2024-09-18T12:56:37,054 Created temporary directory: /tmp/pip-build-tracker-5z0xba4b
2024-09-18T12:56:37,056 Initialized build tracking at /tmp/pip-build-tracker-5z0xba4b
2024-09-18T12:56:37,056 Created build tracker: /tmp/pip-build-tracker-5z0xba4b
2024-09-18T12:56:37,057 Entered build tracker: /tmp/pip-build-tracker-5z0xba4b
2024-09-18T12:56:37,058 Created temporary directory: /tmp/pip-wheel-c3c614lt
2024-09-18T12:56:37,061 Created temporary directory: /tmp/pip-ephem-wheel-cache-pk30muwy
2024-09-18T12:56:37,105 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-09-18T12:56:37,108 2 location(s) to search for versions of pyrepseq:
2024-09-18T12:56:37,108 * https://pypi.org/simple/pyrepseq/
2024-09-18T12:56:37,108 * https://www.piwheels.org/simple/pyrepseq/
2024-09-18T12:56:37,109 Fetching project page and analyzing links: https://pypi.org/simple/pyrepseq/
2024-09-18T12:56:37,110 Getting page https://pypi.org/simple/pyrepseq/
2024-09-18T12:56:37,111 Found index url https://pypi.org/simple/
2024-09-18T12:56:37,325 Fetched page https://pypi.org/simple/pyrepseq/ as application/vnd.pypi.simple.v1+json
2024-09-18T12:56:37,331   Found link https://files.pythonhosted.org/packages/2a/6e/d407f221827595d7c7c6c953fbce9cbe78539177fdafd66bd0d52e91c4ec/pyrepseq-0.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1
2024-09-18T12:56:37,332   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/5c/cd/8dba70272781c74c063534ea320b7cf0f2ff331c5cf82879e4ba5f4d486f/pyrepseq-0.1.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,332   Found link https://files.pythonhosted.org/packages/93/d2/f802eda9252735e6a9f7af211f04e8e80c0be5f9fc608b2cce3711706e02/pyrepseq-0.1.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1.1
2024-09-18T12:56:37,333   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/d1/70/9e4c3a39f9b3f0bfbd18c59bd77d9238c94cb11261fbdbb586ca8cdd1fc1/pyrepseq-0.1.2-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,333   Found link https://files.pythonhosted.org/packages/6e/df/c15c0625921eba17f79e027967d3a015ec3997dc2b9f183e6630d91acab0/pyrepseq-0.1.2.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1.2
2024-09-18T12:56:37,334   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/33/e1/4054c735bc4aca16b9613f3544b23d867980b98c17a1f67e9fa5d1f067c4/pyrepseq-0.1.3-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,335   Found link https://files.pythonhosted.org/packages/4d/81/85d54e0ce44d05782f34e5258ba3410e795fbd9643270cdb0429aa2bf696/pyrepseq-0.1.3.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1.3
2024-09-18T12:56:37,335   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/b3/c7/7c52bc35a286936e52ed0245bf4b677204c805c8b8283c7b6877b6d9ea58/pyrepseq-1.0-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,336   Found link https://files.pythonhosted.org/packages/53/88/117c964bf05e99f446ee034cf644db7b38babb91c6c840fb877e68e3c715/pyrepseq-1.0.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.0
2024-09-18T12:56:37,337   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/b8/dc/b6c4e3218eaf10b532e47dbf805b72306e8552f5bc5abdc26ce34dd3da69/pyrepseq-1.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,338   Found link https://files.pythonhosted.org/packages/38/bb/4c7ec5857987459bdc64b7719ec97c4be8d4ea4c351107aba0e2d8cab594/pyrepseq-1.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.1
2024-09-18T12:56:37,338   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/d3/cf/b584a8f6511e29396c677a6f8c7f61568c1313315ff1da952a69af93c577/pyrepseq-1.2.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,339   Found link https://files.pythonhosted.org/packages/3a/9b/33c3e43636f669afed2f76afc16fa5a96d924b056231d15913d0ca9bc39d/pyrepseq-1.2.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.2.1
2024-09-18T12:56:37,340   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/cc/66/80fe2ce26a1eba7a79286c1403a09a8957951bc68b02ce56688beff4b44c/pyrepseq-1.3-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,340   Found link https://files.pythonhosted.org/packages/5c/6d/f39d9ea26b26378c25ac0dd13e534ba27876dc8c954a59d396d96ff4322c/pyrepseq-1.3.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.3
2024-09-18T12:56:37,341   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/b4/f1/6b03f75336686f711d0fe36f6619f1836ccaf6417e9755a6fa5d6a97639e/pyrepseq-1.4-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,341   Found link https://files.pythonhosted.org/packages/13/2d/1b0e6e392fa4ef967d42efe3c2a9c7a08f96636bafa36867b60ddd6e1d3a/pyrepseq-1.4.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.4
2024-09-18T12:56:37,342   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/53/1a/197e7d0dc58559d300454c395e2d19a8ec0fbf1e0628bd82e75e1481559a/pyrepseq-1.4.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,342   Found link https://files.pythonhosted.org/packages/e2/de/4c2343c1bede91e84f287acc18c4bd77475cd4e5491378ec53b3703b73bb/pyrepseq-1.4.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.4.1
2024-09-18T12:56:37,343   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/08/e4/79d0ca103ff8d66bfbe1635f5ed2b9b363baa7f3321aa7ea5ed98e21b52c/pyrepseq-1.4.2-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,343   Found link https://files.pythonhosted.org/packages/e5/1e/25f2bd41c49615d048517599dd6ef171d6f2564f3433e79f94f54eb6c5bf/pyrepseq-1.4.2.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.4.2
2024-09-18T12:56:37,344   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/e1/4c/b270fb8af021ee5fbc8e125c78ab0fc77831db0e91d4945205b5407817d6/pyrepseq-1.4.3-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,345   Found link https://files.pythonhosted.org/packages/f0/3d/efd19a946d8ccfa97649cb06e7805fd7ad368f8cf9ce09dfdfacfa2c2621/pyrepseq-1.4.3.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.4.3
2024-09-18T12:56:37,345   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/e3/f4/9adc4dc4914614a883f224cb58e90afbb92bafcbdcec88cb4b511efba1dd/pyrepseq-1.5-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,346   Found link https://files.pythonhosted.org/packages/0b/7e/152640deb6ff89d71fbc55dacd06d91e0375751c059e6970ee554624144b/pyrepseq-1.5.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.5
2024-09-18T12:56:37,346   Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/02/cd/92725ebf9797d9d9077cd645995dad21982a061fda7253032255a33ef45f/pyrepseq-1.5.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/)
2024-09-18T12:56:37,347   Found link https://files.pythonhosted.org/packages/e4/d9/b3d585e53ae5c3bb13b38fcad3b60a49ddb49ed594c837e93f2ec2f9618b/pyrepseq-1.5.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 1.5.1
2024-09-18T12:56:37,348 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyrepseq/
2024-09-18T12:56:37,348 Getting page https://www.piwheels.org/simple/pyrepseq/
2024-09-18T12:56:37,350 Found index url https://www.piwheels.org/simple/
2024-09-18T12:56:37,510 Fetched page https://www.piwheels.org/simple/pyrepseq/ as text/html
2024-09-18T12:56:37,515   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.5-py3-none-any.whl#sha256=32cf1d823cc59a6be6a7e97e6930e356b6b818f83d0578a1ff74c40902485884 (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,516   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.4.3-py3-none-any.whl#sha256=9d51f182600297c8fb401a2a953ac8436c2c49daef31ce3f5b8cc32cf0e22ef6 (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,517   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.4.2-py3-none-any.whl#sha256=4f85460ca48b01a059ce8cd5aa8155089b5472adf6a3f6f3c7cfa858c738975b (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,517   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.4.1-py3-none-any.whl#sha256=e8887fc67a460525b1e18c6ef07d15034d9f030bd621b9c36404a8168cc24097 (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,517   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.4-py3-none-any.whl#sha256=5f9323b2c4c3856be179d4612bd53da2637fa105b1ce3dbe2f42e139ee02793e (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,518   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.3-py3-none-any.whl#sha256=043211448864434ccd2638515bf080887e976d5fd58e80ae8f4e62bd7ec47acd (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,518   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.2.1-py3-none-any.whl#sha256=3827fdf914f3c447526b8d6444cb79f808d9f8ac052e7535b927b760d7c4677a (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,519   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.1-py3-none-any.whl#sha256=70461442abcbee78e7f4129129734b7fd33a3d2a409a1ed5f44f1c0929c62767 (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,519   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-1.0-py3-none-any.whl#sha256=e0ff1b66143de1d0c6a7695d6b73bb87d88015462b94678201bd60e43bae8574 (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,520   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1.3-py3-none-any.whl#sha256=dd8c3b5497b6b416298f499b916cb5f25a0b4a95fa8c442781fecf097b2b39d4 (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,520   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1.2-py3-none-any.whl#sha256=11d290404e581d46bf05739028106fb7fdc5cba61c4b27e7eb7f202a84780495 (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,521   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1.1-py3-none-any.whl#sha256=ba09350e430a07ba4ea87b20d55a5c22879b48bb644f2fcbacd0a8fd6fe5c37c (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,521   Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1-py3-none-any.whl#sha256=1bdb281f17e308d5eaa2580ceb8b2ec1faac7d29eda44a6727d2027b2c607e06 (from https://www.piwheels.org/simple/pyrepseq/)
2024-09-18T12:56:37,522 Skipping link: not a file: https://www.piwheels.org/simple/pyrepseq/
2024-09-18T12:56:37,523 Skipping link: not a file: https://pypi.org/simple/pyrepseq/
2024-09-18T12:56:37,543 Given no hashes to check 1 links for project 'pyrepseq': discarding no candidates
2024-09-18T12:56:37,545 Collecting pyrepseq==1.5.1
2024-09-18T12:56:37,547   Created temporary directory: /tmp/pip-unpack-ow1c9b8v
2024-09-18T12:56:37,757   Downloading pyrepseq-1.5.1.tar.gz (55 kB)
2024-09-18T12:56:37,887   Added pyrepseq==1.5.1 from https://files.pythonhosted.org/packages/e4/d9/b3d585e53ae5c3bb13b38fcad3b60a49ddb49ed594c837e93f2ec2f9618b/pyrepseq-1.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-5z0xba4b'
2024-09-18T12:56:37,889   Running setup.py (path:/tmp/pip-wheel-c3c614lt/pyrepseq_87cfec0aaf38451aa294f9f71fc7da65/setup.py) egg_info for package pyrepseq
2024-09-18T12:56:37,890   Created temporary directory: /tmp/pip-pip-egg-info-24edh81l
2024-09-18T12:56:37,890   Preparing metadata (setup.py): started
2024-09-18T12:56:37,892   Running command python setup.py egg_info
2024-09-18T12:56:38,971   running egg_info
2024-09-18T12:56:38,973   creating /tmp/pip-pip-egg-info-24edh81l/pyrepseq.egg-info
2024-09-18T12:56:38,999   writing /tmp/pip-pip-egg-info-24edh81l/pyrepseq.egg-info/PKG-INFO
2024-09-18T12:56:39,004   writing dependency_links to /tmp/pip-pip-egg-info-24edh81l/pyrepseq.egg-info/dependency_links.txt
2024-09-18T12:56:39,007   writing requirements to /tmp/pip-pip-egg-info-24edh81l/pyrepseq.egg-info/requires.txt
2024-09-18T12:56:39,009   writing top-level names to /tmp/pip-pip-egg-info-24edh81l/pyrepseq.egg-info/top_level.txt
2024-09-18T12:56:39,010   writing manifest file '/tmp/pip-pip-egg-info-24edh81l/pyrepseq.egg-info/SOURCES.txt'
2024-09-18T12:56:39,103   reading manifest file '/tmp/pip-pip-egg-info-24edh81l/pyrepseq.egg-info/SOURCES.txt'
2024-09-18T12:56:39,104   adding license file 'LICENSE'
2024-09-18T12:56:39,106   writing manifest file '/tmp/pip-pip-egg-info-24edh81l/pyrepseq.egg-info/SOURCES.txt'
2024-09-18T12:56:39,221   Preparing metadata (setup.py): finished with status 'done'
2024-09-18T12:56:39,225   Source in /tmp/pip-wheel-c3c614lt/pyrepseq_87cfec0aaf38451aa294f9f71fc7da65 has version 1.5.1, which satisfies requirement pyrepseq==1.5.1 from https://files.pythonhosted.org/packages/e4/d9/b3d585e53ae5c3bb13b38fcad3b60a49ddb49ed594c837e93f2ec2f9618b/pyrepseq-1.5.1.tar.gz
2024-09-18T12:56:39,226   Removed pyrepseq==1.5.1 from https://files.pythonhosted.org/packages/e4/d9/b3d585e53ae5c3bb13b38fcad3b60a49ddb49ed594c837e93f2ec2f9618b/pyrepseq-1.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-5z0xba4b'
2024-09-18T12:56:39,235 Created temporary directory: /tmp/pip-unpack-xd588vai
2024-09-18T12:56:39,236 Created temporary directory: /tmp/pip-unpack-3gesfboe
2024-09-18T12:56:39,236 Building wheels for collected packages: pyrepseq
2024-09-18T12:56:39,240   Created temporary directory: /tmp/pip-wheel-mikj98nl
2024-09-18T12:56:39,241   Building wheel for pyrepseq (setup.py): started
2024-09-18T12:56:39,242   Destination directory: /tmp/pip-wheel-mikj98nl
2024-09-18T12:56:39,242   Running command python setup.py bdist_wheel
2024-09-18T12:56:40,289   running bdist_wheel
2024-09-18T12:56:40,427   running build
2024-09-18T12:56:40,428   running build_py
2024-09-18T12:56:40,459   creating build
2024-09-18T12:56:40,460   creating build/lib
2024-09-18T12:56:40,461   creating build/lib/pyrepseq
2024-09-18T12:56:40,462   copying pyrepseq/util.py -> build/lib/pyrepseq
2024-09-18T12:56:40,464   copying pyrepseq/stats.py -> build/lib/pyrepseq
2024-09-18T12:56:40,466   copying pyrepseq/nn.py -> build/lib/pyrepseq
2024-09-18T12:56:40,469   copying pyrepseq/io.py -> build/lib/pyrepseq
2024-09-18T12:56:40,471   copying pyrepseq/__init__.py -> build/lib/pyrepseq
2024-09-18T12:56:40,473   copying pyrepseq/entropy.py -> build/lib/pyrepseq
2024-09-18T12:56:40,475   copying pyrepseq/plotting.py -> build/lib/pyrepseq
2024-09-18T12:56:40,477   copying pyrepseq/distance.py -> build/lib/pyrepseq
2024-09-18T12:56:40,480   copying pyrepseq/version.py -> build/lib/pyrepseq
2024-09-18T12:56:40,482   copying pyrepseq/clustering.py -> build/lib/pyrepseq
2024-09-18T12:56:40,484   creating build/lib/pyrepseq/metric
2024-09-18T12:56:40,485   copying pyrepseq/metric/__init__.py -> build/lib/pyrepseq/metric
2024-09-18T12:56:40,486   copying pyrepseq/metric/levenshtein.py -> build/lib/pyrepseq/metric
2024-09-18T12:56:40,488   copying pyrepseq/metric/metric.py -> build/lib/pyrepseq/metric
2024-09-18T12:56:40,491   creating build/lib/pyrepseq/metric/tcr_metric
2024-09-18T12:56:40,492   copying pyrepseq/metric/tcr_metric/__init__.py -> build/lib/pyrepseq/metric/tcr_metric
2024-09-18T12:56:40,494   copying pyrepseq/metric/tcr_metric/tcr_metric.py -> build/lib/pyrepseq/metric/tcr_metric
2024-09-18T12:56:40,495   copying pyrepseq/metric/tcr_metric/tcr_levenshtein.py -> build/lib/pyrepseq/metric/tcr_metric
2024-09-18T12:56:40,498   creating build/lib/pyrepseq/metric/tcr_metric/tcrdist
2024-09-18T12:56:40,499   copying pyrepseq/metric/tcr_metric/tcrdist/tcrdist_metric.py -> build/lib/pyrepseq/metric/tcr_metric/tcrdist
2024-09-18T12:56:40,501   copying pyrepseq/metric/tcr_metric/tcrdist/__init__.py -> build/lib/pyrepseq/metric/tcr_metric/tcrdist
2024-09-18T12:56:40,503   copying pyrepseq/metric/tcr_metric/tcrdist/simplified_tcrdist_interface.py -> build/lib/pyrepseq/metric/tcr_metric/tcrdist
2024-09-18T12:56:40,504   running egg_info
2024-09-18T12:56:40,531   writing pyrepseq.egg-info/PKG-INFO
2024-09-18T12:56:40,536   writing dependency_links to pyrepseq.egg-info/dependency_links.txt
2024-09-18T12:56:40,538   writing requirements to pyrepseq.egg-info/requires.txt
2024-09-18T12:56:40,539   writing top-level names to pyrepseq.egg-info/top_level.txt
2024-09-18T12:56:40,573   reading manifest file 'pyrepseq.egg-info/SOURCES.txt'
2024-09-18T12:56:40,577   adding license file 'LICENSE'
2024-09-18T12:56:40,579   writing manifest file 'pyrepseq.egg-info/SOURCES.txt'
2024-09-18T12:56:40,582   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pyrepseq.data' is absent from the `packages` configuration.
2024-09-18T12:56:40,582   !!

2024-09-18T12:56:40,583           ********************************************************************************
2024-09-18T12:56:40,584           ############################
2024-09-18T12:56:40,584           # Package would be ignored #
2024-09-18T12:56:40,585           ############################
2024-09-18T12:56:40,585           Python recognizes 'pyrepseq.data' as an importable package[^1],
2024-09-18T12:56:40,586           but it is absent from setuptools' `packages` configuration.

2024-09-18T12:56:40,587           This leads to an ambiguous overall configuration. If you want to distribute this
2024-09-18T12:56:40,587           package, please make sure that 'pyrepseq.data' is explicitly added
2024-09-18T12:56:40,588           to the `packages` configuration field.

2024-09-18T12:56:40,589           Alternatively, you can also rely on setuptools' discovery methods
2024-09-18T12:56:40,589           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-09-18T12:56:40,590           instead of `find_packages(...)`/`find:`).

2024-09-18T12:56:40,591           You can read more about "package discovery" on setuptools documentation page:

2024-09-18T12:56:40,592           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-09-18T12:56:40,593           If you don't want 'pyrepseq.data' to be distributed and are
2024-09-18T12:56:40,594           already explicitly excluding 'pyrepseq.data' via
2024-09-18T12:56:40,594           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-09-18T12:56:40,594           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-09-18T12:56:40,595           combination with a more fine grained `package-data` configuration.

2024-09-18T12:56:40,597           You can read more about "package data files" on setuptools documentation page:

2024-09-18T12:56:40,598           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-09-18T12:56:40,600           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-09-18T12:56:40,601                 even if it does not contain any `.py` files.
2024-09-18T12:56:40,602                 On the other hand, currently there is no concept of package data
2024-09-18T12:56:40,603                 directory, all directories are treated like packages.
2024-09-18T12:56:40,604           ********************************************************************************

2024-09-18T12:56:40,606   !!
2024-09-18T12:56:40,607     check.warn(importable)
2024-09-18T12:56:40,608   creating build/lib/pyrepseq/data
2024-09-18T12:56:40,608   copying pyrepseq/data/pcdelta_pbmc_minervina.csv -> build/lib/pyrepseq/data
2024-09-18T12:56:40,609   copying pyrepseq/data/vdists_alpha.csv -> build/lib/pyrepseq/data
2024-09-18T12:56:40,610   copying pyrepseq/data/vdists_beta.csv -> build/lib/pyrepseq/data
2024-09-18T12:56:40,631   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-09-18T12:56:40,632   !!

2024-09-18T12:56:40,633           ********************************************************************************
2024-09-18T12:56:40,633           Please avoid running ``setup.py`` directly.
2024-09-18T12:56:40,634           Instead, use pypa/build, pypa/installer or other
2024-09-18T12:56:40,634           standards-based tools.

2024-09-18T12:56:40,635           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-09-18T12:56:40,636           ********************************************************************************

2024-09-18T12:56:40,637   !!
2024-09-18T12:56:40,637     self.initialize_options()
2024-09-18T12:56:40,661   installing to build/bdist.linux-armv7l/wheel
2024-09-18T12:56:40,662   running install
2024-09-18T12:56:40,687   running install_lib
2024-09-18T12:56:40,714   creating build/bdist.linux-armv7l
2024-09-18T12:56:40,715   creating build/bdist.linux-armv7l/wheel
2024-09-18T12:56:40,717   creating build/bdist.linux-armv7l/wheel/pyrepseq
2024-09-18T12:56:40,718   copying build/lib/pyrepseq/util.py -> build/bdist.linux-armv7l/wheel/./pyrepseq
2024-09-18T12:56:40,721   copying build/lib/pyrepseq/stats.py -> build/bdist.linux-armv7l/wheel/./pyrepseq
2024-09-18T12:56:40,723   copying build/lib/pyrepseq/nn.py -> build/bdist.linux-armv7l/wheel/./pyrepseq
2024-09-18T12:56:40,726   copying build/lib/pyrepseq/io.py -> build/bdist.linux-armv7l/wheel/./pyrepseq
2024-09-18T12:56:40,729   copying build/lib/pyrepseq/__init__.py -> build/bdist.linux-armv7l/wheel/./pyrepseq
2024-09-18T12:56:40,731   copying build/lib/pyrepseq/entropy.py -> build/bdist.linux-armv7l/wheel/./pyrepseq
2024-09-18T12:56:40,734   copying build/lib/pyrepseq/plotting.py -> build/bdist.linux-armv7l/wheel/./pyrepseq
2024-09-18T12:56:40,737   creating build/bdist.linux-armv7l/wheel/pyrepseq/metric
2024-09-18T12:56:40,739   copying build/lib/pyrepseq/metric/__init__.py -> build/bdist.linux-armv7l/wheel/./pyrepseq/metric
2024-09-18T12:56:40,741   copying build/lib/pyrepseq/metric/levenshtein.py -> build/bdist.linux-armv7l/wheel/./pyrepseq/metric
2024-09-18T12:56:40,743   copying build/lib/pyrepseq/metric/metric.py -> build/bdist.linux-armv7l/wheel/./pyrepseq/metric
2024-09-18T12:56:40,746   creating build/bdist.linux-armv7l/wheel/pyrepseq/metric/tcr_metric
2024-09-18T12:56:40,747   copying build/lib/pyrepseq/metric/tcr_metric/__init__.py -> build/bdist.linux-armv7l/wheel/./pyrepseq/metric/tcr_metric
2024-09-18T12:56:40,749   copying build/lib/pyrepseq/metric/tcr_metric/tcr_metric.py -> build/bdist.linux-armv7l/wheel/./pyrepseq/metric/tcr_metric
2024-09-18T12:56:40,752   creating build/bdist.linux-armv7l/wheel/pyrepseq/metric/tcr_metric/tcrdist
2024-09-18T12:56:40,753   copying build/lib/pyrepseq/metric/tcr_metric/tcrdist/tcrdist_metric.py -> build/bdist.linux-armv7l/wheel/./pyrepseq/metric/tcr_metric/tcrdist
2024-09-18T12:56:40,756   copying build/lib/pyrepseq/metric/tcr_metric/tcrdist/__init__.py -> build/bdist.linux-armv7l/wheel/./pyrepseq/metric/tcr_metric/tcrdist
2024-09-18T12:56:40,758   copying build/lib/pyrepseq/metric/tcr_metric/tcrdist/simplified_tcrdist_interface.py -> build/bdist.linux-armv7l/wheel/./pyrepseq/metric/tcr_metric/tcrdist
2024-09-18T12:56:40,760   copying build/lib/pyrepseq/metric/tcr_metric/tcr_levenshtein.py -> build/bdist.linux-armv7l/wheel/./pyrepseq/metric/tcr_metric
2024-09-18T12:56:40,763   copying build/lib/pyrepseq/distance.py -> build/bdist.linux-armv7l/wheel/./pyrepseq
2024-09-18T12:56:40,766   creating build/bdist.linux-armv7l/wheel/pyrepseq/data
2024-09-18T12:56:40,767   copying build/lib/pyrepseq/data/pcdelta_pbmc_minervina.csv -> build/bdist.linux-armv7l/wheel/./pyrepseq/data
2024-09-18T12:56:40,770   copying build/lib/pyrepseq/data/vdists_alpha.csv -> build/bdist.linux-armv7l/wheel/./pyrepseq/data
2024-09-18T12:56:40,773   copying build/lib/pyrepseq/data/vdists_beta.csv -> build/bdist.linux-armv7l/wheel/./pyrepseq/data
2024-09-18T12:56:40,776   copying build/lib/pyrepseq/version.py -> build/bdist.linux-armv7l/wheel/./pyrepseq
2024-09-18T12:56:40,778   copying build/lib/pyrepseq/clustering.py -> build/bdist.linux-armv7l/wheel/./pyrepseq
2024-09-18T12:56:40,780   running install_egg_info
2024-09-18T12:56:40,813   Copying pyrepseq.egg-info to build/bdist.linux-armv7l/wheel/./pyrepseq-1.5.1-py3.11.egg-info
2024-09-18T12:56:40,823   running install_scripts
2024-09-18T12:56:40,841   creating build/bdist.linux-armv7l/wheel/pyrepseq-1.5.1.dist-info/WHEEL
2024-09-18T12:56:40,844   creating '/tmp/pip-wheel-mikj98nl/pyrepseq-1.5.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-09-18T12:56:40,847   adding 'pyrepseq/__init__.py'
2024-09-18T12:56:40,848   adding 'pyrepseq/clustering.py'
2024-09-18T12:56:40,851   adding 'pyrepseq/distance.py'
2024-09-18T12:56:40,853   adding 'pyrepseq/entropy.py'
2024-09-18T12:56:40,856   adding 'pyrepseq/io.py'
2024-09-18T12:56:40,859   adding 'pyrepseq/nn.py'
2024-09-18T12:56:40,862   adding 'pyrepseq/plotting.py'
2024-09-18T12:56:40,865   adding 'pyrepseq/stats.py'
2024-09-18T12:56:40,867   adding 'pyrepseq/util.py'
2024-09-18T12:56:40,869   adding 'pyrepseq/version.py'
2024-09-18T12:56:40,871   adding 'pyrepseq/data/pcdelta_pbmc_minervina.csv'
2024-09-18T12:56:40,876   adding 'pyrepseq/data/vdists_alpha.csv'
2024-09-18T12:56:40,886   adding 'pyrepseq/data/vdists_beta.csv'
2024-09-18T12:56:40,888   adding 'pyrepseq/metric/__init__.py'
2024-09-18T12:56:40,890   adding 'pyrepseq/metric/levenshtein.py'
2024-09-18T12:56:40,892   adding 'pyrepseq/metric/metric.py'
2024-09-18T12:56:40,894   adding 'pyrepseq/metric/tcr_metric/__init__.py'
2024-09-18T12:56:40,896   adding 'pyrepseq/metric/tcr_metric/tcr_levenshtein.py'
2024-09-18T12:56:40,898   adding 'pyrepseq/metric/tcr_metric/tcr_metric.py'
2024-09-18T12:56:40,900   adding 'pyrepseq/metric/tcr_metric/tcrdist/__init__.py'
2024-09-18T12:56:40,901   adding 'pyrepseq/metric/tcr_metric/tcrdist/simplified_tcrdist_interface.py'
2024-09-18T12:56:40,903   adding 'pyrepseq/metric/tcr_metric/tcrdist/tcrdist_metric.py'
2024-09-18T12:56:40,906   adding 'pyrepseq-1.5.1.dist-info/LICENSE'
2024-09-18T12:56:40,907   adding 'pyrepseq-1.5.1.dist-info/METADATA'
2024-09-18T12:56:40,909   adding 'pyrepseq-1.5.1.dist-info/WHEEL'
2024-09-18T12:56:40,910   adding 'pyrepseq-1.5.1.dist-info/top_level.txt'
2024-09-18T12:56:40,911   adding 'pyrepseq-1.5.1.dist-info/RECORD'
2024-09-18T12:56:40,914   removing build/bdist.linux-armv7l/wheel
2024-09-18T12:56:41,039   Building wheel for pyrepseq (setup.py): finished with status 'done'
2024-09-18T12:56:41,042   Created wheel for pyrepseq: filename=pyrepseq-1.5.1-py3-none-any.whl size=54356 sha256=fc52b97fb2e60b35494ff02ad6120ffdf2b112b5fa1851fc4eef8a6c425c8c3f
2024-09-18T12:56:41,044   Stored in directory: /tmp/pip-ephem-wheel-cache-pk30muwy/wheels/58/6d/f6/9f044e6458453a8ba347cc4cf4bd247ebb721bb01089bab37b
2024-09-18T12:56:41,055 Successfully built pyrepseq
2024-09-18T12:56:41,060 Removed build tracker: '/tmp/pip-build-tracker-5z0xba4b'