2024-09-14T15:24:11,441 Created temporary directory: /tmp/pip-build-tracker-7oemxis5 2024-09-14T15:24:11,442 Initialized build tracking at /tmp/pip-build-tracker-7oemxis5 2024-09-14T15:24:11,443 Created build tracker: /tmp/pip-build-tracker-7oemxis5 2024-09-14T15:24:11,443 Entered build tracker: /tmp/pip-build-tracker-7oemxis5 2024-09-14T15:24:11,444 Created temporary directory: /tmp/pip-wheel-1lvmit9o 2024-09-14T15:24:11,448 Created temporary directory: /tmp/pip-ephem-wheel-cache-fkq919e6 2024-09-14T15:24:11,492 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-09-14T15:24:11,495 2 location(s) to search for versions of wgs-analysis: 2024-09-14T15:24:11,495 * https://pypi.org/simple/wgs-analysis/ 2024-09-14T15:24:11,495 * https://www.piwheels.org/simple/wgs-analysis/ 2024-09-14T15:24:11,496 Fetching project page and analyzing links: https://pypi.org/simple/wgs-analysis/ 2024-09-14T15:24:11,497 Getting page https://pypi.org/simple/wgs-analysis/ 2024-09-14T15:24:11,498 Found index url https://pypi.org/simple/ 2024-09-14T15:24:11,713 Fetched page https://pypi.org/simple/wgs-analysis/ as application/vnd.pypi.simple.v1+json 2024-09-14T15:24:11,714 Found link https://files.pythonhosted.org/packages/ea/41/e71b578f8e83982d7807eb45a68c072a55c919b9800542fdff88ee5e5b29/wgs_analysis-0.0.3.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.3 2024-09-14T15:24:11,715 Found link https://files.pythonhosted.org/packages/5e/4f/9c5fb434c620bd827da77df5c6fd3464951f6c1b9cb064baa81069dbeb30/wgs_analysis-0.0.4.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.4 2024-09-14T15:24:11,716 Found link https://files.pythonhosted.org/packages/ed/34/ebc409184e6fe5e6ef11da4afcb409c6ed8a1e94bbdaf21ae8dd106cc77d/wgs_analysis-0.0.5.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.5 2024-09-14T15:24:11,717 Found link https://files.pythonhosted.org/packages/fb/c8/861aca92681a2e17d3175e83d6593d0b6dce38ea4896d9798c0fc4273eeb/wgs_analysis-0.0.6.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.6 2024-09-14T15:24:11,717 Fetching project page and analyzing links: https://www.piwheels.org/simple/wgs-analysis/ 2024-09-14T15:24:11,718 Getting page https://www.piwheels.org/simple/wgs-analysis/ 2024-09-14T15:24:11,719 Found index url https://www.piwheels.org/simple/ 2024-09-14T15:24:11,876 Fetched page https://www.piwheels.org/simple/wgs-analysis/ as text/html 2024-09-14T15:24:11,878 Skipping link: No binaries permitted for wgs-analysis: https://www.piwheels.org/simple/wgs-analysis/wgs_analysis-0.0.5-py3-none-any.whl#sha256=1e3d9db0b923ec19958bc3323e01451d5df339a188209616ea356719dacae254 (from https://www.piwheels.org/simple/wgs-analysis/) 2024-09-14T15:24:11,879 Skipping link: No binaries permitted for wgs-analysis: https://www.piwheels.org/simple/wgs-analysis/wgs_analysis-0.0.4-py3-none-any.whl#sha256=f09cf6243200b0ec3576094096445294c5845778bfcf6c93717e1cd83b8ac53e (from https://www.piwheels.org/simple/wgs-analysis/) 2024-09-14T15:24:11,880 Skipping link: No binaries permitted for wgs-analysis: https://www.piwheels.org/simple/wgs-analysis/wgs_analysis-0.0.3-py3-none-any.whl#sha256=4ac67e1f4ba54135dfcbae668b4d17436fd92a2dd41627f0067d65bffa11f06e (from https://www.piwheels.org/simple/wgs-analysis/) 2024-09-14T15:24:11,881 Skipping link: not a file: https://www.piwheels.org/simple/wgs-analysis/ 2024-09-14T15:24:11,881 Skipping link: not a file: https://pypi.org/simple/wgs-analysis/ 2024-09-14T15:24:11,900 Given no hashes to check 1 links for project 'wgs-analysis': discarding no candidates 2024-09-14T15:24:11,902 Collecting wgs-analysis==0.0.6 2024-09-14T15:24:11,904 Created temporary directory: /tmp/pip-unpack-2c25eoe9 2024-09-14T15:24:12,115 Downloading wgs_analysis-0.0.6.tar.gz (86 kB) 2024-09-14T15:24:12,289 Added wgs-analysis==0.0.6 from https://files.pythonhosted.org/packages/fb/c8/861aca92681a2e17d3175e83d6593d0b6dce38ea4896d9798c0fc4273eeb/wgs_analysis-0.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-7oemxis5' 2024-09-14T15:24:12,290 Running setup.py (path:/tmp/pip-wheel-1lvmit9o/wgs-analysis_8bbee39377934c4eb3307c6f13ff9074/setup.py) egg_info for package wgs-analysis 2024-09-14T15:24:12,291 Created temporary directory: /tmp/pip-pip-egg-info-r180ms3q 2024-09-14T15:24:12,293 Preparing metadata (setup.py): started 2024-09-14T15:24:12,294 Running command python setup.py egg_info 2024-09-14T15:24:13,443 running egg_info 2024-09-14T15:24:13,445 creating /tmp/pip-pip-egg-info-r180ms3q/wgs_analysis.egg-info 2024-09-14T15:24:13,471 writing /tmp/pip-pip-egg-info-r180ms3q/wgs_analysis.egg-info/PKG-INFO 2024-09-14T15:24:13,474 writing dependency_links to /tmp/pip-pip-egg-info-r180ms3q/wgs_analysis.egg-info/dependency_links.txt 2024-09-14T15:24:13,476 writing top-level names to /tmp/pip-pip-egg-info-r180ms3q/wgs_analysis.egg-info/top_level.txt 2024-09-14T15:24:13,477 writing manifest file '/tmp/pip-pip-egg-info-r180ms3q/wgs_analysis.egg-info/SOURCES.txt' 2024-09-14T15:24:13,546 reading manifest file '/tmp/pip-pip-egg-info-r180ms3q/wgs_analysis.egg-info/SOURCES.txt' 2024-09-14T15:24:13,547 reading manifest template 'MANIFEST.in' 2024-09-14T15:24:13,551 writing manifest file '/tmp/pip-pip-egg-info-r180ms3q/wgs_analysis.egg-info/SOURCES.txt' 2024-09-14T15:24:13,664 Preparing metadata (setup.py): finished with status 'done' 2024-09-14T15:24:13,668 Source in /tmp/pip-wheel-1lvmit9o/wgs-analysis_8bbee39377934c4eb3307c6f13ff9074 has version 0.0.6, which satisfies requirement wgs-analysis==0.0.6 from https://files.pythonhosted.org/packages/fb/c8/861aca92681a2e17d3175e83d6593d0b6dce38ea4896d9798c0fc4273eeb/wgs_analysis-0.0.6.tar.gz 2024-09-14T15:24:13,668 Removed wgs-analysis==0.0.6 from https://files.pythonhosted.org/packages/fb/c8/861aca92681a2e17d3175e83d6593d0b6dce38ea4896d9798c0fc4273eeb/wgs_analysis-0.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-7oemxis5' 2024-09-14T15:24:13,672 Created temporary directory: /tmp/pip-unpack-2x7xr24c 2024-09-14T15:24:13,673 Created temporary directory: /tmp/pip-unpack-mjfmc8_r 2024-09-14T15:24:13,674 Building wheels for collected packages: wgs-analysis 2024-09-14T15:24:13,678 Created temporary directory: /tmp/pip-wheel-koh1rmoc 2024-09-14T15:24:13,678 Building wheel for wgs-analysis (setup.py): started 2024-09-14T15:24:13,679 Destination directory: /tmp/pip-wheel-koh1rmoc 2024-09-14T15:24:13,680 Running command python setup.py bdist_wheel 2024-09-14T15:24:14,753 running bdist_wheel 2024-09-14T15:24:14,862 running build 2024-09-14T15:24:14,863 running build_py 2024-09-14T15:24:14,867 creating build 2024-09-14T15:24:14,868 creating build/lib 2024-09-14T15:24:14,869 creating build/lib/wgs_analysis 2024-09-14T15:24:14,870 copying wgs_analysis/refgenome.py -> build/lib/wgs_analysis 2024-09-14T15:24:14,872 copying wgs_analysis/_version.py -> build/lib/wgs_analysis 2024-09-14T15:24:14,873 copying wgs_analysis/__init__.py -> build/lib/wgs_analysis 2024-09-14T15:24:14,875 creating build/lib/wgs_analysis/snvs 2024-09-14T15:24:14,876 copying wgs_analysis/snvs/mutsig.py -> build/lib/wgs_analysis/snvs 2024-09-14T15:24:14,878 copying wgs_analysis/snvs/__init__.py -> build/lib/wgs_analysis/snvs 2024-09-14T15:24:14,881 creating build/lib/wgs_analysis/utils 2024-09-14T15:24:14,881 copying wgs_analysis/utils/__init__.py -> build/lib/wgs_analysis/utils 2024-09-14T15:24:14,883 copying wgs_analysis/utils/trees.py -> build/lib/wgs_analysis/utils 2024-09-14T15:24:14,885 creating build/lib/wgs_analysis/annotation 2024-09-14T15:24:14,886 copying wgs_analysis/annotation/rearrangement.py -> build/lib/wgs_analysis/annotation 2024-09-14T15:24:14,889 copying wgs_analysis/annotation/cnv.py -> build/lib/wgs_analysis/annotation 2024-09-14T15:24:14,892 copying wgs_analysis/annotation/snv.py -> build/lib/wgs_analysis/annotation 2024-09-14T15:24:14,894 copying wgs_analysis/annotation/__init__.py -> build/lib/wgs_analysis/annotation 2024-09-14T15:24:14,896 copying wgs_analysis/annotation/position.py -> build/lib/wgs_analysis/annotation 2024-09-14T15:24:14,898 creating build/lib/wgs_analysis/algorithms 2024-09-14T15:24:14,899 copying wgs_analysis/algorithms/rearrangement.py -> build/lib/wgs_analysis/algorithms 2024-09-14T15:24:14,901 copying wgs_analysis/algorithms/merge.py -> build/lib/wgs_analysis/algorithms 2024-09-14T15:24:14,903 copying wgs_analysis/algorithms/cnv.py -> build/lib/wgs_analysis/algorithms 2024-09-14T15:24:14,904 copying wgs_analysis/algorithms/__init__.py -> build/lib/wgs_analysis/algorithms 2024-09-14T15:24:14,906 copying wgs_analysis/algorithms/tree.py -> build/lib/wgs_analysis/algorithms 2024-09-14T15:24:14,908 copying wgs_analysis/algorithms/position.py -> build/lib/wgs_analysis/algorithms 2024-09-14T15:24:14,910 creating build/lib/wgs_analysis/experiments 2024-09-14T15:24:14,911 copying wgs_analysis/experiments/design_primers.py -> build/lib/wgs_analysis/experiments 2024-09-14T15:24:14,913 copying wgs_analysis/experiments/blat_server.py -> build/lib/wgs_analysis/experiments 2024-09-14T15:24:14,915 copying wgs_analysis/experiments/design_snv_primers.py -> build/lib/wgs_analysis/experiments 2024-09-14T15:24:14,917 copying wgs_analysis/experiments/design_break_primers.py -> build/lib/wgs_analysis/experiments 2024-09-14T15:24:14,919 copying wgs_analysis/experiments/design_experiment.py -> build/lib/wgs_analysis/experiments 2024-09-14T15:24:14,921 copying wgs_analysis/experiments/design_utils.py -> build/lib/wgs_analysis/experiments 2024-09-14T15:24:14,923 copying wgs_analysis/experiments/__init__.py -> build/lib/wgs_analysis/experiments 2024-09-14T15:24:14,925 creating build/lib/wgs_analysis/tests 2024-09-14T15:24:14,926 copying wgs_analysis/tests/test_breakpoint_db.py -> build/lib/wgs_analysis/tests 2024-09-14T15:24:14,928 copying wgs_analysis/tests/__init__.py -> build/lib/wgs_analysis/tests 2024-09-14T15:24:14,930 creating build/lib/wgs_analysis/plots 2024-09-14T15:24:14,931 copying wgs_analysis/plots/circos.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,934 copying wgs_analysis/plots/utils.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,935 copying wgs_analysis/plots/rearrangement.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,937 copying wgs_analysis/plots/colors.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,939 copying wgs_analysis/plots/heatmap.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,941 copying wgs_analysis/plots/cnv.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,944 copying wgs_analysis/plots/snv.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,946 copying wgs_analysis/plots/general.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,947 copying wgs_analysis/plots/singlecell.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,950 copying wgs_analysis/plots/clones.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,951 copying wgs_analysis/plots/__init__.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,953 copying wgs_analysis/plots/trees.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,955 copying wgs_analysis/plots/positions.py -> build/lib/wgs_analysis/plots 2024-09-14T15:24:14,957 creating build/lib/wgs_analysis/tables 2024-09-14T15:24:14,958 copying wgs_analysis/tables/gene_matrix.py -> build/lib/wgs_analysis/tables 2024-09-14T15:24:14,961 copying wgs_analysis/tables/io.py -> build/lib/wgs_analysis/tables 2024-09-14T15:24:14,962 copying wgs_analysis/tables/clones.py -> build/lib/wgs_analysis/tables 2024-09-14T15:24:14,965 copying wgs_analysis/tables/__init__.py -> build/lib/wgs_analysis/tables 2024-09-14T15:24:14,966 copying wgs_analysis/tables/trees.py -> build/lib/wgs_analysis/tables 2024-09-14T15:24:14,976 creating build/lib/wgs_analysis/data 2024-09-14T15:24:14,977 copying wgs_analysis/data/GRCh37-lite.fa.fai -> build/lib/wgs_analysis/data 2024-09-14T15:24:14,979 copying wgs_analysis/data/signatures_probabilities.tsv -> build/lib/wgs_analysis/data 2024-09-14T15:24:14,982 copying wgs_analysis/data/GRCh38.fa.fai -> build/lib/wgs_analysis/data 2024-09-14T15:24:14,988 UPDATING build/lib/wgs_analysis/_version.py 2024-09-14T15:24:14,989 set build/lib/wgs_analysis/_version.py to '0.0.6' 2024-09-14T15:24:15,017 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-09-14T15:24:15,018 !! 2024-09-14T15:24:15,019 ******************************************************************************** 2024-09-14T15:24:15,020 Please avoid running ``setup.py`` directly. 2024-09-14T15:24:15,020 Instead, use pypa/build, pypa/installer or other 2024-09-14T15:24:15,021 standards-based tools. 2024-09-14T15:24:15,021 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-09-14T15:24:15,022 ******************************************************************************** 2024-09-14T15:24:15,023 !! 2024-09-14T15:24:15,023 self.initialize_options() 2024-09-14T15:24:15,045 installing to build/bdist.linux-armv7l/wheel 2024-09-14T15:24:15,045 running install 2024-09-14T15:24:15,069 running install_lib 2024-09-14T15:24:15,096 creating build/bdist.linux-armv7l 2024-09-14T15:24:15,097 creating build/bdist.linux-armv7l/wheel 2024-09-14T15:24:15,098 creating build/bdist.linux-armv7l/wheel/wgs_analysis 2024-09-14T15:24:15,099 creating build/bdist.linux-armv7l/wheel/wgs_analysis/snvs 2024-09-14T15:24:15,100 copying build/lib/wgs_analysis/snvs/mutsig.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/snvs 2024-09-14T15:24:15,103 copying build/lib/wgs_analysis/snvs/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/snvs 2024-09-14T15:24:15,105 creating build/bdist.linux-armv7l/wheel/wgs_analysis/data 2024-09-14T15:24:15,106 copying build/lib/wgs_analysis/data/GRCh37-lite.fa.fai -> build/bdist.linux-armv7l/wheel/./wgs_analysis/data 2024-09-14T15:24:15,108 copying build/lib/wgs_analysis/data/signatures_probabilities.tsv -> build/bdist.linux-armv7l/wheel/./wgs_analysis/data 2024-09-14T15:24:15,111 copying build/lib/wgs_analysis/data/GRCh38.fa.fai -> build/bdist.linux-armv7l/wheel/./wgs_analysis/data 2024-09-14T15:24:15,113 copying build/lib/wgs_analysis/refgenome.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis 2024-09-14T15:24:15,115 creating build/bdist.linux-armv7l/wheel/wgs_analysis/utils 2024-09-14T15:24:15,116 copying build/lib/wgs_analysis/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/utils 2024-09-14T15:24:15,118 copying build/lib/wgs_analysis/utils/trees.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/utils 2024-09-14T15:24:15,119 copying build/lib/wgs_analysis/_version.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis 2024-09-14T15:24:15,122 creating build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2024-09-14T15:24:15,123 copying build/lib/wgs_analysis/annotation/rearrangement.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/annotation 2024-09-14T15:24:15,125 copying build/lib/wgs_analysis/annotation/cnv.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/annotation 2024-09-14T15:24:15,127 copying build/lib/wgs_analysis/annotation/snv.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/annotation 2024-09-14T15:24:15,130 copying build/lib/wgs_analysis/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/annotation 2024-09-14T15:24:15,131 copying build/lib/wgs_analysis/annotation/position.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/annotation 2024-09-14T15:24:15,134 creating build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2024-09-14T15:24:15,135 copying build/lib/wgs_analysis/algorithms/rearrangement.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/algorithms 2024-09-14T15:24:15,137 copying build/lib/wgs_analysis/algorithms/merge.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/algorithms 2024-09-14T15:24:15,139 copying build/lib/wgs_analysis/algorithms/cnv.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/algorithms 2024-09-14T15:24:15,141 copying build/lib/wgs_analysis/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/algorithms 2024-09-14T15:24:15,143 copying build/lib/wgs_analysis/algorithms/tree.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/algorithms 2024-09-14T15:24:15,145 copying build/lib/wgs_analysis/algorithms/position.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/algorithms 2024-09-14T15:24:15,148 creating build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2024-09-14T15:24:15,148 copying build/lib/wgs_analysis/experiments/design_primers.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2024-09-14T15:24:15,151 copying build/lib/wgs_analysis/experiments/blat_server.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2024-09-14T15:24:15,153 copying build/lib/wgs_analysis/experiments/design_snv_primers.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2024-09-14T15:24:15,155 copying build/lib/wgs_analysis/experiments/design_break_primers.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2024-09-14T15:24:15,157 copying build/lib/wgs_analysis/experiments/design_experiment.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2024-09-14T15:24:15,159 copying build/lib/wgs_analysis/experiments/design_utils.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2024-09-14T15:24:15,161 copying build/lib/wgs_analysis/experiments/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/experiments 2024-09-14T15:24:15,163 creating build/bdist.linux-armv7l/wheel/wgs_analysis/tests 2024-09-14T15:24:15,164 copying build/lib/wgs_analysis/tests/test_breakpoint_db.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tests 2024-09-14T15:24:15,166 copying build/lib/wgs_analysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tests 2024-09-14T15:24:15,167 copying build/lib/wgs_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis 2024-09-14T15:24:15,170 creating build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2024-09-14T15:24:15,171 copying build/lib/wgs_analysis/plots/circos.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,173 copying build/lib/wgs_analysis/plots/utils.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,175 copying build/lib/wgs_analysis/plots/rearrangement.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,177 copying build/lib/wgs_analysis/plots/colors.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,179 copying build/lib/wgs_analysis/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,181 copying build/lib/wgs_analysis/plots/cnv.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,183 copying build/lib/wgs_analysis/plots/snv.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,185 copying build/lib/wgs_analysis/plots/general.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,187 copying build/lib/wgs_analysis/plots/singlecell.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,189 copying build/lib/wgs_analysis/plots/clones.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,191 copying build/lib/wgs_analysis/plots/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,192 copying build/lib/wgs_analysis/plots/trees.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,194 copying build/lib/wgs_analysis/plots/positions.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/plots 2024-09-14T15:24:15,197 creating build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2024-09-14T15:24:15,198 copying build/lib/wgs_analysis/tables/gene_matrix.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tables 2024-09-14T15:24:15,201 copying build/lib/wgs_analysis/tables/io.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tables 2024-09-14T15:24:15,202 copying build/lib/wgs_analysis/tables/clones.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tables 2024-09-14T15:24:15,205 copying build/lib/wgs_analysis/tables/__init__.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tables 2024-09-14T15:24:15,206 copying build/lib/wgs_analysis/tables/trees.py -> build/bdist.linux-armv7l/wheel/./wgs_analysis/tables 2024-09-14T15:24:15,208 running install_egg_info 2024-09-14T15:24:15,239 running egg_info 2024-09-14T15:24:15,265 writing wgs_analysis.egg-info/PKG-INFO 2024-09-14T15:24:15,267 writing dependency_links to wgs_analysis.egg-info/dependency_links.txt 2024-09-14T15:24:15,270 writing top-level names to wgs_analysis.egg-info/top_level.txt 2024-09-14T15:24:15,308 reading manifest file 'wgs_analysis.egg-info/SOURCES.txt' 2024-09-14T15:24:15,312 reading manifest template 'MANIFEST.in' 2024-09-14T15:24:15,317 writing manifest file 'wgs_analysis.egg-info/SOURCES.txt' 2024-09-14T15:24:15,318 Copying wgs_analysis.egg-info to build/bdist.linux-armv7l/wheel/./wgs_analysis-0.0.6-py3.11.egg-info 2024-09-14T15:24:15,325 running install_scripts 2024-09-14T15:24:15,335 creating build/bdist.linux-armv7l/wheel/wgs_analysis-0.0.6.dist-info/WHEEL 2024-09-14T15:24:15,337 creating '/tmp/pip-wheel-koh1rmoc/wgs_analysis-0.0.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-09-14T15:24:15,339 adding 'wgs_analysis/__init__.py' 2024-09-14T15:24:15,341 adding 'wgs_analysis/_version.py' 2024-09-14T15:24:15,342 adding 'wgs_analysis/refgenome.py' 2024-09-14T15:24:15,344 adding 'wgs_analysis/algorithms/__init__.py' 2024-09-14T15:24:15,345 adding 'wgs_analysis/algorithms/cnv.py' 2024-09-14T15:24:15,346 adding 'wgs_analysis/algorithms/merge.py' 2024-09-14T15:24:15,348 adding 'wgs_analysis/algorithms/position.py' 2024-09-14T15:24:15,349 adding 'wgs_analysis/algorithms/rearrangement.py' 2024-09-14T15:24:15,351 adding 'wgs_analysis/algorithms/tree.py' 2024-09-14T15:24:15,353 adding 'wgs_analysis/annotation/__init__.py' 2024-09-14T15:24:15,354 adding 'wgs_analysis/annotation/cnv.py' 2024-09-14T15:24:15,356 adding 'wgs_analysis/annotation/position.py' 2024-09-14T15:24:15,358 adding 'wgs_analysis/annotation/rearrangement.py' 2024-09-14T15:24:15,359 adding 'wgs_analysis/annotation/snv.py' 2024-09-14T15:24:15,361 adding 'wgs_analysis/data/GRCh37-lite.fa.fai' 2024-09-14T15:24:15,363 adding 'wgs_analysis/data/GRCh38.fa.fai' 2024-09-14T15:24:15,370 adding 'wgs_analysis/data/signatures_probabilities.tsv' 2024-09-14T15:24:15,372 adding 'wgs_analysis/experiments/__init__.py' 2024-09-14T15:24:15,373 adding 'wgs_analysis/experiments/blat_server.py' 2024-09-14T15:24:15,375 adding 'wgs_analysis/experiments/design_break_primers.py' 2024-09-14T15:24:15,377 adding 'wgs_analysis/experiments/design_experiment.py' 2024-09-14T15:24:15,379 adding 'wgs_analysis/experiments/design_primers.py' 2024-09-14T15:24:15,380 adding 'wgs_analysis/experiments/design_snv_primers.py' 2024-09-14T15:24:15,381 adding 'wgs_analysis/experiments/design_utils.py' 2024-09-14T15:24:15,383 adding 'wgs_analysis/plots/__init__.py' 2024-09-14T15:24:15,384 adding 'wgs_analysis/plots/circos.py' 2024-09-14T15:24:15,386 adding 'wgs_analysis/plots/clones.py' 2024-09-14T15:24:15,389 adding 'wgs_analysis/plots/cnv.py' 2024-09-14T15:24:15,390 adding 'wgs_analysis/plots/colors.py' 2024-09-14T15:24:15,391 adding 'wgs_analysis/plots/general.py' 2024-09-14T15:24:15,393 adding 'wgs_analysis/plots/heatmap.py' 2024-09-14T15:24:15,394 adding 'wgs_analysis/plots/positions.py' 2024-09-14T15:24:15,397 adding 'wgs_analysis/plots/rearrangement.py' 2024-09-14T15:24:15,398 adding 'wgs_analysis/plots/singlecell.py' 2024-09-14T15:24:15,400 adding 'wgs_analysis/plots/snv.py' 2024-09-14T15:24:15,402 adding 'wgs_analysis/plots/trees.py' 2024-09-14T15:24:15,404 adding 'wgs_analysis/plots/utils.py' 2024-09-14T15:24:15,407 adding 'wgs_analysis/snvs/__init__.py' 2024-09-14T15:24:15,408 adding 'wgs_analysis/snvs/mutsig.py' 2024-09-14T15:24:15,410 adding 'wgs_analysis/tables/__init__.py' 2024-09-14T15:24:15,412 adding 'wgs_analysis/tables/clones.py' 2024-09-14T15:24:15,414 adding 'wgs_analysis/tables/gene_matrix.py' 2024-09-14T15:24:15,415 adding 'wgs_analysis/tables/io.py' 2024-09-14T15:24:15,417 adding 'wgs_analysis/tables/trees.py' 2024-09-14T15:24:15,418 adding 'wgs_analysis/tests/__init__.py' 2024-09-14T15:24:15,419 adding 'wgs_analysis/tests/test_breakpoint_db.py' 2024-09-14T15:24:15,421 adding 'wgs_analysis/utils/__init__.py' 2024-09-14T15:24:15,422 adding 'wgs_analysis/utils/trees.py' 2024-09-14T15:24:15,424 adding 'wgs_analysis-0.0.6.dist-info/METADATA' 2024-09-14T15:24:15,425 adding 'wgs_analysis-0.0.6.dist-info/WHEEL' 2024-09-14T15:24:15,426 adding 'wgs_analysis-0.0.6.dist-info/top_level.txt' 2024-09-14T15:24:15,427 adding 'wgs_analysis-0.0.6.dist-info/RECORD' 2024-09-14T15:24:15,430 removing build/bdist.linux-armv7l/wheel 2024-09-14T15:24:15,562 Building wheel for wgs-analysis (setup.py): finished with status 'done' 2024-09-14T15:24:15,566 Created wheel for wgs-analysis: filename=wgs_analysis-0.0.6-py3-none-any.whl size=84358 sha256=dfe99a081b8e26989edf42ff50de48232bd5cfe8c66235b7fc349e54962b5212 2024-09-14T15:24:15,567 Stored in directory: /tmp/pip-ephem-wheel-cache-fkq919e6/wheels/1c/1b/20/0e5f34bad5323f88437f02e832d0d15a6ba6c59adf2c1559da 2024-09-14T15:24:15,577 Successfully built wgs-analysis 2024-09-14T15:24:15,586 Removed build tracker: '/tmp/pip-build-tracker-7oemxis5'