORF_seq.py -> build/lib/metawibele/tools 2024-08-20T03:27:08,588 copying metawibele/tools/format_protein_sequences.py -> build/lib/metawibele/tools 2024-08-20T03:27:08,590 copying metawibele/tools/preprocessing_tasks.py -> build/lib/metawibele/tools 2024-08-20T03:27:08,592 copying metawibele/tools/extract_non_redundance_seq.py -> build/lib/metawibele/tools 2024-08-20T03:27:08,594 copying metawibele/tools/gene_abundance.py -> build/lib/metawibele/tools 2024-08-20T03:27:08,596 copying metawibele/tools/format_contig_sequences.py -> build/lib/metawibele/tools 2024-08-20T03:27:08,598 copying metawibele/tools/extract_protein_coding_genes.py -> build/lib/metawibele/tools 2024-08-20T03:27:08,600 creating build/lib/metawibele/tasks 2024-08-20T03:27:08,601 copying metawibele/tasks/characterization.py -> build/lib/metawibele/tasks 2024-08-20T03:27:08,604 copying metawibele/tasks/__init__.py -> build/lib/metawibele/tasks 2024-08-20T03:27:08,605 copying metawibele/tasks/prioritization.py -> build/lib/metawibele/tasks 2024-08-20T03:27:08,615 creating build/lib/metawibele/workflows 2024-08-20T03:27:08,616 copying metawibele/workflows/prioritize.py -> build/lib/metawibele/workflows 2024-08-20T03:27:08,619 copying metawibele/workflows/preprocess.py -> build/lib/metawibele/workflows 2024-08-20T03:27:08,621 copying metawibele/workflows/characterize.py -> build/lib/metawibele/workflows 2024-08-20T03:27:08,624 creating build/lib/metawibele/configs 2024-08-20T03:27:08,624 copying metawibele/configs/prioritization.cfg -> build/lib/metawibele/configs 2024-08-20T03:27:08,627 copying metawibele/configs/metawibele.cfg -> build/lib/metawibele/configs 2024-08-20T03:27:08,629 copying metawibele/configs/characterization.cfg -> build/lib/metawibele/configs 2024-08-20T03:27:08,631 copying metawibele/configs/MSPminer_setting.cfg -> build/lib/metawibele/configs 2024-08-20T03:27:08,633 creating build/lib/metawibele/data 2024-08-20T03:27:08,633 creating build/lib/metawibele/data/domain 2024-08-20T03:27:08,634 copying metawibele/data/domain/Human_proteome_map_colon_rectum.txt.gz -> build/lib/metawibele/data/domain 2024-08-20T03:27:08,638 copying metawibele/data/domain/FANTOM5_colon_rectum.txt.gz -> build/lib/metawibele/data/domain 2024-08-20T03:27:08,643 copying metawibele/data/domain/GTEx_sigmoid_transverse_colon.txt.gz -> build/lib/metawibele/data/domain 2024-08-20T03:27:08,648 copying metawibele/data/domain/README.txt -> build/lib/metawibele/data/domain 2024-08-20T03:27:08,650 copying metawibele/data/domain/Encode_sigmoid_colon.txt.gz -> build/lib/metawibele/data/domain 2024-08-20T03:27:08,656 copying metawibele/data/domain/pfam_descriptions.txt.gz -> build/lib/metawibele/data/domain 2024-08-20T03:27:08,664 copying metawibele/data/domain/pdb_chain_pfam.tsv.gz -> build/lib/metawibele/data/domain 2024-08-20T03:27:08,712 copying metawibele/data/domain/Illumina_Body_Map_colon.txt.gz -> build/lib/metawibele/data/domain 2024-08-20T03:27:08,716 copying metawibele/data/domain/gene_ontology.txt.gz -> build/lib/metawibele/data/domain 2024-08-20T03:27:08,721 copying metawibele/data/domain/INTERACTION.txt.gz -> build/lib/metawibele/data/domain 2024-08-20T03:27:08,726 copying metawibele/data/domain/32_Uhlen_Lab_colon_rectum.txt.gz -> build/lib/metawibele/data/domain 2024-08-20T03:27:08,733 copying metawibele/data/domain/Human_protein_Atlas_colon_rectum.txt.gz -> build/lib/metawibele/data/domain 2024-08-20T03:27:08,736 copying metawibele/data/domain/pdb_chain_taxonomy.tsv.gz -> build/lib/metawibele/data/domain 2024-08-20T03:27:09,139 creating build/lib/metawibele/data/uniref 2024-08-20T03:27:09,140 copying metawibele/data/uniref/uniprot_human_pfam.tsv.gz -> build/lib/metawibele/data/uniref 2024-08-20T03:27:09,180 copying metawibele/data/uniref/map_Rep_TaxID_uniref90.demo.txt.gz -> build/lib/metawibele/data/uniref 2024-08-20T03:27:09,206 copying metawibele/data/uniref/uniprot_taxaID_mammalia.txt.gz -> build/lib/metawibele/data/uniref 2024-08-20T03:27:09,209 copying metawibele/data/uniref/uniref90.demo.fasta.dmnd -> build/lib/metawibele/data/uniref 2024-08-20T03:27:09,221 copying metawibele/data/uniref/uniprot_taxonomy.tsv.gz -> build/lib/metawibele/data/uniref 2024-08-20T03:27:09,846 copying metawibele/data/uniref/README.txt -> build/lib/metawibele/data/uniref 2024-08-20T03:27:09,848 copying metawibele/data/uniref/uniprot_taxaID_microbiome.txt.gz -> build/lib/metawibele/data/uniref 2024-08-20T03:27:09,878 copying metawibele/data/uniref/map_Tax_uniref90.demo.txt.gz -> build/lib/metawibele/data/uniref 2024-08-20T03:27:09,945 copying metawibele/data/uniref/map_Rep_Tax_uniref90.demo.txt.gz -> build/lib/metawibele/data/uniref 2024-08-20T03:27:09,975 copying metawibele/data/uniref/map_TaxID_uniref90.demo.txt.gz -> build/lib/metawibele/data/uniref 2024-08-20T03:27:10,049 creating build/lib/metawibele/data/misc 2024-08-20T03:27:10,050 copying metawibele/data/misc/vignette_function.tsv -> build/lib/metawibele/data/misc 2024-08-20T03:27:10,053 creating build/lib/metawibele/Rscripts 2024-08-20T03:27:10,054 copying metawibele/Rscripts/maaslin2_utils.R -> build/lib/metawibele/Rscripts 2024-08-20T03:27:10,056 copying metawibele/Rscripts/pcl_utils.R -> build/lib/metawibele/Rscripts 2024-08-20T03:27:10,064 running build_scripts 2024-08-20T03:27:10,065 creating build/scripts-3.11 2024-08-20T03:27:10,066 copying and adjusting metawibele/workflows/prioritize.py -> build/scripts-3.11 2024-08-20T03:27:10,069 copying and adjusting metawibele/workflows/preprocess.py -> build/scripts-3.11 2024-08-20T03:27:10,072 copying and adjusting metawibele/workflows/characterize.py -> build/scripts-3.11 2024-08-20T03:27:10,075 changing mode of build/scripts-3.11/prioritize.py from 644 to 755 2024-08-20T03:27:10,075 changing mode of build/scripts-3.11/preprocess.py from 644 to 755 2024-08-20T03:27:10,076 changing mode of build/scripts-3.11/characterize.py from 644 to 755 2024-08-20T03:27:10,107 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-08-20T03:27:10,107 !! 2024-08-20T03:27:10,109 ******************************************************************************** 2024-08-20T03:27:10,109 Please avoid running ``setup.py`` directly. 2024-08-20T03:27:10,110 Instead, use pypa/build, pypa/installer or other 2024-08-20T03:27:10,110 standards-based tools. 2024-08-20T03:27:10,112 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-08-20T03:27:10,112 ******************************************************************************** 2024-08-20T03:27:10,113 !! 2024-08-20T03:27:10,114 self.initialize_options() 2024-08-20T03:27:10,136 installing to build/bdist.linux-armv7l/wheel 2024-08-20T03:27:10,137 running install 2024-08-20T03:27:10,161 running install_lib 2024-08-20T03:27:10,190 creating build/bdist.linux-armv7l 2024-08-20T03:27:10,190 creating build/bdist.linux-armv7l/wheel 2024-08-20T03:27:10,192 creating build/bdist.linux-armv7l/wheel/metawibele 2024-08-20T03:27:10,193 copying build/lib/metawibele/check.py -> build/bdist.linux-armv7l/wheel/./metawibele 2024-08-20T03:27:10,195 copying build/lib/metawibele/__init__.py -> build/bdist.linux-armv7l/wheel/./metawibele 2024-08-20T03:27:10,198 creating build/bdist.linux-armv7l/wheel/metawibele/common 2024-08-20T03:27:10,199 copying build/lib/metawibele/common/extract_abundance_sample_subset.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,201 copying build/lib/metawibele/common/__init__.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,203 copying build/lib/metawibele/common/filter_clusters.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,205 copying build/lib/metawibele/common/abundance_smoothing.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,207 copying build/lib/metawibele/common/prepare_uniref_annotation.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,210 copying build/lib/metawibele/common/transpose.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,211 copying build/lib/metawibele/common/split_fasta_file.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,213 copying build/lib/metawibele/common/check_install.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,216 copying build/lib/metawibele/common/prepare_uniprot_taxonomy.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,218 copying build/lib/metawibele/common/download_config_file.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,220 copying build/lib/metawibele/common/utils.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,222 copying build/lib/metawibele/common/extract_uniprot_pfam.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,224 copying build/lib/metawibele/common/combine_abundance_annotation.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,226 copying build/lib/metawibele/common/abundance_RPK.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,229 copying build/lib/metawibele/common/download_database.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,231 copying build/lib/metawibele/common/prepare_domain_databases.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,233 copying build/lib/metawibele/common/abundance_filtering.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,235 copying build/lib/metawibele/common/prepare_uniprot_annotation.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,237 copying build/lib/metawibele/common/extract_abundance_feature_subset.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,239 copying build/lib/metawibele/common/filter_prevalence.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,242 copying build/lib/metawibele/common/join_family_abundance.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,244 copying build/lib/metawibele/common/abundance_normalization.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,246 copying build/lib/metawibele/common/split_family_abundance.py -> build/bdist.linux-armv7l/wheel/./metawibele/common 2024-08-20T03:27:10,248 creating build/bdist.linux-armv7l/wheel/metawibele/data 2024-08-20T03:27:10,250 creating build/bdist.linux-armv7l/wheel/metawibele/data/domain 2024-08-20T03:27:10,251 copying build/lib/metawibele/data/domain/Human_proteome_map_colon_rectum.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,255 copying build/lib/metawibele/data/domain/FANTOM5_colon_rectum.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,260 copying build/lib/metawibele/data/domain/GTEx_sigmoid_transverse_colon.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,267 copying build/lib/metawibele/data/domain/README.txt -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,268 copying build/lib/metawibele/data/domain/Encode_sigmoid_colon.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,274 copying build/lib/metawibele/data/domain/pfam_descriptions.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,279 copying build/lib/metawibele/data/domain/pdb_chain_pfam.tsv.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,320 copying build/lib/metawibele/data/domain/Illumina_Body_Map_colon.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,324 copying build/lib/metawibele/data/domain/gene_ontology.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,328 copying build/lib/metawibele/data/domain/INTERACTION.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,333 copying build/lib/metawibele/data/domain/32_Uhlen_Lab_colon_rectum.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,338 copying build/lib/metawibele/data/domain/Human_protein_Atlas_colon_rectum.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,340 copying build/lib/metawibele/data/domain/pdb_chain_taxonomy.tsv.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/domain 2024-08-20T03:27:10,733 creating build/bdist.linux-armv7l/wheel/metawibele/data/misc 2024-08-20T03:27:10,734 copying build/lib/metawibele/data/misc/vignette_function.tsv -> build/bdist.linux-armv7l/wheel/./metawibele/data/misc 2024-08-20T03:27:10,736 creating build/bdist.linux-armv7l/wheel/metawibele/data/uniref 2024-08-20T03:27:10,737 copying build/lib/metawibele/data/uniref/uniprot_human_pfam.tsv.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/uniref 2024-08-20T03:27:10,770 copying build/lib/metawibele/data/uniref/map_Rep_TaxID_uniref90.demo.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/uniref 2024-08-20T03:27:10,797 copying build/lib/metawibele/data/uniref/uniprot_taxaID_mammalia.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/uniref 2024-08-20T03:27:10,800 copying build/lib/metawibele/data/uniref/uniref90.demo.fasta.dmnd -> build/bdist.linux-armv7l/wheel/./metawibele/data/uniref 2024-08-20T03:27:10,812 copying build/lib/metawibele/data/uniref/uniprot_taxonomy.tsv.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/uniref 2024-08-20T03:27:11,943 copying build/lib/metawibele/data/uniref/README.txt -> build/bdist.linux-armv7l/wheel/./metawibele/data/uniref 2024-08-20T03:27:11,945 copying build/lib/metawibele/data/uniref/uniprot_taxaID_microbiome.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/uniref 2024-08-20T03:27:11,976 copying build/lib/metawibele/data/uniref/map_Tax_uniref90.demo.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/uniref 2024-08-20T03:27:12,040 copying build/lib/metawibele/data/uniref/map_Rep_Tax_uniref90.demo.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/uniref 2024-08-20T03:27:12,065 copying build/lib/metawibele/data/uniref/map_TaxID_uniref90.demo.txt.gz -> build/bdist.linux-armv7l/wheel/./metawibele/data/uniref 2024-08-20T03:27:12,135 creating build/bdist.linux-armv7l/wheel/metawibele/Rscripts 2024-08-20T03:27:12,136 copying build/lib/metawibele/Rscripts/maaslin2_utils.R -> build/bdist.linux-armv7l/wheel/./metawibele/Rscripts 2024-08-20T03:27:12,138 copying build/lib/metawibele/Rscripts/pcl_utils.R -> build/bdist.linux-armv7l/wheel/./metawibele/Rscripts 2024-08-20T03:27:12,142 creating build/bdist.linux-armv7l/wheel/metawibele/prioritize 2024-08-20T03:27:12,143 copying build/lib/metawibele/prioritize/__init__.py -> build/bdist.linux-armv7l/wheel/./metawibele/prioritize 2024-08-20T03:27:12,144 copying build/lib/metawibele/prioritize/filter_prioritization.py -> build/bdist.linux-armv7l/wheel/./metawibele/prioritize 2024-08-20T03:27:12,147 copying build/lib/metawibele/prioritize/finalize_prioritization.py -> build/bdist.linux-armv7l/wheel/./metawibele/prioritize 2024-08-20T03:27:12,149 copying build/lib/metawibele/prioritize/quantify_prioritization.py -> build/bdist.linux-armv7l/wheel/./metawibele/prioritize 2024-08-20T03:27:12,153 creating build/bdist.linux-armv7l/wheel/metawibele/characterize 2024-08-20T03:27:12,154 copying build/lib/metawibele/characterize/mspminer_msp_uniref_annotation.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,156 copying build/lib/metawibele/characterize/ddi_DOMINE_ann.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,158 copying build/lib/metawibele/characterize/finalize_annotation.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,161 copying build/lib/metawibele/characterize/mspminer_msp_taxonomy_annotation.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,163 copying build/lib/metawibele/characterize/__init__.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,165 copying build/lib/metawibele/characterize/summary_protein_uniref_annotation.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,167 copying build/lib/metawibele/characterize/maaslin2_annotator.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,169 copying build/lib/metawibele/characterize/interproscan_pfam_protein_family.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,172 copying build/lib/metawibele/characterize/uniref_annotator_stat.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,174 copying build/lib/metawibele/characterize/interproscan_phobius_protein_family.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,176 copying build/lib/metawibele/characterize/abundance_annotator.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,179 copying build/lib/metawibele/characterize/summary_all_annotation.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,181 copying build/lib/metawibele/characterize/interproscan_protein.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,183 copying build/lib/metawibele/characterize/denovo_TM_SP.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,186 copying build/lib/metawibele/characterize/interproscan_tmhmm_protein_family.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,188 copying build/lib/metawibele/characterize/psortb_protein.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,190 copying build/lib/metawibele/characterize/sum_to_protein_family_abundance.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,192 copying build/lib/metawibele/characterize/msp_protein_family.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,195 copying build/lib/metawibele/characterize/ddi_DOMINE_ExpAtlas.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,197 copying build/lib/metawibele/characterize/uniref_protein_family.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,200 copying build/lib/metawibele/characterize/utils.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,202 copying build/lib/metawibele/characterize/interproscan_signalp_protein_family.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,204 copying build/lib/metawibele/characterize/mspminer_protein.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,207 copying build/lib/metawibele/characterize/uniref_annotator.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,209 copying build/lib/metawibele/characterize/pfam2go.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,211 copying build/lib/metawibele/characterize/maaslin2_collection.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,214 copying build/lib/metawibele/characterize/mspminer_msp.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,216 copying build/lib/metawibele/characterize/ddi_DOMINE_protein.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,219 copying build/lib/metawibele/characterize/uniref_protein.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,221 copying build/lib/metawibele/characterize/interproscan_annotator.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,223 copying build/lib/metawibele/characterize/summary_protein_family_uniref_annotation.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,226 copying build/lib/metawibele/characterize/metadata_format.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,228 copying build/lib/metawibele/characterize/psortb_protein_family.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,230 copying build/lib/metawibele/characterize/mspminer_protein_family_taxonomy.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,232 copying build/lib/metawibele/characterize/ddi_DOMINE_SIFTS.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,235 copying build/lib/metawibele/characterize/psortb_annotator.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,237 copying build/lib/metawibele/characterize/maaslin2.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,239 copying build/lib/metawibele/characterize/summary_function_annotation.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,241 copying build/lib/metawibele/characterize/interproscan_protein_family.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,244 copying build/lib/metawibele/characterize/maaslin2_summary.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,247 copying build/lib/metawibele/characterize/ddi_DOMINE_protein_family.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,249 copying build/lib/metawibele/characterize/mspminer_protein_family.py -> build/bdist.linux-armv7l/wheel/./metawibele/characterize 2024-08-20T03:27:12,251 copying build/lib/metawibele/config.py -> build/bdist.linux-armv7l/wheel/./metawibele 2024-08-20T03:27:12,254 creating build/bdist.linux-armv7l/wheel/metawibele/tools 2024-08-20T03:27:12,255 copying build/lib/metawibele/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./metawibele/tools 2024-08-20T03:27:12,257 copying build/lib/metawibele/tools/gene_catalog_abundance.py -> build/bdist.linux-armv7l/wheel/./metawibele/tools 2024-08-20T03:27:12,259 copying build/lib/metawibele/tools/extract_cluster_CD_hit.py -> build/bdist.linux-armv7l/wheel/./metawibele/tools 2024-08-20T03:27:12,261 copying build/lib/metawibele/tools/gene_abundance_indexRef.py -> build/bdist.linux-armv7l/wheel/./metawibele/tools 2024-08-20T03:27:12,263 copying build/lib/metawibele/tools/combine_gene_sequences.py -> build/bdist.linux-armv7l/wheel/./metawibele/tools 2024-08-20T03:27:12,266 copying build/lib/metawibele/tools/extract_complete_ORF_seq.py -> build/bdist.linux-armv7l/wheel/./metawibele/tools 2024-08-20T03:27:12,268 copying build/lib/metawibele/tools/format_protein_sequences.py -> build/bdist.linux-armv7l/wheel/./metawibele/tools 2024-08-20T03:27:12,270 copying build/lib/metawibele/tools/preprocessing_tasks.py -> build/bdist.linux-armv7l/wheel/./metawibele/tools 2024-08-20T03:27:12,273 copying build/lib/metawibele/tools/extract_non_redundance_seq.py -> build/bdist.linux-armv7l/wheel/./metawibele/tools 2024-08-20T03:27:12,275 copying build/lib/metawibele/tools/gene_abundance.py -> build/bdist.linux-armv7l/wheel/./metawibele/tools 2024-08-20T03:27:12,277 copying build/lib/metawibele/tools/format_contig_sequences.py -> build/bdist.linux-armv7l/wheel/./metawibele/tools 2024-08-20T03:27:12,279 copying build/lib/metawibele/tools/extract_protein_coding_genes.py -> build/bdist.linux-armv7l/wheel/./metawibele/tools 2024-08-20T03:27:12,281 copying build/lib/metawibele/utilities.py -> build/bdist.linux-armv7l/wheel/./metawibele 2024-08-20T03:27:12,284 creating build/bdist.linux-armv7l/wheel/metawibele/configs 2024-08-20T03:27:12,286 copying build/lib/metawibele/configs/prioritization.cfg -> build/bdist.linux-armv7l/wheel/./metawibele/configs 2024-08-20T03:27:12,288 copying build/lib/metawibele/configs/metawibele.cfg -> build/bdist.linux-armv7l/wheel/./metawibele/configs 2024-08-20T03:27:12,290 copying build/lib/metawibele/configs/characterization.cfg -> build/bdist.linux-armv7l/wheel/./metawibele/configs 2024-08-20T03:27:12,292 copying build/lib/metawibele/configs/MSPminer_setting.cfg -> build/bdist.linux-armv7l/wheel/./metawibele/configs 2024-08-20T03:27:12,294 creating build/bdist.linux-armv7l/wheel/metawibele/tasks 2024-08-20T03:27:12,294 copying build/lib/metawibele/tasks/characterization.py -> build/bdist.linux-armv7l/wheel/./metawibele/tasks 2024-08-20T03:27:12,298 copying build/lib/metawibele/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./metawibele/tasks 2024-08-20T03:27:12,300 copying build/lib/metawibele/tasks/prioritization.py -> build/bdist.linux-armv7l/wheel/./metawibele/tasks 2024-08-20T03:27:12,302 copying build/lib/metawibele/metawibele.py -> build/bdist.linux-armv7l/wheel/./metawibele 2024-08-20T03:27:12,304 creating build/bdist.linux-armv7l/wheel/metawibele/workflows 2024-08-20T03:27:12,305 copying build/lib/metawibele/workflows/prioritize.py -> build/bdist.linux-armv7l/wheel/./metawibele/workflows 2024-08-20T03:27:12,307 copying build/lib/metawibele/workflows/preprocess.py -> build/bdist.linux-armv7l/wheel/./metawibele/workflows 2024-08-20T03:27:12,310 copying build/lib/metawibele/workflows/characterize.py -> build/bdist.linux-armv7l/wheel/./metawibele/workflows 2024-08-20T03:27:12,312 running install_egg_info 2024-08-20T03:27:12,342 running egg_info 2024-08-20T03:27:12,370 writing metawibele.egg-info/PKG-INFO 2024-08-20T03:27:12,375 writing dependency_links to metawibele.egg-info/dependency_links.txt 2024-08-20T03:27:12,380 writing entry points to metawibele.egg-info/entry_points.txt 2024-08-20T03:27:12,383 writing top-level names to metawibele.egg-info/top_level.txt 2024-08-20T03:27:12,433 reading manifest file 'metawibele.egg-info/SOURCES.txt' 2024-08-20T03:27:12,443 reading manifest template 'MANIFEST.in' 2024-08-20T03:27:12,444 warning: no files found matching 'readme.md' 2024-08-20T03:27:12,460 adding license file 'LICENSE' 2024-08-20T03:27:12,469 writing manifest file 'metawibele.egg-info/SOURCES.txt' 2024-08-20T03:27:12,472 Copying metawibele.egg-info to build/bdist.linux-armv7l/wheel/./metawibele-0.4.8-py3.11.egg-info 2024-08-20T03:27:12,485 running install_scripts 2024-08-20T03:27:12,487 creating build/bdist.linux-armv7l/wheel/metawibele-0.4.8.data 2024-08-20T03:27:12,487 creating build/bdist.linux-armv7l/wheel/metawibele-0.4.8.data/scripts 2024-08-20T03:27:12,488 copying build/scripts-3.11/prioritize.py -> build/bdist.linux-armv7l/wheel/metawibele-0.4.8.data/scripts 2024-08-20T03:27:12,491 copying build/scripts-3.11/preprocess.py -> build/bdist.linux-armv7l/wheel/metawibele-0.4.8.data/scripts 2024-08-20T03:27:12,493 copying build/scripts-3.11/characterize.py -> build/bdist.linux-armv7l/wheel/metawibele-0.4.8.data/scripts 2024-08-20T03:27:12,495 changing mode of build/bdist.linux-armv7l/wheel/metawibele-0.4.8.data/scripts/prioritize.py to 755 2024-08-20T03:27:12,496 changing mode of build/bdist.linux-armv7l/wheel/metawibele-0.4.8.data/scripts/preprocess.py to 755 2024-08-20T03:27:12,497 changing mode of build/bdist.linux-armv7l/wheel/metawibele-0.4.8.data/scripts/characterize.py to 755 2024-08-20T03:27:12,511 creating build/bdist.linux-armv7l/wheel/metawibele-0.4.8.dist-info/WHEEL 2024-08-20T03:27:12,513 creating '/tmp/pip-wheel-5xy0bnnr/metawibele-0.4.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-08-20T03:27:12,516 adding 'metawibele/__init__.py' 2024-08-20T03:27:12,517 adding 'metawibele/check.py' 2024-08-20T03:27:12,520 adding 'metawibele/config.py' 2024-08-20T03:27:12,522 adding 'metawibele/metawibele.py' 2024-08-20T03:27:12,526 adding 'metawibele/utilities.py' 2024-08-20T03:27:12,528 adding 'metawibele/Rscripts/maaslin2_utils.R' 2024-08-20T03:27:12,535 adding 'metawibele/Rscripts/pcl_utils.R' 2024-08-20T03:27:12,538 adding 'metawibele/characterize/__init__.py' 2024-08-20T03:27:12,540 adding 'metawibele/characterize/abundance_annotator.py' 2024-08-20T03:27:12,542 adding 'metawibele/characterize/ddi_DOMINE_ExpAtlas.py' 2024-08-20T03:27:12,544 adding 'metawibele/characterize/ddi_DOMINE_SIFTS.py' 2024-08-20T03:27:12,546 adding 'metawibele/characterize/ddi_DOMINE_ann.py' 2024-08-20T03:27:12,548 adding 'metawibele/characterize/ddi_DOMINE_protein.py' 2024-08-20T03:27:12,550 adding 'metawibele/characterize/ddi_DOMINE_protein_family.py' 2024-08-20T03:27:12,551 adding 'metawibele/characterize/denovo_TM_SP.py' 2024-08-20T03:27:12,554 adding 'metawibele/characterize/finalize_annotation.py' 2024-08-20T03:27:12,555 adding 'metawibele/characterize/interproscan_annotator.py' 2024-08-20T03:27:12,557 adding 'metawibele/characterize/interproscan_pfam_protein_family.py' 2024-08-20T03:27:12,559 adding 'metawibele/characterize/interproscan_phobius_protein_family.py' 2024-08-20T03:27:12,560 adding 'metawibele/characterize/interproscan_protein.py' 2024-08-20T03:27:12,562 adding 'metawibele/characterize/interproscan_protein_family.py' 2024-08-20T03:27:12,564 adding 'metawibele/characterize/interproscan_signalp_protein_family.py' 2024-08-20T03:27:12,566 adding 'metawibele/characterize/interproscan_tmhmm_protein_family.py' 2024-08-20T03:27:12,568 adding 'metawibele/characterize/maaslin2.py' 2024-08-20T03:27:12,569 adding 'metawibele/characterize/maaslin2_annotator.py' 2024-08-20T03:27:12,572 adding 'metawibele/characterize/maaslin2_collection.py' 2024-08-20T03:27:12,574 adding 'metawibele/characterize/maaslin2_summary.py' 2024-08-20T03:27:12,576 adding 'metawibele/characterize/metadata_format.py' 2024-08-20T03:27:12,578 adding 'metawibele/characterize/msp_protein_family.py' 2024-08-20T03:27:12,579 adding 'metawibele/characterize/mspminer_msp.py' 2024-08-20T03:27:12,581 adding 'metawibele/characterize/mspminer_msp_taxonomy_annotation.py' 2024-08-20T03:27:12,583 adding 'metawibele/characterize/mspminer_msp_uniref_annotation.py' 2024-08-20T03:27:12,585 adding 'metawibele/characterize/mspminer_protein.py' 2024-08-20T03:27:12,587 adding 'metawibele/characterize/mspminer_protein_family.py' 2024-08-20T03:27:12,589 adding 'metawibele/characterize/mspminer_protein_family_taxonomy.py' 2024-08-20T03:27:12,591 adding 'metawibele/characterize/pfam2go.py' 2024-08-20T03:27:12,593 adding 'metawibele/characterize/psortb_annotator.py' 2024-08-20T03:27:12,594 adding 'metawibele/characterize/psortb_protein.py' 2024-08-20T03:27:12,596 adding 'metawibele/characterize/psortb_protein_family.py' 2024-08-20T03:27:12,598 adding 'metawibele/characterize/sum_to_protein_family_abundance.py' 2024-08-20T03:27:12,600 adding 'metawibele/characterize/summary_all_annotation.py' 2024-08-20T03:27:12,602 adding 'metawibele/characterize/summary_function_annotation.py' 2024-08-20T03:27:12,605 adding 'metawibele/characterize/summary_protein_family_uniref_annotation.py' 2024-08-20T03:27:12,607 adding 'metawibele/characterize/summary_protein_uniref_annotation.py' 2024-08-20T03:27:12,609 adding 'metawibele/characterize/uniref_annotator.py' 2024-08-20T03:27:12,611 adding 'metawibele/characterize/uniref_annotator_stat.py' 2024-08-20T03:27:12,613 adding 'metawibele/characterize/uniref_protein.py' 2024-08-20T03:27:12,615 adding 'metawibele/characterize/uniref_protein_family.py' 2024-08-20T03:27:12,617 adding 'metawibele/characterize/utils.py' 2024-08-20T03:27:12,619 adding 'metawibele/common/__init__.py' 2024-08-20T03:27:12,621 adding 'metawibele/common/abundance_RPK.py' 2024-08-20T03:27:12,622 adding 'metawibele/common/abundance_filtering.py' 2024-08-20T03:27:12,624 adding 'metawibele/common/abundance_normalization.py' 2024-08-20T03:27:12,626 adding 'metawibele/common/abundance_smoothing.py' 2024-08-20T03:27:12,628 adding 'metawibele/common/check_install.py' 2024-08-20T03:27:12,629 adding 'metawibele/common/combine_abundance_annotation.py' 2024-08-20T03:27:12,631 adding 'metawibele/common/download_config_file.py' 2024-08-20T03:27:12,632 adding 'metawibele/common/download_database.py' 2024-08-20T03:27:12,634 adding 'metawibele/common/extract_abundance_feature_subset.py' 2024-08-20T03:27:12,635 adding 'metawibele/common/extract_abundance_sample_subset.py' 2024-08-20T03:27:12,636 adding 'metawibele/common/extract_uniprot_pfam.py' 2024-08-20T03:27:12,638 adding 'metawibele/common/filter_clusters.py' 2024-08-20T03:27:12,639 adding 'metawibele/common/filter_prevalence.py' 2024-08-20T03:27:12,640 adding 'metawibele/common/join_family_abundance.py' 2024-08-20T03:27:12,642 adding 'metawibele/common/prepare_domain_databases.py' 2024-08-20T03:27:12,644 adding 'metawibele/common/prepare_uniprot_annotation.py' 2024-08-20T03:27:12,645 adding 'metawibele/common/prepare_uniprot_taxonomy.py' 2024-08-20T03:27:12,647 adding 'metawibele/common/prepare_uniref_annotation.py' 2024-08-20T03:27:12,649 adding 'metawibele/common/split_family_abundance.py' 2024-08-20T03:27:12,650 adding 'metawibele/common/split_fasta_file.py' 2024-08-20T03:27:12,652 adding 'metawibele/common/transpose.py' 2024-08-20T03:27:12,654 adding 'metawibele/common/utils.py' 2024-08-20T03:27:12,655 adding 'metawibele/configs/MSPminer_setting.cfg' 2024-08-20T03:27:12,657 adding 'metawibele/configs/characterization.cfg' 2024-08-20T03:27:12,658 adding 'metawibele/configs/metawibele.cfg' 2024-08-20T03:27:12,659 adding 'metawibele/configs/prioritization.cfg' 2024-08-20T03:27:12,681 adding 'metawibele/data/domain/32_Uhlen_Lab_colon_rectum.txt.gz' 2024-08-20T03:27:12,696 adding 'metawibele/data/domain/Encode_sigmoid_colon.txt.gz' 2024-08-20T03:27:12,713 adding 'metawibele/data/domain/FANTOM5_colon_rectum.txt.gz' 2024-08-20T03:27:12,734 adding 'metawibele/data/domain/GTEx_sigmoid_transverse_colon.txt.gz' 2024-08-20T03:27:12,739 adding 'metawibele/data/domain/Human_protein_Atlas_colon_rectum.txt.gz' 2024-08-20T03:27:12,750 adding 'metawibele/data/domain/Human_proteome_map_colon_rectum.txt.gz' 2024-08-20T03:27:12,767 adding 'metawibele/data/domain/INTERACTION.txt.gz' 2024-08-20T03:27:12,783 adding 'metawibele/data/domain/Illumina_Body_Map_colon.txt.gz' 2024-08-20T03:27:12,785 adding 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'metawibele/tools/extract_cluster_CD_hit.py' 2024-08-20T03:27:24,792 adding 'metawibele/tools/extract_complete_ORF_seq.py' 2024-08-20T03:27:24,793 adding 'metawibele/tools/extract_non_redundance_seq.py' 2024-08-20T03:27:24,794 adding 'metawibele/tools/extract_protein_coding_genes.py' 2024-08-20T03:27:24,796 adding 'metawibele/tools/format_contig_sequences.py' 2024-08-20T03:27:24,798 adding 'metawibele/tools/format_protein_sequences.py' 2024-08-20T03:27:24,802 adding 'metawibele/tools/gene_abundance.py' 2024-08-20T03:27:24,804 adding 'metawibele/tools/gene_abundance_indexRef.py' 2024-08-20T03:27:24,805 adding 'metawibele/tools/gene_catalog_abundance.py' 2024-08-20T03:27:24,808 adding 'metawibele/tools/preprocessing_tasks.py' 2024-08-20T03:27:24,811 adding 'metawibele/workflows/characterize.py' 2024-08-20T03:27:24,813 adding 'metawibele/workflows/preprocess.py' 2024-08-20T03:27:24,814 adding 'metawibele/workflows/prioritize.py' 2024-08-20T03:27:24,817 adding 'metawibele-0.4.8.data/scripts/characterize.py' 2024-08-20T03:27:24,819 adding 'metawibele-0.4.8.data/scripts/preprocess.py' 2024-08-20T03:27:24,820 adding 'metawibele-0.4.8.data/scripts/prioritize.py' 2024-08-20T03:27:24,823 adding 'metawibele-0.4.8.dist-info/LICENSE' 2024-08-20T03:27:24,824 adding 'metawibele-0.4.8.dist-info/METADATA' 2024-08-20T03:27:24,825 adding 'metawibele-0.4.8.dist-info/WHEEL' 2024-08-20T03:27:24,826 adding 'metawibele-0.4.8.dist-info/entry_points.txt' 2024-08-20T03:27:24,827 adding 'metawibele-0.4.8.dist-info/top_level.txt' 2024-08-20T03:27:24,830 adding 'metawibele-0.4.8.dist-info/RECORD' 2024-08-20T03:27:25,330 removing build/bdist.linux-armv7l/wheel 2024-08-20T03:27:25,509 Building wheel for metawibele (setup.py): finished with status 'done' 2024-08-20T03:27:26,338 Created wheel for metawibele: filename=metawibele-0.4.8-py3-none-any.whl size=84127301 sha256=316636dc4094e822ac508a126b7b48467e760887644ddcac7050635fa9b9fdf3 2024-08-20T03:27:26,340 Stored in directory: /tmp/pip-ephem-wheel-cache-l_gabn8f/wheels/8e/9d/11/cbfef82ae20adfa8b1e1b701d5ef89aa02a9c8a7c2669aa2c3 2024-08-20T03:27:26,378 Successfully built metawibele 2024-08-20T03:27:28,275 Removed build tracker: '/tmp/pip-build-tracker-80eaft1z'