2024-08-21T10:40:03,376 Created temporary directory: /tmp/pip-build-tracker-0xnbbhpt 2024-08-21T10:40:03,377 Initialized build tracking at /tmp/pip-build-tracker-0xnbbhpt 2024-08-21T10:40:03,378 Created build tracker: /tmp/pip-build-tracker-0xnbbhpt 2024-08-21T10:40:03,378 Entered build tracker: /tmp/pip-build-tracker-0xnbbhpt 2024-08-21T10:40:03,379 Created temporary directory: /tmp/pip-wheel-dhyiodmr 2024-08-21T10:40:03,383 Created temporary directory: /tmp/pip-ephem-wheel-cache-si9g_rdl 2024-08-21T10:40:03,427 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-08-21T10:40:03,430 2 location(s) to search for versions of cami-amber: 2024-08-21T10:40:03,430 * https://pypi.org/simple/cami-amber/ 2024-08-21T10:40:03,430 * https://www.piwheels.org/simple/cami-amber/ 2024-08-21T10:40:03,431 Fetching project page and analyzing links: https://pypi.org/simple/cami-amber/ 2024-08-21T10:40:03,431 Getting page https://pypi.org/simple/cami-amber/ 2024-08-21T10:40:03,433 Found index url https://pypi.org/simple/ 2024-08-21T10:40:03,646 Fetched page https://pypi.org/simple/cami-amber/ as application/vnd.pypi.simple.v1+json 2024-08-21T10:40:03,651 Found link https://files.pythonhosted.org/packages/23/68/3511524dda2de993f8613d26b6319bcd2b2ee4f215ae00b82b73d1e9c2b8/cami-amber-0.7.0.tar.gz (from https://pypi.org/simple/cami-amber/), version: 0.7.0 2024-08-21T10:40:03,652 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/22/05/b36682e0f8ac5378baa3c0570a4b5f6c49071f146c75eb42f49392d3394e/cami_amber-0.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,653 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/63/e0/0d76574bcf28b4c2c5e43fc34d018431c74ec9677a1340275d4cbb67c5f4/cami_amber-0.7.0-py35-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,653 Found link https://files.pythonhosted.org/packages/2c/13/b2f7d53fbcf883c6d121e76cec1a654579816a9cda3bc1a5b93c71db81b9/cami-amber-0.7.1.tar.gz (from https://pypi.org/simple/cami-amber/), version: 0.7.1 2024-08-21T10:40:03,654 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/1e/94/c31d7bebf94978fcf15531d2086e7a5760a3af68461b317b10e63fc16f84/cami_amber-0.7.1-py35-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,654 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c1/a8/992d55b11fc2e246d2de1a721a8a9e3655ca537812eef8e7e9c886343ce6/cami_amber-1.0-py3.5.egg (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,655 Found link https://files.pythonhosted.org/packages/02/85/476777c88755019c2b6b009f3fab68eb5236aa7cb6e4e5b6ce5eaf380b9d/cami-amber-1.0.1.tar.gz (from https://pypi.org/simple/cami-amber/), version: 1.0.1 2024-08-21T10:40:03,655 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/49/fd/8f04d84405ec570ef5a59d794fa66712fe11049f38fb68e39b8e9d0e3c31/cami_amber-1.0.1-py35-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,656 Found link https://files.pythonhosted.org/packages/8a/eb/1b0f9582223a15ca9f1f53fb570cd3c9022a2d7fc5eab35538a6dce73cd2/cami-amber-1.0.2.tar.gz (from https://pypi.org/simple/cami-amber/), version: 1.0.2 2024-08-21T10:40:03,657 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/0c/93/7d228c4705aa324acb9632afb58d88ed8e5102fb8ada980552dd2fb7c3d3/cami_amber-1.0.2-py35-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,657 Found link https://files.pythonhosted.org/packages/46/12/f7f44ec20d37b71345f19751b91252519e8fc0850d6a62b1bb58c400b619/cami-amber-2.0.0.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.0 2024-08-21T10:40:03,658 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/5c/91/4191a0687e1d1d6cffe9d8998abcf0e8cfc7606e208bf4862231ec6682f4/cami_amber-2.0.0-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,658 Found link https://files.pythonhosted.org/packages/74/45/122265635d0fa0eb7ec210d51248bbd8eafdf24615337595f4d098b837a3/cami-amber-2.0.0.post0.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.0.post0 2024-08-21T10:40:03,659 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/5e/c0/0f32aef8951f3bc37e1aeece6c5cdd99188ea04580dfb5b5438d94096495/cami_amber-2.0.0.post0-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,660 Found link https://files.pythonhosted.org/packages/02/7b/72b90815a23a64644881103082f29cc5e640149cf8fcef86033939a48118/cami-amber-2.0.1.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.1 2024-08-21T10:40:03,660 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/f6/08/cfb0604700e16b488e3a790722ea9862c2f15c759832a466c32f6b63f066/cami_amber-2.0.1-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,661 Found link https://files.pythonhosted.org/packages/da/15/9e4709a9944c6c1b77b7d149fd1e665d6c844bfeb7ae2a4a1d406c021686/cami-amber-2.0.2.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.2 2024-08-21T10:40:03,661 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/40/68/60828147f757e9414ade4490e525434f23031959adb8490f013effe901af/cami_amber-2.0.2-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,662 Found link https://files.pythonhosted.org/packages/e5/8f/d5414f651987baf3f5693675613e706dca91364e6ec8db4d1d3c12b042a5/cami-amber-2.0.3.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.3 2024-08-21T10:40:03,662 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/e2/78/a10cbefe45f4bc26839eaad191d8922cb34df4deffcdc1f0f84bfb3efc62/cami_amber-2.0.3-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,663 Found link https://files.pythonhosted.org/packages/36/ad/e10d1a2d258eb52797ab88e1af0a043f4cfda8420af96a11432ebc75bcf9/cami-amber-2.0.4.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.4 2024-08-21T10:40:03,663 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/2e/37/923fc1cc70fdc49821e73732f1909a4f7d67e4ff2ff88149d5929d07880f/cami_amber-2.0.4-py311-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,664 Found link https://files.pythonhosted.org/packages/ea/69/a93fdeb73dff7b88b61c774c783a05befd1861cdcd4abecb67c6becd37b0/cami-amber-2.0.5.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.5 2024-08-21T10:40:03,665 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/c1/dd/b784586ce1e84bd311529925ace764d57d44e371de7967399a61ed63e705/cami_amber-2.0.5-py311-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-21T10:40:03,666 Fetching project page and analyzing links: https://www.piwheels.org/simple/cami-amber/ 2024-08-21T10:40:03,666 Getting page https://www.piwheels.org/simple/cami-amber/ 2024-08-21T10:40:03,668 Found index url https://www.piwheels.org/simple/ 2024-08-21T10:40:03,827 Fetched page https://www.piwheels.org/simple/cami-amber/ as text/html 2024-08-21T10:40:03,831 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.4-py311-none-any.whl#sha256=b6257b65ca7d44d7909646d3c301ba6b0e615358f4589d5efa3aafcfd1cc7fc2 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-21T10:40:03,832 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.3-py37-none-any.whl#sha256=43e9b1f777c16118cbd4346acedb15bf93f4a488404968f8cdb017dd9d953f75 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-21T10:40:03,833 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.2-py37-none-any.whl#sha256=f5e79dc1ca87ea7359d46bf69926370b7482619626fd263966f71e8aeb52dad9 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-21T10:40:03,834 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.1-py37-none-any.whl#sha256=e1a290dac9f6970409cffcbd9f85afca7cf19271cac91c4df05cbd683320d74a (from https://www.piwheels.org/simple/cami-amber/) 2024-08-21T10:40:03,834 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.0.post0-py37-none-any.whl#sha256=bd25921e8c4082456919a9f5ddeecf11d286ca16fad409649a43e0147aea9ec1 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-21T10:40:03,835 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.0-py37-none-any.whl#sha256=815a88a2479745bb23b1535d60fc24c49aa0355f047a922328b4ce53ec3c4a23 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-21T10:40:03,835 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-1.0.2-py35-none-any.whl#sha256=24717a5f14b57746d37d10a094941e156afddb4d306e21522f716fcc6172c8bd (from https://www.piwheels.org/simple/cami-amber/) 2024-08-21T10:40:03,836 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-1.0.1-py35-none-any.whl#sha256=e8127504b71ae8754b1656e8236d2842f806565d74151745232fcce6035f4f77 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-21T10:40:03,836 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-0.7.1-py35-none-any.whl#sha256=cf020ddd1822ae33b98eb89cc6fcd7554b2f83509561ec216147f9fde7151e47 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-21T10:40:03,837 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-0.7.0-py2.py3-none-any.whl#sha256=5c465a4c2a36470abed50ea87626ea0e314d7241c074550d4ad5a61c149535ac (from https://www.piwheels.org/simple/cami-amber/) 2024-08-21T10:40:03,838 Skipping link: not a file: https://www.piwheels.org/simple/cami-amber/ 2024-08-21T10:40:03,838 Skipping link: not a file: https://pypi.org/simple/cami-amber/ 2024-08-21T10:40:03,858 Given no hashes to check 1 links for project 'cami-amber': discarding no candidates 2024-08-21T10:40:03,859 Collecting cami-amber==2.0.5 2024-08-21T10:40:03,862 Created temporary directory: /tmp/pip-unpack-jw8j6xy9 2024-08-21T10:40:04,073 Downloading cami-amber-2.0.5.tar.gz (61 kB) 2024-08-21T10:40:04,186 Added cami-amber==2.0.5 from https://files.pythonhosted.org/packages/ea/69/a93fdeb73dff7b88b61c774c783a05befd1861cdcd4abecb67c6becd37b0/cami-amber-2.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-0xnbbhpt' 2024-08-21T10:40:04,189 Running setup.py (path:/tmp/pip-wheel-dhyiodmr/cami-amber_41dc533e705642b1acbe91d6601d8b89/setup.py) egg_info for package cami-amber 2024-08-21T10:40:04,190 Created temporary directory: /tmp/pip-pip-egg-info-y4x5ldn0 2024-08-21T10:40:04,190 Preparing metadata (setup.py): started 2024-08-21T10:40:04,191 Running command python setup.py egg_info 2024-08-21T10:40:04,733 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-08-21T10:40:04,734 !! 2024-08-21T10:40:04,735 ******************************************************************************** 2024-08-21T10:40:04,735 Usage of dash-separated 'python-tag' will not be supported in future 2024-08-21T10:40:04,736 versions. Please use the underscore name 'python_tag' instead. 2024-08-21T10:40:04,737 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-08-21T10:40:04,738 or your builds will no longer be supported. 2024-08-21T10:40:04,739 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-08-21T10:40:04,739 ******************************************************************************** 2024-08-21T10:40:04,741 !! 2024-08-21T10:40:04,741 opt = self.warn_dash_deprecation(opt, section) 2024-08-21T10:40:05,278 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-08-21T10:40:05,279 !! 2024-08-21T10:40:05,280 ******************************************************************************** 2024-08-21T10:40:05,280 Usage of dash-separated 'python-tag' will not be supported in future 2024-08-21T10:40:05,281 versions. Please use the underscore name 'python_tag' instead. 2024-08-21T10:40:05,282 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-08-21T10:40:05,283 or your builds will no longer be supported. 2024-08-21T10:40:05,284 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-08-21T10:40:05,284 ******************************************************************************** 2024-08-21T10:40:05,285 !! 2024-08-21T10:40:05,286 opt = self.warn_dash_deprecation(opt, section) 2024-08-21T10:40:05,322 running egg_info 2024-08-21T10:40:05,324 creating /tmp/pip-pip-egg-info-y4x5ldn0/cami_amber.egg-info 2024-08-21T10:40:05,350 writing /tmp/pip-pip-egg-info-y4x5ldn0/cami_amber.egg-info/PKG-INFO 2024-08-21T10:40:05,353 writing dependency_links to /tmp/pip-pip-egg-info-y4x5ldn0/cami_amber.egg-info/dependency_links.txt 2024-08-21T10:40:05,355 writing requirements to /tmp/pip-pip-egg-info-y4x5ldn0/cami_amber.egg-info/requires.txt 2024-08-21T10:40:05,356 writing top-level names to /tmp/pip-pip-egg-info-y4x5ldn0/cami_amber.egg-info/top_level.txt 2024-08-21T10:40:05,358 writing manifest file '/tmp/pip-pip-egg-info-y4x5ldn0/cami_amber.egg-info/SOURCES.txt' 2024-08-21T10:40:05,474 reading manifest file '/tmp/pip-pip-egg-info-y4x5ldn0/cami_amber.egg-info/SOURCES.txt' 2024-08-21T10:40:05,475 reading manifest template 'MANIFEST.in' 2024-08-21T10:40:05,476 adding license file 'LICENSE' 2024-08-21T10:40:05,479 writing manifest file '/tmp/pip-pip-egg-info-y4x5ldn0/cami_amber.egg-info/SOURCES.txt' 2024-08-21T10:40:05,591 Preparing metadata (setup.py): finished with status 'done' 2024-08-21T10:40:05,595 Source in /tmp/pip-wheel-dhyiodmr/cami-amber_41dc533e705642b1acbe91d6601d8b89 has version 2.0.5, which satisfies requirement cami-amber==2.0.5 from https://files.pythonhosted.org/packages/ea/69/a93fdeb73dff7b88b61c774c783a05befd1861cdcd4abecb67c6becd37b0/cami-amber-2.0.5.tar.gz 2024-08-21T10:40:05,596 Removed cami-amber==2.0.5 from https://files.pythonhosted.org/packages/ea/69/a93fdeb73dff7b88b61c774c783a05befd1861cdcd4abecb67c6becd37b0/cami-amber-2.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-0xnbbhpt' 2024-08-21T10:40:05,602 Created temporary directory: /tmp/pip-unpack-_j_zfype 2024-08-21T10:40:05,603 Created temporary directory: /tmp/pip-unpack-x2_fesyv 2024-08-21T10:40:05,603 Building wheels for collected packages: cami-amber 2024-08-21T10:40:05,607 Created temporary directory: /tmp/pip-wheel-81ptltue 2024-08-21T10:40:05,608 Building wheel for cami-amber (setup.py): started 2024-08-21T10:40:05,609 Destination directory: /tmp/pip-wheel-81ptltue 2024-08-21T10:40:05,610 Running command python setup.py bdist_wheel 2024-08-21T10:40:06,129 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-08-21T10:40:06,130 !! 2024-08-21T10:40:06,131 ******************************************************************************** 2024-08-21T10:40:06,131 Usage of dash-separated 'python-tag' will not be supported in future 2024-08-21T10:40:06,132 versions. Please use the underscore name 'python_tag' instead. 2024-08-21T10:40:06,133 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-08-21T10:40:06,134 or your builds will no longer be supported. 2024-08-21T10:40:06,135 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-08-21T10:40:06,135 ******************************************************************************** 2024-08-21T10:40:06,137 !! 2024-08-21T10:40:06,137 opt = self.warn_dash_deprecation(opt, section) 2024-08-21T10:40:06,664 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-08-21T10:40:06,665 !! 2024-08-21T10:40:06,666 ******************************************************************************** 2024-08-21T10:40:06,666 Usage of dash-separated 'python-tag' will not be supported in future 2024-08-21T10:40:06,666 versions. Please use the underscore name 'python_tag' instead. 2024-08-21T10:40:06,668 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-08-21T10:40:06,668 or your builds will no longer be supported. 2024-08-21T10:40:06,669 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-08-21T10:40:06,670 ******************************************************************************** 2024-08-21T10:40:06,671 !! 2024-08-21T10:40:06,672 opt = self.warn_dash_deprecation(opt, section) 2024-08-21T10:40:06,676 running bdist_wheel 2024-08-21T10:40:06,814 running build 2024-08-21T10:40:06,815 running build_py 2024-08-21T10:40:06,846 creating build 2024-08-21T10:40:06,846 creating build/lib 2024-08-21T10:40:06,847 creating build/lib/cami_amber 2024-08-21T10:40:06,848 copying cami_amber/plot_by_genome.py -> build/lib/cami_amber 2024-08-21T10:40:06,850 copying cami_amber/plots.py -> build/lib/cami_amber 2024-08-21T10:40:06,853 copying cami_amber/amber_html.py -> build/lib/cami_amber 2024-08-21T10:40:06,857 copying cami_amber/__init__.py -> build/lib/cami_amber 2024-08-21T10:40:06,858 copying cami_amber/binning_classes.py -> build/lib/cami_amber 2024-08-21T10:40:06,862 copying cami_amber/unifrac_distance.py -> build/lib/cami_amber 2024-08-21T10:40:06,864 copying cami_amber/precision_recall_per_bin.py -> build/lib/cami_amber 2024-08-21T10:40:06,866 copying cami_amber/evaluate.py -> build/lib/cami_amber 2024-08-21T10:40:06,868 creating build/lib/cami_amber/utils 2024-08-21T10:40:06,869 copying cami_amber/utils/argparse_parents.py -> build/lib/cami_amber/utils 2024-08-21T10:40:06,871 copying cami_amber/utils/load_data.py -> build/lib/cami_amber/utils 2024-08-21T10:40:06,873 copying cami_amber/utils/test.py -> build/lib/cami_amber/utils 2024-08-21T10:40:06,875 copying cami_amber/utils/convert_fasta_bins_to_biobox_format.py -> build/lib/cami_amber/utils 2024-08-21T10:40:06,877 copying cami_amber/utils/__init__.py -> build/lib/cami_amber/utils 2024-08-21T10:40:06,879 copying cami_amber/utils/add_length_column.py -> build/lib/cami_amber/utils 2024-08-21T10:40:06,881 copying cami_amber/utils/EMDUnifrac.py -> build/lib/cami_amber/utils 2024-08-21T10:40:06,883 copying cami_amber/utils/labels.py -> build/lib/cami_amber/utils 2024-08-21T10:40:06,885 copying cami_amber/utils/ProfilingTools.py -> build/lib/cami_amber/utils 2024-08-21T10:40:06,887 copying cami_amber/utils/load_ncbi_taxinfo.py -> build/lib/cami_amber/utils 2024-08-21T10:40:06,892 running build_scripts 2024-08-21T10:40:06,893 creating build/scripts-3.11 2024-08-21T10:40:06,893 copying and adjusting amber.py -> build/scripts-3.11 2024-08-21T10:40:06,896 copying version.py -> build/scripts-3.11 2024-08-21T10:40:06,898 copying setup.py -> build/scripts-3.11 2024-08-21T10:40:06,900 changing mode of build/scripts-3.11/amber.py from 644 to 755 2024-08-21T10:40:06,900 changing mode of build/scripts-3.11/version.py from 644 to 755 2024-08-21T10:40:06,901 changing mode of build/scripts-3.11/setup.py from 644 to 755 2024-08-21T10:40:06,929 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-08-21T10:40:06,930 !! 2024-08-21T10:40:06,970 ******************************************************************************** 2024-08-21T10:40:06,970 Please avoid running ``setup.py`` directly. 2024-08-21T10:40:06,971 Instead, use pypa/build, pypa/installer or other 2024-08-21T10:40:06,972 standards-based tools. 2024-08-21T10:40:06,973 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-08-21T10:40:06,973 ******************************************************************************** 2024-08-21T10:40:06,975 !! 2024-08-21T10:40:06,975 self.initialize_options() 2024-08-21T10:40:06,999 installing to build/bdist.linux-armv7l/wheel 2024-08-21T10:40:07,000 running install 2024-08-21T10:40:07,025 running install_lib 2024-08-21T10:40:07,053 creating build/bdist.linux-armv7l 2024-08-21T10:40:07,054 creating build/bdist.linux-armv7l/wheel 2024-08-21T10:40:07,056 creating build/bdist.linux-armv7l/wheel/cami_amber 2024-08-21T10:40:07,057 copying build/lib/cami_amber/plot_by_genome.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-21T10:40:07,059 copying build/lib/cami_amber/plots.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-21T10:40:07,062 copying build/lib/cami_amber/amber_html.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-21T10:40:07,065 copying build/lib/cami_amber/__init__.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-21T10:40:07,067 creating build/bdist.linux-armv7l/wheel/cami_amber/utils 2024-08-21T10:40:07,068 copying build/lib/cami_amber/utils/argparse_parents.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-21T10:40:07,071 copying build/lib/cami_amber/utils/load_data.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-21T10:40:07,073 copying build/lib/cami_amber/utils/test.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-21T10:40:07,075 copying build/lib/cami_amber/utils/convert_fasta_bins_to_biobox_format.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-21T10:40:07,077 copying build/lib/cami_amber/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-21T10:40:07,078 copying build/lib/cami_amber/utils/add_length_column.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-21T10:40:07,080 copying build/lib/cami_amber/utils/EMDUnifrac.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-21T10:40:07,082 copying build/lib/cami_amber/utils/labels.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-21T10:40:07,085 copying build/lib/cami_amber/utils/ProfilingTools.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-21T10:40:07,087 copying build/lib/cami_amber/utils/load_ncbi_taxinfo.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-21T10:40:07,089 copying build/lib/cami_amber/binning_classes.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-21T10:40:07,092 copying build/lib/cami_amber/unifrac_distance.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-21T10:40:07,094 copying build/lib/cami_amber/precision_recall_per_bin.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-21T10:40:07,096 copying build/lib/cami_amber/evaluate.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-21T10:40:07,098 running install_egg_info 2024-08-21T10:40:07,131 running egg_info 2024-08-21T10:40:07,157 writing cami_amber.egg-info/PKG-INFO 2024-08-21T10:40:07,161 writing dependency_links to cami_amber.egg-info/dependency_links.txt 2024-08-21T10:40:07,162 writing requirements to cami_amber.egg-info/requires.txt 2024-08-21T10:40:07,164 writing top-level names to cami_amber.egg-info/top_level.txt 2024-08-21T10:40:07,194 reading manifest file 'cami_amber.egg-info/SOURCES.txt' 2024-08-21T10:40:07,198 reading manifest template 'MANIFEST.in' 2024-08-21T10:40:07,199 adding license file 'LICENSE' 2024-08-21T10:40:07,201 writing manifest file 'cami_amber.egg-info/SOURCES.txt' 2024-08-21T10:40:07,203 Copying cami_amber.egg-info to build/bdist.linux-armv7l/wheel/./cami_amber-2.0.5-py3.11.egg-info 2024-08-21T10:40:07,213 running install_scripts 2024-08-21T10:40:07,214 creating build/bdist.linux-armv7l/wheel/cami_amber-2.0.5.data 2024-08-21T10:40:07,215 creating build/bdist.linux-armv7l/wheel/cami_amber-2.0.5.data/scripts 2024-08-21T10:40:07,216 copying build/scripts-3.11/amber.py -> build/bdist.linux-armv7l/wheel/cami_amber-2.0.5.data/scripts 2024-08-21T10:40:07,218 copying build/scripts-3.11/version.py -> build/bdist.linux-armv7l/wheel/cami_amber-2.0.5.data/scripts 2024-08-21T10:40:07,220 copying build/scripts-3.11/setup.py -> build/bdist.linux-armv7l/wheel/cami_amber-2.0.5.data/scripts 2024-08-21T10:40:07,221 changing mode of build/bdist.linux-armv7l/wheel/cami_amber-2.0.5.data/scripts/amber.py to 755 2024-08-21T10:40:07,222 changing mode of build/bdist.linux-armv7l/wheel/cami_amber-2.0.5.data/scripts/version.py to 755 2024-08-21T10:40:07,222 changing mode of build/bdist.linux-armv7l/wheel/cami_amber-2.0.5.data/scripts/setup.py to 755 2024-08-21T10:40:07,238 creating build/bdist.linux-armv7l/wheel/cami_amber-2.0.5.dist-info/WHEEL 2024-08-21T10:40:07,240 creating '/tmp/pip-wheel-81ptltue/cami_amber-2.0.5-py311-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-08-21T10:40:07,243 adding 'cami_amber/__init__.py' 2024-08-21T10:40:07,247 adding 'cami_amber/amber_html.py' 2024-08-21T10:40:07,252 adding 'cami_amber/binning_classes.py' 2024-08-21T10:40:07,254 adding 'cami_amber/evaluate.py' 2024-08-21T10:40:07,255 adding 'cami_amber/plot_by_genome.py' 2024-08-21T10:40:07,258 adding 'cami_amber/plots.py' 2024-08-21T10:40:07,260 adding 'cami_amber/precision_recall_per_bin.py' 2024-08-21T10:40:07,262 adding 'cami_amber/unifrac_distance.py' 2024-08-21T10:40:07,263 adding 'cami_amber/utils/EMDUnifrac.py' 2024-08-21T10:40:07,266 adding 'cami_amber/utils/ProfilingTools.py' 2024-08-21T10:40:07,267 adding 'cami_amber/utils/__init__.py' 2024-08-21T10:40:07,269 adding 'cami_amber/utils/add_length_column.py' 2024-08-21T10:40:07,270 adding 'cami_amber/utils/argparse_parents.py' 2024-08-21T10:40:07,271 adding 'cami_amber/utils/convert_fasta_bins_to_biobox_format.py' 2024-08-21T10:40:07,273 adding 'cami_amber/utils/labels.py' 2024-08-21T10:40:07,275 adding 'cami_amber/utils/load_data.py' 2024-08-21T10:40:07,277 adding 'cami_amber/utils/load_ncbi_taxinfo.py' 2024-08-21T10:40:07,278 adding 'cami_amber/utils/test.py' 2024-08-21T10:40:07,281 adding 'cami_amber-2.0.5.data/scripts/amber.py' 2024-08-21T10:40:07,282 adding 'cami_amber-2.0.5.data/scripts/setup.py' 2024-08-21T10:40:07,283 adding 'cami_amber-2.0.5.data/scripts/version.py' 2024-08-21T10:40:07,290 adding 'cami_amber-2.0.5.dist-info/LICENSE' 2024-08-21T10:40:07,291 adding 'cami_amber-2.0.5.dist-info/METADATA' 2024-08-21T10:40:07,292 adding 'cami_amber-2.0.5.dist-info/WHEEL' 2024-08-21T10:40:07,293 adding 'cami_amber-2.0.5.dist-info/top_level.txt' 2024-08-21T10:40:07,294 adding 'cami_amber-2.0.5.dist-info/RECORD' 2024-08-21T10:40:07,297 removing build/bdist.linux-armv7l/wheel 2024-08-21T10:40:07,418 Building wheel for cami-amber (setup.py): finished with status 'done' 2024-08-21T10:40:07,422 Created wheel for cami-amber: filename=cami_amber-2.0.5-py311-none-any.whl size=67940 sha256=3fa1d8f6c550d0a2e18589919d10512f18034b7cc88d3b6b00249c79a503856d 2024-08-21T10:40:07,423 Stored in directory: /tmp/pip-ephem-wheel-cache-si9g_rdl/wheels/88/58/5e/86600540a43a7c0fb864e34bc63e1eab28f7733d279e6d1699 2024-08-21T10:40:07,434 Successfully built cami-amber 2024-08-21T10:40:07,440 Removed build tracker: '/tmp/pip-build-tracker-0xnbbhpt'