2024-09-20T14:18:34,817 Created temporary directory: /tmp/pip-build-tracker-k9j6snz6
2024-09-20T14:18:34,818 Initialized build tracking at /tmp/pip-build-tracker-k9j6snz6
2024-09-20T14:18:34,819 Created build tracker: /tmp/pip-build-tracker-k9j6snz6
2024-09-20T14:18:34,819 Entered build tracker: /tmp/pip-build-tracker-k9j6snz6
2024-09-20T14:18:34,820 Created temporary directory: /tmp/pip-wheel-nq2l4taw
2024-09-20T14:18:34,824 Created temporary directory: /tmp/pip-ephem-wheel-cache-lnb55tf3
2024-09-20T14:18:34,869 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-09-20T14:18:34,872 2 location(s) to search for versions of papyrus-scripts:
2024-09-20T14:18:34,872 * https://pypi.org/simple/papyrus-scripts/
2024-09-20T14:18:34,872 * https://www.piwheels.org/simple/papyrus-scripts/
2024-09-20T14:18:34,872 Fetching project page and analyzing links: https://pypi.org/simple/papyrus-scripts/
2024-09-20T14:18:34,873 Getting page https://pypi.org/simple/papyrus-scripts/
2024-09-20T14:18:34,875 Found index url https://pypi.org/simple/
2024-09-20T14:18:35,087 Fetched page https://pypi.org/simple/papyrus-scripts/ as application/vnd.pypi.simple.v1+json
2024-09-20T14:18:35,090   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/b5/19/95564c6182f53424b98a9b226fad2732a775e1b03240f98026d1f4a31c09/papyrus_scripts-1.0.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2024-09-20T14:18:35,091   Found link https://files.pythonhosted.org/packages/a8/fa/c9965193e37d2e8d7d546604d0995edc8d5117401823c1db7f86b4039889/papyrus_scripts-1.0.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.0
2024-09-20T14:18:35,091   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/40/cb/13f41607756a77e4cd805fa9b08a8bc3ee15e5db1a8c072793d70b9af909/papyrus_scripts-1.0.1-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2024-09-20T14:18:35,092   Found link https://files.pythonhosted.org/packages/9e/74/fbeebe2236ef7fac6e618ef9340b1d0bd356968d8035d4e4c8d3518b2aef/papyrus_scripts-1.0.1.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.1
2024-09-20T14:18:35,093   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/37/e6/ce2206c4a5147ad1ce46002653ebea21ec6a11d1e14c8efb8ab1ce937503/papyrus_scripts-1.0.2-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2024-09-20T14:18:35,093   Found link https://files.pythonhosted.org/packages/6b/54/6ae4f489632303221c4e7e55bf7277cd1c8bbc6061531e898dcee8383ada/papyrus_scripts-1.0.2.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.2
2024-09-20T14:18:35,094   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/8f/3b/fefbe990c401b882b359c3827b6b8df211ee4722139c16133308b00515e4/papyrus_scripts-1.0.3-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2024-09-20T14:18:35,095   Found link https://files.pythonhosted.org/packages/c0/be/ef1fc8c69ba39ecf9d4a6d42ffcf25f07a7f8912fe1c15f1e77b40be8f90/papyrus_scripts-1.0.3.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.3
2024-09-20T14:18:35,096   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/7e/e4/88b6ad50b83e4845adb2ff52aeb8cfcfe5889546f64e73524d12b014f2cb/papyrus_scripts-2.0.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2024-09-20T14:18:35,096   Found link https://files.pythonhosted.org/packages/23/25/8dcbf7c4f30f10570ca5725953c1cf575520a085d4261646f77e65b113ea/papyrus_scripts-2.0.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.0.0
2024-09-20T14:18:35,097 Fetching project page and analyzing links: https://www.piwheels.org/simple/papyrus-scripts/
2024-09-20T14:18:35,098 Getting page https://www.piwheels.org/simple/papyrus-scripts/
2024-09-20T14:18:35,099 Found index url https://www.piwheels.org/simple/
2024-09-20T14:18:35,260 Fetched page https://www.piwheels.org/simple/papyrus-scripts/ as text/html
2024-09-20T14:18:35,262   Skipping link: No binaries permitted for papyrus-scripts: https://www.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.3-py3-none-any.whl#sha256=d8726fad87c54033c1ccfb24793cfe931514385e31f985decbd4db0359161f21 (from https://www.piwheels.org/simple/papyrus-scripts/)
2024-09-20T14:18:35,263   Skipping link: No binaries permitted for papyrus-scripts: https://www.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.2-py3-none-any.whl#sha256=0c5c255057debeeb39bc7754d5580f5017739a5511dfc5c8a0a4cea4381a216b (from https://www.piwheels.org/simple/papyrus-scripts/)
2024-09-20T14:18:35,264   Skipping link: No binaries permitted for papyrus-scripts: https://www.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.1-py3-none-any.whl#sha256=a9a05d11a4dab2af708d68a7d80f14bde89175c2655db1d624fecddf5e188e07 (from https://www.piwheels.org/simple/papyrus-scripts/)
2024-09-20T14:18:35,264   Skipping link: No binaries permitted for papyrus-scripts: https://www.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.0-py3-none-any.whl#sha256=0547595805abc574ec34f214d521dcf762c43e1c7da898f1bb95a2c6eda24460 (from https://www.piwheels.org/simple/papyrus-scripts/)
2024-09-20T14:18:35,265 Skipping link: not a file: https://www.piwheels.org/simple/papyrus-scripts/
2024-09-20T14:18:35,265 Skipping link: not a file: https://pypi.org/simple/papyrus-scripts/
2024-09-20T14:18:35,285 Given no hashes to check 1 links for project 'papyrus-scripts': discarding no candidates
2024-09-20T14:18:35,287 Collecting papyrus-scripts==2.0.0
2024-09-20T14:18:35,289   Created temporary directory: /tmp/pip-unpack-d38jwxs1
2024-09-20T14:18:35,522   Downloading papyrus_scripts-2.0.0.tar.gz (78 kB)
2024-09-20T14:18:35,644   Added papyrus-scripts==2.0.0 from https://files.pythonhosted.org/packages/23/25/8dcbf7c4f30f10570ca5725953c1cf575520a085d4261646f77e65b113ea/papyrus_scripts-2.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-k9j6snz6'
2024-09-20T14:18:35,646   Running setup.py (path:/tmp/pip-wheel-nq2l4taw/papyrus-scripts_03644d6e30bf4ca1a18d69ffe6fc29c7/setup.py) egg_info for package papyrus-scripts
2024-09-20T14:18:35,647   Created temporary directory: /tmp/pip-pip-egg-info-onfzpbfu
2024-09-20T14:18:35,647   Preparing metadata (setup.py): started
2024-09-20T14:18:35,648   Running command python setup.py egg_info
2024-09-20T14:18:36,824   running egg_info
2024-09-20T14:18:36,825   creating /tmp/pip-pip-egg-info-onfzpbfu/papyrus_scripts.egg-info
2024-09-20T14:18:36,853   writing /tmp/pip-pip-egg-info-onfzpbfu/papyrus_scripts.egg-info/PKG-INFO
2024-09-20T14:18:36,859   writing dependency_links to /tmp/pip-pip-egg-info-onfzpbfu/papyrus_scripts.egg-info/dependency_links.txt
2024-09-20T14:18:36,860   writing entry points to /tmp/pip-pip-egg-info-onfzpbfu/papyrus_scripts.egg-info/entry_points.txt
2024-09-20T14:18:36,863   writing requirements to /tmp/pip-pip-egg-info-onfzpbfu/papyrus_scripts.egg-info/requires.txt
2024-09-20T14:18:36,864   writing top-level names to /tmp/pip-pip-egg-info-onfzpbfu/papyrus_scripts.egg-info/top_level.txt
2024-09-20T14:18:36,866   writing manifest file '/tmp/pip-pip-egg-info-onfzpbfu/papyrus_scripts.egg-info/SOURCES.txt'
2024-09-20T14:18:36,955   reading manifest file '/tmp/pip-pip-egg-info-onfzpbfu/papyrus_scripts.egg-info/SOURCES.txt'
2024-09-20T14:18:36,957   adding license file 'LICENSE'
2024-09-20T14:18:36,959   writing manifest file '/tmp/pip-pip-egg-info-onfzpbfu/papyrus_scripts.egg-info/SOURCES.txt'
2024-09-20T14:18:37,071   Preparing metadata (setup.py): finished with status 'done'
2024-09-20T14:18:37,075   Source in /tmp/pip-wheel-nq2l4taw/papyrus-scripts_03644d6e30bf4ca1a18d69ffe6fc29c7 has version 2.0.0, which satisfies requirement papyrus-scripts==2.0.0 from https://files.pythonhosted.org/packages/23/25/8dcbf7c4f30f10570ca5725953c1cf575520a085d4261646f77e65b113ea/papyrus_scripts-2.0.0.tar.gz
2024-09-20T14:18:37,076   Removed papyrus-scripts==2.0.0 from https://files.pythonhosted.org/packages/23/25/8dcbf7c4f30f10570ca5725953c1cf575520a085d4261646f77e65b113ea/papyrus_scripts-2.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-k9j6snz6'
2024-09-20T14:18:37,085 Created temporary directory: /tmp/pip-unpack-8c767unr
2024-09-20T14:18:37,086 Created temporary directory: /tmp/pip-unpack-jolzuz_t
2024-09-20T14:18:37,087 Building wheels for collected packages: papyrus-scripts
2024-09-20T14:18:37,091   Created temporary directory: /tmp/pip-wheel-rmu7vpms
2024-09-20T14:18:37,091   Building wheel for papyrus-scripts (setup.py): started
2024-09-20T14:18:37,093   Destination directory: /tmp/pip-wheel-rmu7vpms
2024-09-20T14:18:37,093   Running command python setup.py bdist_wheel
2024-09-20T14:18:38,225   running bdist_wheel
2024-09-20T14:18:38,365   running build
2024-09-20T14:18:38,366   running build_py
2024-09-20T14:18:38,394   creating build
2024-09-20T14:18:38,395   creating build/lib
2024-09-20T14:18:38,396   creating build/lib/papyrus_scripts
2024-09-20T14:18:38,397   copying src/papyrus_scripts/neuralnet.py -> build/lib/papyrus_scripts
2024-09-20T14:18:38,400   copying src/papyrus_scripts/oop.py -> build/lib/papyrus_scripts
2024-09-20T14:18:38,403   copying src/papyrus_scripts/subsim_search.py -> build/lib/papyrus_scripts
2024-09-20T14:18:38,406   copying src/papyrus_scripts/matchRCSB.py -> build/lib/papyrus_scripts
2024-09-20T14:18:38,408   copying src/papyrus_scripts/__main__.py -> build/lib/papyrus_scripts
2024-09-20T14:18:38,409   copying src/papyrus_scripts/preprocess.py -> build/lib/papyrus_scripts
2024-09-20T14:18:38,412   copying src/papyrus_scripts/cli.py -> build/lib/papyrus_scripts
2024-09-20T14:18:38,415   copying src/papyrus_scripts/download.py -> build/lib/papyrus_scripts
2024-09-20T14:18:38,417   copying src/papyrus_scripts/__init__.py -> build/lib/papyrus_scripts
2024-09-20T14:18:38,419   copying src/papyrus_scripts/fingerprint.py -> build/lib/papyrus_scripts
2024-09-20T14:18:38,421   copying src/papyrus_scripts/reader.py -> build/lib/papyrus_scripts
2024-09-20T14:18:38,424   copying src/papyrus_scripts/modelling.py -> build/lib/papyrus_scripts
2024-09-20T14:18:38,428   creating build/lib/papyrus_scripts/utils
2024-09-20T14:18:38,429   copying src/papyrus_scripts/utils/UniprotMatch.py -> build/lib/papyrus_scripts/utils
2024-09-20T14:18:38,431   copying src/papyrus_scripts/utils/IO.py -> build/lib/papyrus_scripts/utils
2024-09-20T14:18:38,434   copying src/papyrus_scripts/utils/__init__.py -> build/lib/papyrus_scripts/utils
2024-09-20T14:18:38,436   copying src/papyrus_scripts/utils/mol_reader.py -> build/lib/papyrus_scripts/utils
2024-09-20T14:18:38,438   running egg_info
2024-09-20T14:18:38,464   writing src/papyrus_scripts.egg-info/PKG-INFO
2024-09-20T14:18:38,470   writing dependency_links to src/papyrus_scripts.egg-info/dependency_links.txt
2024-09-20T14:18:38,472   writing entry points to src/papyrus_scripts.egg-info/entry_points.txt
2024-09-20T14:18:38,474   writing requirements to src/papyrus_scripts.egg-info/requires.txt
2024-09-20T14:18:38,475   writing top-level names to src/papyrus_scripts.egg-info/top_level.txt
2024-09-20T14:18:38,508   reading manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt'
2024-09-20T14:18:38,512   adding license file 'LICENSE'
2024-09-20T14:18:38,514   writing manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt'
2024-09-20T14:18:38,518   copying src/papyrus_scripts/utils/aliases.json -> build/lib/papyrus_scripts/utils
2024-09-20T14:18:38,520   copying src/papyrus_scripts/utils/links.json -> build/lib/papyrus_scripts/utils
2024-09-20T14:18:38,550   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-09-20T14:18:38,551   !!

2024-09-20T14:18:38,552           ********************************************************************************
2024-09-20T14:18:38,553           Please avoid running ``setup.py`` directly.
2024-09-20T14:18:38,554           Instead, use pypa/build, pypa/installer or other
2024-09-20T14:18:38,554           standards-based tools.

2024-09-20T14:18:38,555           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-09-20T14:18:38,556           ********************************************************************************

2024-09-20T14:18:38,557   !!
2024-09-20T14:18:38,558     self.initialize_options()
2024-09-20T14:18:38,579   installing to build/bdist.linux-armv7l/wheel
2024-09-20T14:18:38,579   running install
2024-09-20T14:18:38,604   running install_lib
2024-09-20T14:18:38,630   creating build/bdist.linux-armv7l
2024-09-20T14:18:38,630   creating build/bdist.linux-armv7l/wheel
2024-09-20T14:18:38,632   creating build/bdist.linux-armv7l/wheel/papyrus_scripts
2024-09-20T14:18:38,633   copying build/lib/papyrus_scripts/neuralnet.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2024-09-20T14:18:38,635   copying build/lib/papyrus_scripts/oop.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2024-09-20T14:18:38,638   copying build/lib/papyrus_scripts/subsim_search.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2024-09-20T14:18:38,642   creating build/bdist.linux-armv7l/wheel/papyrus_scripts/utils
2024-09-20T14:18:38,643   copying build/lib/papyrus_scripts/utils/aliases.json -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils
2024-09-20T14:18:38,645   copying build/lib/papyrus_scripts/utils/UniprotMatch.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils
2024-09-20T14:18:38,648   copying build/lib/papyrus_scripts/utils/links.json -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils
2024-09-20T14:18:38,651   copying build/lib/papyrus_scripts/utils/IO.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils
2024-09-20T14:18:38,654   copying build/lib/papyrus_scripts/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils
2024-09-20T14:18:38,656   copying build/lib/papyrus_scripts/utils/mol_reader.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils
2024-09-20T14:18:38,659   copying build/lib/papyrus_scripts/matchRCSB.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2024-09-20T14:18:38,661   copying build/lib/papyrus_scripts/__main__.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2024-09-20T14:18:38,663   copying build/lib/papyrus_scripts/preprocess.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2024-09-20T14:18:38,666   copying build/lib/papyrus_scripts/cli.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2024-09-20T14:18:38,669   copying build/lib/papyrus_scripts/download.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2024-09-20T14:18:38,672   copying build/lib/papyrus_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2024-09-20T14:18:38,674   copying build/lib/papyrus_scripts/fingerprint.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2024-09-20T14:18:38,676   copying build/lib/papyrus_scripts/reader.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2024-09-20T14:18:38,679   copying build/lib/papyrus_scripts/modelling.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2024-09-20T14:18:38,682   running install_egg_info
2024-09-20T14:18:38,714   Copying src/papyrus_scripts.egg-info to build/bdist.linux-armv7l/wheel/./papyrus_scripts-2.0.0-py3.11.egg-info
2024-09-20T14:18:38,725   running install_scripts
2024-09-20T14:18:38,746   creating build/bdist.linux-armv7l/wheel/papyrus_scripts-2.0.0.dist-info/WHEEL
2024-09-20T14:18:38,748   creating '/tmp/pip-wheel-rmu7vpms/papyrus_scripts-2.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-09-20T14:18:38,751   adding 'papyrus_scripts/__init__.py'
2024-09-20T14:18:38,752   adding 'papyrus_scripts/__main__.py'
2024-09-20T14:18:38,755   adding 'papyrus_scripts/cli.py'
2024-09-20T14:18:38,757   adding 'papyrus_scripts/download.py'
2024-09-20T14:18:38,759   adding 'papyrus_scripts/fingerprint.py'
2024-09-20T14:18:38,761   adding 'papyrus_scripts/matchRCSB.py'
2024-09-20T14:18:38,767   adding 'papyrus_scripts/modelling.py'
2024-09-20T14:18:38,769   adding 'papyrus_scripts/neuralnet.py'
2024-09-20T14:18:38,772   adding 'papyrus_scripts/oop.py'
2024-09-20T14:18:38,777   adding 'papyrus_scripts/preprocess.py'
2024-09-20T14:18:38,779   adding 'papyrus_scripts/reader.py'
2024-09-20T14:18:38,784   adding 'papyrus_scripts/subsim_search.py'
2024-09-20T14:18:38,787   adding 'papyrus_scripts/utils/IO.py'
2024-09-20T14:18:38,790   adding 'papyrus_scripts/utils/UniprotMatch.py'
2024-09-20T14:18:38,791   adding 'papyrus_scripts/utils/__init__.py'
2024-09-20T14:18:38,792   adding 'papyrus_scripts/utils/aliases.json'
2024-09-20T14:18:38,794   adding 'papyrus_scripts/utils/links.json'
2024-09-20T14:18:38,796   adding 'papyrus_scripts/utils/mol_reader.py'
2024-09-20T14:18:38,798   adding 'papyrus_scripts-2.0.0.dist-info/LICENSE'
2024-09-20T14:18:38,800   adding 'papyrus_scripts-2.0.0.dist-info/METADATA'
2024-09-20T14:18:38,801   adding 'papyrus_scripts-2.0.0.dist-info/WHEEL'
2024-09-20T14:18:38,802   adding 'papyrus_scripts-2.0.0.dist-info/entry_points.txt'
2024-09-20T14:18:38,803   adding 'papyrus_scripts-2.0.0.dist-info/top_level.txt'
2024-09-20T14:18:38,804   adding 'papyrus_scripts-2.0.0.dist-info/RECORD'
2024-09-20T14:18:38,807   removing build/bdist.linux-armv7l/wheel
2024-09-20T14:18:38,931   Building wheel for papyrus-scripts (setup.py): finished with status 'done'
2024-09-20T14:18:38,934   Created wheel for papyrus-scripts: filename=papyrus_scripts-2.0.0-py3-none-any.whl size=79182 sha256=59b7c1af7bcffad2a4864853071d1d2023f12d66c2d94c77307da77d571736f3
2024-09-20T14:18:38,935   Stored in directory: /tmp/pip-ephem-wheel-cache-lnb55tf3/wheels/f3/b4/17/77182cf6f71b8f84f8f1f6d95ea2dc3b5f5d18d59a411ccb2c
2024-09-20T14:18:38,948 Successfully built papyrus-scripts
2024-09-20T14:18:38,953 Removed build tracker: '/tmp/pip-build-tracker-k9j6snz6'