2024-09-17T16:21:34,952 Disabling truststore because Python version isn't 3.10+ 2024-09-17T16:21:35,451 Created temporary directory: /tmp/pip-build-tracker-2jt8tdyh 2024-09-17T16:21:35,451 Initialized build tracking at /tmp/pip-build-tracker-2jt8tdyh 2024-09-17T16:21:35,451 Created build tracker: /tmp/pip-build-tracker-2jt8tdyh 2024-09-17T16:21:35,452 Entered build tracker: /tmp/pip-build-tracker-2jt8tdyh 2024-09-17T16:21:35,452 Created temporary directory: /tmp/pip-wheel-mudk5i9e 2024-09-17T16:21:35,457 Created temporary directory: /tmp/pip-ephem-wheel-cache-kz3pev8t 2024-09-17T16:21:35,502 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-09-17T16:21:35,505 2 location(s) to search for versions of biobrigit: 2024-09-17T16:21:35,505 * https://pypi.org/simple/biobrigit/ 2024-09-17T16:21:35,505 * https://www.piwheels.org/simple/biobrigit/ 2024-09-17T16:21:35,505 Fetching project page and analyzing links: https://pypi.org/simple/biobrigit/ 2024-09-17T16:21:35,506 Getting page https://pypi.org/simple/biobrigit/ 2024-09-17T16:21:35,507 Found index url https://pypi.org/simple/ 2024-09-17T16:21:35,605 Fetched page https://pypi.org/simple/biobrigit/ as application/vnd.pypi.simple.v1+json 2024-09-17T16:21:35,606 Skipping link: No binaries permitted for biobrigit: https://files.pythonhosted.org/packages/8a/c8/8621a5ea1136c157693f17e1c96421a8f2ca1c4e4861ec13a6a2df098b9c/biobrigit-0.0.7-py2.py3-none-any.whl (from https://pypi.org/simple/biobrigit/) (requires-python:>=3.6) 2024-09-17T16:21:35,607 Found link https://files.pythonhosted.org/packages/96/42/70d94f0b01e174232da3821087efac634bb59a44cc30e0ef1cb775206ca0/biobrigit-0.0.7.tar.gz (from https://pypi.org/simple/biobrigit/) (requires-python:>=3.6), version: 0.0.7 2024-09-17T16:21:35,607 Skipping link: No binaries permitted for biobrigit: https://files.pythonhosted.org/packages/8d/e0/88481f8fdde05591f3ec25de37cf114dfcb1eb99686fdab062c7edaafa71/biobrigit-0.0.9-py3-none-any.whl (from https://pypi.org/simple/biobrigit/) (requires-python:>=3.6) 2024-09-17T16:21:35,608 Found link https://files.pythonhosted.org/packages/b6/3f/c33c5c718bbf2ec256e92bf1e46c46fcce45c43a001922244f371224cfef/biobrigit-0.0.9.tar.gz (from https://pypi.org/simple/biobrigit/) (requires-python:>=3.6), version: 0.0.9 2024-09-17T16:21:35,608 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobrigit/ 2024-09-17T16:21:35,608 Getting page https://www.piwheels.org/simple/biobrigit/ 2024-09-17T16:21:35,609 Found index url https://www.piwheels.org/simple/ 2024-09-17T16:21:35,651 Fetched page https://www.piwheels.org/simple/biobrigit/ as text/html 2024-09-17T16:21:35,652 Skipping link: No binaries permitted for biobrigit: https://www.piwheels.org/simple/biobrigit/biobrigit-0.0.7-py2.py3-none-any.whl#sha256=3ca4453988f98d3c7bf023af0a2dce45d5482108ee8ed75cc550b29bb5129c58 (from https://www.piwheels.org/simple/biobrigit/) (requires-python:>=3.6) 2024-09-17T16:21:35,653 Skipping link: not a file: https://www.piwheels.org/simple/biobrigit/ 2024-09-17T16:21:35,653 Skipping link: not a file: https://pypi.org/simple/biobrigit/ 2024-09-17T16:21:35,669 Given no hashes to check 1 links for project 'biobrigit': discarding no candidates 2024-09-17T16:21:35,671 Collecting biobrigit==0.0.9 2024-09-17T16:21:35,673 Created temporary directory: /tmp/pip-unpack-bex67k9t 2024-09-17T16:21:35,769 Downloading biobrigit-0.0.9.tar.gz (20.0 MB) 2024-09-17T16:21:40,483 Added biobrigit==0.0.9 from https://files.pythonhosted.org/packages/b6/3f/c33c5c718bbf2ec256e92bf1e46c46fcce45c43a001922244f371224cfef/biobrigit-0.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-2jt8tdyh' 2024-09-17T16:21:40,485 Running setup.py (path:/tmp/pip-wheel-mudk5i9e/biobrigit_8be47e70b5f9480eaf912c93d1d650d3/setup.py) egg_info for package biobrigit 2024-09-17T16:21:40,486 Created temporary directory: /tmp/pip-pip-egg-info-9lh94g2k 2024-09-17T16:21:40,486 Preparing metadata (setup.py): started 2024-09-17T16:21:40,487 Running command python setup.py egg_info 2024-09-17T16:21:41,366 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:268: UserWarning: Unknown distribution option: 'test_suite' 2024-09-17T16:21:41,366 warnings.warn(msg) 2024-09-17T16:21:41,366 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:268: UserWarning: Unknown distribution option: 'tests_require' 2024-09-17T16:21:41,367 warnings.warn(msg) 2024-09-17T16:21:42,797 running egg_info 2024-09-17T16:21:42,799 creating /tmp/pip-pip-egg-info-9lh94g2k/biobrigit.egg-info 2024-09-17T16:21:42,851 writing /tmp/pip-pip-egg-info-9lh94g2k/biobrigit.egg-info/PKG-INFO 2024-09-17T16:21:42,857 writing dependency_links to /tmp/pip-pip-egg-info-9lh94g2k/biobrigit.egg-info/dependency_links.txt 2024-09-17T16:21:42,859 writing entry points to /tmp/pip-pip-egg-info-9lh94g2k/biobrigit.egg-info/entry_points.txt 2024-09-17T16:21:42,862 writing requirements to /tmp/pip-pip-egg-info-9lh94g2k/biobrigit.egg-info/requires.txt 2024-09-17T16:21:42,863 writing top-level names to /tmp/pip-pip-egg-info-9lh94g2k/biobrigit.egg-info/top_level.txt 2024-09-17T16:21:42,865 writing manifest file '/tmp/pip-pip-egg-info-9lh94g2k/biobrigit.egg-info/SOURCES.txt' 2024-09-17T16:21:42,989 reading manifest file '/tmp/pip-pip-egg-info-9lh94g2k/biobrigit.egg-info/SOURCES.txt' 2024-09-17T16:21:42,992 adding license file 'LICENSE' 2024-09-17T16:21:42,995 writing manifest file '/tmp/pip-pip-egg-info-9lh94g2k/biobrigit.egg-info/SOURCES.txt' 2024-09-17T16:21:43,088 Preparing metadata (setup.py): finished with status 'done' 2024-09-17T16:21:43,093 Source in /tmp/pip-wheel-mudk5i9e/biobrigit_8be47e70b5f9480eaf912c93d1d650d3 has version 0.0.9, which satisfies requirement biobrigit==0.0.9 from https://files.pythonhosted.org/packages/b6/3f/c33c5c718bbf2ec256e92bf1e46c46fcce45c43a001922244f371224cfef/biobrigit-0.0.9.tar.gz 2024-09-17T16:21:43,094 Removed biobrigit==0.0.9 from https://files.pythonhosted.org/packages/b6/3f/c33c5c718bbf2ec256e92bf1e46c46fcce45c43a001922244f371224cfef/biobrigit-0.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-2jt8tdyh' 2024-09-17T16:21:43,106 Created temporary directory: /tmp/pip-unpack-1eqpjh9z 2024-09-17T16:21:43,107 Created temporary directory: /tmp/pip-unpack-s6it4819 2024-09-17T16:21:43,107 Building wheels for collected packages: biobrigit 2024-09-17T16:21:43,112 Created temporary directory: /tmp/pip-wheel-3p49d09k 2024-09-17T16:21:43,112 Building wheel for biobrigit (setup.py): started 2024-09-17T16:21:43,113 Destination directory: /tmp/pip-wheel-3p49d09k 2024-09-17T16:21:43,113 Running command python setup.py bdist_wheel 2024-09-17T16:21:44,199 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:268: UserWarning: Unknown distribution option: 'test_suite' 2024-09-17T16:21:44,200 warnings.warn(msg) 2024-09-17T16:21:44,200 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:268: UserWarning: Unknown distribution option: 'tests_require' 2024-09-17T16:21:44,200 warnings.warn(msg) 2024-09-17T16:21:44,765 running bdist_wheel 2024-09-17T16:21:44,944 running build 2024-09-17T16:21:44,944 running build_py 2024-09-17T16:21:44,981 creating build 2024-09-17T16:21:44,981 creating build/lib 2024-09-17T16:21:44,982 creating build/lib/biobrigit 2024-09-17T16:21:44,983 copying biobrigit/biobrigit.py -> build/lib/biobrigit 2024-09-17T16:21:44,987 copying biobrigit/__main__.py -> build/lib/biobrigit 2024-09-17T16:21:44,989 copying biobrigit/__init__.py -> build/lib/biobrigit 2024-09-17T16:21:44,991 creating build/lib/tests 2024-09-17T16:21:44,992 copying tests/__init__.py -> build/lib/tests 2024-09-17T16:21:44,994 copying tests/test_brigit.py -> build/lib/tests 2024-09-17T16:21:44,997 creating build/lib/biobrigit/utils 2024-09-17T16:21:44,998 copying biobrigit/utils/models.py -> build/lib/biobrigit/utils 2024-09-17T16:21:45,000 copying biobrigit/utils/data.py -> build/lib/biobrigit/utils 2024-09-17T16:21:45,002 copying biobrigit/utils/tools.py -> build/lib/biobrigit/utils 2024-09-17T16:21:45,004 copying biobrigit/utils/pdb_parser.py -> build/lib/biobrigit/utils 2024-09-17T16:21:45,007 copying biobrigit/utils/layers.py -> build/lib/biobrigit/utils 2024-09-17T16:21:45,008 copying biobrigit/utils/__init__.py -> build/lib/biobrigit/utils 2024-09-17T16:21:45,010 copying biobrigit/utils/scoring.py -> build/lib/biobrigit/utils 2024-09-17T16:21:45,013 creating build/lib/biobrigit/utils/stats 2024-09-17T16:21:45,014 copying biobrigit/utils/stats/__init__.py -> build/lib/biobrigit/utils/stats 2024-09-17T16:21:45,016 creating build/lib/biobrigit/utils/trained_models 2024-09-17T16:21:45,017 copying biobrigit/utils/trained_models/__init__.py -> build/lib/biobrigit/utils/trained_models 2024-09-17T16:21:45,018 running egg_info 2024-09-17T16:21:45,052 writing biobrigit.egg-info/PKG-INFO 2024-09-17T16:21:45,055 writing dependency_links to biobrigit.egg-info/dependency_links.txt 2024-09-17T16:21:45,057 writing entry points to biobrigit.egg-info/entry_points.txt 2024-09-17T16:21:45,059 writing requirements to biobrigit.egg-info/requires.txt 2024-09-17T16:21:45,061 writing top-level names to biobrigit.egg-info/top_level.txt 2024-09-17T16:21:45,102 reading manifest file 'biobrigit.egg-info/SOURCES.txt' 2024-09-17T16:21:45,105 adding license file 'LICENSE' 2024-09-17T16:21:45,108 writing manifest file 'biobrigit.egg-info/SOURCES.txt' 2024-09-17T16:21:45,113 copying biobrigit/utils/stats/gaussian_statistics.json -> build/lib/biobrigit/utils/stats 2024-09-17T16:21:45,119 copying biobrigit/utils/stats/residue_statistics.json -> build/lib/biobrigit/utils/stats 2024-09-17T16:21:45,123 copying biobrigit/utils/trained_models/BrigitCNN.bak -> build/lib/biobrigit/utils/trained_models 2024-09-17T16:21:45,602 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-09-17T16:21:45,602 !! 2024-09-17T16:21:45,602 ******************************************************************************** 2024-09-17T16:21:45,603 Please avoid running ``setup.py`` directly. 2024-09-17T16:21:45,603 Instead, use pypa/build, pypa/installer or other 2024-09-17T16:21:45,603 standards-based tools. 2024-09-17T16:21:45,603 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-09-17T16:21:45,603 ******************************************************************************** 2024-09-17T16:21:45,603 !! 2024-09-17T16:21:45,603 self.initialize_options() 2024-09-17T16:21:45,637 installing to build/bdist.linux-armv7l/wheel 2024-09-17T16:21:45,638 running install 2024-09-17T16:21:45,663 running install_lib 2024-09-17T16:21:45,712 creating build/bdist.linux-armv7l 2024-09-17T16:21:45,713 creating build/bdist.linux-armv7l/wheel 2024-09-17T16:21:45,715 creating build/bdist.linux-armv7l/wheel/biobrigit 2024-09-17T16:21:45,717 copying build/lib/biobrigit/biobrigit.py -> build/bdist.linux-armv7l/wheel/./biobrigit 2024-09-17T16:21:45,721 creating build/bdist.linux-armv7l/wheel/biobrigit/utils 2024-09-17T16:21:45,723 creating build/bdist.linux-armv7l/wheel/biobrigit/utils/stats 2024-09-17T16:21:45,725 copying build/lib/biobrigit/utils/stats/residue_statistics.json -> build/bdist.linux-armv7l/wheel/./biobrigit/utils/stats 2024-09-17T16:21:45,730 copying build/lib/biobrigit/utils/stats/gaussian_statistics.json -> build/bdist.linux-armv7l/wheel/./biobrigit/utils/stats 2024-09-17T16:21:45,739 copying build/lib/biobrigit/utils/stats/__init__.py -> build/bdist.linux-armv7l/wheel/./biobrigit/utils/stats 2024-09-17T16:21:45,741 copying build/lib/biobrigit/utils/models.py -> build/bdist.linux-armv7l/wheel/./biobrigit/utils 2024-09-17T16:21:45,744 copying build/lib/biobrigit/utils/data.py -> build/bdist.linux-armv7l/wheel/./biobrigit/utils 2024-09-17T16:21:45,748 copying build/lib/biobrigit/utils/tools.py -> build/bdist.linux-armv7l/wheel/./biobrigit/utils 2024-09-17T16:21:45,752 creating build/bdist.linux-armv7l/wheel/biobrigit/utils/trained_models 2024-09-17T16:21:45,753 copying build/lib/biobrigit/utils/trained_models/BrigitCNN.bak -> build/bdist.linux-armv7l/wheel/./biobrigit/utils/trained_models 2024-09-17T16:21:46,058 copying build/lib/biobrigit/utils/trained_models/__init__.py -> build/bdist.linux-armv7l/wheel/./biobrigit/utils/trained_models 2024-09-17T16:21:46,059 copying build/lib/biobrigit/utils/pdb_parser.py -> build/bdist.linux-armv7l/wheel/./biobrigit/utils 2024-09-17T16:21:46,062 copying build/lib/biobrigit/utils/layers.py -> build/bdist.linux-armv7l/wheel/./biobrigit/utils 2024-09-17T16:21:46,064 copying build/lib/biobrigit/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobrigit/utils 2024-09-17T16:21:46,066 copying build/lib/biobrigit/utils/scoring.py -> build/bdist.linux-armv7l/wheel/./biobrigit/utils 2024-09-17T16:21:46,068 copying build/lib/biobrigit/__main__.py -> build/bdist.linux-armv7l/wheel/./biobrigit 2024-09-17T16:21:46,070 copying build/lib/biobrigit/__init__.py -> build/bdist.linux-armv7l/wheel/./biobrigit 2024-09-17T16:21:46,073 creating build/bdist.linux-armv7l/wheel/tests 2024-09-17T16:21:46,074 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2024-09-17T16:21:46,076 copying build/lib/tests/test_brigit.py -> build/bdist.linux-armv7l/wheel/./tests 2024-09-17T16:21:46,078 running install_data 2024-09-17T16:21:46,113 creating build/bdist.linux-armv7l/wheel/biobrigit-0.0.9.data 2024-09-17T16:21:46,114 creating build/bdist.linux-armv7l/wheel/biobrigit-0.0.9.data/data 2024-09-17T16:21:46,116 copying biobrigit/utils/stats/gaussian_statistics.json -> build/bdist.linux-armv7l/wheel/biobrigit-0.0.9.data/data/. 2024-09-17T16:21:46,123 copying biobrigit/utils/stats/residue_statistics.json -> build/bdist.linux-armv7l/wheel/biobrigit-0.0.9.data/data/. 2024-09-17T16:21:46,127 copying biobrigit/utils/trained_models/BrigitCNN.bak -> build/bdist.linux-armv7l/wheel/biobrigit-0.0.9.data/data/. 2024-09-17T16:21:46,629 copying README.md -> build/bdist.linux-armv7l/wheel/biobrigit-0.0.9.data/data/. 2024-09-17T16:21:46,631 running install_egg_info 2024-09-17T16:21:46,675 Copying biobrigit.egg-info to build/bdist.linux-armv7l/wheel/./biobrigit-0.0.9-py3.9.egg-info 2024-09-17T16:21:46,688 running install_scripts 2024-09-17T16:21:46,708 creating build/bdist.linux-armv7l/wheel/biobrigit-0.0.9.dist-info/WHEEL 2024-09-17T16:21:46,710 creating '/tmp/pip-wheel-3p49d09k/biobrigit-0.0.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-09-17T16:21:46,712 adding 'biobrigit/__init__.py' 2024-09-17T16:21:46,714 adding 'biobrigit/__main__.py' 2024-09-17T16:21:46,718 adding 'biobrigit/biobrigit.py' 2024-09-17T16:21:46,719 adding 'biobrigit/utils/__init__.py' 2024-09-17T16:21:46,721 adding 'biobrigit/utils/data.py' 2024-09-17T16:21:46,723 adding 'biobrigit/utils/layers.py' 2024-09-17T16:21:46,724 adding 'biobrigit/utils/models.py' 2024-09-17T16:21:46,726 adding 'biobrigit/utils/pdb_parser.py' 2024-09-17T16:21:46,728 adding 'biobrigit/utils/scoring.py' 2024-09-17T16:21:46,730 adding 'biobrigit/utils/tools.py' 2024-09-17T16:21:46,732 adding 'biobrigit/utils/stats/__init__.py' 2024-09-17T16:21:46,752 adding 'biobrigit/utils/stats/gaussian_statistics.json' 2024-09-17T16:21:46,759 adding 'biobrigit/utils/stats/residue_statistics.json' 2024-09-17T16:21:49,974 adding 'biobrigit/utils/trained_models/BrigitCNN.bak' 2024-09-17T16:21:50,109 adding 'biobrigit/utils/trained_models/__init__.py' 2024-09-17T16:21:53,323 adding 'biobrigit-0.0.9.data/data/BrigitCNN.bak' 2024-09-17T16:21:53,459 adding 'biobrigit-0.0.9.data/data/README.md' 2024-09-17T16:21:53,479 adding 'biobrigit-0.0.9.data/data/gaussian_statistics.json' 2024-09-17T16:21:53,486 adding 'biobrigit-0.0.9.data/data/residue_statistics.json' 2024-09-17T16:21:53,490 adding 'tests/__init__.py' 2024-09-17T16:21:53,491 adding 'tests/test_brigit.py' 2024-09-17T16:21:53,493 adding 'biobrigit-0.0.9.dist-info/LICENSE' 2024-09-17T16:21:53,494 adding 'biobrigit-0.0.9.dist-info/METADATA' 2024-09-17T16:21:53,495 adding 'biobrigit-0.0.9.dist-info/WHEEL' 2024-09-17T16:21:53,496 adding 'biobrigit-0.0.9.dist-info/entry_points.txt' 2024-09-17T16:21:53,497 adding 'biobrigit-0.0.9.dist-info/top_level.txt' 2024-09-17T16:21:53,498 adding 'biobrigit-0.0.9.dist-info/RECORD' 2024-09-17T16:21:53,947 removing build/bdist.linux-armv7l/wheel 2024-09-17T16:21:54,071 Building wheel for biobrigit (setup.py): finished with status 'done' 2024-09-17T16:21:54,467 Created wheel for biobrigit: filename=biobrigit-0.0.9-py3-none-any.whl size=40053768 sha256=43a4f94f154b59d446d88a2937a1b246862c7adadb044e2c473dbecd1ed14604 2024-09-17T16:21:54,468 Stored in directory: /tmp/pip-ephem-wheel-cache-kz3pev8t/wheels/72/9e/e8/e1eaed997d9a43b2750442b5af6a4dc54d927dfde844be8c3f 2024-09-17T16:21:54,493 Successfully built biobrigit 2024-09-17T16:21:55,446 Removed build tracker: '/tmp/pip-build-tracker-2jt8tdyh'