2024-09-06T10:11:49,996 Created temporary directory: /tmp/pip-build-tracker-cz92gxmi 2024-09-06T10:11:49,997 Initialized build tracking at /tmp/pip-build-tracker-cz92gxmi 2024-09-06T10:11:49,998 Created build tracker: /tmp/pip-build-tracker-cz92gxmi 2024-09-06T10:11:49,998 Entered build tracker: /tmp/pip-build-tracker-cz92gxmi 2024-09-06T10:11:49,999 Created temporary directory: /tmp/pip-wheel-izqhu8tt 2024-09-06T10:11:50,003 Created temporary directory: /tmp/pip-ephem-wheel-cache-me0x1szu 2024-09-06T10:11:50,045 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-09-06T10:11:50,048 2 location(s) to search for versions of cami-amber: 2024-09-06T10:11:50,048 * https://pypi.org/simple/cami-amber/ 2024-09-06T10:11:50,048 * https://www.piwheels.org/simple/cami-amber/ 2024-09-06T10:11:50,049 Fetching project page and analyzing links: https://pypi.org/simple/cami-amber/ 2024-09-06T10:11:50,049 Getting page https://pypi.org/simple/cami-amber/ 2024-09-06T10:11:50,051 Found index url https://pypi.org/simple/ 2024-09-06T10:11:50,265 Fetched page https://pypi.org/simple/cami-amber/ as application/vnd.pypi.simple.v1+json 2024-09-06T10:11:50,271 Found link https://files.pythonhosted.org/packages/23/68/3511524dda2de993f8613d26b6319bcd2b2ee4f215ae00b82b73d1e9c2b8/cami-amber-0.7.0.tar.gz (from https://pypi.org/simple/cami-amber/), version: 0.7.0 2024-09-06T10:11:50,272 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/22/05/b36682e0f8ac5378baa3c0570a4b5f6c49071f146c75eb42f49392d3394e/cami_amber-0.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,273 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/63/e0/0d76574bcf28b4c2c5e43fc34d018431c74ec9677a1340275d4cbb67c5f4/cami_amber-0.7.0-py35-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,273 Found link https://files.pythonhosted.org/packages/2c/13/b2f7d53fbcf883c6d121e76cec1a654579816a9cda3bc1a5b93c71db81b9/cami-amber-0.7.1.tar.gz (from https://pypi.org/simple/cami-amber/), version: 0.7.1 2024-09-06T10:11:50,274 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/1e/94/c31d7bebf94978fcf15531d2086e7a5760a3af68461b317b10e63fc16f84/cami_amber-0.7.1-py35-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,274 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c1/a8/992d55b11fc2e246d2de1a721a8a9e3655ca537812eef8e7e9c886343ce6/cami_amber-1.0-py3.5.egg (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,275 Found link https://files.pythonhosted.org/packages/02/85/476777c88755019c2b6b009f3fab68eb5236aa7cb6e4e5b6ce5eaf380b9d/cami-amber-1.0.1.tar.gz (from https://pypi.org/simple/cami-amber/), version: 1.0.1 2024-09-06T10:11:50,276 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/49/fd/8f04d84405ec570ef5a59d794fa66712fe11049f38fb68e39b8e9d0e3c31/cami_amber-1.0.1-py35-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,277 Found link https://files.pythonhosted.org/packages/8a/eb/1b0f9582223a15ca9f1f53fb570cd3c9022a2d7fc5eab35538a6dce73cd2/cami-amber-1.0.2.tar.gz (from https://pypi.org/simple/cami-amber/), version: 1.0.2 2024-09-06T10:11:50,278 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/0c/93/7d228c4705aa324acb9632afb58d88ed8e5102fb8ada980552dd2fb7c3d3/cami_amber-1.0.2-py35-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,278 Found link https://files.pythonhosted.org/packages/46/12/f7f44ec20d37b71345f19751b91252519e8fc0850d6a62b1bb58c400b619/cami-amber-2.0.0.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.0 2024-09-06T10:11:50,279 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/5c/91/4191a0687e1d1d6cffe9d8998abcf0e8cfc7606e208bf4862231ec6682f4/cami_amber-2.0.0-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,280 Found link https://files.pythonhosted.org/packages/74/45/122265635d0fa0eb7ec210d51248bbd8eafdf24615337595f4d098b837a3/cami-amber-2.0.0.post0.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.0.post0 2024-09-06T10:11:50,280 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/5e/c0/0f32aef8951f3bc37e1aeece6c5cdd99188ea04580dfb5b5438d94096495/cami_amber-2.0.0.post0-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,281 Found link https://files.pythonhosted.org/packages/02/7b/72b90815a23a64644881103082f29cc5e640149cf8fcef86033939a48118/cami-amber-2.0.1.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.1 2024-09-06T10:11:50,281 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/f6/08/cfb0604700e16b488e3a790722ea9862c2f15c759832a466c32f6b63f066/cami_amber-2.0.1-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,282 Found link https://files.pythonhosted.org/packages/da/15/9e4709a9944c6c1b77b7d149fd1e665d6c844bfeb7ae2a4a1d406c021686/cami-amber-2.0.2.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.2 2024-09-06T10:11:50,282 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/40/68/60828147f757e9414ade4490e525434f23031959adb8490f013effe901af/cami_amber-2.0.2-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,283 Found link https://files.pythonhosted.org/packages/e5/8f/d5414f651987baf3f5693675613e706dca91364e6ec8db4d1d3c12b042a5/cami-amber-2.0.3.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.3 2024-09-06T10:11:50,283 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/e2/78/a10cbefe45f4bc26839eaad191d8922cb34df4deffcdc1f0f84bfb3efc62/cami_amber-2.0.3-py37-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,284 Found link https://files.pythonhosted.org/packages/36/ad/e10d1a2d258eb52797ab88e1af0a043f4cfda8420af96a11432ebc75bcf9/cami-amber-2.0.4.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.4 2024-09-06T10:11:50,285 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/2e/37/923fc1cc70fdc49821e73732f1909a4f7d67e4ff2ff88149d5929d07880f/cami_amber-2.0.4-py311-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,285 Found link https://files.pythonhosted.org/packages/ea/69/a93fdeb73dff7b88b61c774c783a05befd1861cdcd4abecb67c6becd37b0/cami-amber-2.0.5.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.5 2024-09-06T10:11:50,286 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/c1/dd/b784586ce1e84bd311529925ace764d57d44e371de7967399a61ed63e705/cami_amber-2.0.5-py311-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,287 Found link https://files.pythonhosted.org/packages/49/54/9ba4ca1f9c4c10a2b049f184d6bcb69cdbf41031e5db82b880425e089682/cami-amber-2.0.6.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.6 2024-09-06T10:11:50,287 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/6c/86/210f414522297ba9faf8466934b8d6ebb460c2a40705d8f76f6528debf9d/cami_amber-2.0.6-py311-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,288 Found link https://files.pythonhosted.org/packages/d6/72/509bf5669b8d271f53a24400272d5e350d2f779d848959a353631683173e/cami-amber-2.0.7.tar.gz (from https://pypi.org/simple/cami-amber/), version: 2.0.7 2024-09-06T10:11:50,289 Skipping link: No binaries permitted for cami-amber: https://files.pythonhosted.org/packages/43/f8/efea5e1f7a44fb9a7e47f7e53fa3e269791a0953ea901674767d66aa73d0/cami_amber-2.0.7-py311-none-any.whl (from https://pypi.org/simple/cami-amber/) 2024-09-06T10:11:50,289 Fetching project page and analyzing links: https://www.piwheels.org/simple/cami-amber/ 2024-09-06T10:11:50,290 Getting page https://www.piwheels.org/simple/cami-amber/ 2024-09-06T10:11:50,292 Found index url https://www.piwheels.org/simple/ 2024-09-06T10:11:50,523 Fetched page https://www.piwheels.org/simple/cami-amber/ as text/html 2024-09-06T10:11:50,527 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.6-py311-none-any.whl#sha256=ee092e5039ba75444c533e1c2177c605ff5f5740698e8f90ae7e1c98413c483c (from https://www.piwheels.org/simple/cami-amber/) 2024-09-06T10:11:50,528 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.5-py311-none-any.whl#sha256=3fa1d8f6c550d0a2e18589919d10512f18034b7cc88d3b6b00249c79a503856d (from https://www.piwheels.org/simple/cami-amber/) 2024-09-06T10:11:50,529 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.4-py311-none-any.whl#sha256=b6257b65ca7d44d7909646d3c301ba6b0e615358f4589d5efa3aafcfd1cc7fc2 (from https://www.piwheels.org/simple/cami-amber/) 2024-09-06T10:11:50,529 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.3-py37-none-any.whl#sha256=43e9b1f777c16118cbd4346acedb15bf93f4a488404968f8cdb017dd9d953f75 (from https://www.piwheels.org/simple/cami-amber/) 2024-09-06T10:11:50,529 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.2-py37-none-any.whl#sha256=f5e79dc1ca87ea7359d46bf69926370b7482619626fd263966f71e8aeb52dad9 (from https://www.piwheels.org/simple/cami-amber/) 2024-09-06T10:11:50,530 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.1-py37-none-any.whl#sha256=e1a290dac9f6970409cffcbd9f85afca7cf19271cac91c4df05cbd683320d74a (from https://www.piwheels.org/simple/cami-amber/) 2024-09-06T10:11:50,530 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.0.post0-py37-none-any.whl#sha256=bd25921e8c4082456919a9f5ddeecf11d286ca16fad409649a43e0147aea9ec1 (from https://www.piwheels.org/simple/cami-amber/) 2024-09-06T10:11:50,531 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-2.0.0-py37-none-any.whl#sha256=815a88a2479745bb23b1535d60fc24c49aa0355f047a922328b4ce53ec3c4a23 (from https://www.piwheels.org/simple/cami-amber/) 2024-09-06T10:11:50,531 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-1.0.2-py35-none-any.whl#sha256=24717a5f14b57746d37d10a094941e156afddb4d306e21522f716fcc6172c8bd (from https://www.piwheels.org/simple/cami-amber/) 2024-09-06T10:11:50,532 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-1.0.1-py35-none-any.whl#sha256=e8127504b71ae8754b1656e8236d2842f806565d74151745232fcce6035f4f77 (from https://www.piwheels.org/simple/cami-amber/) 2024-09-06T10:11:50,533 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-0.7.1-py35-none-any.whl#sha256=cf020ddd1822ae33b98eb89cc6fcd7554b2f83509561ec216147f9fde7151e47 (from https://www.piwheels.org/simple/cami-amber/) 2024-09-06T10:11:50,533 Skipping link: No binaries permitted for cami-amber: https://www.piwheels.org/simple/cami-amber/cami_amber-0.7.0-py2.py3-none-any.whl#sha256=5c465a4c2a36470abed50ea87626ea0e314d7241c074550d4ad5a61c149535ac (from https://www.piwheels.org/simple/cami-amber/) 2024-09-06T10:11:50,534 Skipping link: not a file: https://www.piwheels.org/simple/cami-amber/ 2024-09-06T10:11:50,534 Skipping link: not a file: https://pypi.org/simple/cami-amber/ 2024-09-06T10:11:50,553 Given no hashes to check 1 links for project 'cami-amber': discarding no candidates 2024-09-06T10:11:50,555 Collecting cami-amber==2.0.7 2024-09-06T10:11:50,557 Created temporary directory: /tmp/pip-unpack-jgy6463v 2024-09-06T10:11:50,767 Downloading cami-amber-2.0.7.tar.gz (66 kB) 2024-09-06T10:11:50,892 Added cami-amber==2.0.7 from https://files.pythonhosted.org/packages/d6/72/509bf5669b8d271f53a24400272d5e350d2f779d848959a353631683173e/cami-amber-2.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-cz92gxmi' 2024-09-06T10:11:50,893 Running setup.py (path:/tmp/pip-wheel-izqhu8tt/cami-amber_d71cc2a11b104d88a141848ad61c62dc/setup.py) egg_info for package cami-amber 2024-09-06T10:11:50,894 Created temporary directory: /tmp/pip-pip-egg-info-iaal0f6p 2024-09-06T10:11:50,895 Preparing metadata (setup.py): started 2024-09-06T10:11:50,896 Running command python setup.py egg_info 2024-09-06T10:11:51,445 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-09-06T10:11:51,445 !! 2024-09-06T10:11:51,446 ******************************************************************************** 2024-09-06T10:11:51,447 Usage of dash-separated 'python-tag' will not be supported in future 2024-09-06T10:11:51,447 versions. Please use the underscore name 'python_tag' instead. 2024-09-06T10:11:51,448 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-09-06T10:11:51,449 or your builds will no longer be supported. 2024-09-06T10:11:51,450 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-09-06T10:11:51,450 ******************************************************************************** 2024-09-06T10:11:51,451 !! 2024-09-06T10:11:51,452 opt = self.warn_dash_deprecation(opt, section) 2024-09-06T10:11:51,968 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-09-06T10:11:51,969 !! 2024-09-06T10:11:51,970 ******************************************************************************** 2024-09-06T10:11:51,970 Usage of dash-separated 'python-tag' will not be supported in future 2024-09-06T10:11:51,971 versions. Please use the underscore name 'python_tag' instead. 2024-09-06T10:11:51,973 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-09-06T10:11:51,973 or your builds will no longer be supported. 2024-09-06T10:11:51,974 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-09-06T10:11:51,975 ******************************************************************************** 2024-09-06T10:11:51,976 !! 2024-09-06T10:11:51,977 opt = self.warn_dash_deprecation(opt, section) 2024-09-06T10:11:52,010 running egg_info 2024-09-06T10:11:52,011 creating /tmp/pip-pip-egg-info-iaal0f6p/cami_amber.egg-info 2024-09-06T10:11:52,037 writing /tmp/pip-pip-egg-info-iaal0f6p/cami_amber.egg-info/PKG-INFO 2024-09-06T10:11:52,041 writing dependency_links to /tmp/pip-pip-egg-info-iaal0f6p/cami_amber.egg-info/dependency_links.txt 2024-09-06T10:11:52,043 writing requirements to /tmp/pip-pip-egg-info-iaal0f6p/cami_amber.egg-info/requires.txt 2024-09-06T10:11:52,044 writing top-level names to /tmp/pip-pip-egg-info-iaal0f6p/cami_amber.egg-info/top_level.txt 2024-09-06T10:11:52,045 writing manifest file '/tmp/pip-pip-egg-info-iaal0f6p/cami_amber.egg-info/SOURCES.txt' 2024-09-06T10:11:52,158 reading manifest file '/tmp/pip-pip-egg-info-iaal0f6p/cami_amber.egg-info/SOURCES.txt' 2024-09-06T10:11:52,159 reading manifest template 'MANIFEST.in' 2024-09-06T10:11:52,161 adding license file 'LICENSE' 2024-09-06T10:11:52,163 writing manifest file '/tmp/pip-pip-egg-info-iaal0f6p/cami_amber.egg-info/SOURCES.txt' 2024-09-06T10:11:52,276 Preparing metadata (setup.py): finished with status 'done' 2024-09-06T10:11:52,281 Source in /tmp/pip-wheel-izqhu8tt/cami-amber_d71cc2a11b104d88a141848ad61c62dc has version 2.0.7, which satisfies requirement cami-amber==2.0.7 from https://files.pythonhosted.org/packages/d6/72/509bf5669b8d271f53a24400272d5e350d2f779d848959a353631683173e/cami-amber-2.0.7.tar.gz 2024-09-06T10:11:52,282 Removed cami-amber==2.0.7 from https://files.pythonhosted.org/packages/d6/72/509bf5669b8d271f53a24400272d5e350d2f779d848959a353631683173e/cami-amber-2.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-cz92gxmi' 2024-09-06T10:11:52,290 Created temporary directory: /tmp/pip-unpack-m78lrfo0 2024-09-06T10:11:52,291 Created temporary directory: /tmp/pip-unpack-1bqfjlvs 2024-09-06T10:11:52,292 Building wheels for collected packages: cami-amber 2024-09-06T10:11:52,296 Created temporary directory: /tmp/pip-wheel-j8nnlfdw 2024-09-06T10:11:52,297 Building wheel for cami-amber (setup.py): started 2024-09-06T10:11:52,298 Destination directory: /tmp/pip-wheel-j8nnlfdw 2024-09-06T10:11:52,299 Running command python setup.py bdist_wheel 2024-09-06T10:11:52,818 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-09-06T10:11:52,818 !! 2024-09-06T10:11:52,819 ******************************************************************************** 2024-09-06T10:11:52,819 Usage of dash-separated 'python-tag' will not be supported in future 2024-09-06T10:11:52,820 versions. Please use the underscore name 'python_tag' instead. 2024-09-06T10:11:52,821 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-09-06T10:11:52,821 or your builds will no longer be supported. 2024-09-06T10:11:52,822 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-09-06T10:11:52,823 ******************************************************************************** 2024-09-06T10:11:52,824 !! 2024-09-06T10:11:52,824 opt = self.warn_dash_deprecation(opt, section) 2024-09-06T10:11:53,335 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-09-06T10:11:53,335 !! 2024-09-06T10:11:53,337 ******************************************************************************** 2024-09-06T10:11:53,337 Usage of dash-separated 'python-tag' will not be supported in future 2024-09-06T10:11:53,338 versions. Please use the underscore name 'python_tag' instead. 2024-09-06T10:11:53,340 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-09-06T10:11:53,340 or your builds will no longer be supported. 2024-09-06T10:11:53,341 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-09-06T10:11:53,342 ******************************************************************************** 2024-09-06T10:11:53,343 !! 2024-09-06T10:11:53,344 opt = self.warn_dash_deprecation(opt, section) 2024-09-06T10:11:53,347 running bdist_wheel 2024-09-06T10:11:53,486 running build 2024-09-06T10:11:53,487 running build_py 2024-09-06T10:11:53,518 creating build 2024-09-06T10:11:53,519 creating build/lib 2024-09-06T10:11:53,520 creating build/lib/cami_amber 2024-09-06T10:11:53,521 copying cami_amber/plot_by_genome.py -> build/lib/cami_amber 2024-09-06T10:11:53,523 copying cami_amber/plots.py -> build/lib/cami_amber 2024-09-06T10:11:53,526 copying cami_amber/amber_html.py -> build/lib/cami_amber 2024-09-06T10:11:53,529 copying cami_amber/__init__.py -> build/lib/cami_amber 2024-09-06T10:11:53,531 copying cami_amber/binning_classes.py -> build/lib/cami_amber 2024-09-06T10:11:53,534 copying cami_amber/unifrac_distance.py -> build/lib/cami_amber 2024-09-06T10:11:53,536 copying cami_amber/precision_recall_per_bin.py -> build/lib/cami_amber 2024-09-06T10:11:53,539 copying cami_amber/evaluate.py -> build/lib/cami_amber 2024-09-06T10:11:53,543 creating build/lib/cami_amber/utils 2024-09-06T10:11:53,544 copying cami_amber/utils/argparse_parents.py -> build/lib/cami_amber/utils 2024-09-06T10:11:53,546 copying cami_amber/utils/load_data.py -> build/lib/cami_amber/utils 2024-09-06T10:11:53,549 copying cami_amber/utils/convert_fasta_bins_to_biobox_format.py -> build/lib/cami_amber/utils 2024-09-06T10:11:53,551 copying cami_amber/utils/__init__.py -> build/lib/cami_amber/utils 2024-09-06T10:11:53,553 copying cami_amber/utils/add_length_column.py -> build/lib/cami_amber/utils 2024-09-06T10:11:53,554 copying cami_amber/utils/EMDUnifrac.py -> build/lib/cami_amber/utils 2024-09-06T10:11:53,556 copying cami_amber/utils/labels.py -> build/lib/cami_amber/utils 2024-09-06T10:11:53,558 copying cami_amber/utils/ProfilingTools.py -> build/lib/cami_amber/utils 2024-09-06T10:11:53,561 copying cami_amber/utils/load_ncbi_taxinfo.py -> build/lib/cami_amber/utils 2024-09-06T10:11:53,565 running build_scripts 2024-09-06T10:11:53,566 creating build/scripts-3.11 2024-09-06T10:11:53,566 copying and adjusting amber.py -> build/scripts-3.11 2024-09-06T10:11:53,569 copying version.py -> build/scripts-3.11 2024-09-06T10:11:53,571 copying setup.py -> build/scripts-3.11 2024-09-06T10:11:53,572 changing mode of build/scripts-3.11/amber.py from 644 to 755 2024-09-06T10:11:53,573 changing mode of build/scripts-3.11/version.py from 644 to 755 2024-09-06T10:11:53,574 changing mode of build/scripts-3.11/setup.py from 644 to 755 2024-09-06T10:11:53,601 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-09-06T10:11:53,601 !! 2024-09-06T10:11:53,602 ******************************************************************************** 2024-09-06T10:11:53,603 Please avoid running ``setup.py`` directly. 2024-09-06T10:11:53,603 Instead, use pypa/build, pypa/installer or other 2024-09-06T10:11:53,604 standards-based tools. 2024-09-06T10:11:53,605 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-09-06T10:11:53,605 ******************************************************************************** 2024-09-06T10:11:53,607 !! 2024-09-06T10:11:53,607 self.initialize_options() 2024-09-06T10:11:53,629 installing to build/bdist.linux-armv7l/wheel 2024-09-06T10:11:53,630 running install 2024-09-06T10:11:53,655 running install_lib 2024-09-06T10:11:53,681 creating build/bdist.linux-armv7l 2024-09-06T10:11:53,682 creating build/bdist.linux-armv7l/wheel 2024-09-06T10:11:53,684 creating build/bdist.linux-armv7l/wheel/cami_amber 2024-09-06T10:11:53,685 copying build/lib/cami_amber/plot_by_genome.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-09-06T10:11:53,687 copying build/lib/cami_amber/plots.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-09-06T10:11:53,689 copying build/lib/cami_amber/amber_html.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-09-06T10:11:53,693 copying build/lib/cami_amber/__init__.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-09-06T10:11:53,695 creating build/bdist.linux-armv7l/wheel/cami_amber/utils 2024-09-06T10:11:53,696 copying build/lib/cami_amber/utils/argparse_parents.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-09-06T10:11:53,698 copying build/lib/cami_amber/utils/load_data.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-09-06T10:11:53,700 copying build/lib/cami_amber/utils/convert_fasta_bins_to_biobox_format.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-09-06T10:11:53,702 copying build/lib/cami_amber/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-09-06T10:11:53,704 copying build/lib/cami_amber/utils/add_length_column.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-09-06T10:11:53,705 copying build/lib/cami_amber/utils/EMDUnifrac.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-09-06T10:11:53,707 copying build/lib/cami_amber/utils/labels.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-09-06T10:11:53,710 copying build/lib/cami_amber/utils/ProfilingTools.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-09-06T10:11:53,713 copying build/lib/cami_amber/utils/load_ncbi_taxinfo.py -> build/bdist.linux-armv7l/wheel/./cami_amber/utils 2024-09-06T10:11:53,715 copying build/lib/cami_amber/binning_classes.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-09-06T10:11:53,718 copying build/lib/cami_amber/unifrac_distance.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-09-06T10:11:53,720 copying build/lib/cami_amber/precision_recall_per_bin.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-09-06T10:11:53,722 copying build/lib/cami_amber/evaluate.py -> build/bdist.linux-armv7l/wheel/./cami_amber 2024-09-06T10:11:53,724 running install_egg_info 2024-09-06T10:11:53,755 running egg_info 2024-09-06T10:11:53,780 writing cami_amber.egg-info/PKG-INFO 2024-09-06T10:11:53,784 writing dependency_links to cami_amber.egg-info/dependency_links.txt 2024-09-06T10:11:53,786 writing requirements to cami_amber.egg-info/requires.txt 2024-09-06T10:11:53,787 writing top-level names to cami_amber.egg-info/top_level.txt 2024-09-06T10:11:53,816 reading manifest file 'cami_amber.egg-info/SOURCES.txt' 2024-09-06T10:11:53,819 reading manifest template 'MANIFEST.in' 2024-09-06T10:11:53,820 adding license file 'LICENSE' 2024-09-06T10:11:53,823 writing manifest file 'cami_amber.egg-info/SOURCES.txt' 2024-09-06T10:11:53,824 Copying cami_amber.egg-info to build/bdist.linux-armv7l/wheel/./cami_amber-2.0.7-py3.11.egg-info 2024-09-06T10:11:53,834 running install_scripts 2024-09-06T10:11:53,835 creating build/bdist.linux-armv7l/wheel/cami_amber-2.0.7.data 2024-09-06T10:11:53,835 creating build/bdist.linux-armv7l/wheel/cami_amber-2.0.7.data/scripts 2024-09-06T10:11:53,837 copying build/scripts-3.11/amber.py -> build/bdist.linux-armv7l/wheel/cami_amber-2.0.7.data/scripts 2024-09-06T10:11:53,839 copying build/scripts-3.11/version.py -> build/bdist.linux-armv7l/wheel/cami_amber-2.0.7.data/scripts 2024-09-06T10:11:53,841 copying build/scripts-3.11/setup.py -> build/bdist.linux-armv7l/wheel/cami_amber-2.0.7.data/scripts 2024-09-06T10:11:53,843 changing mode of build/bdist.linux-armv7l/wheel/cami_amber-2.0.7.data/scripts/amber.py to 755 2024-09-06T10:11:53,843 changing mode of build/bdist.linux-armv7l/wheel/cami_amber-2.0.7.data/scripts/version.py to 755 2024-09-06T10:11:53,844 changing mode of build/bdist.linux-armv7l/wheel/cami_amber-2.0.7.data/scripts/setup.py to 755 2024-09-06T10:11:53,861 creating build/bdist.linux-armv7l/wheel/cami_amber-2.0.7.dist-info/WHEEL 2024-09-06T10:11:53,864 creating '/tmp/pip-wheel-j8nnlfdw/cami_amber-2.0.7-py311-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-09-06T10:11:53,866 adding 'cami_amber/__init__.py' 2024-09-06T10:11:53,870 adding 'cami_amber/amber_html.py' 2024-09-06T10:11:53,875 adding 'cami_amber/binning_classes.py' 2024-09-06T10:11:53,877 adding 'cami_amber/evaluate.py' 2024-09-06T10:11:53,879 adding 'cami_amber/plot_by_genome.py' 2024-09-06T10:11:53,882 adding 'cami_amber/plots.py' 2024-09-06T10:11:53,884 adding 'cami_amber/precision_recall_per_bin.py' 2024-09-06T10:11:53,886 adding 'cami_amber/unifrac_distance.py' 2024-09-06T10:11:53,888 adding 'cami_amber/utils/EMDUnifrac.py' 2024-09-06T10:11:53,890 adding 'cami_amber/utils/ProfilingTools.py' 2024-09-06T10:11:53,891 adding 'cami_amber/utils/__init__.py' 2024-09-06T10:11:53,893 adding 'cami_amber/utils/add_length_column.py' 2024-09-06T10:11:53,894 adding 'cami_amber/utils/argparse_parents.py' 2024-09-06T10:11:53,896 adding 'cami_amber/utils/convert_fasta_bins_to_biobox_format.py' 2024-09-06T10:11:53,898 adding 'cami_amber/utils/labels.py' 2024-09-06T10:11:53,900 adding 'cami_amber/utils/load_data.py' 2024-09-06T10:11:53,901 adding 'cami_amber/utils/load_ncbi_taxinfo.py' 2024-09-06T10:11:53,904 adding 'cami_amber-2.0.7.data/scripts/amber.py' 2024-09-06T10:11:53,905 adding 'cami_amber-2.0.7.data/scripts/setup.py' 2024-09-06T10:11:53,907 adding 'cami_amber-2.0.7.data/scripts/version.py' 2024-09-06T10:11:53,914 adding 'cami_amber-2.0.7.dist-info/LICENSE' 2024-09-06T10:11:53,916 adding 'cami_amber-2.0.7.dist-info/METADATA' 2024-09-06T10:11:53,917 adding 'cami_amber-2.0.7.dist-info/WHEEL' 2024-09-06T10:11:53,918 adding 'cami_amber-2.0.7.dist-info/top_level.txt' 2024-09-06T10:11:53,919 adding 'cami_amber-2.0.7.dist-info/RECORD' 2024-09-06T10:11:53,921 removing build/bdist.linux-armv7l/wheel 2024-09-06T10:11:54,043 Building wheel for cami-amber (setup.py): finished with status 'done' 2024-09-06T10:11:54,047 Created wheel for cami-amber: filename=cami_amber-2.0.7-py311-none-any.whl size=72019 sha256=26b98c780a843468aaee5873d1620ef0e55ca991728bf1dc95b3b380000f3db5 2024-09-06T10:11:54,048 Stored in directory: /tmp/pip-ephem-wheel-cache-me0x1szu/wheels/16/7d/98/97f2d8b44afd8d2ec0c531a65a89daa1c1a1f2572260181beb 2024-09-06T10:11:54,062 Successfully built cami-amber 2024-09-06T10:11:54,067 Removed build tracker: '/tmp/pip-build-tracker-cz92gxmi'