2024-08-30T17:04:48,184 Created temporary directory: /tmp/pip-build-tracker-zqjen8uc 2024-08-30T17:04:48,185 Initialized build tracking at /tmp/pip-build-tracker-zqjen8uc 2024-08-30T17:04:48,185 Created build tracker: /tmp/pip-build-tracker-zqjen8uc 2024-08-30T17:04:48,186 Entered build tracker: /tmp/pip-build-tracker-zqjen8uc 2024-08-30T17:04:48,187 Created temporary directory: /tmp/pip-wheel-q3z90swv 2024-08-30T17:04:48,190 Created temporary directory: /tmp/pip-ephem-wheel-cache-sq_zrxxn 2024-08-30T17:04:48,232 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-08-30T17:04:48,235 2 location(s) to search for versions of tcrdist3: 2024-08-30T17:04:48,235 * https://pypi.org/simple/tcrdist3/ 2024-08-30T17:04:48,235 * https://www.piwheels.org/simple/tcrdist3/ 2024-08-30T17:04:48,236 Fetching project page and analyzing links: https://pypi.org/simple/tcrdist3/ 2024-08-30T17:04:48,237 Getting page https://pypi.org/simple/tcrdist3/ 2024-08-30T17:04:48,238 Found index url https://pypi.org/simple/ 2024-08-30T17:04:48,454 Fetched page https://pypi.org/simple/tcrdist3/ as application/vnd.pypi.simple.v1+json 2024-08-30T17:04:48,457 Skipping link: No binaries permitted for tcrdist3: https://files.pythonhosted.org/packages/33/8e/45627c031cfa54ec3d4df3f4bcc29d59f7a8c3bfaa845820ba2e8b6e5cb1/tcrdist3-0.1.6-py3-none-any.whl (from https://pypi.org/simple/tcrdist3/) 2024-08-30T17:04:48,457 Found link https://files.pythonhosted.org/packages/9f/e4/ccc8bc690da48bd66f692478a94123bf5ad4c4f57130eb563b5a07697e84/tcrdist3-0.1.6.tar.gz (from https://pypi.org/simple/tcrdist3/), version: 0.1.6 2024-08-30T17:04:48,458 Skipping link: No binaries permitted for tcrdist3: https://files.pythonhosted.org/packages/42/1f/95dc250fba970124d28e025c6a7acd7054500060e245c834d374d2d2d6c3/tcrdist3-0.1.9-py3-none-any.whl (from https://pypi.org/simple/tcrdist3/) 2024-08-30T17:04:48,458 Found link https://files.pythonhosted.org/packages/75/ad/c73a83c77f1418398fdb7db1caf81ba2143aa943344ec57097f46301fc94/tcrdist3-0.1.9.tar.gz (from https://pypi.org/simple/tcrdist3/), version: 0.1.9 2024-08-30T17:04:48,459 Skipping link: No binaries permitted for tcrdist3: https://files.pythonhosted.org/packages/b7/27/ee08ceb3a7c38a697378f0f465b9f6de4ff5b92b7d5e655e60d7ba9364b0/tcrdist3-0.2.0-py3-none-any.whl (from https://pypi.org/simple/tcrdist3/) 2024-08-30T17:04:48,460 Found link https://files.pythonhosted.org/packages/fe/c2/21baafe0cb085e947931ce904c6573a6b2186a998019673a7ababdc4df73/tcrdist3-0.2.0.tar.gz (from https://pypi.org/simple/tcrdist3/), version: 0.2.0 2024-08-30T17:04:48,460 Found link https://files.pythonhosted.org/packages/a2/6a/3a3ae4357f5b80269e410e5eacaf63c03c7fe6d89950269ed55c42d4ecfa/tcrdist3-0.2.2.tar.gz (from https://pypi.org/simple/tcrdist3/), version: 0.2.2 2024-08-30T17:04:48,461 Skipping link: No binaries permitted for tcrdist3: https://files.pythonhosted.org/packages/5d/04/eac6af0e2011be7b71ac3f62d13de9086a44cd1990c3ef0bd096e4d1a28d/tcrdist3-0.3-py3-none-any.whl (from https://pypi.org/simple/tcrdist3/) 2024-08-30T17:04:48,462 Found link https://files.pythonhosted.org/packages/ef/c8/0a85a780652d924b74ad7170d682e0f3d435001e3c7ca92823eb8f6ac54c/tcrdist3-0.3.tar.gz (from https://pypi.org/simple/tcrdist3/), version: 0.3 2024-08-30T17:04:48,463 Fetching project page and analyzing links: https://www.piwheels.org/simple/tcrdist3/ 2024-08-30T17:04:48,463 Getting page https://www.piwheels.org/simple/tcrdist3/ 2024-08-30T17:04:48,465 Found index url https://www.piwheels.org/simple/ 2024-08-30T17:04:48,626 Fetched page https://www.piwheels.org/simple/tcrdist3/ as text/html 2024-08-30T17:04:48,629 Skipping link: No binaries permitted for tcrdist3: https://www.piwheels.org/simple/tcrdist3/tcrdist3-0.2.2-py3-none-any.whl#sha256=7a748bce12313e9079bdd49ad0c02d562a20d72ab5cf251a4b81aad96e7cc863 (from https://www.piwheels.org/simple/tcrdist3/) 2024-08-30T17:04:48,629 Skipping link: No binaries permitted for tcrdist3: https://www.piwheels.org/simple/tcrdist3/tcrdist3-0.2.0-py3-none-any.whl#sha256=80139c2feb27955df6789bdb3e14e866a1b188c820e13a2b45c5681d33fe7822 (from https://www.piwheels.org/simple/tcrdist3/) 2024-08-30T17:04:48,630 Skipping link: No binaries permitted for tcrdist3: https://www.piwheels.org/simple/tcrdist3/tcrdist3-0.1.9-py3-none-any.whl#sha256=2234ee7ae826f002b2efdf5c48091f20c5b646fec7b96c3e511aad9aefa692c1 (from https://www.piwheels.org/simple/tcrdist3/) 2024-08-30T17:04:48,631 Skipping link: No binaries permitted for tcrdist3: https://www.piwheels.org/simple/tcrdist3/tcrdist3-0.1.6-py3-none-any.whl#sha256=6a25ad1928c60b17a22d06e208da7e67b27fe1658083e8e3414b0410af370d97 (from https://www.piwheels.org/simple/tcrdist3/) 2024-08-30T17:04:48,631 Skipping link: not a file: https://www.piwheels.org/simple/tcrdist3/ 2024-08-30T17:04:48,632 Skipping link: not a file: https://pypi.org/simple/tcrdist3/ 2024-08-30T17:04:48,649 Given no hashes to check 1 links for project 'tcrdist3': discarding no candidates 2024-08-30T17:04:48,651 Collecting tcrdist3==0.3 2024-08-30T17:04:48,653 Created temporary directory: /tmp/pip-unpack-umyq3xlw 2024-08-30T17:04:48,874 Downloading tcrdist3-0.3.tar.gz (2.4 MB) 2024-08-30T17:04:50,399 Added tcrdist3==0.3 from https://files.pythonhosted.org/packages/ef/c8/0a85a780652d924b74ad7170d682e0f3d435001e3c7ca92823eb8f6ac54c/tcrdist3-0.3.tar.gz to build tracker '/tmp/pip-build-tracker-zqjen8uc' 2024-08-30T17:04:50,400 Running setup.py (path:/tmp/pip-wheel-q3z90swv/tcrdist3_4ca2f7661e3c4ca98ee065de9b57598a/setup.py) egg_info for package tcrdist3 2024-08-30T17:04:50,401 Created temporary directory: /tmp/pip-pip-egg-info-efpszr01 2024-08-30T17:04:50,402 Preparing metadata (setup.py): started 2024-08-30T17:04:50,403 Running command python setup.py egg_info 2024-08-30T17:04:51,478 running egg_info 2024-08-30T17:04:51,479 creating /tmp/pip-pip-egg-info-efpszr01/tcrdist3.egg-info 2024-08-30T17:04:51,506 writing /tmp/pip-pip-egg-info-efpszr01/tcrdist3.egg-info/PKG-INFO 2024-08-30T17:04:51,509 writing dependency_links to /tmp/pip-pip-egg-info-efpszr01/tcrdist3.egg-info/dependency_links.txt 2024-08-30T17:04:51,511 writing requirements to /tmp/pip-pip-egg-info-efpszr01/tcrdist3.egg-info/requires.txt 2024-08-30T17:04:51,513 writing top-level names to /tmp/pip-pip-egg-info-efpszr01/tcrdist3.egg-info/top_level.txt 2024-08-30T17:04:51,514 writing manifest file '/tmp/pip-pip-egg-info-efpszr01/tcrdist3.egg-info/SOURCES.txt' 2024-08-30T17:04:51,632 reading manifest file '/tmp/pip-pip-egg-info-efpszr01/tcrdist3.egg-info/SOURCES.txt' 2024-08-30T17:04:51,634 adding license file 'LICENSE' 2024-08-30T17:04:51,640 writing manifest file '/tmp/pip-pip-egg-info-efpszr01/tcrdist3.egg-info/SOURCES.txt' 2024-08-30T17:04:51,752 Preparing metadata (setup.py): finished with status 'done' 2024-08-30T17:04:51,756 Source in /tmp/pip-wheel-q3z90swv/tcrdist3_4ca2f7661e3c4ca98ee065de9b57598a has version 0.3, which satisfies requirement tcrdist3==0.3 from https://files.pythonhosted.org/packages/ef/c8/0a85a780652d924b74ad7170d682e0f3d435001e3c7ca92823eb8f6ac54c/tcrdist3-0.3.tar.gz 2024-08-30T17:04:51,757 Removed tcrdist3==0.3 from https://files.pythonhosted.org/packages/ef/c8/0a85a780652d924b74ad7170d682e0f3d435001e3c7ca92823eb8f6ac54c/tcrdist3-0.3.tar.gz from build tracker '/tmp/pip-build-tracker-zqjen8uc' 2024-08-30T17:04:51,765 Created temporary directory: /tmp/pip-unpack-s11385fv 2024-08-30T17:04:51,766 Created temporary directory: /tmp/pip-unpack-urv3zj1z 2024-08-30T17:04:51,766 Building wheels for collected packages: tcrdist3 2024-08-30T17:04:51,770 Created temporary directory: /tmp/pip-wheel-_h390u82 2024-08-30T17:04:51,771 Building wheel for tcrdist3 (setup.py): started 2024-08-30T17:04:51,772 Destination directory: /tmp/pip-wheel-_h390u82 2024-08-30T17:04:51,773 Running command python setup.py bdist_wheel 2024-08-30T17:04:52,816 running bdist_wheel 2024-08-30T17:04:52,952 running build 2024-08-30T17:04:52,952 running build_py 2024-08-30T17:04:52,985 creating build 2024-08-30T17:04:52,985 creating build/lib 2024-08-30T17:04:52,986 creating build/lib/tcrdist 2024-08-30T17:04:52,987 copying tcrdist/translation.py -> build/lib/tcrdist 2024-08-30T17:04:52,990 copying tcrdist/__init__.py -> build/lib/tcrdist 2024-08-30T17:04:52,991 copying tcrdist/swap_gene_name.py -> build/lib/tcrdist 2024-08-30T17:04:52,993 copying tcrdist/tabulate.py -> build/lib/tcrdist 2024-08-30T17:04:52,995 copying tcrdist/speed.py -> build/lib/tcrdist 2024-08-30T17:04:52,997 copying tcrdist/gene_pairing_plot.py -> build/lib/tcrdist 2024-08-30T17:04:53,000 copying tcrdist/diversity.py -> build/lib/tcrdist 2024-08-30T17:04:53,002 copying tcrdist/plotting.py -> build/lib/tcrdist 2024-08-30T17:04:53,003 copying tcrdist/sparse.py -> build/lib/tcrdist 2024-08-30T17:04:53,005 copying tcrdist/tree.py -> build/lib/tcrdist 2024-08-30T17:04:53,008 copying tcrdist/centers.py -> build/lib/tcrdist 2024-08-30T17:04:53,010 copying tcrdist/setup_tests.py -> build/lib/tcrdist 2024-08-30T17:04:53,012 copying tcrdist/olga_load_model.py -> build/lib/tcrdist 2024-08-30T17:04:53,015 copying tcrdist/repertoire.py -> build/lib/tcrdist 2024-08-30T17:04:53,017 copying tcrdist/repertoire_db.py -> build/lib/tcrdist 2024-08-30T17:04:53,019 copying tcrdist/ecdf.py -> build/lib/tcrdist 2024-08-30T17:04:53,022 copying tcrdist/adpt_funcs.py -> build/lib/tcrdist 2024-08-30T17:04:53,024 copying tcrdist/olga_directed.py -> build/lib/tcrdist 2024-08-30T17:04:53,026 copying tcrdist/automate.py -> build/lib/tcrdist 2024-08-30T17:04:53,029 copying tcrdist/summarize.py -> build/lib/tcrdist 2024-08-30T17:04:53,031 copying tcrdist/join.py -> build/lib/tcrdist 2024-08-30T17:04:53,033 copying tcrdist/rep_funcs.py -> build/lib/tcrdist 2024-08-30T17:04:53,035 copying tcrdist/pgen.py -> build/lib/tcrdist 2024-08-30T17:04:53,037 copying tcrdist/vdjtools_funcs.py -> build/lib/tcrdist 2024-08-30T17:04:53,039 copying tcrdist/html_colors.py -> build/lib/tcrdist 2024-08-30T17:04:53,041 copying tcrdist/public.py -> build/lib/tcrdist 2024-08-30T17:04:53,044 copying tcrdist/sample.py -> build/lib/tcrdist 2024-08-30T17:04:53,046 copying tcrdist/memory.py -> build/lib/tcrdist 2024-08-30T17:04:53,048 copying tcrdist/background.py -> build/lib/tcrdist 2024-08-30T17:04:53,051 copying tcrdist/neighbors.py -> build/lib/tcrdist 2024-08-30T17:04:53,053 copying tcrdist/paths.py -> build/lib/tcrdist 2024-08-30T17:04:53,055 copying tcrdist/regex.py -> build/lib/tcrdist 2024-08-30T17:04:53,057 copying tcrdist/rep_diff.py -> build/lib/tcrdist 2024-08-30T17:04:53,059 copying tcrdist/mappers.py -> build/lib/tcrdist 2024-08-30T17:04:53,062 copying tcrdist/breadth.py -> build/lib/tcrdist 2024-08-30T17:04:53,064 creating build/lib/tcrdist/data 2024-08-30T17:04:53,065 copying tcrdist/data/__init__.py -> build/lib/tcrdist/data 2024-08-30T17:04:53,067 creating build/lib/tcrdist/default_models 2024-08-30T17:04:53,068 copying tcrdist/default_models/__init__.py -> build/lib/tcrdist/default_models 2024-08-30T17:04:53,071 creating build/lib/tcrdist/tests 2024-08-30T17:04:53,072 copying tcrdist/tests/test_example_8.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,074 copying tcrdist/tests/longtest_simulate_cdr3_w_olga.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,077 copying tcrdist/tests/__init__.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,078 copying tcrdist/tests/test_example_6.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,080 copying tcrdist/tests/test_background.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,082 copying tcrdist/tests/test_join.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,084 copying tcrdist/tests/test_example_14.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,085 copying tcrdist/tests/test_example_21.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,087 copying tcrdist/tests/test_workflow_2.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,089 copying tcrdist/tests/test_public.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,091 copying tcrdist/tests/test_olga_synthetic.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,093 copying tcrdist/tests/test_example_1.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,094 copying tcrdist/tests/test_example_13.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,096 copying tcrdist/tests/test_repertoire.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,098 copying tcrdist/tests/test_introduction_2.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,100 copying tcrdist/tests/test_pgen_mouse.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,102 copying tcrdist/tests/test_neighbors.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,104 copying tcrdist/tests/test_example_24_centers.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,106 copying tcrdist/tests/test_translation.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,108 copying tcrdist/tests/test_regex.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,109 copying tcrdist/tests/test_example_15.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,111 copying tcrdist/tests/test_downloads.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,113 copying tcrdist/tests/test_example_3.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,114 copying tcrdist/tests/longtest_pgen_parallel.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,116 copying tcrdist/tests/test_example_23.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,118 copying tcrdist/tests/test_introduction_6.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,120 copying tcrdist/tests/test_example_18.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,121 copying tcrdist/tests/test_centers.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,124 copying tcrdist/tests/test_example_16.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,125 copying tcrdist/tests/test_example_2.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,127 copying tcrdist/tests/test_bulkdata.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,129 copying tcrdist/tests/test_example_20.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,131 copying tcrdist/tests/test_introduction_3.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,132 copying tcrdist/tests/test_example_9.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,134 copying tcrdist/tests/test_repertoire_db.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,136 copying tcrdist/tests/test_out_of_memory_features.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,138 copying tcrdist/tests/test_memory.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,140 copying tcrdist/tests/test_pgen_1.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,141 copying tcrdist/tests/test_summarize.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,143 copying tcrdist/tests/test_rhesus.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,145 copying tcrdist/tests/test_rep_funcs.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,147 copying tcrdist/tests/test_tree.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,149 copying tcrdist/tests/test_introduction_1.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,151 copying tcrdist/tests/test_example_22.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,153 copying tcrdist/tests/test_example_4.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,154 copying tcrdist/tests/test_workflow_1.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,156 copying tcrdist/tests/test_gallery_hdiff.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,158 copying tcrdist/tests/test_example_11.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,160 copying tcrdist/tests/test_ecdf_example.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,162 copying tcrdist/tests/test_diversity.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,164 copying tcrdist/tests/test_introduction_4.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,165 copying tcrdist/tests/test_sparse_pwrect.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,167 copying tcrdist/tests/test_breadth.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,170 copying tcrdist/tests/test_vdj_funcs.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,171 copying tcrdist/tests/test_introduction_5.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,173 copying tcrdist/tests/test_example_19.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,175 copying tcrdist/tests/test_example_17.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,177 copying tcrdist/tests/test_example_7.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,178 copying tcrdist/tests/test_automatic.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,180 copying tcrdist/tests/test_setup_tests.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,182 copying tcrdist/tests/test_example_12.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,183 copying tcrdist/tests/test_example_5.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,185 copying tcrdist/tests/test_example_10.py -> build/lib/tcrdist/tests 2024-08-30T17:04:53,187 creating build/lib/tcrdist/db 2024-08-30T17:04:53,188 copying tcrdist/db/__init__.py -> build/lib/tcrdist/db 2024-08-30T17:04:53,190 creating build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,191 copying tcrdist/data/covid19/__init__.py -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,193 creating build/lib/tcrdist/default_models/human_T_beta 2024-08-30T17:04:53,194 copying tcrdist/default_models/human_T_beta/__init__.py -> build/lib/tcrdist/default_models/human_T_beta 2024-08-30T17:04:53,196 creating build/lib/tcrdist/default_models/human_T_alpha 2024-08-30T17:04:53,196 copying tcrdist/default_models/human_T_alpha/__init__.py -> build/lib/tcrdist/default_models/human_T_alpha 2024-08-30T17:04:53,198 creating build/lib/tcrdist/default_models/human_B_heavy 2024-08-30T17:04:53,199 copying tcrdist/default_models/human_B_heavy/__init__.py -> build/lib/tcrdist/default_models/human_B_heavy 2024-08-30T17:04:53,201 creating build/lib/tcrdist/default_models/mouse_T_alpha 2024-08-30T17:04:53,202 copying tcrdist/default_models/mouse_T_alpha/__init__.py -> build/lib/tcrdist/default_models/mouse_T_alpha 2024-08-30T17:04:53,204 creating build/lib/tcrdist/default_models/mouse_T_beta 2024-08-30T17:04:53,205 copying tcrdist/default_models/mouse_T_beta/__init__.py -> build/lib/tcrdist/default_models/mouse_T_beta 2024-08-30T17:04:53,226 copying tcrdist/db/adaptive_imgt_mapping.csv -> build/lib/tcrdist/db 2024-08-30T17:04:53,229 copying tcrdist/db/alphabeta_gammadelta_db.tsv -> build/lib/tcrdist/db 2024-08-30T17:04:53,242 copying tcrdist/db/combo_xcr_2024-03-05.tsv -> build/lib/tcrdist/db 2024-08-30T17:04:53,261 copying tcrdist/db/combo_xcr_2023-12-30.tsv -> build/lib/tcrdist/db 2024-08-30T17:04:53,281 copying tcrdist/db/combo_db.tsv -> build/lib/tcrdist/db 2024-08-30T17:04:53,292 copying tcrdist/data/covid19/mira_epitope_10_2274_LSPRWYFYY_SPRWYFYYL.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,310 copying tcrdist/data/covid19/mira_epitope_9_2477_FLQSINFVR_FLQSINFVRI_FLYLYALVYF_GLEAPFLYLY_INFVRIIMR_LQSINFVRI_LQSINFVRII_QSINFVRII_SINFVRIIMR_VYFLQSINF_VYFLQSINFV_YFLQSINFVR_YLYALVYFL.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,333 copying tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,339 copying tcrdist/data/covid19/mira_epitope_183_39_RIRGGDGKM_RIRGGDGKMK.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,341 copying tcrdist/data/covid19/mira_epitope_16_1683_QYIKWPWYI_YEQYIKWPW_YEQYIKWPWY.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,361 copying tcrdist/data/covid19/mira_epitope_1_8260_HTTDPSFLGRY.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,414 copying tcrdist/data/covid19/m60_bkgd_test_input.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,477 copying tcrdist/data/covid19/mira_epitope_18_1578_FPNITNLCPF_QPTESIVRF_RFPNITNLCPF_TESIVRFPNI_VQPTESIVRF_VRFPNITNL.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,491 copying tcrdist/data/covid19/mira_epitope_155_59_RARSVSPKL_SVSPKLFIR.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,494 copying tcrdist/data/covid19/mira_epitope_29_1097_TVLSFCAFA_VLSFCAFAV.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,504 copying tcrdist/data/covid19/mira_epitope_176_44_SSTFNVPMEKLK.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,507 copying tcrdist/data/covid19/mira_epitope_44_697_FPPTSFGPL.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,513 copying tcrdist/data/covid19/mira_epitope_53_532_NYLYRLFRK_NYNYLYRLF.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,519 copying tcrdist/data/covid19/mira_epitope_99_191_QECVRGTTVL.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,523 copying tcrdist/data/covid19/mira_epitope_147_73_DLFMRIFTI_MDLFMRIFTI.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,525 copying tcrdist/data/covid19/mira_epitope_30_1064_KAYNVTQAF.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,534 copying tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.csv.bE5ctrl.centers.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,543 copying tcrdist/data/covid19/mira_epitope_70_345_DTDFVNEFYAY_NRDVDTDFVNEFY.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,548 copying tcrdist/data/covid19/mira_epitope_51_546_AYKTFPPTEPK_KTFPPTEPK.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,554 copying tcrdist/data/covid19/mira_epitope_133_102_NQKLIANQF.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,557 copying tcrdist/data/covid19/mira_epitope_192_31_FQPTNGVGY.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,560 copying tcrdist/data/covid19/mira_epitope_111_146_AEIPKEEVKPF_ASKIITLKK_SASKIITLK.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,563 copying tcrdist/data/covid19/mira_epitope_67_382_APHGVVFL_APHGVVFLHV_GVVFLHVTY_VVFLHVTYV.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,569 copying tcrdist/data/covid19/mira_epitope_110_148_ELIRQGTDY_QELIRQGTDY_QELIRQGTDYKHW.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,573 copying tcrdist/data/covid19/mira_epitope_90_216_GYQPYRVVVL_PYRVVVLSF_QPYRVVVL_QPYRVVVLSF.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,578 copying tcrdist/data/covid19/mira_epitope_118_136_ALNTPKDHI_ATEGALNTPK.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,582 copying tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.radius.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,586 copying tcrdist/data/covid19/m60_test_input.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,590 copying tcrdist/data/covid19/mira_epitope_185_39_ASQRVAGDSGFAAY_DSGFAAYSR_VAGDSGFAAY.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,593 copying tcrdist/data/covid19/mira_epitope_140_92_NSSPDDQIGY_NTNSSPDDQIGYY_SSPDDQIGY_SSPDDQIGYY.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,597 copying tcrdist/data/covid19/mira_epitope_48_610_YLQPRTFL_YLQPRTFLL_YYVGYLQPRTF.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,606 copying tcrdist/data/covid19/mira_epitope_45_689_SYFTSDYYQL_VLHSYFTSDY_YFTSDYYQLY.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,614 copying tcrdist/data/covid19/mira_epitope_37_818_FGEVFNATRF_FNATRFASVY_GEVFNATRF_NATRFASVY.tcrdist3.csv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,622 copying tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.csv.bE5ctrl.centers.csv.ranked_centers.tsv -> build/lib/tcrdist/data/covid19 2024-08-30T17:04:53,626 copying tcrdist/default_models/human_T_beta/V_gene_CDR3_anchors.csv -> build/lib/tcrdist/default_models/human_T_beta 2024-08-30T17:04:53,630 copying tcrdist/default_models/human_T_beta/J_gene_CDR3_anchors.csv -> build/lib/tcrdist/default_models/human_T_beta 2024-08-30T17:04:53,632 copying tcrdist/default_models/human_T_beta/model_marginals.txt -> build/lib/tcrdist/default_models/human_T_beta 2024-08-30T17:04:53,635 copying tcrdist/default_models/human_T_beta/model_params.txt -> build/lib/tcrdist/default_models/human_T_beta 2024-08-30T17:04:53,637 copying tcrdist/default_models/human_T_alpha/V_gene_CDR3_anchors.csv -> build/lib/tcrdist/default_models/human_T_alpha 2024-08-30T17:04:53,640 copying tcrdist/default_models/human_T_alpha/J_gene_CDR3_anchors.csv -> build/lib/tcrdist/default_models/human_T_alpha 2024-08-30T17:04:53,642 copying tcrdist/default_models/human_T_alpha/model_marginals.txt -> build/lib/tcrdist/default_models/human_T_alpha 2024-08-30T17:04:53,645 copying tcrdist/default_models/human_T_alpha/model_params.txt -> build/lib/tcrdist/default_models/human_T_alpha 2024-08-30T17:04:53,648 copying tcrdist/default_models/human_B_heavy/V_gene_CDR3_anchors.csv -> build/lib/tcrdist/default_models/human_B_heavy 2024-08-30T17:04:53,651 copying tcrdist/default_models/human_B_heavy/J_gene_CDR3_anchors.csv -> build/lib/tcrdist/default_models/human_B_heavy 2024-08-30T17:04:53,653 copying tcrdist/default_models/human_B_heavy/model_marginals.txt -> build/lib/tcrdist/default_models/human_B_heavy 2024-08-30T17:04:53,665 copying tcrdist/default_models/human_B_heavy/model_params.txt -> build/lib/tcrdist/default_models/human_B_heavy 2024-08-30T17:04:53,668 copying tcrdist/default_models/mouse_T_alpha/V_gene_CDR3_anchors.csv -> build/lib/tcrdist/default_models/mouse_T_alpha 2024-08-30T17:04:53,670 copying tcrdist/default_models/mouse_T_alpha/J_gene_CDR3_anchors.csv -> build/lib/tcrdist/default_models/mouse_T_alpha 2024-08-30T17:04:53,672 copying tcrdist/default_models/mouse_T_alpha/model_marginals.txt -> build/lib/tcrdist/default_models/mouse_T_alpha 2024-08-30T17:04:53,676 copying tcrdist/default_models/mouse_T_alpha/model_params.txt -> build/lib/tcrdist/default_models/mouse_T_alpha 2024-08-30T17:04:53,679 copying tcrdist/default_models/mouse_T_beta/V_gene_CDR3_anchors.csv -> build/lib/tcrdist/default_models/mouse_T_beta 2024-08-30T17:04:53,681 copying tcrdist/default_models/mouse_T_beta/J_gene_CDR3_anchors.csv -> build/lib/tcrdist/default_models/mouse_T_beta 2024-08-30T17:04:53,683 copying tcrdist/default_models/mouse_T_beta/model_marginals.txt -> build/lib/tcrdist/default_models/mouse_T_beta 2024-08-30T17:04:53,685 copying tcrdist/default_models/mouse_T_beta/model_params.txt -> build/lib/tcrdist/default_models/mouse_T_beta 2024-08-30T17:04:53,722 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-08-30T17:04:53,723 !! 2024-08-30T17:04:53,724 ******************************************************************************** 2024-08-30T17:04:53,725 Please avoid running ``setup.py`` directly. 2024-08-30T17:04:53,725 Instead, use pypa/build, pypa/installer or other 2024-08-30T17:04:53,726 standards-based tools. 2024-08-30T17:04:53,727 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-08-30T17:04:53,728 ******************************************************************************** 2024-08-30T17:04:53,729 !! 2024-08-30T17:04:53,729 self.initialize_options() 2024-08-30T17:04:53,750 installing to build/bdist.linux-armv7l/wheel 2024-08-30T17:04:53,751 running install 2024-08-30T17:04:53,775 running install_lib 2024-08-30T17:04:53,801 creating build/bdist.linux-armv7l 2024-08-30T17:04:53,802 creating build/bdist.linux-armv7l/wheel 2024-08-30T17:04:53,804 creating build/bdist.linux-armv7l/wheel/tcrdist 2024-08-30T17:04:53,805 copying build/lib/tcrdist/translation.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:53,807 copying build/lib/tcrdist/__init__.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:53,809 copying build/lib/tcrdist/swap_gene_name.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:53,811 copying build/lib/tcrdist/tabulate.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:53,813 copying build/lib/tcrdist/speed.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:53,815 copying build/lib/tcrdist/gene_pairing_plot.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:53,818 creating build/bdist.linux-armv7l/wheel/tcrdist/data 2024-08-30T17:04:53,819 copying build/lib/tcrdist/data/__init__.py -> build/bdist.linux-armv7l/wheel/./tcrdist/data 2024-08-30T17:04:53,821 creating build/bdist.linux-armv7l/wheel/tcrdist/data/covid19 2024-08-30T17:04:53,822 copying build/lib/tcrdist/data/covid19/mira_epitope_10_2274_LSPRWYFYY_SPRWYFYYL.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:53,846 copying build/lib/tcrdist/data/covid19/mira_epitope_9_2477_FLQSINFVR_FLQSINFVRI_FLYLYALVYF_GLEAPFLYLY_INFVRIIMR_LQSINFVRI_LQSINFVRII_QSINFVRII_SINFVRIIMR_VYFLQSINF_VYFLQSINFV_YFLQSINFVR_YLYALVYFL.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:53,877 copying build/lib/tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:53,882 copying build/lib/tcrdist/data/covid19/__init__.py -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:53,883 copying build/lib/tcrdist/data/covid19/mira_epitope_183_39_RIRGGDGKM_RIRGGDGKMK.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:53,886 copying build/lib/tcrdist/data/covid19/mira_epitope_16_1683_QYIKWPWYI_YEQYIKWPW_YEQYIKWPWY.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:53,902 copying build/lib/tcrdist/data/covid19/mira_epitope_1_8260_HTTDPSFLGRY.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:53,960 copying build/lib/tcrdist/data/covid19/m60_bkgd_test_input.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,019 copying build/lib/tcrdist/data/covid19/mira_epitope_18_1578_FPNITNLCPF_QPTESIVRF_RFPNITNLCPF_TESIVRFPNI_VQPTESIVRF_VRFPNITNL.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,039 copying build/lib/tcrdist/data/covid19/mira_epitope_155_59_RARSVSPKL_SVSPKLFIR.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,042 copying build/lib/tcrdist/data/covid19/mira_epitope_29_1097_TVLSFCAFA_VLSFCAFAV.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,055 copying build/lib/tcrdist/data/covid19/mira_epitope_176_44_SSTFNVPMEKLK.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,057 copying build/lib/tcrdist/data/covid19/mira_epitope_44_697_FPPTSFGPL.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,066 copying build/lib/tcrdist/data/covid19/mira_epitope_53_532_NYLYRLFRK_NYNYLYRLF.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,074 copying build/lib/tcrdist/data/covid19/mira_epitope_99_191_QECVRGTTVL.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,078 copying build/lib/tcrdist/data/covid19/mira_epitope_147_73_DLFMRIFTI_MDLFMRIFTI.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,082 copying build/lib/tcrdist/data/covid19/mira_epitope_30_1064_KAYNVTQAF.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,094 copying build/lib/tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.csv.bE5ctrl.centers.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,104 copying build/lib/tcrdist/data/covid19/mira_epitope_70_345_DTDFVNEFYAY_NRDVDTDFVNEFY.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,110 copying build/lib/tcrdist/data/covid19/mira_epitope_51_546_AYKTFPPTEPK_KTFPPTEPK.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,119 copying build/lib/tcrdist/data/covid19/mira_epitope_133_102_NQKLIANQF.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,122 copying build/lib/tcrdist/data/covid19/mira_epitope_192_31_FQPTNGVGY.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,125 copying build/lib/tcrdist/data/covid19/mira_epitope_111_146_AEIPKEEVKPF_ASKIITLKK_SASKIITLK.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,128 copying build/lib/tcrdist/data/covid19/mira_epitope_67_382_APHGVVFL_APHGVVFLHV_GVVFLHVTY_VVFLHVTYV.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,133 copying build/lib/tcrdist/data/covid19/mira_epitope_110_148_ELIRQGTDY_QELIRQGTDY_QELIRQGTDYKHW.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,137 copying build/lib/tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.csv.bE5ctrl.centers.csv.ranked_centers.tsv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,141 copying build/lib/tcrdist/data/covid19/mira_epitope_90_216_GYQPYRVVVL_PYRVVVLSF_QPYRVVVL_QPYRVVVLSF.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,146 copying build/lib/tcrdist/data/covid19/mira_epitope_118_136_ALNTPKDHI_ATEGALNTPK.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,150 copying build/lib/tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.radius.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,153 copying build/lib/tcrdist/data/covid19/m60_test_input.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,156 copying build/lib/tcrdist/data/covid19/mira_epitope_185_39_ASQRVAGDSGFAAY_DSGFAAYSR_VAGDSGFAAY.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,158 copying build/lib/tcrdist/data/covid19/mira_epitope_140_92_NSSPDDQIGY_NTNSSPDDQIGYY_SSPDDQIGY_SSPDDQIGYY.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,161 copying build/lib/tcrdist/data/covid19/mira_epitope_48_610_YLQPRTFL_YLQPRTFLL_YYVGYLQPRTF.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,167 copying build/lib/tcrdist/data/covid19/mira_epitope_45_689_SYFTSDYYQL_VLHSYFTSDY_YFTSDYYQLY.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,174 copying build/lib/tcrdist/data/covid19/mira_epitope_37_818_FGEVFNATRF_FNATRFASVY_GEVFNATRF_NATRFASVY.tcrdist3.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/data/covid19 2024-08-30T17:04:54,182 copying build/lib/tcrdist/diversity.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,184 copying build/lib/tcrdist/plotting.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,186 copying build/lib/tcrdist/sparse.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,187 copying build/lib/tcrdist/tree.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,190 copying build/lib/tcrdist/centers.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,193 copying build/lib/tcrdist/setup_tests.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,196 creating build/bdist.linux-armv7l/wheel/tcrdist/default_models 2024-08-30T17:04:54,197 creating build/bdist.linux-armv7l/wheel/tcrdist/default_models/human_T_beta 2024-08-30T17:04:54,198 copying build/lib/tcrdist/default_models/human_T_beta/__init__.py -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_T_beta 2024-08-30T17:04:54,200 copying build/lib/tcrdist/default_models/human_T_beta/model_marginals.txt -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_T_beta 2024-08-30T17:04:54,203 copying build/lib/tcrdist/default_models/human_T_beta/V_gene_CDR3_anchors.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_T_beta 2024-08-30T17:04:54,205 copying build/lib/tcrdist/default_models/human_T_beta/J_gene_CDR3_anchors.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_T_beta 2024-08-30T17:04:54,207 copying build/lib/tcrdist/default_models/human_T_beta/model_params.txt -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_T_beta 2024-08-30T17:04:54,209 copying build/lib/tcrdist/default_models/__init__.py -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models 2024-08-30T17:04:54,211 creating build/bdist.linux-armv7l/wheel/tcrdist/default_models/human_T_alpha 2024-08-30T17:04:54,212 copying build/lib/tcrdist/default_models/human_T_alpha/__init__.py -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_T_alpha 2024-08-30T17:04:54,214 copying build/lib/tcrdist/default_models/human_T_alpha/model_marginals.txt -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_T_alpha 2024-08-30T17:04:54,217 copying build/lib/tcrdist/default_models/human_T_alpha/V_gene_CDR3_anchors.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_T_alpha 2024-08-30T17:04:54,219 copying build/lib/tcrdist/default_models/human_T_alpha/J_gene_CDR3_anchors.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_T_alpha 2024-08-30T17:04:54,221 copying build/lib/tcrdist/default_models/human_T_alpha/model_params.txt -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_T_alpha 2024-08-30T17:04:54,224 creating build/bdist.linux-armv7l/wheel/tcrdist/default_models/human_B_heavy 2024-08-30T17:04:54,225 copying build/lib/tcrdist/default_models/human_B_heavy/__init__.py -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_B_heavy 2024-08-30T17:04:54,227 copying build/lib/tcrdist/default_models/human_B_heavy/model_marginals.txt -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_B_heavy 2024-08-30T17:04:54,235 copying build/lib/tcrdist/default_models/human_B_heavy/V_gene_CDR3_anchors.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_B_heavy 2024-08-30T17:04:54,237 copying build/lib/tcrdist/default_models/human_B_heavy/J_gene_CDR3_anchors.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_B_heavy 2024-08-30T17:04:54,239 copying build/lib/tcrdist/default_models/human_B_heavy/model_params.txt -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/human_B_heavy 2024-08-30T17:04:54,242 creating build/bdist.linux-armv7l/wheel/tcrdist/default_models/mouse_T_alpha 2024-08-30T17:04:54,243 copying build/lib/tcrdist/default_models/mouse_T_alpha/__init__.py -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/mouse_T_alpha 2024-08-30T17:04:54,245 copying build/lib/tcrdist/default_models/mouse_T_alpha/model_marginals.txt -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/mouse_T_alpha 2024-08-30T17:04:54,249 copying build/lib/tcrdist/default_models/mouse_T_alpha/V_gene_CDR3_anchors.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/mouse_T_alpha 2024-08-30T17:04:54,251 copying build/lib/tcrdist/default_models/mouse_T_alpha/J_gene_CDR3_anchors.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/mouse_T_alpha 2024-08-30T17:04:54,253 copying build/lib/tcrdist/default_models/mouse_T_alpha/model_params.txt -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/mouse_T_alpha 2024-08-30T17:04:54,257 creating build/bdist.linux-armv7l/wheel/tcrdist/default_models/mouse_T_beta 2024-08-30T17:04:54,258 copying build/lib/tcrdist/default_models/mouse_T_beta/__init__.py -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/mouse_T_beta 2024-08-30T17:04:54,259 copying build/lib/tcrdist/default_models/mouse_T_beta/model_marginals.txt -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/mouse_T_beta 2024-08-30T17:04:54,262 copying build/lib/tcrdist/default_models/mouse_T_beta/V_gene_CDR3_anchors.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/mouse_T_beta 2024-08-30T17:04:54,264 copying build/lib/tcrdist/default_models/mouse_T_beta/J_gene_CDR3_anchors.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/mouse_T_beta 2024-08-30T17:04:54,266 copying build/lib/tcrdist/default_models/mouse_T_beta/model_params.txt -> build/bdist.linux-armv7l/wheel/./tcrdist/default_models/mouse_T_beta 2024-08-30T17:04:54,268 copying build/lib/tcrdist/olga_load_model.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,271 copying build/lib/tcrdist/repertoire.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,274 copying build/lib/tcrdist/repertoire_db.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,277 creating build/bdist.linux-armv7l/wheel/tcrdist/tests 2024-08-30T17:04:54,278 copying build/lib/tcrdist/tests/test_example_8.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,280 copying build/lib/tcrdist/tests/longtest_simulate_cdr3_w_olga.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,282 copying build/lib/tcrdist/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,283 copying build/lib/tcrdist/tests/test_example_6.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,285 copying build/lib/tcrdist/tests/test_background.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,287 copying build/lib/tcrdist/tests/test_join.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,289 copying build/lib/tcrdist/tests/test_example_14.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,291 copying build/lib/tcrdist/tests/test_example_21.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,292 copying build/lib/tcrdist/tests/test_workflow_2.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,294 copying build/lib/tcrdist/tests/test_public.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,297 copying build/lib/tcrdist/tests/test_olga_synthetic.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,299 copying build/lib/tcrdist/tests/test_example_1.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,301 copying build/lib/tcrdist/tests/test_example_13.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,303 copying build/lib/tcrdist/tests/test_repertoire.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,305 copying build/lib/tcrdist/tests/test_introduction_2.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,306 copying build/lib/tcrdist/tests/test_pgen_mouse.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,309 copying build/lib/tcrdist/tests/test_neighbors.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,311 copying build/lib/tcrdist/tests/test_example_24_centers.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,313 copying build/lib/tcrdist/tests/test_translation.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,315 copying build/lib/tcrdist/tests/test_regex.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,317 copying build/lib/tcrdist/tests/test_example_15.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,318 copying build/lib/tcrdist/tests/test_downloads.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,320 copying build/lib/tcrdist/tests/test_example_3.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,322 copying build/lib/tcrdist/tests/longtest_pgen_parallel.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,324 copying build/lib/tcrdist/tests/test_example_23.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,326 copying build/lib/tcrdist/tests/test_introduction_6.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,328 copying build/lib/tcrdist/tests/test_example_18.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,329 copying build/lib/tcrdist/tests/test_centers.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,332 copying build/lib/tcrdist/tests/test_example_16.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,334 copying build/lib/tcrdist/tests/test_example_2.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,335 copying build/lib/tcrdist/tests/test_bulkdata.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,337 copying build/lib/tcrdist/tests/test_example_20.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,339 copying build/lib/tcrdist/tests/test_introduction_3.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,341 copying build/lib/tcrdist/tests/test_example_9.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,343 copying build/lib/tcrdist/tests/test_repertoire_db.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,345 copying build/lib/tcrdist/tests/test_out_of_memory_features.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,347 copying build/lib/tcrdist/tests/test_memory.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,349 copying build/lib/tcrdist/tests/test_pgen_1.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,351 copying build/lib/tcrdist/tests/test_summarize.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,353 copying build/lib/tcrdist/tests/test_rhesus.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,355 copying build/lib/tcrdist/tests/test_rep_funcs.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,358 copying build/lib/tcrdist/tests/test_tree.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,361 copying build/lib/tcrdist/tests/test_introduction_1.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,363 copying build/lib/tcrdist/tests/test_example_22.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,366 copying build/lib/tcrdist/tests/test_example_4.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,368 copying build/lib/tcrdist/tests/test_workflow_1.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,371 copying build/lib/tcrdist/tests/test_gallery_hdiff.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,374 copying build/lib/tcrdist/tests/test_example_11.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,375 copying build/lib/tcrdist/tests/test_ecdf_example.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,378 copying build/lib/tcrdist/tests/test_diversity.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,380 copying build/lib/tcrdist/tests/test_introduction_4.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,381 copying build/lib/tcrdist/tests/test_sparse_pwrect.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,383 copying build/lib/tcrdist/tests/test_breadth.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,386 copying build/lib/tcrdist/tests/test_vdj_funcs.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,388 copying build/lib/tcrdist/tests/test_introduction_5.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,390 copying build/lib/tcrdist/tests/test_example_19.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,392 copying build/lib/tcrdist/tests/test_example_17.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,394 copying build/lib/tcrdist/tests/test_example_7.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,396 copying build/lib/tcrdist/tests/test_automatic.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,398 copying build/lib/tcrdist/tests/test_setup_tests.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,400 copying build/lib/tcrdist/tests/test_example_12.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,401 copying build/lib/tcrdist/tests/test_example_5.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,403 copying build/lib/tcrdist/tests/test_example_10.py -> build/bdist.linux-armv7l/wheel/./tcrdist/tests 2024-08-30T17:04:54,405 copying build/lib/tcrdist/ecdf.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,407 copying build/lib/tcrdist/adpt_funcs.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,410 copying build/lib/tcrdist/olga_directed.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,412 copying build/lib/tcrdist/automate.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,414 copying build/lib/tcrdist/summarize.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,417 copying build/lib/tcrdist/join.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,419 copying build/lib/tcrdist/rep_funcs.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,422 copying build/lib/tcrdist/pgen.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,424 copying build/lib/tcrdist/vdjtools_funcs.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,426 copying build/lib/tcrdist/html_colors.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,428 copying build/lib/tcrdist/public.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,431 copying build/lib/tcrdist/sample.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,434 copying build/lib/tcrdist/memory.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,436 copying build/lib/tcrdist/background.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,438 copying build/lib/tcrdist/neighbors.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,442 creating build/bdist.linux-armv7l/wheel/tcrdist/db 2024-08-30T17:04:54,443 copying build/lib/tcrdist/db/__init__.py -> build/bdist.linux-armv7l/wheel/./tcrdist/db 2024-08-30T17:04:54,445 copying build/lib/tcrdist/db/alphabeta_gammadelta_db.tsv -> build/bdist.linux-armv7l/wheel/./tcrdist/db 2024-08-30T17:04:54,455 copying build/lib/tcrdist/db/combo_xcr_2024-03-05.tsv -> build/bdist.linux-armv7l/wheel/./tcrdist/db 2024-08-30T17:04:54,487 copying build/lib/tcrdist/db/combo_xcr_2023-12-30.tsv -> build/bdist.linux-armv7l/wheel/./tcrdist/db 2024-08-30T17:04:54,507 copying build/lib/tcrdist/db/adaptive_imgt_mapping.csv -> build/bdist.linux-armv7l/wheel/./tcrdist/db 2024-08-30T17:04:54,510 copying build/lib/tcrdist/db/combo_db.tsv -> build/bdist.linux-armv7l/wheel/./tcrdist/db 2024-08-30T17:04:54,519 copying build/lib/tcrdist/paths.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,521 copying build/lib/tcrdist/regex.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,523 copying build/lib/tcrdist/rep_diff.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,525 copying build/lib/tcrdist/mappers.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,528 copying build/lib/tcrdist/breadth.py -> build/bdist.linux-armv7l/wheel/./tcrdist 2024-08-30T17:04:54,530 running install_egg_info 2024-08-30T17:04:54,562 running egg_info 2024-08-30T17:04:54,588 writing tcrdist3.egg-info/PKG-INFO 2024-08-30T17:04:54,591 writing dependency_links to tcrdist3.egg-info/dependency_links.txt 2024-08-30T17:04:54,594 writing requirements to tcrdist3.egg-info/requires.txt 2024-08-30T17:04:54,595 writing top-level names to tcrdist3.egg-info/top_level.txt 2024-08-30T17:04:54,651 reading manifest file 'tcrdist3.egg-info/SOURCES.txt' 2024-08-30T17:04:54,661 adding license file 'LICENSE' 2024-08-30T17:04:54,670 writing manifest file 'tcrdist3.egg-info/SOURCES.txt' 2024-08-30T17:04:54,671 Copying tcrdist3.egg-info to build/bdist.linux-armv7l/wheel/./tcrdist3-0.3-py3.11.egg-info 2024-08-30T17:04:54,682 running install_scripts 2024-08-30T17:04:54,698 creating build/bdist.linux-armv7l/wheel/tcrdist3-0.3.dist-info/WHEEL 2024-08-30T17:04:54,701 creating '/tmp/pip-wheel-_h390u82/tcrdist3-0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-08-30T17:04:54,703 adding 'tcrdist/__init__.py' 2024-08-30T17:04:54,706 adding 'tcrdist/adpt_funcs.py' 2024-08-30T17:04:54,708 adding 'tcrdist/automate.py' 2024-08-30T17:04:54,710 adding 'tcrdist/background.py' 2024-08-30T17:04:54,713 adding 'tcrdist/breadth.py' 2024-08-30T17:04:54,715 adding 'tcrdist/centers.py' 2024-08-30T17:04:54,718 adding 'tcrdist/diversity.py' 2024-08-30T17:04:54,720 adding 'tcrdist/ecdf.py' 2024-08-30T17:04:54,723 adding 'tcrdist/gene_pairing_plot.py' 2024-08-30T17:04:54,724 adding 'tcrdist/html_colors.py' 2024-08-30T17:04:54,726 adding 'tcrdist/join.py' 2024-08-30T17:04:54,729 adding 'tcrdist/mappers.py' 2024-08-30T17:04:54,731 adding 'tcrdist/memory.py' 2024-08-30T17:04:54,735 adding 'tcrdist/neighbors.py' 2024-08-30T17:04:54,738 adding 'tcrdist/olga_directed.py' 2024-08-30T17:04:54,742 adding 'tcrdist/olga_load_model.py' 2024-08-30T17:04:54,744 adding 'tcrdist/paths.py' 2024-08-30T17:04:54,746 adding 'tcrdist/pgen.py' 2024-08-30T17:04:54,747 adding 'tcrdist/plotting.py' 2024-08-30T17:04:54,749 adding 'tcrdist/public.py' 2024-08-30T17:04:54,751 adding 'tcrdist/regex.py' 2024-08-30T17:04:54,753 adding 'tcrdist/rep_diff.py' 2024-08-30T17:04:54,756 adding 'tcrdist/rep_funcs.py' 2024-08-30T17:04:54,759 adding 'tcrdist/repertoire.py' 2024-08-30T17:04:54,761 adding 'tcrdist/repertoire_db.py' 2024-08-30T17:04:54,763 adding 'tcrdist/sample.py' 2024-08-30T17:04:54,764 adding 'tcrdist/setup_tests.py' 2024-08-30T17:04:54,765 adding 'tcrdist/sparse.py' 2024-08-30T17:04:54,766 adding 'tcrdist/speed.py' 2024-08-30T17:04:54,768 adding 'tcrdist/summarize.py' 2024-08-30T17:04:54,770 adding 'tcrdist/swap_gene_name.py' 2024-08-30T17:04:54,771 adding 'tcrdist/tabulate.py' 2024-08-30T17:04:54,773 adding 'tcrdist/translation.py' 2024-08-30T17:04:54,777 adding 'tcrdist/tree.py' 2024-08-30T17:04:54,778 adding 'tcrdist/vdjtools_funcs.py' 2024-08-30T17:04:54,780 adding 'tcrdist/data/__init__.py' 2024-08-30T17:04:54,782 adding 'tcrdist/data/covid19/__init__.py' 2024-08-30T17:04:55,224 adding 'tcrdist/data/covid19/m60_bkgd_test_input.csv' 2024-08-30T17:04:55,250 adding 'tcrdist/data/covid19/m60_test_input.csv' 2024-08-30T17:04:55,314 adding 'tcrdist/data/covid19/mira_epitope_10_2274_LSPRWYFYY_SPRWYFYYL.tcrdist3.csv' 2024-08-30T17:04:55,327 adding 'tcrdist/data/covid19/mira_epitope_110_148_ELIRQGTDY_QELIRQGTDY_QELIRQGTDYKHW.tcrdist3.csv' 2024-08-30T17:04:55,332 adding 'tcrdist/data/covid19/mira_epitope_111_146_AEIPKEEVKPF_ASKIITLKK_SASKIITLK.tcrdist3.csv' 2024-08-30T17:04:55,336 adding 'tcrdist/data/covid19/mira_epitope_118_136_ALNTPKDHI_ATEGALNTPK.tcrdist3.csv' 2024-08-30T17:04:55,340 adding 'tcrdist/data/covid19/mira_epitope_133_102_NQKLIANQF.tcrdist3.csv' 2024-08-30T17:04:55,343 adding 'tcrdist/data/covid19/mira_epitope_140_92_NSSPDDQIGY_NTNSSPDDQIGYY_SSPDDQIGY_SSPDDQIGYY.tcrdist3.csv' 2024-08-30T17:04:55,346 adding 'tcrdist/data/covid19/mira_epitope_147_73_DLFMRIFTI_MDLFMRIFTI.tcrdist3.csv' 2024-08-30T17:04:55,349 adding 'tcrdist/data/covid19/mira_epitope_155_59_RARSVSPKL_SVSPKLFIR.tcrdist3.csv' 2024-08-30T17:04:55,398 adding 'tcrdist/data/covid19/mira_epitope_16_1683_QYIKWPWYI_YEQYIKWPW_YEQYIKWPWY.tcrdist3.csv' 2024-08-30T17:04:55,405 adding 'tcrdist/data/covid19/mira_epitope_176_44_SSTFNVPMEKLK.tcrdist3.csv' 2024-08-30T17:04:55,407 adding 'tcrdist/data/covid19/mira_epitope_183_39_RIRGGDGKM_RIRGGDGKMK.tcrdist3.csv' 2024-08-30T17:04:55,409 adding 'tcrdist/data/covid19/mira_epitope_185_39_ASQRVAGDSGFAAY_DSGFAAYSR_VAGDSGFAAY.tcrdist3.csv' 2024-08-30T17:04:55,452 adding 'tcrdist/data/covid19/mira_epitope_18_1578_FPNITNLCPF_QPTESIVRF_RFPNITNLCPF_TESIVRFPNI_VQPTESIVRF_VRFPNITNL.tcrdist3.csv' 2024-08-30T17:04:55,459 adding 'tcrdist/data/covid19/mira_epitope_192_31_FQPTNGVGY.tcrdist3.csv' 2024-08-30T17:04:55,665 adding 'tcrdist/data/covid19/mira_epitope_1_8260_HTTDPSFLGRY.tcrdist3.csv' 2024-08-30T17:04:55,719 adding 'tcrdist/data/covid19/mira_epitope_29_1097_TVLSFCAFA_VLSFCAFAV.tcrdist3.csv' 2024-08-30T17:04:55,749 adding 'tcrdist/data/covid19/mira_epitope_30_1064_KAYNVTQAF.tcrdist3.csv' 2024-08-30T17:04:55,774 adding 'tcrdist/data/covid19/mira_epitope_37_818_FGEVFNATRF_FNATRFASVY_GEVFNATRF_NATRFASVY.tcrdist3.csv' 2024-08-30T17:04:55,795 adding 'tcrdist/data/covid19/mira_epitope_44_697_FPPTSFGPL.tcrdist3.csv' 2024-08-30T17:04:55,817 adding 'tcrdist/data/covid19/mira_epitope_45_689_SYFTSDYYQL_VLHSYFTSDY_YFTSDYYQLY.tcrdist3.csv' 2024-08-30T17:04:55,834 adding 'tcrdist/data/covid19/mira_epitope_48_610_YLQPRTFL_YLQPRTFLL_YYVGYLQPRTF.tcrdist3.csv' 2024-08-30T17:04:55,852 adding 'tcrdist/data/covid19/mira_epitope_51_546_AYKTFPPTEPK_KTFPPTEPK.tcrdist3.csv' 2024-08-30T17:04:55,866 adding 'tcrdist/data/covid19/mira_epitope_53_532_NYLYRLFRK_NYNYLYRLF.tcrdist3.csv' 2024-08-30T17:04:55,881 adding 'tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.csv' 2024-08-30T17:04:55,917 adding 'tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.csv.bE5ctrl.centers.csv' 2024-08-30T17:04:55,926 adding 'tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.csv.bE5ctrl.centers.csv.ranked_centers.tsv' 2024-08-30T17:04:55,933 adding 'tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.radius.csv' 2024-08-30T17:04:55,945 adding 'tcrdist/data/covid19/mira_epitope_67_382_APHGVVFL_APHGVVFLHV_GVVFLHVTY_VVFLHVTYV.tcrdist3.csv' 2024-08-30T17:04:55,955 adding 'tcrdist/data/covid19/mira_epitope_70_345_DTDFVNEFYAY_NRDVDTDFVNEFY.tcrdist3.csv' 2024-08-30T17:04:55,963 adding 'tcrdist/data/covid19/mira_epitope_90_216_GYQPYRVVVL_PYRVVVLSF_QPYRVVVL_QPYRVVVLSF.tcrdist3.csv' 2024-08-30T17:04:55,970 adding 'tcrdist/data/covid19/mira_epitope_99_191_QECVRGTTVL.tcrdist3.csv' 2024-08-30T17:04:56,042 adding 'tcrdist/data/covid19/mira_epitope_9_2477_FLQSINFVR_FLQSINFVRI_FLYLYALVYF_GLEAPFLYLY_INFVRIIMR_LQSINFVRI_LQSINFVRII_QSINFVRII_SINFVRIIMR_VYFLQSINF_VYFLQSINFV_YFLQSINFVR_YLYALVYFL.tcrdist3.csv' 2024-08-30T17:04:56,052 adding 'tcrdist/db/__init__.py' 2024-08-30T17:04:56,055 adding 'tcrdist/db/adaptive_imgt_mapping.csv' 2024-08-30T17:04:56,122 adding 'tcrdist/db/alphabeta_gammadelta_db.tsv' 2024-08-30T17:04:56,192 adding 'tcrdist/db/combo_db.tsv' 2024-08-30T17:04:56,349 adding 'tcrdist/db/combo_xcr_2023-12-30.tsv' 2024-08-30T17:04:56,515 adding 'tcrdist/db/combo_xcr_2024-03-05.tsv' 2024-08-30T17:04:56,524 adding 'tcrdist/default_models/__init__.py' 2024-08-30T17:04:56,525 adding 'tcrdist/default_models/human_B_heavy/J_gene_CDR3_anchors.csv' 2024-08-30T17:04:56,527 adding 'tcrdist/default_models/human_B_heavy/V_gene_CDR3_anchors.csv' 2024-08-30T17:04:56,528 adding 'tcrdist/default_models/human_B_heavy/__init__.py' 2024-08-30T17:04:56,609 adding 'tcrdist/default_models/human_B_heavy/model_marginals.txt' 2024-08-30T17:04:56,619 adding 'tcrdist/default_models/human_B_heavy/model_params.txt' 2024-08-30T17:04:56,621 adding 'tcrdist/default_models/human_T_alpha/J_gene_CDR3_anchors.csv' 2024-08-30T17:04:56,622 adding 'tcrdist/default_models/human_T_alpha/V_gene_CDR3_anchors.csv' 2024-08-30T17:04:56,624 adding 'tcrdist/default_models/human_T_alpha/__init__.py' 2024-08-30T17:04:56,640 adding 'tcrdist/default_models/human_T_alpha/model_marginals.txt' 2024-08-30T17:04:56,650 adding 'tcrdist/default_models/human_T_alpha/model_params.txt' 2024-08-30T17:04:56,652 adding 'tcrdist/default_models/human_T_beta/J_gene_CDR3_anchors.csv' 2024-08-30T17:04:56,653 adding 'tcrdist/default_models/human_T_beta/V_gene_CDR3_anchors.csv' 2024-08-30T17:04:56,654 adding 'tcrdist/default_models/human_T_beta/__init__.py' 2024-08-30T17:04:56,660 adding 'tcrdist/default_models/human_T_beta/model_marginals.txt' 2024-08-30T17:04:56,667 adding 'tcrdist/default_models/human_T_beta/model_params.txt' 2024-08-30T17:04:56,669 adding 'tcrdist/default_models/mouse_T_alpha/J_gene_CDR3_anchors.csv' 2024-08-30T17:04:56,671 adding 'tcrdist/default_models/mouse_T_alpha/V_gene_CDR3_anchors.csv' 2024-08-30T17:04:56,672 adding 'tcrdist/default_models/mouse_T_alpha/__init__.py' 2024-08-30T17:04:56,691 adding 'tcrdist/default_models/mouse_T_alpha/model_marginals.txt' 2024-08-30T17:04:56,700 adding 'tcrdist/default_models/mouse_T_alpha/model_params.txt' 2024-08-30T17:04:56,702 adding 'tcrdist/default_models/mouse_T_beta/J_gene_CDR3_anchors.csv' 2024-08-30T17:04:56,703 adding 'tcrdist/default_models/mouse_T_beta/V_gene_CDR3_anchors.csv' 2024-08-30T17:04:56,704 adding 'tcrdist/default_models/mouse_T_beta/__init__.py' 2024-08-30T17:04:56,706 adding 'tcrdist/default_models/mouse_T_beta/model_marginals.txt' 2024-08-30T17:04:56,711 adding 'tcrdist/default_models/mouse_T_beta/model_params.txt' 2024-08-30T17:04:56,714 adding 'tcrdist/tests/__init__.py' 2024-08-30T17:04:56,715 adding 'tcrdist/tests/longtest_pgen_parallel.py' 2024-08-30T17:04:56,717 adding 'tcrdist/tests/longtest_simulate_cdr3_w_olga.py' 2024-08-30T17:04:56,718 adding 'tcrdist/tests/test_automatic.py' 2024-08-30T17:04:56,720 adding 'tcrdist/tests/test_background.py' 2024-08-30T17:04:56,722 adding 'tcrdist/tests/test_breadth.py' 2024-08-30T17:04:56,724 adding 'tcrdist/tests/test_bulkdata.py' 2024-08-30T17:04:56,725 adding 'tcrdist/tests/test_centers.py' 2024-08-30T17:04:56,727 adding 'tcrdist/tests/test_diversity.py' 2024-08-30T17:04:56,728 adding 'tcrdist/tests/test_downloads.py' 2024-08-30T17:04:56,729 adding 'tcrdist/tests/test_ecdf_example.py' 2024-08-30T17:04:56,730 adding 'tcrdist/tests/test_example_1.py' 2024-08-30T17:04:56,732 adding 'tcrdist/tests/test_example_10.py' 2024-08-30T17:04:56,733 adding 'tcrdist/tests/test_example_11.py' 2024-08-30T17:04:56,734 adding 'tcrdist/tests/test_example_12.py' 2024-08-30T17:04:56,736 adding 'tcrdist/tests/test_example_13.py' 2024-08-30T17:04:56,737 adding 'tcrdist/tests/test_example_14.py' 2024-08-30T17:04:56,738 adding 'tcrdist/tests/test_example_15.py' 2024-08-30T17:04:56,739 adding 'tcrdist/tests/test_example_16.py' 2024-08-30T17:04:56,741 adding 'tcrdist/tests/test_example_17.py' 2024-08-30T17:04:56,742 adding 'tcrdist/tests/test_example_18.py' 2024-08-30T17:04:56,744 adding 'tcrdist/tests/test_example_19.py' 2024-08-30T17:04:56,745 adding 'tcrdist/tests/test_example_2.py' 2024-08-30T17:04:56,746 adding 'tcrdist/tests/test_example_20.py' 2024-08-30T17:04:56,748 adding 'tcrdist/tests/test_example_21.py' 2024-08-30T17:04:56,749 adding 'tcrdist/tests/test_example_22.py' 2024-08-30T17:04:56,750 adding 'tcrdist/tests/test_example_23.py' 2024-08-30T17:04:56,752 adding 'tcrdist/tests/test_example_24_centers.py' 2024-08-30T17:04:56,753 adding 'tcrdist/tests/test_example_3.py' 2024-08-30T17:04:56,755 adding 'tcrdist/tests/test_example_4.py' 2024-08-30T17:04:56,756 adding 'tcrdist/tests/test_example_5.py' 2024-08-30T17:04:56,757 adding 'tcrdist/tests/test_example_6.py' 2024-08-30T17:04:56,758 adding 'tcrdist/tests/test_example_7.py' 2024-08-30T17:04:56,760 adding 'tcrdist/tests/test_example_8.py' 2024-08-30T17:04:56,761 adding 'tcrdist/tests/test_example_9.py' 2024-08-30T17:04:56,763 adding 'tcrdist/tests/test_gallery_hdiff.py' 2024-08-30T17:04:56,764 adding 'tcrdist/tests/test_introduction_1.py' 2024-08-30T17:04:56,765 adding 'tcrdist/tests/test_introduction_2.py' 2024-08-30T17:04:56,766 adding 'tcrdist/tests/test_introduction_3.py' 2024-08-30T17:04:56,767 adding 'tcrdist/tests/test_introduction_4.py' 2024-08-30T17:04:56,769 adding 'tcrdist/tests/test_introduction_5.py' 2024-08-30T17:04:56,770 adding 'tcrdist/tests/test_introduction_6.py' 2024-08-30T17:04:56,772 adding 'tcrdist/tests/test_join.py' 2024-08-30T17:04:56,773 adding 'tcrdist/tests/test_memory.py' 2024-08-30T17:04:56,775 adding 'tcrdist/tests/test_neighbors.py' 2024-08-30T17:04:56,776 adding 'tcrdist/tests/test_olga_synthetic.py' 2024-08-30T17:04:56,778 adding 'tcrdist/tests/test_out_of_memory_features.py' 2024-08-30T17:04:56,779 adding 'tcrdist/tests/test_pgen_1.py' 2024-08-30T17:04:56,780 adding 'tcrdist/tests/test_pgen_mouse.py' 2024-08-30T17:04:56,782 adding 'tcrdist/tests/test_public.py' 2024-08-30T17:04:56,783 adding 'tcrdist/tests/test_regex.py' 2024-08-30T17:04:56,785 adding 'tcrdist/tests/test_rep_funcs.py' 2024-08-30T17:04:56,786 adding 'tcrdist/tests/test_repertoire.py' 2024-08-30T17:04:56,788 adding 'tcrdist/tests/test_repertoire_db.py' 2024-08-30T17:04:56,789 adding 'tcrdist/tests/test_rhesus.py' 2024-08-30T17:04:56,790 adding 'tcrdist/tests/test_setup_tests.py' 2024-08-30T17:04:56,791 adding 'tcrdist/tests/test_sparse_pwrect.py' 2024-08-30T17:04:56,793 adding 'tcrdist/tests/test_summarize.py' 2024-08-30T17:04:56,794 adding 'tcrdist/tests/test_translation.py' 2024-08-30T17:04:56,795 adding 'tcrdist/tests/test_tree.py' 2024-08-30T17:04:56,796 adding 'tcrdist/tests/test_vdj_funcs.py' 2024-08-30T17:04:56,798 adding 'tcrdist/tests/test_workflow_1.py' 2024-08-30T17:04:56,799 adding 'tcrdist/tests/test_workflow_2.py' 2024-08-30T17:04:56,801 adding 'tcrdist3-0.3.dist-info/LICENSE' 2024-08-30T17:04:56,802 adding 'tcrdist3-0.3.dist-info/METADATA' 2024-08-30T17:04:56,803 adding 'tcrdist3-0.3.dist-info/WHEEL' 2024-08-30T17:04:56,804 adding 'tcrdist3-0.3.dist-info/top_level.txt' 2024-08-30T17:04:56,807 adding 'tcrdist3-0.3.dist-info/RECORD' 2024-08-30T17:04:56,838 removing build/bdist.linux-armv7l/wheel 2024-08-30T17:04:56,999 Building wheel for tcrdist3 (setup.py): finished with status 'done' 2024-08-30T17:04:57,026 Created wheel for tcrdist3: filename=tcrdist3-0.3-py3-none-any.whl size=2527389 sha256=5487cb99efe684aade196307efb2193903ebdaac245bda8bace2819a03b4b8d5 2024-08-30T17:04:57,028 Stored in directory: /tmp/pip-ephem-wheel-cache-sq_zrxxn/wheels/d1/ce/46/b6b8acf91d9041a8f8a525a61c81829d48b7e80bbeb6967ea3 2024-08-30T17:04:57,043 Successfully built tcrdist3 2024-08-30T17:04:57,115 Removed build tracker: '/tmp/pip-build-tracker-zqjen8uc'