2024-08-26T10:53:31,899 Created temporary directory: /tmp/pip-build-tracker-6ejw2r4m 2024-08-26T10:53:31,900 Initialized build tracking at /tmp/pip-build-tracker-6ejw2r4m 2024-08-26T10:53:31,900 Created build tracker: /tmp/pip-build-tracker-6ejw2r4m 2024-08-26T10:53:31,901 Entered build tracker: /tmp/pip-build-tracker-6ejw2r4m 2024-08-26T10:53:31,902 Created temporary directory: /tmp/pip-wheel-bgkptgxh 2024-08-26T10:53:31,905 Created temporary directory: /tmp/pip-ephem-wheel-cache-x8ph9gfj 2024-08-26T10:53:31,947 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-08-26T10:53:31,950 2 location(s) to search for versions of stcat: 2024-08-26T10:53:31,950 * https://pypi.org/simple/stcat/ 2024-08-26T10:53:31,950 * https://www.piwheels.org/simple/stcat/ 2024-08-26T10:53:31,951 Fetching project page and analyzing links: https://pypi.org/simple/stcat/ 2024-08-26T10:53:31,952 Getting page https://pypi.org/simple/stcat/ 2024-08-26T10:53:31,953 Found index url https://pypi.org/simple/ 2024-08-26T10:53:32,169 Fetched page https://pypi.org/simple/stcat/ as application/vnd.pypi.simple.v1+json 2024-08-26T10:53:32,173 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/dd/d9/7509763cc9a3235091c79b0b4a3a9a415f7b643a68593550ab533d06677d/STCAT-0.2-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,174 Found link https://files.pythonhosted.org/packages/54/ff/46d805ee24659e6c5896441d6a58a39f48af44e54ab5496acf66a564fbc2/STCAT-0.2.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.2 2024-08-26T10:53:32,174 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/a1/c2/622b9f058b24687ff867af676fe1a228e5ce888299d80fb946f23947d90b/STCAT-0.3-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,175 Found link https://files.pythonhosted.org/packages/0a/80/6f95d103fabcc905d1f3752b8df72f6f94bbee03d856fea3b87d6734399e/STCAT-0.3.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.3 2024-08-26T10:53:32,176 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/00/9f/c43fc909bbaa04cc23ab22dce4347ba97041c75509b1ad05cb32208af304/STCAT-0.3.1-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,177 Found link https://files.pythonhosted.org/packages/3d/85/26de4a35d00621ab453aec285423cd2d8dcd8894aed6c104efd051548eb2/STCAT-0.3.1.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.3.1 2024-08-26T10:53:32,178 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/82/30/81637812215bbf231cfcde640e3e9b6d9c2f03ca047ee35e4da2f00451ef/STCAT-0.4-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,179 Found link https://files.pythonhosted.org/packages/b1/2c/d5c45eed6a58face4a30c3d86a73f9ecf36428a3c1dba4e8261ee8b49491/STCAT-0.4.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.4 2024-08-26T10:53:32,180 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/c0/e2/4eb4ba85784764e9f06ff3e3ea3984483797409d9dbb78bac2bc72aefcda/STCAT-0.5-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,180 Found link https://files.pythonhosted.org/packages/63/4b/4c69ba9d101bddf6c744e6b95d7dd1baf70bfdca8f35d5d3d699286c9818/STCAT-0.5.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.5 2024-08-26T10:53:32,181 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/e7/b2/b1b8e75f6dcec052813774bb57b7acb1a6c936c7d63fcb679479a18316be/STCAT-0.6-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,182 Found link https://files.pythonhosted.org/packages/7d/7b/87a75714b463c728a46c3327292c2d1d015c9d5bf420211e3ecffd2181fd/STCAT-0.6.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.6 2024-08-26T10:53:32,183 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/bb/04/4e60aa6ddde3e86b780dd955f7980b3928714e59fa1190456067fac03224/STCAT-0.6.1-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,184 Found link https://files.pythonhosted.org/packages/4d/7c/e989750544d252dd9381db0fe51911b5087ed59d46e531feb3da93bc9a53/STCAT-0.6.1.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.6.1 2024-08-26T10:53:32,185 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/f7/aa/aec1a2924c470e9e7ea6925e25a58032f71bbbb26e41af31d26aa894aa12/STCAT-0.7-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,185 Found link https://files.pythonhosted.org/packages/12/f7/f2b07b434451163a1761aa8a8ea1843847cff979143f65727fffe7df88ea/STCAT-0.7.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.7 2024-08-26T10:53:32,186 Fetching project page and analyzing links: https://www.piwheels.org/simple/stcat/ 2024-08-26T10:53:32,187 Getting page https://www.piwheels.org/simple/stcat/ 2024-08-26T10:53:32,188 Found index url https://www.piwheels.org/simple/ 2024-08-26T10:53:32,345 Fetched page https://www.piwheels.org/simple/stcat/ as text/html 2024-08-26T10:53:32,348 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.6.1-py3-none-any.whl#sha256=891d77af24be86751f576bb169f2f9ce00f96953f955fed43faa845417723e89 (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,349 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.6-py3-none-any.whl#sha256=6e886c594327fbcd34c1bb9fba6c23b3712cd50b3fbb795ee9d19a785074eb05 (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,349 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.5-py3-none-any.whl#sha256=129d56f002bc386b4039e47de1ecdf4ec194e05e74b03e72f35c4fbbf6003229 (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,350 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.4-py3-none-any.whl#sha256=1fc9535179dab13c6c61b1b6e2fcd1bd257776472eb6c91d94140ae9d3194adb (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,351 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.3.1-py3-none-any.whl#sha256=9222fb8e2c8a9b3ced6fcf927634943d0a8ff963cf28ca70f0f85907bb76dcf2 (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,351 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.3-py3-none-any.whl#sha256=09afd386b49d2f718b124e55b00afc7b12430010014558c7d7df34f006324d19 (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,352 Skipping link: No binaries permitted for stcat: https://www.piwheels.org/simple/stcat/STCAT-0.2-py3-none-any.whl#sha256=faf26d207bd572f5fad92b52dcd16f0d45056fa51631366657ba80adc9e9f1ff (from https://www.piwheels.org/simple/stcat/) (requires-python:>=3.8) 2024-08-26T10:53:32,352 Skipping link: not a file: https://www.piwheels.org/simple/stcat/ 2024-08-26T10:53:32,353 Skipping link: not a file: https://pypi.org/simple/stcat/ 2024-08-26T10:53:32,371 Given no hashes to check 1 links for project 'stcat': discarding no candidates 2024-08-26T10:53:32,373 Collecting stcat==0.7 2024-08-26T10:53:32,375 Created temporary directory: /tmp/pip-unpack-vcm2r0ps 2024-08-26T10:53:32,600 Downloading STCAT-0.7.tar.gz (1.6 MB) 2024-08-26T10:53:32,977 Added stcat==0.7 from https://files.pythonhosted.org/packages/12/f7/f2b07b434451163a1761aa8a8ea1843847cff979143f65727fffe7df88ea/STCAT-0.7.tar.gz to build tracker '/tmp/pip-build-tracker-6ejw2r4m' 2024-08-26T10:53:32,979 Running setup.py (path:/tmp/pip-wheel-bgkptgxh/stcat_7062ba9ffcdc45a38a504782483e79c6/setup.py) egg_info for package stcat 2024-08-26T10:53:32,980 Created temporary directory: /tmp/pip-pip-egg-info-wzjld37n 2024-08-26T10:53:32,981 Preparing metadata (setup.py): started 2024-08-26T10:53:32,982 Running command python setup.py egg_info 2024-08-26T10:53:34,079 running egg_info 2024-08-26T10:53:34,080 creating /tmp/pip-pip-egg-info-wzjld37n/STCAT.egg-info 2024-08-26T10:53:34,107 writing /tmp/pip-pip-egg-info-wzjld37n/STCAT.egg-info/PKG-INFO 2024-08-26T10:53:34,110 writing dependency_links to /tmp/pip-pip-egg-info-wzjld37n/STCAT.egg-info/dependency_links.txt 2024-08-26T10:53:34,112 writing requirements to /tmp/pip-pip-egg-info-wzjld37n/STCAT.egg-info/requires.txt 2024-08-26T10:53:34,113 writing top-level names to /tmp/pip-pip-egg-info-wzjld37n/STCAT.egg-info/top_level.txt 2024-08-26T10:53:34,115 writing manifest file '/tmp/pip-pip-egg-info-wzjld37n/STCAT.egg-info/SOURCES.txt' 2024-08-26T10:53:34,200 reading manifest file '/tmp/pip-pip-egg-info-wzjld37n/STCAT.egg-info/SOURCES.txt' 2024-08-26T10:53:34,202 reading manifest template 'MANIFEST.in' 2024-08-26T10:53:34,207 writing manifest file '/tmp/pip-pip-egg-info-wzjld37n/STCAT.egg-info/SOURCES.txt' 2024-08-26T10:53:34,319 Preparing metadata (setup.py): finished with status 'done' 2024-08-26T10:53:34,323 Source in /tmp/pip-wheel-bgkptgxh/stcat_7062ba9ffcdc45a38a504782483e79c6 has version 0.7, which satisfies requirement stcat==0.7 from https://files.pythonhosted.org/packages/12/f7/f2b07b434451163a1761aa8a8ea1843847cff979143f65727fffe7df88ea/STCAT-0.7.tar.gz 2024-08-26T10:53:34,324 Removed stcat==0.7 from https://files.pythonhosted.org/packages/12/f7/f2b07b434451163a1761aa8a8ea1843847cff979143f65727fffe7df88ea/STCAT-0.7.tar.gz from build tracker '/tmp/pip-build-tracker-6ejw2r4m' 2024-08-26T10:53:34,331 Created temporary directory: /tmp/pip-unpack-1dxgm5c4 2024-08-26T10:53:34,332 Created temporary directory: /tmp/pip-unpack-zinli796 2024-08-26T10:53:34,332 Building wheels for collected packages: stcat 2024-08-26T10:53:34,336 Created temporary directory: /tmp/pip-wheel-syzpy_8k 2024-08-26T10:53:34,337 Building wheel for stcat (setup.py): started 2024-08-26T10:53:34,338 Destination directory: /tmp/pip-wheel-syzpy_8k 2024-08-26T10:53:34,339 Running command python setup.py bdist_wheel 2024-08-26T10:53:35,425 running bdist_wheel 2024-08-26T10:53:35,564 running build 2024-08-26T10:53:35,565 running build_py 2024-08-26T10:53:35,596 creating build 2024-08-26T10:53:35,597 creating build/lib 2024-08-26T10:53:35,597 creating build/lib/STCAT 2024-08-26T10:53:35,599 copying STCAT/__init__.py -> build/lib/STCAT 2024-08-26T10:53:35,601 copying STCAT/logger.py -> build/lib/STCAT 2024-08-26T10:53:35,602 copying STCAT/classifier.py -> build/lib/STCAT 2024-08-26T10:53:35,605 copying STCAT/annotate.py -> build/lib/STCAT 2024-08-26T10:53:35,608 copying STCAT/STCAT.py -> build/lib/STCAT 2024-08-26T10:53:35,610 copying STCAT/models.py -> build/lib/STCAT 2024-08-26T10:53:35,612 running egg_info 2024-08-26T10:53:35,639 writing STCAT.egg-info/PKG-INFO 2024-08-26T10:53:35,642 writing dependency_links to STCAT.egg-info/dependency_links.txt 2024-08-26T10:53:35,644 writing requirements to STCAT.egg-info/requires.txt 2024-08-26T10:53:35,645 writing top-level names to STCAT.egg-info/top_level.txt 2024-08-26T10:53:35,676 reading manifest file 'STCAT.egg-info/SOURCES.txt' 2024-08-26T10:53:35,678 reading manifest template 'MANIFEST.in' 2024-08-26T10:53:35,683 writing manifest file 'STCAT.egg-info/SOURCES.txt' 2024-08-26T10:53:35,686 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'STCAT.data' is absent from the `packages` configuration. 2024-08-26T10:53:35,686 !! 2024-08-26T10:53:35,688 ******************************************************************************** 2024-08-26T10:53:35,688 ############################ 2024-08-26T10:53:35,689 # Package would be ignored # 2024-08-26T10:53:35,689 ############################ 2024-08-26T10:53:35,690 Python recognizes 'STCAT.data' as an importable package[^1], 2024-08-26T10:53:35,690 but it is absent from setuptools' `packages` configuration. 2024-08-26T10:53:35,691 This leads to an ambiguous overall configuration. If you want to distribute this 2024-08-26T10:53:35,692 package, please make sure that 'STCAT.data' is explicitly added 2024-08-26T10:53:35,692 to the `packages` configuration field. 2024-08-26T10:53:35,693 Alternatively, you can also rely on setuptools' discovery methods 2024-08-26T10:53:35,694 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-08-26T10:53:35,694 instead of `find_packages(...)`/`find:`). 2024-08-26T10:53:35,695 You can read more about "package discovery" on setuptools documentation page: 2024-08-26T10:53:35,696 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-08-26T10:53:35,696 If you don't want 'STCAT.data' to be distributed and are 2024-08-26T10:53:35,697 already explicitly excluding 'STCAT.data' via 2024-08-26T10:53:35,698 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-08-26T10:53:35,698 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-08-26T10:53:35,699 combination with a more fine grained `package-data` configuration. 2024-08-26T10:53:35,709 You can read more about "package data files" on setuptools documentation page: 2024-08-26T10:53:35,711 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-08-26T10:53:35,712 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-08-26T10:53:35,713 even if it does not contain any `.py` files. 2024-08-26T10:53:35,714 On the other hand, currently there is no concept of package data 2024-08-26T10:53:35,714 directory, all directories are treated like packages. 2024-08-26T10:53:35,715 ******************************************************************************** 2024-08-26T10:53:35,717 !! 2024-08-26T10:53:35,719 check.warn(importable) 2024-08-26T10:53:35,722 creating build/lib/STCAT/data 2024-08-26T10:53:35,723 copying STCAT/data/T_cell.pkl -> build/lib/STCAT/data 2024-08-26T10:53:35,724 copying STCAT/data/cd4.pkl -> build/lib/STCAT/data 2024-08-26T10:53:35,725 copying STCAT/data/cd8.pkl -> build/lib/STCAT/data 2024-08-26T10:53:35,731 copying STCAT/data/marker_CD4.txt -> build/lib/STCAT/data 2024-08-26T10:53:35,734 copying STCAT/data/marker_CD8.txt -> build/lib/STCAT/data 2024-08-26T10:53:35,762 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-08-26T10:53:35,763 !! 2024-08-26T10:53:35,764 ******************************************************************************** 2024-08-26T10:53:35,765 Please avoid running ``setup.py`` directly. 2024-08-26T10:53:35,765 Instead, use pypa/build, pypa/installer or other 2024-08-26T10:53:35,766 standards-based tools. 2024-08-26T10:53:35,767 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-08-26T10:53:35,768 ******************************************************************************** 2024-08-26T10:53:35,769 !! 2024-08-26T10:53:35,770 self.initialize_options() 2024-08-26T10:53:35,790 installing to build/bdist.linux-armv7l/wheel 2024-08-26T10:53:35,790 running install 2024-08-26T10:53:35,814 running install_lib 2024-08-26T10:53:35,840 creating build/bdist.linux-armv7l 2024-08-26T10:53:35,841 creating build/bdist.linux-armv7l/wheel 2024-08-26T10:53:35,842 creating build/bdist.linux-armv7l/wheel/STCAT 2024-08-26T10:53:35,844 copying build/lib/STCAT/__init__.py -> build/bdist.linux-armv7l/wheel/./STCAT 2024-08-26T10:53:35,846 copying build/lib/STCAT/logger.py -> build/bdist.linux-armv7l/wheel/./STCAT 2024-08-26T10:53:35,848 creating build/bdist.linux-armv7l/wheel/STCAT/data 2024-08-26T10:53:35,849 copying build/lib/STCAT/data/cd8.pkl -> build/bdist.linux-armv7l/wheel/./STCAT/data 2024-08-26T10:53:35,855 copying build/lib/STCAT/data/cd4.pkl -> build/bdist.linux-armv7l/wheel/./STCAT/data 2024-08-26T10:53:35,865 copying build/lib/STCAT/data/marker_CD8.txt -> build/bdist.linux-armv7l/wheel/./STCAT/data 2024-08-26T10:53:35,867 copying build/lib/STCAT/data/T_cell.pkl -> build/bdist.linux-armv7l/wheel/./STCAT/data 2024-08-26T10:53:35,884 copying build/lib/STCAT/data/marker_CD4.txt -> build/bdist.linux-armv7l/wheel/./STCAT/data 2024-08-26T10:53:35,887 copying build/lib/STCAT/classifier.py -> build/bdist.linux-armv7l/wheel/./STCAT 2024-08-26T10:53:35,889 copying build/lib/STCAT/annotate.py -> build/bdist.linux-armv7l/wheel/./STCAT 2024-08-26T10:53:35,891 copying build/lib/STCAT/STCAT.py -> build/bdist.linux-armv7l/wheel/./STCAT 2024-08-26T10:53:35,893 copying build/lib/STCAT/models.py -> build/bdist.linux-armv7l/wheel/./STCAT 2024-08-26T10:53:35,895 running install_egg_info 2024-08-26T10:53:35,928 Copying STCAT.egg-info to build/bdist.linux-armv7l/wheel/./STCAT-0.7-py3.11.egg-info 2024-08-26T10:53:35,937 running install_scripts 2024-08-26T10:53:35,950 creating build/bdist.linux-armv7l/wheel/STCAT-0.7.dist-info/WHEEL 2024-08-26T10:53:35,952 creating '/tmp/pip-wheel-syzpy_8k/STCAT-0.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-08-26T10:53:35,955 adding 'STCAT/STCAT.py' 2024-08-26T10:53:35,957 adding 'STCAT/__init__.py' 2024-08-26T10:53:35,958 adding 'STCAT/annotate.py' 2024-08-26T10:53:35,962 adding 'STCAT/classifier.py' 2024-08-26T10:53:35,963 adding 'STCAT/logger.py' 2024-08-26T10:53:35,965 adding 'STCAT/models.py' 2024-08-26T10:53:36,108 adding 'STCAT/data/T_cell.pkl' 2024-08-26T10:53:36,194 adding 'STCAT/data/cd4.pkl' 2024-08-26T10:53:36,235 adding 'STCAT/data/cd8.pkl' 2024-08-26T10:53:36,238 adding 'STCAT/data/marker_CD4.txt' 2024-08-26T10:53:36,240 adding 'STCAT/data/marker_CD8.txt' 2024-08-26T10:53:36,242 adding 'STCAT-0.7.dist-info/METADATA' 2024-08-26T10:53:36,243 adding 'STCAT-0.7.dist-info/WHEEL' 2024-08-26T10:53:36,244 adding 'STCAT-0.7.dist-info/top_level.txt' 2024-08-26T10:53:36,244 adding 'STCAT-0.7.dist-info/RECORD' 2024-08-26T10:53:36,270 removing build/bdist.linux-armv7l/wheel 2024-08-26T10:53:36,390 Building wheel for stcat (setup.py): finished with status 'done' 2024-08-26T10:53:36,409 Created wheel for stcat: filename=STCAT-0.7-py3-none-any.whl size=1645268 sha256=4f31779842c4da000cba5d9298ad7a4815d4e5c372a3ac7af6820f37495d79ec 2024-08-26T10:53:36,410 Stored in directory: /tmp/pip-ephem-wheel-cache-x8ph9gfj/wheels/0c/dc/3a/a4981b0800ea62faeef87aef53bf5ff77629cf491abdcae176 2024-08-26T10:53:36,420 Successfully built stcat 2024-08-26T10:53:36,475 Removed build tracker: '/tmp/pip-build-tracker-6ejw2r4m'