2024-08-26T17:05:45,538 Created temporary directory: /tmp/pip-build-tracker-z8vc1be2 2024-08-26T17:05:45,539 Initialized build tracking at /tmp/pip-build-tracker-z8vc1be2 2024-08-26T17:05:45,540 Created build tracker: /tmp/pip-build-tracker-z8vc1be2 2024-08-26T17:05:45,540 Entered build tracker: /tmp/pip-build-tracker-z8vc1be2 2024-08-26T17:05:45,541 Created temporary directory: /tmp/pip-wheel-bmqi1ep9 2024-08-26T17:05:45,545 Created temporary directory: /tmp/pip-ephem-wheel-cache-h2fecu50 2024-08-26T17:05:45,588 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-08-26T17:05:45,590 2 location(s) to search for versions of cami-amber: 2024-08-26T17:05:45,590 * https://pypi.org/simple/cami-amber/ 2024-08-26T17:05:45,590 * https://www.piwheels.org/simple/cami-amber/ 2024-08-26T17:05:45,591 Fetching project page and analyzing links: https://pypi.org/simple/cami-amber/ 2024-08-26T17:05:45,592 Getting page https://pypi.org/simple/cami-amber/ 2024-08-26T17:05:45,594 Found index url https://pypi.org/simple/ 2024-08-26T17:05:45,811 Fetched page https://pypi.org/simple/cami-amber/ as application/vnd.pypi.simple.v1+json 2024-08-26T17:05:45,817 Found link https://files.pythonhosted.org/packages/23/68/3511524dda2de993f8613d26b6319bcd2b2ee4f215ae00b82b73d1e9c2b8/cami-amber-0.7.0.tar.gz (from https://pypi.org/simple/cami-amber/), version: 0.7.0 2024-08-26T17:05:45,818 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/22/05/b36682e0f8ac5378baa3c0570a4b5f6c49071f146c75eb42f49392d3394e/cami_amber-0.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,818 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/63/e0/0d76574bcf28b4c2c5e43fc34d018431c74ec9677a1340275d4cbb67c5f4/cami_amber-0.7.0-py35-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,819 Found link https://files.pythonhosted.org/packages/2c/13/b2f7d53fbcf883c6d121e76cec1a654579816a9cda3bc1a5b93c71db81b9/cami-amber-0.7.1.tar.gz (from https://pypi.org/simple/cami-amber/), version: 0.7.1 2024-08-26T17:05:45,820 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/1e/94/c31d7bebf94978fcf15531d2086e7a5760a3af68461b317b10e63fc16f84/cami_amber-0.7.1-py35-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,821 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c1/a8/992d55b11fc2e246d2de1a721a8a9e3655ca537812eef8e7e9c886343ce6/cami_amber-1.0-py3.5.egg (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,821 Found link https://files.pythonhosted.org/packages/02/85/476777c88755019c2b6b009f3fab68eb5236aa7cb6e4e5b6ce5eaf380b9d/cami-amber-1.0.1.tar.gz (from https://pypi.org/simple/cami-amber/), version: 1.0.1 2024-08-26T17:05:45,822 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/49/fd/8f04d84405ec570ef5a59d794fa66712fe11049f38fb68e39b8e9d0e3c31/cami_amber-1.0.1-py35-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,823 Found link https://files.pythonhosted.org/packages/8a/eb/1b0f9582223a15ca9f1f53fb570cd3c9022a2d7fc5eab35538a6dce73cd2/cami-amber-1.0.2.tar.gz (from https://pypi.org/simple/cami-amber/), version: 1.0.2 2024-08-26T17:05:45,824 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/0c/93/7d228c4705aa324acb9632afb58d88ed8e5102fb8ada980552dd2fb7c3d3/cami_amber-1.0.2-py35-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,824 Found link https://files.pythonhosted.org/packages/46/12/f7f44ec20d37b71345f19751b91252519e8fc0850d6a62b1bb58c400b619/cami-amber-2.0.0.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.0 2024-08-26T17:05:45,825 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/5c/91/4191a0687e1d1d6cffe9d8998abcf0e8cfc7606e208bf4862231ec6682f4/cami_amber-2.0.0-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,826 Found link https://files.pythonhosted.org/packages/74/45/122265635d0fa0eb7ec210d51248bbd8eafdf24615337595f4d098b837a3/cami-amber-2.0.0.post0.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.0.post0 2024-08-26T17:05:45,827 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/5e/c0/0f32aef8951f3bc37e1aeece6c5cdd99188ea04580dfb5b5438d94096495/cami_amber-2.0.0.post0-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,827 Found link https://files.pythonhosted.org/packages/02/7b/72b90815a23a64644881103082f29cc5e640149cf8fcef86033939a48118/cami-amber-2.0.1.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.1 2024-08-26T17:05:45,828 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/f6/08/cfb0604700e16b488e3a790722ea9862c2f15c759832a466c32f6b63f066/cami_amber-2.0.1-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,828 Found link https://files.pythonhosted.org/packages/da/15/9e4709a9944c6c1b77b7d149fd1e665d6c844bfeb7ae2a4a1d406c021686/cami-amber-2.0.2.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.2 2024-08-26T17:05:45,829 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/40/68/60828147f757e9414ade4490e525434f23031959adb8490f013effe901af/cami_amber-2.0.2-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,829 Found link https://files.pythonhosted.org/packages/e5/8f/d5414f651987baf3f5693675613e706dca91364e6ec8db4d1d3c12b042a5/cami-amber-2.0.3.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.3 2024-08-26T17:05:45,830 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/e2/78/a10cbefe45f4bc26839eaad191d8922cb34df4deffcdc1f0f84bfb3efc62/cami_amber-2.0.3-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,830 Found link https://files.pythonhosted.org/packages/36/ad/e10d1a2d258eb52797ab88e1af0a043f4cfda8420af96a11432ebc75bcf9/cami-amber-2.0.4.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.4 2024-08-26T17:05:45,831 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/2e/37/923fc1cc70fdc49821e73732f1909a4f7d67e4ff2ff88149d5929d07880f/cami_amber-2.0.4-py311-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,832 Found link https://files.pythonhosted.org/packages/ea/69/a93fdeb73dff7b88b61c774c783a05befd1861cdcd4abecb67c6becd37b0/cami-amber-2.0.5.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.5 2024-08-26T17:05:45,832 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/c1/dd/b784586ce1e84bd311529925ace764d57d44e371de7967399a61ed63e705/cami_amber-2.0.5-py311-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,833 Found link https://files.pythonhosted.org/packages/49/54/9ba4ca1f9c4c10a2b049f184d6bcb69cdbf41031e5db82b880425e089682/cami-amber-2.0.6.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.6 2024-08-26T17:05:45,834 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/6c/86/210f414522297ba9faf8466934b8d6ebb460c2a40705d8f76f6528debf9d/cami_amber-2.0.6-py311-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-08-26T17:05:45,835 Fetching project page and analyzing links: https://www.piwheels.org/simple/cami-amber/ 2024-08-26T17:05:45,835 Getting page https://www.piwheels.org/simple/cami-amber/ 2024-08-26T17:05:45,837 Found index url https://www.piwheels.org/simple/ 2024-08-26T17:05:46,019 Fetched page https://www.piwheels.org/simple/cami-amber/ as text/html 2024-08-26T17:05:46,023 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.5-py311-none-any.whl#sha256=3fa1d8f6c550d0a2e18589919d10512f18034b7cc88d3b6b00249c79a503856d (from https://www.piwheels.org/simple/cami-amber/) 2024-08-26T17:05:46,024 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.4-py311-none-any.whl#sha256=b6257b65ca7d44d7909646d3c301ba6b0e615358f4589d5efa3aafcfd1cc7fc2 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-26T17:05:46,025 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.3-py37-none-any.whl#sha256=43e9b1f777c16118cbd4346acedb15bf93f4a488404968f8cdb017dd9d953f75 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-26T17:05:46,025 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.2-py37-none-any.whl#sha256=f5e79dc1ca87ea7359d46bf69926370b7482619626fd263966f71e8aeb52dad9 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-26T17:05:46,026 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.1-py37-none-any.whl#sha256=e1a290dac9f6970409cffcbd9f85afca7cf19271cac91c4df05cbd683320d74a (from https://www.piwheels.org/simple/cami-amber/) 2024-08-26T17:05:46,026 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.0.post0-py37-none-any.whl#sha256=bd25921e8c4082456919a9f5ddeecf11d286ca16fad409649a43e0147aea9ec1 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-26T17:05:46,027 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.0-py37-none-any.whl#sha256=815a88a2479745bb23b1535d60fc24c49aa0355f047a922328b4ce53ec3c4a23 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-26T17:05:46,027 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-1.0.2-py35-none-any.whl#sha256=24717a5f14b57746d37d10a094941e156afddb4d306e21522f716fcc6172c8bd (from https://www.piwheels.org/simple/cami-amber/) 2024-08-26T17:05:46,028 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-1.0.1-py35-none-any.whl#sha256=e8127504b71ae8754b1656e8236d2842f806565d74151745232fcce6035f4f77 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-26T17:05:46,028 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-0.7.1-py35-none-any.whl#sha256=cf020ddd1822ae33b98eb89cc6fcd7554b2f83509561ec216147f9fde7151e47 (from https://www.piwheels.org/simple/cami-amber/) 2024-08-26T17:05:46,029 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-0.7.0-py2.py3-none-any.whl#sha256=5c465a4c2a36470abed50ea87626ea0e314d7241c074550d4ad5a61c149535ac (from https://www.piwheels.org/simple/cami-amber/) 2024-08-26T17:05:46,030 Skipping link: not a file: https://www.piwheels.org/simple/cami-amber/ 2024-08-26T17:05:46,030 Skipping link: not a file: https://pypi.org/simple/cami-amber/ 2024-08-26T17:05:46,049 Given no hashes to check 1 links for project 'cami-amber': discarding no candidates 2024-08-26T17:05:46,051 Collecting cami-amber==2.0.6 2024-08-26T17:05:46,053 Created temporary directory: /tmp/pip-unpack-w42gghap 2024-08-26T17:05:46,264 Downloading cami-amber-2.0.6.tar.gz (66 kB) 2024-08-26T17:05:46,383 Added cami-amber==2.0.6 from https://files.pythonhosted.org/packages/49/54/9ba4ca1f9c4c10a2b049f184d6bcb69cdbf41031e5db82b880425e089682/cami-amber-2.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-z8vc1be2' 2024-08-26T17:05:46,385 Running setup.py (path:/tmp/pip-wheel-bmqi1ep9/cami-amber_e13762e107c642499305cfb2193054e8/setup.py) egg_info for package cami-amber 2024-08-26T17:05:46,386 Created temporary directory: /tmp/pip-pip-egg-info-weonyquv 2024-08-26T17:05:46,387 Preparing metadata (setup.py): started 2024-08-26T17:05:46,389 Running command python setup.py egg_info 2024-08-26T17:05:46,933 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-08-26T17:05:46,933 !! 2024-08-26T17:05:46,934 ******************************************************************************** 2024-08-26T17:05:46,935 Usage of dash-separated 'python-tag' will not be supported in future 2024-08-26T17:05:46,935 versions. Please use the underscore name 'python_tag' instead. 2024-08-26T17:05:46,936 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-08-26T17:05:46,937 or your builds will no longer be supported. 2024-08-26T17:05:46,937 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-08-26T17:05:46,938 ******************************************************************************** 2024-08-26T17:05:46,939 !! 2024-08-26T17:05:46,939 opt = self.warn_dash_deprecation(opt, section) 2024-08-26T17:05:47,480 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-08-26T17:05:47,481 !! 2024-08-26T17:05:47,482 ******************************************************************************** 2024-08-26T17:05:47,482 Usage of dash-separated 'python-tag' will not be supported in future 2024-08-26T17:05:47,483 versions. Please use the underscore name 'python_tag' instead. 2024-08-26T17:05:47,484 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-08-26T17:05:47,485 or your builds will no longer be supported. 2024-08-26T17:05:47,486 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-08-26T17:05:47,487 ******************************************************************************** 2024-08-26T17:05:47,488 !! 2024-08-26T17:05:47,488 opt = self.warn_dash_deprecation(opt, section) 2024-08-26T17:05:47,526 running egg_info 2024-08-26T17:05:47,527 creating /tmp/pip-pip-egg-info-weonyquv/cami_amber.egg-info 2024-08-26T17:05:47,554 writing /tmp/pip-pip-egg-info-weonyquv/cami_amber.egg-info/PKG-INFO 2024-08-26T17:05:47,558 writing dependency_links to /tmp/pip-pip-egg-info-weonyquv/cami_amber.egg-info/dependency_links.txt 2024-08-26T17:05:47,560 writing requirements to /tmp/pip-pip-egg-info-weonyquv/cami_amber.egg-info/requires.txt 2024-08-26T17:05:47,562 writing top-level names to /tmp/pip-pip-egg-info-weonyquv/cami_amber.egg-info/top_level.txt 2024-08-26T17:05:47,563 writing manifest file '/tmp/pip-pip-egg-info-weonyquv/cami_amber.egg-info/SOURCES.txt' 2024-08-26T17:05:47,680 reading manifest file '/tmp/pip-pip-egg-info-weonyquv/cami_amber.egg-info/SOURCES.txt' 2024-08-26T17:05:47,682 reading manifest template 'MANIFEST.in' 2024-08-26T17:05:47,683 adding license file 'LICENSE' 2024-08-26T17:05:47,686 writing manifest file '/tmp/pip-pip-egg-info-weonyquv/cami_amber.egg-info/SOURCES.txt' 2024-08-26T17:05:47,799 Preparing metadata (setup.py): finished with status 'done' 2024-08-26T17:05:47,804 Source in /tmp/pip-wheel-bmqi1ep9/cami-amber_e13762e107c642499305cfb2193054e8 has version 2.0.6, which satisfies requirement cami-amber==2.0.6 from https://files.pythonhosted.org/packages/49/54/9ba4ca1f9c4c10a2b049f184d6bcb69cdbf41031e5db82b880425e089682/cami-amber-2.0.6.tar.gz 2024-08-26T17:05:47,805 Removed cami-amber==2.0.6 from https://files.pythonhosted.org/packages/49/54/9ba4ca1f9c4c10a2b049f184d6bcb69cdbf41031e5db82b880425e089682/cami-amber-2.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-z8vc1be2' 2024-08-26T17:05:47,813 Created temporary directory: /tmp/pip-unpack-mbx8gwb3 2024-08-26T17:05:47,814 Created temporary directory: /tmp/pip-unpack-uedc9lbp 2024-08-26T17:05:47,815 Building wheels for collected packages: cami-amber 2024-08-26T17:05:47,819 Created temporary directory: /tmp/pip-wheel-vmqz99rt 2024-08-26T17:05:47,820 Building wheel for cami-amber (setup.py): started 2024-08-26T17:05:47,821 Destination directory: /tmp/pip-wheel-vmqz99rt 2024-08-26T17:05:47,822 Running command python setup.py bdist_wheel 2024-08-26T17:05:48,367 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-08-26T17:05:48,367 !! 2024-08-26T17:05:48,368 ******************************************************************************** 2024-08-26T17:05:48,368 Usage of dash-separated 'python-tag' will not be supported in future 2024-08-26T17:05:48,369 versions. Please use the underscore name 'python_tag' instead. 2024-08-26T17:05:48,370 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-08-26T17:05:48,370 or your builds will no longer be supported. 2024-08-26T17:05:48,371 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-08-26T17:05:48,371 ******************************************************************************** 2024-08-26T17:05:48,372 !! 2024-08-26T17:05:48,373 opt = self.warn_dash_deprecation(opt, section) 2024-08-26T17:05:48,889 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-08-26T17:05:48,889 !! 2024-08-26T17:05:48,890 ******************************************************************************** 2024-08-26T17:05:48,891 Usage of dash-separated 'python-tag' will not be supported in future 2024-08-26T17:05:48,891 versions. Please use the underscore name 'python_tag' instead. 2024-08-26T17:05:48,893 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-08-26T17:05:48,893 or your builds will no longer be supported. 2024-08-26T17:05:48,895 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-08-26T17:05:48,895 ******************************************************************************** 2024-08-26T17:05:48,897 !! 2024-08-26T17:05:48,897 opt = self.warn_dash_deprecation(opt, section) 2024-08-26T17:05:48,902 running bdist_wheel 2024-08-26T17:05:49,046 running build 2024-08-26T17:05:49,047 running build_py 2024-08-26T17:05:49,080 creating build 2024-08-26T17:05:49,081 creating build/lib 2024-08-26T17:05:49,082 creating build/lib/cami_amber 2024-08-26T17:05:49,083 copying cami_amber/plot_by_genome.py -> build/lib/cami_amber 2024-08-26T17:05:49,085 copying cami_amber/__init__.py -> build/lib/cami_amber 2024-08-26T17:05:49,087 copying cami_amber/plots.py -> build/lib/cami_amber 2024-08-26T17:05:49,089 copying cami_amber/unifrac_distance.py -> build/lib/cami_amber 2024-08-26T17:05:49,091 copying cami_amber/binning_classes.py -> build/lib/cami_amber 2024-08-26T17:05:49,094 copying cami_amber/evaluate.py -> build/lib/cami_amber 2024-08-26T17:05:49,096 copying cami_amber/precision_recall_per_bin.py -> build/lib/cami_amber 2024-08-26T17:05:49,098 copying cami_amber/amber_html.py -> build/lib/cami_amber 2024-08-26T17:05:49,102 creating build/lib/cami_amber/utils 2024-08-26T17:05:49,103 copying cami_amber/utils/__init__.py -> build/lib/cami_amber/utils 2024-08-26T17:05:49,104 copying cami_amber/utils/ProfilingTools.py -> build/lib/cami_amber/utils 2024-08-26T17:05:49,107 copying cami_amber/utils/argparse_parents.py -> build/lib/cami_amber/utils 2024-08-26T17:05:49,108 copying cami_amber/utils/EMDUnifrac.py -> build/lib/cami_amber/utils 2024-08-26T17:05:49,110 copying cami_amber/utils/labels.py -> build/lib/cami_amber/utils 2024-08-26T17:05:49,112 copying cami_amber/utils/convert_fasta_bins_to_biobox_format.py -> build/lib/cami_amber/utils 2024-08-26T17:05:49,114 copying cami_amber/utils/add_length_column.py -> build/lib/cami_amber/utils 2024-08-26T17:05:49,116 copying cami_amber/utils/load_data.py -> build/lib/cami_amber/utils 2024-08-26T17:05:49,118 copying cami_amber/utils/load_ncbi_taxinfo.py -> build/lib/cami_amber/utils 2024-08-26T17:05:49,120 copying cami_amber/utils/test.py -> build/lib/cami_amber/utils 2024-08-26T17:05:49,124 running build_scripts 2024-08-26T17:05:49,125 creating build/scripts-3.11 2024-08-26T17:05:49,126 copying version.py -> build/scripts-3.11 2024-08-26T17:05:49,128 copying and adjusting amber.py -> build/scripts-3.11 2024-08-26T17:05:49,130 copying setup.py -> build/scripts-3.11 2024-08-26T17:05:49,132 changing mode of build/scripts-3.11/version.py from 644 to 755 2024-08-26T17:05:49,132 changing mode of build/scripts-3.11/amber.py from 644 to 755 2024-08-26T17:05:49,133 changing mode of build/scripts-3.11/setup.py from 644 to 755 2024-08-26T17:05:49,159 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-08-26T17:05:49,159 !! 2024-08-26T17:05:49,160 ******************************************************************************** 2024-08-26T17:05:49,161 Please avoid running ``setup.py`` directly. 2024-08-26T17:05:49,161 Instead, use pypa/build, pypa/installer or other 2024-08-26T17:05:49,161 standards-based tools. 2024-08-26T17:05:49,162 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-08-26T17:05:49,163 ******************************************************************************** 2024-08-26T17:05:49,164 !! 2024-08-26T17:05:49,164 self.initialize_options() 2024-08-26T17:05:49,185 installing to build/bdist.linux-armv7l/wheel 2024-08-26T17:05:49,186 running install 2024-08-26T17:05:49,210 running install_lib 2024-08-26T17:05:49,237 creating build/bdist.linux-armv7l 2024-08-26T17:05:49,237 creating build/bdist.linux-armv7l/wheel 2024-08-26T17:05:49,239 creating build/bdist.linux-armv7l/wheel/cami_amber 2024-08-26T17:05:49,240 copying build/lib/cami_amber/plot_by_genome.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-26T17:05:49,242 copying build/lib/cami_amber/__init__.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-26T17:05:49,243 copying build/lib/cami_amber/plots.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-26T17:05:49,246 copying build/lib/cami_amber/unifrac_distance.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-26T17:05:49,248 copying build/lib/cami_amber/binning_classes.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-26T17:05:49,251 copying build/lib/cami_amber/evaluate.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-26T17:05:49,253 copying build/lib/cami_amber/precision_recall_per_bin.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-26T17:05:49,255 copying build/lib/cami_amber/amber_html.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-08-26T17:05:49,258 creating build/bdist.linux-armv7l/wheel/cami_amber/utils 2024-08-26T17:05:49,259 copying build/lib/cami_amber/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-26T17:05:49,261 copying build/lib/cami_amber/utils/ProfilingTools.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-26T17:05:49,263 copying build/lib/cami_amber/utils/argparse_parents.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-26T17:05:49,265 copying build/lib/cami_amber/utils/EMDUnifrac.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-26T17:05:49,267 copying build/lib/cami_amber/utils/labels.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-26T17:05:49,269 copying build/lib/cami_amber/utils/convert_fasta_bins_to_biobox_format.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-26T17:05:49,271 copying build/lib/cami_amber/utils/add_length_column.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-26T17:05:49,273 copying build/lib/cami_amber/utils/load_data.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-26T17:05:49,275 copying build/lib/cami_amber/utils/load_ncbi_taxinfo.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-26T17:05:49,278 copying build/lib/cami_amber/utils/test.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-08-26T17:05:49,279 running install_egg_info 2024-08-26T17:05:49,311 running egg_info 2024-08-26T17:05:49,337 writing cami_amber.egg-info/PKG-INFO 2024-08-26T17:05:49,340 writing dependency_links to cami_amber.egg-info/dependency_links.txt 2024-08-26T17:05:49,342 writing requirements to cami_amber.egg-info/requires.txt 2024-08-26T17:05:49,343 writing top-level names to cami_amber.egg-info/top_level.txt 2024-08-26T17:05:49,373 reading manifest file 'cami_amber.egg-info/SOURCES.txt' 2024-08-26T17:05:49,376 reading manifest template 'MANIFEST.in' 2024-08-26T17:05:49,377 adding license file 'LICENSE' 2024-08-26T17:05:49,380 writing manifest file 'cami_amber.egg-info/SOURCES.txt' 2024-08-26T17:05:49,381 Copying cami_amber.egg-info to build/bdist.linux-armv7l/wheel/./cami_amber-2.0.6-py3.11.egg-info 2024-08-26T17:05:49,393 running install_scripts 2024-08-26T17:05:49,394 creating build/bdist.linux-armv7l/wheel/cami_amber-2.0.6.data 2024-08-26T17:05:49,394 creating build/bdist.linux-armv7l/wheel/cami_amber-2.0.6.data/scripts 2024-08-26T17:05:49,395 copying build/scripts-3.11/version.py -> build/bdist.linux-armv7l/wheel/cami_amber-2.0.6.data/scripts 2024-08-26T17:05:49,397 copying build/scripts-3.11/amber.py -> build/bdist.linux-armv7l/wheel/cami_amber-2.0.6.data/scripts 2024-08-26T17:05:49,399 copying build/scripts-3.11/setup.py -> build/bdist.linux-armv7l/wheel/cami_amber-2.0.6.data/scripts 2024-08-26T17:05:49,401 changing mode of build/bdist.linux-armv7l/wheel/cami_amber-2.0.6.data/scripts/version.py to 755 2024-08-26T17:05:49,401 changing mode of build/bdist.linux-armv7l/wheel/cami_amber-2.0.6.data/scripts/amber.py to 755 2024-08-26T17:05:49,402 changing mode of build/bdist.linux-armv7l/wheel/cami_amber-2.0.6.data/scripts/setup.py to 755 2024-08-26T17:05:49,420 creating build/bdist.linux-armv7l/wheel/cami_amber-2.0.6.dist-info/WHEEL 2024-08-26T17:05:49,423 creating '/tmp/pip-wheel-vmqz99rt/cami_amber-2.0.6-py311-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-08-26T17:05:49,425 adding 'cami_amber/__init__.py' 2024-08-26T17:05:49,430 adding 'cami_amber/amber_html.py' 2024-08-26T17:05:49,435 adding 'cami_amber/binning_classes.py' 2024-08-26T17:05:49,436 adding 'cami_amber/evaluate.py' 2024-08-26T17:05:49,438 adding 'cami_amber/plot_by_genome.py' 2024-08-26T17:05:49,441 adding 'cami_amber/plots.py' 2024-08-26T17:05:49,443 adding 'cami_amber/precision_recall_per_bin.py' 2024-08-26T17:05:49,444 adding 'cami_amber/unifrac_distance.py' 2024-08-26T17:05:49,446 adding 'cami_amber/utils/EMDUnifrac.py' 2024-08-26T17:05:49,449 adding 'cami_amber/utils/ProfilingTools.py' 2024-08-26T17:05:49,450 adding 'cami_amber/utils/__init__.py' 2024-08-26T17:05:49,451 adding 'cami_amber/utils/add_length_column.py' 2024-08-26T17:05:49,453 adding 'cami_amber/utils/argparse_parents.py' 2024-08-26T17:05:49,454 adding 'cami_amber/utils/convert_fasta_bins_to_biobox_format.py' 2024-08-26T17:05:49,456 adding 'cami_amber/utils/labels.py' 2024-08-26T17:05:49,458 adding 'cami_amber/utils/load_data.py' 2024-08-26T17:05:49,459 adding 'cami_amber/utils/load_ncbi_taxinfo.py' 2024-08-26T17:05:49,461 adding 'cami_amber/utils/test.py' 2024-08-26T17:05:49,463 adding 'cami_amber-2.0.6.data/scripts/amber.py' 2024-08-26T17:05:49,465 adding 'cami_amber-2.0.6.data/scripts/setup.py' 2024-08-26T17:05:49,466 adding 'cami_amber-2.0.6.data/scripts/version.py' 2024-08-26T17:05:49,473 adding 'cami_amber-2.0.6.dist-info/LICENSE' 2024-08-26T17:05:49,475 adding 'cami_amber-2.0.6.dist-info/METADATA' 2024-08-26T17:05:49,476 adding 'cami_amber-2.0.6.dist-info/WHEEL' 2024-08-26T17:05:49,477 adding 'cami_amber-2.0.6.dist-info/top_level.txt' 2024-08-26T17:05:49,479 adding 'cami_amber-2.0.6.dist-info/RECORD' 2024-08-26T17:05:49,480 removing build/bdist.linux-armv7l/wheel 2024-08-26T17:05:49,603 Building wheel for cami-amber (setup.py): finished with status 'done' 2024-08-26T17:05:49,606 Created wheel for cami-amber: filename=cami_amber-2.0.6-py311-none-any.whl size=72464 sha256=ee092e5039ba75444c533e1c2177c605ff5f5740698e8f90ae7e1c98413c483c 2024-08-26T17:05:49,607 Stored in directory: /tmp/pip-ephem-wheel-cache-h2fecu50/wheels/49/0c/f8/6b076122c855a86991bc94be0fc0dc7b7304e0bce4bcb74f80 2024-08-26T17:05:49,622 Successfully built cami-amber 2024-08-26T17:05:49,627 Removed build tracker: '/tmp/pip-build-tracker-z8vc1be2'