2024-09-19T20:50:52,770 Disabling truststore because Python version isn't 3.10+ 2024-09-19T20:50:53,236 Created temporary directory: /tmp/pip-build-tracker-rcexvouz 2024-09-19T20:50:53,236 Initialized build tracking at /tmp/pip-build-tracker-rcexvouz 2024-09-19T20:50:53,237 Created build tracker: /tmp/pip-build-tracker-rcexvouz 2024-09-19T20:50:53,237 Entered build tracker: /tmp/pip-build-tracker-rcexvouz 2024-09-19T20:50:53,237 Created temporary directory: /tmp/pip-wheel-ef27pb9h 2024-09-19T20:50:53,243 Created temporary directory: /tmp/pip-ephem-wheel-cache-lnfe3ier 2024-09-19T20:50:53,286 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-09-19T20:50:53,289 2 location(s) to search for versions of gillespy2: 2024-09-19T20:50:53,289 * https://pypi.org/simple/gillespy2/ 2024-09-19T20:50:53,289 * https://www.piwheels.org/simple/gillespy2/ 2024-09-19T20:50:53,289 Fetching project page and analyzing links: https://pypi.org/simple/gillespy2/ 2024-09-19T20:50:53,290 Getting page https://pypi.org/simple/gillespy2/ 2024-09-19T20:50:53,291 Found index url https://pypi.org/simple/ 2024-09-19T20:50:53,312 Fetched page https://pypi.org/simple/gillespy2/ as application/vnd.pypi.simple.v1+json 2024-09-19T20:50:53,329 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/4f/7c/cf969b647190a481b0fe6d4dec8038b50aac1dca54d60568183169fd0dfc/gillespy2-1.0.1-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2024-09-19T20:50:53,329 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/14/d2/153f864b374c1ba9a75365a8b12cab0d5cf1c9abb205d1671dc236dc35c2/gillespy2-1.0.2-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2024-09-19T20:50:53,329 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/30/b2/20ac91683f66e836f1f70aeb87a4806edb0be18a6c7b6c879769013e1836/gillespy2-1.0.3-py3-none-any.whl (from 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https://files.pythonhosted.org/packages/26/82/4b147f4237352951887eac51b814d71427fc16b30a2c8e8ee6ff066b88ee/gillespy2-1.4.1-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2024-09-19T20:50:53,336 Found link https://files.pythonhosted.org/packages/94/5a/26d5c6177400b0f5a1d8e06ab2e5878923badab8dda4400159c5977f8a66/gillespy2-1.4.1.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.4.1 2024-09-19T20:50:53,336 Skipping link: No binaries permitted for gillespy2: https://files.pythonhosted.org/packages/52/2b/6af2475c557bed34d45c14217e7ef04d6b3cb20aa992e31e32b9d301000c/gillespy2-1.4.2-py3-none-any.whl (from https://pypi.org/simple/gillespy2/) 2024-09-19T20:50:53,337 Found link https://files.pythonhosted.org/packages/88/9e/8789afcd068a20867f789af5bc0c78b75417c5f7fbf09f3c6c26b4caf71e/gillespy2-1.4.2.tar.gz (from https://pypi.org/simple/gillespy2/), version: 1.4.2 2024-09-19T20:50:53,337 Skipping link: No binaries permitted for gillespy2: 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https://www.piwheels.org/simple/gillespy2/) 2024-09-19T20:50:53,408 Skipping link: No binaries permitted for gillespy2: https://www.piwheels.org/simple/gillespy2/gillespy2-1.2.1-py3-none-any.whl#sha256=8d9f72d4df55eb45594255eee02d31c6a68d52c5ca8c558547beebdda39ef15f (from https://www.piwheels.org/simple/gillespy2/) 2024-09-19T20:50:53,408 Skipping link: No binaries permitted for gillespy2: https://www.piwheels.org/simple/gillespy2/gillespy2-1.2-py3-none-any.whl#sha256=c073782d0ea9c774b994bee32321a4ba7d301f241645da5451db98e631bd6c76 (from https://www.piwheels.org/simple/gillespy2/) 2024-09-19T20:50:53,408 Skipping link: No binaries permitted for gillespy2: https://www.piwheels.org/simple/gillespy2/gillespy2-1.1.2-py3-none-any.whl#sha256=e45f9ed6127abdabf3c2bfe84be74d596418aaff60864bdd69adb1185b169ff1 (from https://www.piwheels.org/simple/gillespy2/) 2024-09-19T20:50:53,408 Skipping link: No binaries permitted for gillespy2: https://www.piwheels.org/simple/gillespy2/gillespy2-1.1.1-py3-none-any.whl#sha256=5099c3463c652f1c08e76db9ef752928ca3ed8411130053116c73ee73414feed (from https://www.piwheels.org/simple/gillespy2/) 2024-09-19T20:50:53,409 Skipping link: No binaries permitted for gillespy2: https://www.piwheels.org/simple/gillespy2/gillespy2-1.1.0-py3-none-any.whl#sha256=9dbc5bd93d132cf612a3c19b177f55f8d42520693a2d65c1e3181f5dafd8f4e4 (from https://www.piwheels.org/simple/gillespy2/) 2024-09-19T20:50:53,409 Skipping link: not a file: https://www.piwheels.org/simple/gillespy2/ 2024-09-19T20:50:53,409 Skipping link: not a file: https://pypi.org/simple/gillespy2/ 2024-09-19T20:50:53,430 Given no hashes to check 1 links for project 'gillespy2': discarding no candidates 2024-09-19T20:50:53,432 Collecting gillespy2==1.8.3 2024-09-19T20:50:53,434 Created temporary directory: /tmp/pip-unpack-z8h2au95 2024-09-19T20:50:53,530 Downloading gillespy2-1.8.3.tar.gz (313 kB) 2024-09-19T20:50:53,999 Added gillespy2==1.8.3 from https://files.pythonhosted.org/packages/02/b0/c13e3c4f2f66412b4603234e9c2dfd6bec68926c89b40d8339479cdbcd11/gillespy2-1.8.3.tar.gz to build tracker '/tmp/pip-build-tracker-rcexvouz' 2024-09-19T20:50:54,002 Running setup.py (path:/tmp/pip-wheel-ef27pb9h/gillespy2_94f23675e28c47a2b0476596099300e6/setup.py) egg_info for package gillespy2 2024-09-19T20:50:54,003 Created temporary directory: /tmp/pip-pip-egg-info-btbnejh3 2024-09-19T20:50:54,003 Preparing metadata (setup.py): started 2024-09-19T20:50:54,004 Running command python setup.py egg_info 2024-09-19T20:50:54,784 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-09-19T20:50:54,785 !! 2024-09-19T20:50:54,785 ******************************************************************************** 2024-09-19T20:50:54,785 Usage of dash-separated 'description-file' will not be supported in future 2024-09-19T20:50:54,785 versions. Please use the underscore name 'description_file' instead. 2024-09-19T20:50:54,785 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-09-19T20:50:54,785 or your builds will no longer be supported. 2024-09-19T20:50:54,786 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-09-19T20:50:54,786 ******************************************************************************** 2024-09-19T20:50:54,786 !! 2024-09-19T20:50:54,786 opt = self.warn_dash_deprecation(opt, section) 2024-09-19T20:50:54,820 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:268: UserWarning: Unknown distribution option: 'extras_requires' 2024-09-19T20:50:54,821 warnings.warn(msg) 2024-09-19T20:50:55,168 running egg_info 2024-09-19T20:50:55,170 creating /tmp/pip-pip-egg-info-btbnejh3/gillespy2.egg-info 2024-09-19T20:50:55,197 writing /tmp/pip-pip-egg-info-btbnejh3/gillespy2.egg-info/PKG-INFO 2024-09-19T20:50:55,201 writing dependency_links to /tmp/pip-pip-egg-info-btbnejh3/gillespy2.egg-info/dependency_links.txt 2024-09-19T20:50:55,203 writing requirements to /tmp/pip-pip-egg-info-btbnejh3/gillespy2.egg-info/requires.txt 2024-09-19T20:50:55,205 writing top-level names to /tmp/pip-pip-egg-info-btbnejh3/gillespy2.egg-info/top_level.txt 2024-09-19T20:50:55,206 writing manifest file '/tmp/pip-pip-egg-info-btbnejh3/gillespy2.egg-info/SOURCES.txt' 2024-09-19T20:50:55,302 reading manifest file '/tmp/pip-pip-egg-info-btbnejh3/gillespy2.egg-info/SOURCES.txt' 2024-09-19T20:50:55,304 reading manifest template 'MANIFEST.in' 2024-09-19T20:50:55,344 adding license file 'LICENSE' 2024-09-19T20:50:55,352 writing manifest file '/tmp/pip-pip-egg-info-btbnejh3/gillespy2.egg-info/SOURCES.txt' 2024-09-19T20:50:55,449 Preparing metadata (setup.py): finished with status 'done' 2024-09-19T20:50:55,456 Source in /tmp/pip-wheel-ef27pb9h/gillespy2_94f23675e28c47a2b0476596099300e6 has version 1.8.3, which satisfies requirement gillespy2==1.8.3 from https://files.pythonhosted.org/packages/02/b0/c13e3c4f2f66412b4603234e9c2dfd6bec68926c89b40d8339479cdbcd11/gillespy2-1.8.3.tar.gz 2024-09-19T20:50:55,457 Removed gillespy2==1.8.3 from https://files.pythonhosted.org/packages/02/b0/c13e3c4f2f66412b4603234e9c2dfd6bec68926c89b40d8339479cdbcd11/gillespy2-1.8.3.tar.gz from build tracker '/tmp/pip-build-tracker-rcexvouz' 2024-09-19T20:50:55,465 Created temporary directory: /tmp/pip-unpack-oe95c9zc 2024-09-19T20:50:55,466 Created temporary directory: /tmp/pip-unpack-hh518ynq 2024-09-19T20:50:55,466 Building wheels for collected packages: gillespy2 2024-09-19T20:50:55,470 Created temporary directory: /tmp/pip-wheel-qbd13_36 2024-09-19T20:50:55,471 Building wheel for gillespy2 (setup.py): started 2024-09-19T20:50:55,472 Destination directory: /tmp/pip-wheel-qbd13_36 2024-09-19T20:50:55,472 Running command python setup.py bdist_wheel 2024-09-19T20:50:56,212 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:447: SetuptoolsDeprecationWarning: Invalid dash-separated options 2024-09-19T20:50:56,213 !! 2024-09-19T20:50:56,213 ******************************************************************************** 2024-09-19T20:50:56,213 Usage of dash-separated 'description-file' will not be supported in future 2024-09-19T20:50:56,213 versions. Please use the underscore name 'description_file' instead. 2024-09-19T20:50:56,214 By 2024-Sep-26, you need to update your project and remove deprecated calls 2024-09-19T20:50:56,214 or your builds will no longer be supported. 2024-09-19T20:50:56,214 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2024-09-19T20:50:56,214 ******************************************************************************** 2024-09-19T20:50:56,214 !! 2024-09-19T20:50:56,214 opt = self.warn_dash_deprecation(opt, section) 2024-09-19T20:50:56,249 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:268: UserWarning: Unknown distribution option: 'extras_requires' 2024-09-19T20:50:56,249 warnings.warn(msg) 2024-09-19T20:50:56,568 running bdist_wheel 2024-09-19T20:50:56,696 running build 2024-09-19T20:50:56,697 running build_py 2024-09-19T20:50:56,726 creating build 2024-09-19T20:50:56,726 creating build/lib 2024-09-19T20:50:56,727 creating build/lib/gillespy2 2024-09-19T20:50:56,728 copying gillespy2/__init__.py -> build/lib/gillespy2 2024-09-19T20:50:56,729 copying gillespy2/__version__.py -> build/lib/gillespy2 2024-09-19T20:50:56,731 creating build/lib/gillespy2/stochss 2024-09-19T20:50:56,732 copying gillespy2/stochss/__init__.py -> build/lib/gillespy2/stochss 2024-09-19T20:50:56,734 copying gillespy2/stochss/StochSSexport.py -> build/lib/gillespy2/stochss 2024-09-19T20:50:56,737 creating build/lib/gillespy2/core 2024-09-19T20:50:56,738 copying gillespy2/core/liveGraphing.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,740 copying gillespy2/core/assignmentrule.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,742 copying gillespy2/core/__init__.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,743 copying gillespy2/core/cleanup.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,745 copying gillespy2/core/timespan.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,746 copying gillespy2/core/functiondefinition.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,748 copying gillespy2/core/gillespySolver.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,750 copying gillespy2/core/gillespyError.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,752 copying gillespy2/core/sortableobject.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,753 copying gillespy2/core/model.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,757 copying gillespy2/core/raterule.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,758 copying gillespy2/core/parameter.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,760 copying gillespy2/core/species.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,762 copying gillespy2/core/results.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,765 copying gillespy2/core/reaction.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,768 copying gillespy2/core/events.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,770 copying gillespy2/core/jsonify.py -> build/lib/gillespy2/core 2024-09-19T20:50:56,773 creating build/lib/gillespy2/sbml 2024-09-19T20:50:56,774 copying gillespy2/sbml/__init__.py -> build/lib/gillespy2/sbml 2024-09-19T20:50:56,775 copying gillespy2/sbml/SBMLexport.py -> build/lib/gillespy2/sbml 2024-09-19T20:50:56,777 copying gillespy2/sbml/SBMLimport.py -> build/lib/gillespy2/sbml 2024-09-19T20:50:56,780 creating build/lib/gillespy2/solvers 2024-09-19T20:50:56,781 copying gillespy2/solvers/__init__.py -> build/lib/gillespy2/solvers 2024-09-19T20:50:56,783 creating build/lib/gillespy2/solvers/utilities 2024-09-19T20:50:56,784 copying gillespy2/solvers/utilities/solverutils.py -> build/lib/gillespy2/solvers/utilities 2024-09-19T20:50:56,786 copying gillespy2/solvers/utilities/__init__.py -> build/lib/gillespy2/solvers/utilities 2024-09-19T20:50:56,788 copying gillespy2/solvers/utilities/cpp_support_test.py -> build/lib/gillespy2/solvers/utilities 2024-09-19T20:50:56,790 copying gillespy2/solvers/utilities/Tau.py -> build/lib/gillespy2/solvers/utilities 2024-09-19T20:50:56,792 creating build/lib/gillespy2/solvers/numpy 2024-09-19T20:50:56,793 copying gillespy2/solvers/numpy/__init__.py -> build/lib/gillespy2/solvers/numpy 2024-09-19T20:50:56,795 copying gillespy2/solvers/numpy/tau_leaping_solver.py -> build/lib/gillespy2/solvers/numpy 2024-09-19T20:50:56,797 copying gillespy2/solvers/numpy/CLE_solver.py -> build/lib/gillespy2/solvers/numpy 2024-09-19T20:50:56,800 copying gillespy2/solvers/numpy/ode_solver.py -> build/lib/gillespy2/solvers/numpy 2024-09-19T20:50:56,802 copying gillespy2/solvers/numpy/ssa_solver.py -> build/lib/gillespy2/solvers/numpy 2024-09-19T20:50:56,805 copying gillespy2/solvers/numpy/tau_hybrid_solver.py -> build/lib/gillespy2/solvers/numpy 2024-09-19T20:50:56,809 creating build/lib/gillespy2/solvers/cpp 2024-09-19T20:50:56,810 copying gillespy2/solvers/cpp/ode_c_solver.py -> build/lib/gillespy2/solvers/cpp 2024-09-19T20:50:56,812 copying gillespy2/solvers/cpp/__init__.py -> build/lib/gillespy2/solvers/cpp 2024-09-19T20:50:56,813 copying gillespy2/solvers/cpp/ssa_c_solver.py -> build/lib/gillespy2/solvers/cpp 2024-09-19T20:50:56,815 copying gillespy2/solvers/cpp/tau_hybrid_c_solver.py -> build/lib/gillespy2/solvers/cpp 2024-09-19T20:50:56,818 copying gillespy2/solvers/cpp/tau_leaping_c_solver.py -> build/lib/gillespy2/solvers/cpp 2024-09-19T20:50:56,820 copying gillespy2/solvers/cpp/c_solver.py -> build/lib/gillespy2/solvers/cpp 2024-09-19T20:50:56,822 copying gillespy2/solvers/cpp/c_decoder.py -> build/lib/gillespy2/solvers/cpp 2024-09-19T20:50:56,826 creating build/lib/gillespy2/solvers/cpp/build 2024-09-19T20:50:56,826 copying gillespy2/solvers/cpp/build/make.py -> build/lib/gillespy2/solvers/cpp/build 2024-09-19T20:50:56,829 copying gillespy2/solvers/cpp/build/__init__.py -> build/lib/gillespy2/solvers/cpp/build 2024-09-19T20:50:56,830 copying gillespy2/solvers/cpp/build/template_gen.py -> build/lib/gillespy2/solvers/cpp/build 2024-09-19T20:50:56,833 copying gillespy2/solvers/cpp/build/build_engine.py -> build/lib/gillespy2/solvers/cpp/build 2024-09-19T20:50:56,835 copying gillespy2/solvers/cpp/build/expression.py -> build/lib/gillespy2/solvers/cpp/build 2024-09-19T20:50:56,837 running egg_info 2024-09-19T20:50:56,864 writing gillespy2.egg-info/PKG-INFO 2024-09-19T20:50:56,868 writing dependency_links to gillespy2.egg-info/dependency_links.txt 2024-09-19T20:50:56,870 writing requirements to gillespy2.egg-info/requires.txt 2024-09-19T20:50:56,871 writing top-level names to gillespy2.egg-info/top_level.txt 2024-09-19T20:50:56,912 reading manifest file 'gillespy2.egg-info/SOURCES.txt' 2024-09-19T20:50:56,924 reading manifest template 'MANIFEST.in' 2024-09-19T20:50:56,963 adding license file 'LICENSE' 2024-09-19T20:50:56,973 writing manifest file 'gillespy2.egg-info/SOURCES.txt' 2024-09-19T20:50:56,977 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gillespy2.solvers.cpp.c_base' is absent from the `packages` configuration. 2024-09-19T20:50:56,977 !! 2024-09-19T20:50:56,977 ******************************************************************************** 2024-09-19T20:50:56,977 ############################ 2024-09-19T20:50:56,977 # Package would be ignored # 2024-09-19T20:50:56,978 ############################ 2024-09-19T20:50:56,978 Python recognizes 'gillespy2.solvers.cpp.c_base' as an importable package[^1], 2024-09-19T20:50:56,978 but it is absent from setuptools' `packages` configuration. 2024-09-19T20:50:56,978 This leads to an ambiguous overall configuration. If you want to distribute this 2024-09-19T20:50:56,978 package, please make sure that 'gillespy2.solvers.cpp.c_base' is explicitly added 2024-09-19T20:50:56,978 to the `packages` configuration field. 2024-09-19T20:50:56,979 Alternatively, you can also rely on setuptools' discovery methods 2024-09-19T20:50:56,979 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-09-19T20:50:56,979 instead of `find_packages(...)`/`find:`). 2024-09-19T20:50:56,979 You can read more about "package discovery" on setuptools documentation page: 2024-09-19T20:50:56,979 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-09-19T20:50:56,979 If you don't want 'gillespy2.solvers.cpp.c_base' to be distributed and are 2024-09-19T20:50:56,980 already explicitly excluding 'gillespy2.solvers.cpp.c_base' via 2024-09-19T20:50:56,980 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-09-19T20:50:56,980 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-09-19T20:50:56,980 combination with a more fine grained `package-data` configuration. 2024-09-19T20:50:56,980 You can read more about "package data files" on setuptools documentation page: 2024-09-19T20:50:56,980 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-09-19T20:50:56,981 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-09-19T20:50:56,981 even if it does not contain any `.py` files. 2024-09-19T20:50:56,981 On the other hand, currently there is no concept of package data 2024-09-19T20:50:56,981 directory, all directories are treated like packages. 2024-09-19T20:50:56,981 ******************************************************************************** 2024-09-19T20:50:56,981 !! 2024-09-19T20:50:56,982 check.warn(importable) 2024-09-19T20:50:56,982 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gillespy2.solvers.cpp.c_base.Sundials' is absent from the `packages` configuration. 2024-09-19T20:50:56,982 !! 2024-09-19T20:50:56,982 ******************************************************************************** 2024-09-19T20:50:56,982 ############################ 2024-09-19T20:50:56,982 # Package would be ignored # 2024-09-19T20:50:56,982 ############################ 2024-09-19T20:50:56,983 Python recognizes 'gillespy2.solvers.cpp.c_base.Sundials' as an importable package[^1], 2024-09-19T20:50:56,983 but it is absent from setuptools' `packages` configuration. 2024-09-19T20:50:56,983 This leads to an ambiguous overall configuration. If you want to distribute this 2024-09-19T20:50:56,983 package, please make sure that 'gillespy2.solvers.cpp.c_base.Sundials' is explicitly added 2024-09-19T20:50:56,983 to the `packages` configuration field. 2024-09-19T20:50:56,983 Alternatively, you can also rely on setuptools' discovery methods 2024-09-19T20:50:56,983 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-09-19T20:50:56,984 instead of `find_packages(...)`/`find:`). 2024-09-19T20:50:56,984 You can read more about "package discovery" on setuptools documentation page: 2024-09-19T20:50:56,984 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-09-19T20:50:56,984 If you don't want 'gillespy2.solvers.cpp.c_base.Sundials' to be distributed and are 2024-09-19T20:50:56,984 already explicitly excluding 'gillespy2.solvers.cpp.c_base.Sundials' via 2024-09-19T20:50:56,984 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-09-19T20:50:56,985 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-09-19T20:50:56,985 combination with a more fine grained `package-data` configuration. 2024-09-19T20:50:56,985 You can read more about "package data files" on setuptools documentation page: 2024-09-19T20:50:56,985 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-09-19T20:50:56,985 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-09-19T20:50:56,986 even if it does not contain any `.py` files. 2024-09-19T20:50:56,986 On the other hand, currently there is no concept of package data 2024-09-19T20:50:56,986 directory, all directories are treated like packages. 2024-09-19T20:50:56,986 ******************************************************************************** 2024-09-19T20:50:56,986 !! 2024-09-19T20:50:56,986 check.warn(importable) 2024-09-19T20:50:56,986 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gillespy2.solvers.cpp.c_base.Sundials.include' is absent from the `packages` configuration. 2024-09-19T20:50:56,986 !! 2024-09-19T20:50:56,987 ******************************************************************************** 2024-09-19T20:50:56,987 ############################ 2024-09-19T20:50:56,987 # Package would be ignored # 2024-09-19T20:50:56,987 ############################ 2024-09-19T20:50:56,987 Python recognizes 'gillespy2.solvers.cpp.c_base.Sundials.include' as an importable package[^1], 2024-09-19T20:50:56,987 but it is absent from setuptools' `packages` configuration. 2024-09-19T20:50:56,987 This leads to an ambiguous overall configuration. If you want to distribute this 2024-09-19T20:50:56,988 package, please make sure that 'gillespy2.solvers.cpp.c_base.Sundials.include' is explicitly added 2024-09-19T20:50:56,988 to the `packages` configuration field. 2024-09-19T20:50:56,988 Alternatively, you can also rely on setuptools' discovery methods 2024-09-19T20:50:56,988 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-09-19T20:50:56,988 instead of `find_packages(...)`/`find:`). 2024-09-19T20:50:56,988 You can read more about "package discovery" on setuptools documentation page: 2024-09-19T20:50:56,989 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-09-19T20:50:56,989 If you don't want 'gillespy2.solvers.cpp.c_base.Sundials.include' to be distributed and are 2024-09-19T20:50:56,989 already explicitly excluding 'gillespy2.solvers.cpp.c_base.Sundials.include' via 2024-09-19T20:50:56,989 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-09-19T20:50:56,989 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-09-19T20:50:56,989 combination with a more fine grained `package-data` configuration. 2024-09-19T20:50:56,990 You can read more about "package data files" on setuptools documentation page: 2024-09-19T20:50:56,990 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-09-19T20:50:56,990 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-09-19T20:50:56,990 even if it does not contain any `.py` files. 2024-09-19T20:50:56,990 On the other hand, currently there is no concept of package data 2024-09-19T20:50:56,991 directory, all directories are treated like packages. 2024-09-19T20:50:56,991 ******************************************************************************** 2024-09-19T20:50:56,991 !! 2024-09-19T20:50:56,991 check.warn(importable) 2024-09-19T20:50:56,991 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gillespy2.solvers.cpp.c_base.Sundials.src' is absent from the `packages` configuration. 2024-09-19T20:50:56,991 !! 2024-09-19T20:50:56,992 ******************************************************************************** 2024-09-19T20:50:56,992 ############################ 2024-09-19T20:50:56,992 # Package would be ignored # 2024-09-19T20:50:56,992 ############################ 2024-09-19T20:50:56,992 Python recognizes 'gillespy2.solvers.cpp.c_base.Sundials.src' as an importable package[^1], 2024-09-19T20:50:56,992 but it is absent from setuptools' `packages` configuration. 2024-09-19T20:50:56,992 This leads to an ambiguous overall configuration. If you want to distribute this 2024-09-19T20:50:56,993 package, please make sure that 'gillespy2.solvers.cpp.c_base.Sundials.src' is explicitly added 2024-09-19T20:50:56,993 to the `packages` configuration field. 2024-09-19T20:50:56,993 Alternatively, you can also rely on setuptools' discovery methods 2024-09-19T20:50:56,993 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-09-19T20:50:56,993 instead of `find_packages(...)`/`find:`). 2024-09-19T20:50:56,993 You can read more about "package discovery" on setuptools documentation page: 2024-09-19T20:50:56,994 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-09-19T20:50:56,994 If you don't want 'gillespy2.solvers.cpp.c_base.Sundials.src' to be distributed and are 2024-09-19T20:50:56,994 already explicitly excluding 'gillespy2.solvers.cpp.c_base.Sundials.src' via 2024-09-19T20:50:56,994 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-09-19T20:50:56,994 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-09-19T20:50:56,994 combination with a more fine grained `package-data` configuration. 2024-09-19T20:50:56,994 You can read more about "package data files" on setuptools documentation page: 2024-09-19T20:50:56,995 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-09-19T20:50:56,995 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-09-19T20:50:56,995 even if it does not contain any `.py` files. 2024-09-19T20:50:56,995 On the other hand, currently there is no concept of package data 2024-09-19T20:50:56,995 directory, all directories are treated like packages. 2024-09-19T20:50:56,995 ******************************************************************************** 2024-09-19T20:50:56,996 !! 2024-09-19T20:50:56,996 check.warn(importable) 2024-09-19T20:50:56,996 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gillespy2.solvers.cpp.c_base.Tau' is absent from the `packages` configuration. 2024-09-19T20:50:56,996 !! 2024-09-19T20:50:56,996 ******************************************************************************** 2024-09-19T20:50:56,996 ############################ 2024-09-19T20:50:56,996 # Package would be ignored # 2024-09-19T20:50:56,997 ############################ 2024-09-19T20:50:56,997 Python recognizes 'gillespy2.solvers.cpp.c_base.Tau' as an importable package[^1], 2024-09-19T20:50:56,997 but it is absent from setuptools' `packages` configuration. 2024-09-19T20:50:56,997 This leads to an ambiguous overall configuration. If you want to distribute this 2024-09-19T20:50:56,997 package, please make sure that 'gillespy2.solvers.cpp.c_base.Tau' is explicitly added 2024-09-19T20:50:56,997 to the `packages` configuration field. 2024-09-19T20:50:56,997 Alternatively, you can also rely on setuptools' discovery methods 2024-09-19T20:50:56,998 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-09-19T20:50:56,998 instead of `find_packages(...)`/`find:`). 2024-09-19T20:50:56,998 You can read more about "package discovery" on setuptools documentation page: 2024-09-19T20:50:56,998 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-09-19T20:50:56,998 If you don't want 'gillespy2.solvers.cpp.c_base.Tau' to be distributed and are 2024-09-19T20:50:56,998 already explicitly excluding 'gillespy2.solvers.cpp.c_base.Tau' via 2024-09-19T20:50:56,999 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-09-19T20:50:56,999 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-09-19T20:50:56,999 combination with a more fine grained `package-data` configuration. 2024-09-19T20:50:56,999 You can read more about "package data files" on setuptools documentation page: 2024-09-19T20:50:56,999 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-09-19T20:50:56,999 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-09-19T20:50:57,000 even if it does not contain any `.py` files. 2024-09-19T20:50:57,000 On the other hand, currently there is no concept of package data 2024-09-19T20:50:57,000 directory, all directories are treated like packages. 2024-09-19T20:50:57,000 ******************************************************************************** 2024-09-19T20:50:57,000 !! 2024-09-19T20:50:57,000 check.warn(importable) 2024-09-19T20:50:57,000 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gillespy2.solvers.cpp.c_base.ode_cpp_solver' is absent from the `packages` configuration. 2024-09-19T20:50:57,001 !! 2024-09-19T20:50:57,001 ******************************************************************************** 2024-09-19T20:50:57,001 ############################ 2024-09-19T20:50:57,001 # Package would be ignored # 2024-09-19T20:50:57,001 ############################ 2024-09-19T20:50:57,001 Python recognizes 'gillespy2.solvers.cpp.c_base.ode_cpp_solver' as an importable package[^1], 2024-09-19T20:50:57,002 but it is absent from setuptools' `packages` configuration. 2024-09-19T20:50:57,002 This leads to an ambiguous overall configuration. If you want to distribute this 2024-09-19T20:50:57,002 package, please make sure that 'gillespy2.solvers.cpp.c_base.ode_cpp_solver' is explicitly added 2024-09-19T20:50:57,002 to the `packages` configuration field. 2024-09-19T20:50:57,002 Alternatively, you can also rely on setuptools' discovery methods 2024-09-19T20:50:57,002 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-09-19T20:50:57,002 instead of `find_packages(...)`/`find:`). 2024-09-19T20:50:57,003 You can read more about "package discovery" on setuptools documentation page: 2024-09-19T20:50:57,003 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-09-19T20:50:57,003 If you don't want 'gillespy2.solvers.cpp.c_base.ode_cpp_solver' to be distributed and are 2024-09-19T20:50:57,003 already explicitly excluding 'gillespy2.solvers.cpp.c_base.ode_cpp_solver' via 2024-09-19T20:50:57,004 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-09-19T20:50:57,004 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-09-19T20:50:57,004 combination with a more fine grained `package-data` configuration. 2024-09-19T20:50:57,004 You can read more about "package data files" on setuptools documentation page: 2024-09-19T20:50:57,004 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-09-19T20:50:57,005 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-09-19T20:50:57,005 even if it does not contain any `.py` files. 2024-09-19T20:50:57,005 On the other hand, currently there is no concept of package data 2024-09-19T20:50:57,005 directory, all directories are treated like packages. 2024-09-19T20:50:57,005 ******************************************************************************** 2024-09-19T20:50:57,005 !! 2024-09-19T20:50:57,005 check.warn(importable) 2024-09-19T20:50:57,006 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gillespy2.solvers.cpp.c_base.ssa_cpp_solver' is absent from the `packages` configuration. 2024-09-19T20:50:57,006 !! 2024-09-19T20:50:57,006 ******************************************************************************** 2024-09-19T20:50:57,006 ############################ 2024-09-19T20:50:57,006 # Package would be ignored # 2024-09-19T20:50:57,006 ############################ 2024-09-19T20:50:57,006 Python recognizes 'gillespy2.solvers.cpp.c_base.ssa_cpp_solver' as an importable package[^1], 2024-09-19T20:50:57,007 but it is absent from setuptools' `packages` configuration. 2024-09-19T20:50:57,007 This leads to an ambiguous overall configuration. If you want to distribute this 2024-09-19T20:50:57,007 package, please make sure that 'gillespy2.solvers.cpp.c_base.ssa_cpp_solver' is explicitly added 2024-09-19T20:50:57,007 to the `packages` configuration field. 2024-09-19T20:50:57,007 Alternatively, you can also rely on setuptools' discovery methods 2024-09-19T20:50:57,007 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-09-19T20:50:57,008 instead of `find_packages(...)`/`find:`). 2024-09-19T20:50:57,008 You can read more about "package discovery" on setuptools documentation page: 2024-09-19T20:50:57,008 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-09-19T20:50:57,008 If you don't want 'gillespy2.solvers.cpp.c_base.ssa_cpp_solver' to be distributed and are 2024-09-19T20:50:57,008 already explicitly excluding 'gillespy2.solvers.cpp.c_base.ssa_cpp_solver' via 2024-09-19T20:50:57,008 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-09-19T20:50:57,009 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-09-19T20:50:57,009 combination with a more fine grained `package-data` configuration. 2024-09-19T20:50:57,009 You can read more about "package data files" on setuptools documentation page: 2024-09-19T20:50:57,009 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-09-19T20:50:57,010 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-09-19T20:50:57,010 even if it does not contain any `.py` files. 2024-09-19T20:50:57,010 On the other hand, currently there is no concept of package data 2024-09-19T20:50:57,010 directory, all directories are treated like packages. 2024-09-19T20:50:57,010 ******************************************************************************** 2024-09-19T20:50:57,010 !! 2024-09-19T20:50:57,010 check.warn(importable) 2024-09-19T20:50:57,011 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gillespy2.solvers.cpp.c_base.tau_hybrid_cpp_solver' is absent from the `packages` configuration. 2024-09-19T20:50:57,011 !! 2024-09-19T20:50:57,011 ******************************************************************************** 2024-09-19T20:50:57,011 ############################ 2024-09-19T20:50:57,011 # Package would be ignored # 2024-09-19T20:50:57,011 ############################ 2024-09-19T20:50:57,011 Python recognizes 'gillespy2.solvers.cpp.c_base.tau_hybrid_cpp_solver' as an importable package[^1], 2024-09-19T20:50:57,012 but it is absent from setuptools' `packages` configuration. 2024-09-19T20:50:57,012 This leads to an ambiguous overall configuration. If you want to distribute this 2024-09-19T20:50:57,012 package, please make sure that 'gillespy2.solvers.cpp.c_base.tau_hybrid_cpp_solver' is explicitly added 2024-09-19T20:50:57,012 to the `packages` configuration field. 2024-09-19T20:50:57,012 Alternatively, you can also rely on setuptools' discovery methods 2024-09-19T20:50:57,012 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-09-19T20:50:57,013 instead of `find_packages(...)`/`find:`). 2024-09-19T20:50:57,013 You can read more about "package discovery" on setuptools documentation page: 2024-09-19T20:50:57,013 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-09-19T20:50:57,013 If you don't want 'gillespy2.solvers.cpp.c_base.tau_hybrid_cpp_solver' to be distributed and are 2024-09-19T20:50:57,013 already explicitly excluding 'gillespy2.solvers.cpp.c_base.tau_hybrid_cpp_solver' via 2024-09-19T20:50:57,014 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-09-19T20:50:57,014 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-09-19T20:50:57,014 combination with a more fine grained `package-data` configuration. 2024-09-19T20:50:57,014 You can read more about "package data files" on setuptools documentation page: 2024-09-19T20:50:57,014 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-09-19T20:50:57,015 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-09-19T20:50:57,015 even if it does not contain any `.py` files. 2024-09-19T20:50:57,015 On the other hand, currently there is no concept of package data 2024-09-19T20:50:57,015 directory, all directories are treated like packages. 2024-09-19T20:50:57,015 ******************************************************************************** 2024-09-19T20:50:57,016 !! 2024-09-19T20:50:57,016 check.warn(importable) 2024-09-19T20:50:57,016 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gillespy2.solvers.cpp.c_base.tau_leaping_cpp_solver' is absent from the `packages` configuration. 2024-09-19T20:50:57,016 !! 2024-09-19T20:50:57,016 ******************************************************************************** 2024-09-19T20:50:57,016 ############################ 2024-09-19T20:50:57,016 # Package would be ignored # 2024-09-19T20:50:57,017 ############################ 2024-09-19T20:50:57,017 Python recognizes 'gillespy2.solvers.cpp.c_base.tau_leaping_cpp_solver' as an importable package[^1], 2024-09-19T20:50:57,017 but it is absent from setuptools' `packages` configuration. 2024-09-19T20:50:57,017 This leads to an ambiguous overall configuration. If you want to distribute this 2024-09-19T20:50:57,017 package, please make sure that 'gillespy2.solvers.cpp.c_base.tau_leaping_cpp_solver' is explicitly added 2024-09-19T20:50:57,017 to the `packages` configuration field. 2024-09-19T20:50:57,018 Alternatively, you can also rely on setuptools' discovery methods 2024-09-19T20:50:57,018 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-09-19T20:50:57,018 instead of `find_packages(...)`/`find:`). 2024-09-19T20:50:57,018 You can read more about "package discovery" on setuptools documentation page: 2024-09-19T20:50:57,018 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-09-19T20:50:57,018 If you don't want 'gillespy2.solvers.cpp.c_base.tau_leaping_cpp_solver' to be distributed and are 2024-09-19T20:50:57,019 already explicitly excluding 'gillespy2.solvers.cpp.c_base.tau_leaping_cpp_solver' via 2024-09-19T20:50:57,019 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-09-19T20:50:57,019 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-09-19T20:50:57,019 combination with a more fine grained `package-data` configuration. 2024-09-19T20:50:57,019 You can read more about "package data files" on setuptools documentation page: 2024-09-19T20:50:57,019 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-09-19T20:50:57,020 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-09-19T20:50:57,020 even if it does not contain any `.py` files. 2024-09-19T20:50:57,020 On the other hand, currently there is no concept of package data 2024-09-19T20:50:57,020 directory, all directories are treated like packages. 2024-09-19T20:50:57,020 ******************************************************************************** 2024-09-19T20:50:57,021 !! 2024-09-19T20:50:57,021 check.warn(importable) 2024-09-19T20:50:57,021 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'gillespy2.solvers.cpp.c_base.template' is absent from the `packages` configuration. 2024-09-19T20:50:57,021 !! 2024-09-19T20:50:57,021 ******************************************************************************** 2024-09-19T20:50:57,021 ############################ 2024-09-19T20:50:57,021 # Package would be ignored # 2024-09-19T20:50:57,022 ############################ 2024-09-19T20:50:57,022 Python recognizes 'gillespy2.solvers.cpp.c_base.template' as an importable package[^1], 2024-09-19T20:50:57,022 but it is absent from setuptools' `packages` configuration. 2024-09-19T20:50:57,022 This leads to an ambiguous overall configuration. If you want to distribute this 2024-09-19T20:50:57,022 package, please make sure that 'gillespy2.solvers.cpp.c_base.template' is explicitly added 2024-09-19T20:50:57,022 to the `packages` configuration field. 2024-09-19T20:50:57,023 Alternatively, you can also rely on setuptools' discovery methods 2024-09-19T20:50:57,023 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-09-19T20:50:57,023 instead of `find_packages(...)`/`find:`). 2024-09-19T20:50:57,023 You can read more about "package discovery" on setuptools documentation page: 2024-09-19T20:50:57,023 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-09-19T20:50:57,024 If you don't want 'gillespy2.solvers.cpp.c_base.template' to be distributed and are 2024-09-19T20:50:57,024 already explicitly excluding 'gillespy2.solvers.cpp.c_base.template' via 2024-09-19T20:50:57,024 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-09-19T20:50:57,024 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-09-19T20:50:57,024 combination with a more fine grained `package-data` configuration. 2024-09-19T20:50:57,024 You can read more about "package data files" on setuptools documentation page: 2024-09-19T20:50:57,024 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-09-19T20:50:57,025 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-09-19T20:50:57,025 even if it does not contain any `.py` files. 2024-09-19T20:50:57,025 On the other hand, currently there is no concept of package data 2024-09-19T20:50:57,025 directory, all directories are treated like packages. 2024-09-19T20:50:57,025 ******************************************************************************** 2024-09-19T20:50:57,026 !! 2024-09-19T20:50:57,026 check.warn(importable) 2024-09-19T20:50:57,026 creating build/lib/gillespy2/solvers/cpp/c_base 2024-09-19T20:50:57,026 copying gillespy2/solvers/cpp/c_base/SConscript -> build/lib/gillespy2/solvers/cpp/c_base 2024-09-19T20:50:57,026 copying gillespy2/solvers/cpp/c_base/arg_parser.cpp -> build/lib/gillespy2/solvers/cpp/c_base 2024-09-19T20:50:57,026 copying gillespy2/solvers/cpp/c_base/arg_parser.h -> build/lib/gillespy2/solvers/cpp/c_base 2024-09-19T20:50:57,026 copying gillespy2/solvers/cpp/c_base/model.cpp -> build/lib/gillespy2/solvers/cpp/c_base 2024-09-19T20:50:57,026 copying gillespy2/solvers/cpp/c_base/model.h -> build/lib/gillespy2/solvers/cpp/c_base 2024-09-19T20:50:57,027 creating build/lib/gillespy2/solvers/cpp/c_base/Sundials 2024-09-19T20:50:57,027 copying gillespy2/solvers/cpp/c_base/Sundials/LICENSE -> build/lib/gillespy2/solvers/cpp/c_base/Sundials 2024-09-19T20:50:57,027 copying gillespy2/solvers/cpp/c_base/Sundials/NOTICE -> build/lib/gillespy2/solvers/cpp/c_base/Sundials 2024-09-19T20:50:57,027 copying gillespy2/solvers/cpp/c_base/Sundials/README.md -> build/lib/gillespy2/solvers/cpp/c_base/Sundials 2024-09-19T20:50:57,027 copying gillespy2/solvers/cpp/c_base/Sundials/SConscript -> build/lib/gillespy2/solvers/cpp/c_base/Sundials 2024-09-19T20:50:57,027 creating build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,027 copying gillespy2/solvers/cpp/c_base/Sundials/include/cvode.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,028 copying gillespy2/solvers/cpp/c_base/Sundials/include/cvode_ls.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,031 copying gillespy2/solvers/cpp/c_base/Sundials/include/cvode_proj.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,033 copying gillespy2/solvers/cpp/c_base/Sundials/include/cvode_spils.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,035 copying gillespy2/solvers/cpp/c_base/Sundials/include/nvector_serial.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,037 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_band.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,039 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_config.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,042 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_direct.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,045 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_iterative.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,047 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_linearsolver.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,050 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_math.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,052 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_matrix.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,055 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nonlinearsolver.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,057 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,060 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector_senswrapper.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,062 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_types.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,064 copying gillespy2/solvers/cpp/c_base/Sundials/include/sundials_version.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,066 copying gillespy2/solvers/cpp/c_base/Sundials/include/sunlinsol_spgmr.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,069 copying gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_band.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,071 copying gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_dense.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,073 copying gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_sparse.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,075 copying gillespy2/solvers/cpp/c_base/Sundials/include/sunnonlinsol_newton.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,078 creating build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,079 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,084 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_direct.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,086 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_fused_stubs.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,089 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_impl.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,091 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_io.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,094 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,098 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls_impl.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,100 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_nls.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,103 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,105 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj_impl.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,107 copying gillespy2/solvers/cpp/c_base/Sundials/src/cvode_spils.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,109 copying gillespy2/solvers/cpp/c_base/Sundials/src/nvector_serial.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,113 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_band.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,115 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_debug.h -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,117 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_iterative.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,119 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_linearsolver.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,121 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_math.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,123 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_matrix.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,126 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nonlinearsolver.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,129 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,131 copying gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector_senswrapper.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,134 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_band.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,136 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_dense.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,138 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_spgmr.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,141 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_band.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,144 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_dense.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,146 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_fixedpoint.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,149 copying gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_newton.c -> build/lib/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,152 creating build/lib/gillespy2/solvers/cpp/c_base/Tau 2024-09-19T20:50:57,153 copying gillespy2/solvers/cpp/c_base/Tau/SConscript -> build/lib/gillespy2/solvers/cpp/c_base/Tau 2024-09-19T20:50:57,155 copying gillespy2/solvers/cpp/c_base/Tau/tau.cpp -> build/lib/gillespy2/solvers/cpp/c_base/Tau 2024-09-19T20:50:57,157 copying gillespy2/solvers/cpp/c_base/Tau/tau.h -> build/lib/gillespy2/solvers/cpp/c_base/Tau 2024-09-19T20:50:57,160 creating build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2024-09-19T20:50:57,161 copying gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESimulation.cpp -> build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2024-09-19T20:50:57,163 copying gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.cpp -> build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2024-09-19T20:50:57,165 copying gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.h -> build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2024-09-19T20:50:57,167 copying gillespy2/solvers/cpp/c_base/ode_cpp_solver/SConscript -> build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2024-09-19T20:50:57,169 creating build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2024-09-19T20:50:57,170 copying gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SConscript -> build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2024-09-19T20:50:57,172 copying gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASimulation.cpp -> build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2024-09-19T20:50:57,174 copying gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.cpp -> build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2024-09-19T20:50:57,177 copying gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.h -> build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2024-09-19T20:50:57,178 creating build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,179 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,182 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.h -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,185 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/SConscript -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,186 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSimulation.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,188 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,191 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.h -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,193 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,195 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.h -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,197 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,200 copying gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.h -> build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,202 creating build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2024-09-19T20:50:57,203 copying gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/SConscript -> build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2024-09-19T20:50:57,205 copying gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSimulation.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2024-09-19T20:50:57,207 copying gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.cpp -> build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2024-09-19T20:50:57,209 copying gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.h -> build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2024-09-19T20:50:57,211 creating build/lib/gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,212 copying gillespy2/solvers/cpp/c_base/template/template.cpp -> build/lib/gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,215 copying gillespy2/solvers/cpp/c_base/template/template.h -> build/lib/gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,217 copying gillespy2/solvers/cpp/c_base/template/template_defaults.h -> build/lib/gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,219 copying gillespy2/solvers/cpp/c_base/template/template_definitions.h -> build/lib/gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,221 copying gillespy2/solvers/cpp/c_base/template/template_opts.h -> build/lib/gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,223 copying gillespy2/solvers/cpp/c_base/template/template_params.h -> build/lib/gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,225 copying gillespy2/solvers/cpp/build/SConstruct -> build/lib/gillespy2/solvers/cpp/build 2024-09-19T20:50:57,258 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-09-19T20:50:57,259 !! 2024-09-19T20:50:57,259 ******************************************************************************** 2024-09-19T20:50:57,259 Please avoid running ``setup.py`` directly. 2024-09-19T20:50:57,259 Instead, use pypa/build, pypa/installer or other 2024-09-19T20:50:57,259 standards-based tools. 2024-09-19T20:50:57,259 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-09-19T20:50:57,260 ******************************************************************************** 2024-09-19T20:50:57,260 !! 2024-09-19T20:50:57,260 self.initialize_options() 2024-09-19T20:50:57,284 installing to build/bdist.linux-armv7l/wheel 2024-09-19T20:50:57,284 running install 2024-09-19T20:50:57,309 running install_lib 2024-09-19T20:50:57,336 creating build/bdist.linux-armv7l 2024-09-19T20:50:57,336 creating build/bdist.linux-armv7l/wheel 2024-09-19T20:50:57,338 creating build/bdist.linux-armv7l/wheel/gillespy2 2024-09-19T20:50:57,339 creating build/bdist.linux-armv7l/wheel/gillespy2/stochss 2024-09-19T20:50:57,340 copying build/lib/gillespy2/stochss/__init__.py -> build/bdist.linux-armv7l/wheel/./gillespy2/stochss 2024-09-19T20:50:57,342 copying build/lib/gillespy2/stochss/StochSSexport.py -> build/bdist.linux-armv7l/wheel/./gillespy2/stochss 2024-09-19T20:50:57,344 copying build/lib/gillespy2/__init__.py -> build/bdist.linux-armv7l/wheel/./gillespy2 2024-09-19T20:50:57,346 creating build/bdist.linux-armv7l/wheel/gillespy2/core 2024-09-19T20:50:57,347 copying build/lib/gillespy2/core/liveGraphing.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,350 copying build/lib/gillespy2/core/assignmentrule.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,351 copying build/lib/gillespy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,353 copying build/lib/gillespy2/core/cleanup.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,354 copying build/lib/gillespy2/core/timespan.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,357 copying build/lib/gillespy2/core/functiondefinition.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,359 copying build/lib/gillespy2/core/gillespySolver.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,360 copying build/lib/gillespy2/core/gillespyError.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,362 copying build/lib/gillespy2/core/sortableobject.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,364 copying build/lib/gillespy2/core/model.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,367 copying build/lib/gillespy2/core/raterule.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,369 copying build/lib/gillespy2/core/parameter.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,371 copying build/lib/gillespy2/core/species.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,373 copying build/lib/gillespy2/core/results.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,376 copying build/lib/gillespy2/core/reaction.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,379 copying build/lib/gillespy2/core/events.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,381 copying build/lib/gillespy2/core/jsonify.py -> build/bdist.linux-armv7l/wheel/./gillespy2/core 2024-09-19T20:50:57,384 creating build/bdist.linux-armv7l/wheel/gillespy2/sbml 2024-09-19T20:50:57,385 copying build/lib/gillespy2/sbml/__init__.py -> build/bdist.linux-armv7l/wheel/./gillespy2/sbml 2024-09-19T20:50:57,387 copying build/lib/gillespy2/sbml/SBMLexport.py -> build/bdist.linux-armv7l/wheel/./gillespy2/sbml 2024-09-19T20:50:57,389 copying build/lib/gillespy2/sbml/SBMLimport.py -> build/bdist.linux-armv7l/wheel/./gillespy2/sbml 2024-09-19T20:50:57,392 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers 2024-09-19T20:50:57,393 copying build/lib/gillespy2/solvers/__init__.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers 2024-09-19T20:50:57,395 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/utilities 2024-09-19T20:50:57,396 copying build/lib/gillespy2/solvers/utilities/solverutils.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/utilities 2024-09-19T20:50:57,398 copying build/lib/gillespy2/solvers/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/utilities 2024-09-19T20:50:57,400 copying build/lib/gillespy2/solvers/utilities/cpp_support_test.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/utilities 2024-09-19T20:50:57,402 copying build/lib/gillespy2/solvers/utilities/Tau.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/utilities 2024-09-19T20:50:57,405 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/numpy 2024-09-19T20:50:57,405 copying build/lib/gillespy2/solvers/numpy/__init__.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/numpy 2024-09-19T20:50:57,407 copying build/lib/gillespy2/solvers/numpy/tau_leaping_solver.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/numpy 2024-09-19T20:50:57,410 copying build/lib/gillespy2/solvers/numpy/CLE_solver.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/numpy 2024-09-19T20:50:57,412 copying build/lib/gillespy2/solvers/numpy/ode_solver.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/numpy 2024-09-19T20:50:57,415 copying build/lib/gillespy2/solvers/numpy/ssa_solver.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/numpy 2024-09-19T20:50:57,417 copying build/lib/gillespy2/solvers/numpy/tau_hybrid_solver.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/numpy 2024-09-19T20:50:57,421 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp 2024-09-19T20:50:57,422 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base 2024-09-19T20:50:57,423 copying build/lib/gillespy2/solvers/cpp/c_base/model.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base 2024-09-19T20:50:57,426 copying build/lib/gillespy2/solvers/cpp/c_base/arg_parser.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base 2024-09-19T20:50:57,428 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials 2024-09-19T20:50:57,429 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/README.md -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials 2024-09-19T20:50:57,431 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/SConscript -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials 2024-09-19T20:50:57,433 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/LICENSE -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials 2024-09-19T20:50:57,434 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/NOTICE -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials 2024-09-19T20:50:57,437 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,438 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,440 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj_impl.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,442 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,447 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls_impl.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,449 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_spgmr.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,452 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_nls.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,454 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_direct.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,456 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_newton.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,458 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_fixedpoint.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,461 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_io.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,463 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_dense.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,466 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_linearsolver.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,467 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,471 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/nvector_serial.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,474 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_fused_stubs.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,476 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_math.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,478 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector_senswrapper.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,480 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_iterative.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,482 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_band.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,484 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_spils.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,486 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/cvode_impl.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,489 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_dense.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,491 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_band.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,493 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_debug.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,495 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_matrix.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,497 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_band.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,499 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,502 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nonlinearsolver.c -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/src 2024-09-19T20:50:57,504 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,505 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/cvode_proj.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,507 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nonlinearsolver.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,509 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_math.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,512 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/cvode.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,514 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_types.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,516 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_band.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,518 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_config.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,520 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_matrix.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,522 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector_senswrapper.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,525 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_band.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,527 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sunnonlinsol_newton.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,529 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,531 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_iterative.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,534 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/cvode_ls.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,536 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sunlinsol_spgmr.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,538 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_dense.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,540 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_direct.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,542 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/nvector_serial.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,545 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/cvode_spils.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,546 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_linearsolver.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,549 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_sparse.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,551 copying build/lib/gillespy2/solvers/cpp/c_base/Sundials/include/sundials_version.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Sundials/include 2024-09-19T20:50:57,553 copying build/lib/gillespy2/solvers/cpp/c_base/model.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base 2024-09-19T20:50:57,555 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/Tau 2024-09-19T20:50:57,556 copying build/lib/gillespy2/solvers/cpp/c_base/Tau/SConscript -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Tau 2024-09-19T20:50:57,558 copying build/lib/gillespy2/solvers/cpp/c_base/Tau/tau.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Tau 2024-09-19T20:50:57,560 copying build/lib/gillespy2/solvers/cpp/c_base/Tau/tau.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/Tau 2024-09-19T20:50:57,562 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,563 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,565 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSimulation.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,567 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,569 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,571 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,573 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/SConscript -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,575 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,577 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,579 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,582 copying build/lib/gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver 2024-09-19T20:50:57,585 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,586 copying build/lib/gillespy2/solvers/cpp/c_base/template/template_params.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,588 copying build/lib/gillespy2/solvers/cpp/c_base/template/template.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,590 copying build/lib/gillespy2/solvers/cpp/c_base/template/template_defaults.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,592 copying build/lib/gillespy2/solvers/cpp/c_base/template/template_opts.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,593 copying build/lib/gillespy2/solvers/cpp/c_base/template/template.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,595 copying build/lib/gillespy2/solvers/cpp/c_base/template/template_definitions.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/template 2024-09-19T20:50:57,597 copying build/lib/gillespy2/solvers/cpp/c_base/SConscript -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base 2024-09-19T20:50:57,599 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2024-09-19T20:50:57,600 copying build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2024-09-19T20:50:57,602 copying build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSimulation.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2024-09-19T20:50:57,604 copying build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/SConscript -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2024-09-19T20:50:57,606 copying build/lib/gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver 2024-09-19T20:50:57,608 copying build/lib/gillespy2/solvers/cpp/c_base/arg_parser.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base 2024-09-19T20:50:57,611 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2024-09-19T20:50:57,611 copying build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2024-09-19T20:50:57,614 copying build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SConscript -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2024-09-19T20:50:57,615 copying build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASimulation.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2024-09-19T20:50:57,617 copying build/lib/gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/ssa_cpp_solver 2024-09-19T20:50:57,619 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/c_base/ode_cpp_solver 2024-09-19T20:50:57,620 copying build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.h -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/ode_cpp_solver 2024-09-19T20:50:57,622 copying build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/ode_cpp_solver 2024-09-19T20:50:57,624 copying build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver/SConscript -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/ode_cpp_solver 2024-09-19T20:50:57,626 copying build/lib/gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESimulation.cpp -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/c_base/ode_cpp_solver 2024-09-19T20:50:57,628 copying build/lib/gillespy2/solvers/cpp/ode_c_solver.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp 2024-09-19T20:50:57,630 copying build/lib/gillespy2/solvers/cpp/__init__.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp 2024-09-19T20:50:57,633 creating build/bdist.linux-armv7l/wheel/gillespy2/solvers/cpp/build 2024-09-19T20:50:57,634 copying build/lib/gillespy2/solvers/cpp/build/make.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/build 2024-09-19T20:50:57,636 copying build/lib/gillespy2/solvers/cpp/build/SConstruct -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/build 2024-09-19T20:50:57,638 copying build/lib/gillespy2/solvers/cpp/build/__init__.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/build 2024-09-19T20:50:57,639 copying build/lib/gillespy2/solvers/cpp/build/template_gen.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/build 2024-09-19T20:50:57,642 copying build/lib/gillespy2/solvers/cpp/build/build_engine.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/build 2024-09-19T20:50:57,644 copying build/lib/gillespy2/solvers/cpp/build/expression.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp/build 2024-09-19T20:50:57,646 copying build/lib/gillespy2/solvers/cpp/ssa_c_solver.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp 2024-09-19T20:50:57,648 copying build/lib/gillespy2/solvers/cpp/tau_hybrid_c_solver.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp 2024-09-19T20:50:57,651 copying build/lib/gillespy2/solvers/cpp/tau_leaping_c_solver.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp 2024-09-19T20:50:57,653 copying build/lib/gillespy2/solvers/cpp/c_solver.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp 2024-09-19T20:50:57,655 copying build/lib/gillespy2/solvers/cpp/c_decoder.py -> build/bdist.linux-armv7l/wheel/./gillespy2/solvers/cpp 2024-09-19T20:50:57,658 copying build/lib/gillespy2/__version__.py -> build/bdist.linux-armv7l/wheel/./gillespy2 2024-09-19T20:50:57,659 running install_egg_info 2024-09-19T20:50:57,686 Copying gillespy2.egg-info to build/bdist.linux-armv7l/wheel/./gillespy2-1.8.3-py3.9.egg-info 2024-09-19T20:50:57,697 running install_scripts 2024-09-19T20:50:57,717 creating build/bdist.linux-armv7l/wheel/gillespy2-1.8.3.dist-info/WHEEL 2024-09-19T20:50:57,720 creating '/tmp/pip-wheel-qbd13_36/gillespy2-1.8.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-09-19T20:50:57,722 adding 'gillespy2/__init__.py' 2024-09-19T20:50:57,724 adding 'gillespy2/__version__.py' 2024-09-19T20:50:57,726 adding 'gillespy2/core/__init__.py' 2024-09-19T20:50:57,727 adding 'gillespy2/core/assignmentrule.py' 2024-09-19T20:50:57,728 adding 'gillespy2/core/cleanup.py' 2024-09-19T20:50:57,730 adding 'gillespy2/core/events.py' 2024-09-19T20:50:57,732 adding 'gillespy2/core/functiondefinition.py' 2024-09-19T20:50:57,733 adding 'gillespy2/core/gillespyError.py' 2024-09-19T20:50:57,735 adding 'gillespy2/core/gillespySolver.py' 2024-09-19T20:50:57,737 adding 'gillespy2/core/jsonify.py' 2024-09-19T20:50:57,739 adding 'gillespy2/core/liveGraphing.py' 2024-09-19T20:50:57,747 adding 'gillespy2/core/model.py' 2024-09-19T20:50:57,749 adding 'gillespy2/core/parameter.py' 2024-09-19T20:50:57,750 adding 'gillespy2/core/raterule.py' 2024-09-19T20:50:57,754 adding 'gillespy2/core/reaction.py' 2024-09-19T20:50:57,757 adding 'gillespy2/core/results.py' 2024-09-19T20:50:57,759 adding 'gillespy2/core/sortableobject.py' 2024-09-19T20:50:57,761 adding 'gillespy2/core/species.py' 2024-09-19T20:50:57,762 adding 'gillespy2/core/timespan.py' 2024-09-19T20:50:57,765 adding 'gillespy2/sbml/SBMLexport.py' 2024-09-19T20:50:57,767 adding 'gillespy2/sbml/SBMLimport.py' 2024-09-19T20:50:57,769 adding 'gillespy2/sbml/__init__.py' 2024-09-19T20:50:57,770 adding 'gillespy2/solvers/__init__.py' 2024-09-19T20:50:57,772 adding 'gillespy2/solvers/cpp/__init__.py' 2024-09-19T20:50:57,774 adding 'gillespy2/solvers/cpp/c_decoder.py' 2024-09-19T20:50:57,777 adding 'gillespy2/solvers/cpp/c_solver.py' 2024-09-19T20:50:57,779 adding 'gillespy2/solvers/cpp/ode_c_solver.py' 2024-09-19T20:50:57,780 adding 'gillespy2/solvers/cpp/ssa_c_solver.py' 2024-09-19T20:50:57,783 adding 'gillespy2/solvers/cpp/tau_hybrid_c_solver.py' 2024-09-19T20:50:57,785 adding 'gillespy2/solvers/cpp/tau_leaping_c_solver.py' 2024-09-19T20:50:57,787 adding 'gillespy2/solvers/cpp/build/SConstruct' 2024-09-19T20:50:57,788 adding 'gillespy2/solvers/cpp/build/__init__.py' 2024-09-19T20:50:57,790 adding 'gillespy2/solvers/cpp/build/build_engine.py' 2024-09-19T20:50:57,792 adding 'gillespy2/solvers/cpp/build/expression.py' 2024-09-19T20:50:57,794 adding 'gillespy2/solvers/cpp/build/make.py' 2024-09-19T20:50:57,796 adding 'gillespy2/solvers/cpp/build/template_gen.py' 2024-09-19T20:50:57,799 adding 'gillespy2/solvers/cpp/c_base/SConscript' 2024-09-19T20:50:57,800 adding 'gillespy2/solvers/cpp/c_base/arg_parser.cpp' 2024-09-19T20:50:57,801 adding 'gillespy2/solvers/cpp/c_base/arg_parser.h' 2024-09-19T20:50:57,803 adding 'gillespy2/solvers/cpp/c_base/model.cpp' 2024-09-19T20:50:57,805 adding 'gillespy2/solvers/cpp/c_base/model.h' 2024-09-19T20:50:57,807 adding 'gillespy2/solvers/cpp/c_base/Sundials/LICENSE' 2024-09-19T20:50:57,808 adding 'gillespy2/solvers/cpp/c_base/Sundials/NOTICE' 2024-09-19T20:50:57,809 adding 'gillespy2/solvers/cpp/c_base/Sundials/README.md' 2024-09-19T20:50:57,811 adding 'gillespy2/solvers/cpp/c_base/Sundials/SConscript' 2024-09-19T20:50:57,813 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/cvode.h' 2024-09-19T20:50:57,815 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/cvode_ls.h' 2024-09-19T20:50:57,816 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/cvode_proj.h' 2024-09-19T20:50:57,818 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/cvode_spils.h' 2024-09-19T20:50:57,819 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/nvector_serial.h' 2024-09-19T20:50:57,821 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_band.h' 2024-09-19T20:50:57,822 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_config.h' 2024-09-19T20:50:57,824 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_direct.h' 2024-09-19T20:50:57,826 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_iterative.h' 2024-09-19T20:50:57,828 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_linearsolver.h' 2024-09-19T20:50:57,830 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_math.h' 2024-09-19T20:50:57,831 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_matrix.h' 2024-09-19T20:50:57,833 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nonlinearsolver.h' 2024-09-19T20:50:57,835 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector.h' 2024-09-19T20:50:57,836 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_nvector_senswrapper.h' 2024-09-19T20:50:57,838 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_types.h' 2024-09-19T20:50:57,839 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sundials_version.h' 2024-09-19T20:50:57,841 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sunlinsol_spgmr.h' 2024-09-19T20:50:57,842 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_band.h' 2024-09-19T20:50:57,843 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_dense.h' 2024-09-19T20:50:57,845 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sunmatrix_sparse.h' 2024-09-19T20:50:57,846 adding 'gillespy2/solvers/cpp/c_base/Sundials/include/sunnonlinsol_newton.h' 2024-09-19T20:50:57,863 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode.c' 2024-09-19T20:50:57,866 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_direct.c' 2024-09-19T20:50:57,867 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_fused_stubs.c' 2024-09-19T20:50:57,871 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_impl.h' 2024-09-19T20:50:57,874 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_io.c' 2024-09-19T20:50:57,880 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls.c' 2024-09-19T20:50:57,882 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_ls_impl.h' 2024-09-19T20:50:57,884 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_nls.c' 2024-09-19T20:50:57,886 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj.c' 2024-09-19T20:50:57,887 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_proj_impl.h' 2024-09-19T20:50:57,889 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/cvode_spils.c' 2024-09-19T20:50:57,893 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/nvector_serial.c' 2024-09-19T20:50:57,895 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_band.c' 2024-09-19T20:50:57,896 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_debug.h' 2024-09-19T20:50:57,898 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_iterative.c' 2024-09-19T20:50:57,899 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_linearsolver.c' 2024-09-19T20:50:57,901 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_math.c' 2024-09-19T20:50:57,902 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_matrix.c' 2024-09-19T20:50:57,904 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nonlinearsolver.c' 2024-09-19T20:50:57,906 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector.c' 2024-09-19T20:50:57,908 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sundials_nvector_senswrapper.c' 2024-09-19T20:50:57,910 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_band.c' 2024-09-19T20:50:57,912 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_dense.c' 2024-09-19T20:50:57,915 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunlinsol_spgmr.c' 2024-09-19T20:50:57,917 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_band.c' 2024-09-19T20:50:57,919 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunmatrix_dense.c' 2024-09-19T20:50:57,922 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_fixedpoint.c' 2024-09-19T20:50:57,924 adding 'gillespy2/solvers/cpp/c_base/Sundials/src/sunnonlinsol_newton.c' 2024-09-19T20:50:57,926 adding 'gillespy2/solvers/cpp/c_base/Tau/SConscript' 2024-09-19T20:50:57,928 adding 'gillespy2/solvers/cpp/c_base/Tau/tau.cpp' 2024-09-19T20:50:57,929 adding 'gillespy2/solvers/cpp/c_base/Tau/tau.h' 2024-09-19T20:50:57,931 adding 'gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESimulation.cpp' 2024-09-19T20:50:57,933 adding 'gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.cpp' 2024-09-19T20:50:57,934 adding 'gillespy2/solvers/cpp/c_base/ode_cpp_solver/ODESolver.h' 2024-09-19T20:50:57,935 adding 'gillespy2/solvers/cpp/c_base/ode_cpp_solver/SConscript' 2024-09-19T20:50:57,937 adding 'gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SConscript' 2024-09-19T20:50:57,939 adding 'gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASimulation.cpp' 2024-09-19T20:50:57,940 adding 'gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.cpp' 2024-09-19T20:50:57,942 adding 'gillespy2/solvers/cpp/c_base/ssa_cpp_solver/SSASolver.h' 2024-09-19T20:50:57,945 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.cpp' 2024-09-19T20:50:57,947 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/HybridModel.h' 2024-09-19T20:50:57,948 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/SConscript' 2024-09-19T20:50:57,950 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSimulation.cpp' 2024-09-19T20:50:57,952 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.cpp' 2024-09-19T20:50:57,954 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/TauHybridSolver.h' 2024-09-19T20:50:57,955 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.cpp' 2024-09-19T20:50:57,957 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/hybrid_template.h' 2024-09-19T20:50:57,959 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.cpp' 2024-09-19T20:50:57,961 adding 'gillespy2/solvers/cpp/c_base/tau_hybrid_cpp_solver/integrator.h' 2024-09-19T20:50:57,962 adding 'gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/SConscript' 2024-09-19T20:50:57,964 adding 'gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSimulation.cpp' 2024-09-19T20:50:57,966 adding 'gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.cpp' 2024-09-19T20:50:57,967 adding 'gillespy2/solvers/cpp/c_base/tau_leaping_cpp_solver/TauLeapingSolver.h' 2024-09-19T20:50:57,969 adding 'gillespy2/solvers/cpp/c_base/template/template.cpp' 2024-09-19T20:50:57,970 adding 'gillespy2/solvers/cpp/c_base/template/template.h' 2024-09-19T20:50:57,972 adding 'gillespy2/solvers/cpp/c_base/template/template_defaults.h' 2024-09-19T20:50:57,973 adding 'gillespy2/solvers/cpp/c_base/template/template_definitions.h' 2024-09-19T20:50:57,975 adding 'gillespy2/solvers/cpp/c_base/template/template_opts.h' 2024-09-19T20:50:57,976 adding 'gillespy2/solvers/cpp/c_base/template/template_params.h' 2024-09-19T20:50:57,979 adding 'gillespy2/solvers/numpy/CLE_solver.py' 2024-09-19T20:50:57,981 adding 'gillespy2/solvers/numpy/__init__.py' 2024-09-19T20:50:57,983 adding 'gillespy2/solvers/numpy/ode_solver.py' 2024-09-19T20:50:57,985 adding 'gillespy2/solvers/numpy/ssa_solver.py' 2024-09-19T20:50:57,993 adding 'gillespy2/solvers/numpy/tau_hybrid_solver.py' 2024-09-19T20:50:57,996 adding 'gillespy2/solvers/numpy/tau_leaping_solver.py' 2024-09-19T20:50:57,998 adding 'gillespy2/solvers/utilities/Tau.py' 2024-09-19T20:50:58,000 adding 'gillespy2/solvers/utilities/__init__.py' 2024-09-19T20:50:58,001 adding 'gillespy2/solvers/utilities/cpp_support_test.py' 2024-09-19T20:50:58,003 adding 'gillespy2/solvers/utilities/solverutils.py' 2024-09-19T20:50:58,005 adding 'gillespy2/stochss/StochSSexport.py' 2024-09-19T20:50:58,006 adding 'gillespy2/stochss/__init__.py' 2024-09-19T20:50:58,013 adding 'gillespy2-1.8.3.dist-info/LICENSE' 2024-09-19T20:50:58,016 adding 'gillespy2-1.8.3.dist-info/METADATA' 2024-09-19T20:50:58,017 adding 'gillespy2-1.8.3.dist-info/WHEEL' 2024-09-19T20:50:58,018 adding 'gillespy2-1.8.3.dist-info/top_level.txt' 2024-09-19T20:50:58,021 adding 'gillespy2-1.8.3.dist-info/RECORD' 2024-09-19T20:50:58,028 removing build/bdist.linux-armv7l/wheel 2024-09-19T20:50:58,166 Building wheel for gillespy2 (setup.py): finished with status 'done' 2024-09-19T20:50:58,173 Created wheel for gillespy2: filename=gillespy2-1.8.3-py3-none-any.whl size=398865 sha256=f08dc141522c952ce53035fbd2fe055dfb1e8e26bf47340d66f4bdd787672040 2024-09-19T20:50:58,174 Stored in directory: /tmp/pip-ephem-wheel-cache-lnfe3ier/wheels/0b/ae/47/91dc58ee943bb075f19a55beeed01289207894e26d9fd03414 2024-09-19T20:50:58,191 Successfully built gillespy2 2024-09-19T20:50:58,207 Removed build tracker: '/tmp/pip-build-tracker-rcexvouz'