2024-09-20T19:41:04,274 Created temporary directory: /tmp/pip-build-tracker-58wv1nwk 2024-09-20T19:41:04,275 Initialized build tracking at /tmp/pip-build-tracker-58wv1nwk 2024-09-20T19:41:04,276 Created build tracker: /tmp/pip-build-tracker-58wv1nwk 2024-09-20T19:41:04,276 Entered build tracker: /tmp/pip-build-tracker-58wv1nwk 2024-09-20T19:41:04,277 Created temporary directory: /tmp/pip-wheel-0p5fqewp 2024-09-20T19:41:04,281 Created temporary directory: /tmp/pip-ephem-wheel-cache-fzr9vv6t 2024-09-20T19:41:04,327 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-09-20T19:41:04,330 2 location(s) to search for versions of papyrus-scripts: 2024-09-20T19:41:04,330 * https://pypi.org/simple/papyrus-scripts/ 2024-09-20T19:41:04,330 * https://www.piwheels.org/simple/papyrus-scripts/ 2024-09-20T19:41:04,331 Fetching project page and analyzing links: https://pypi.org/simple/papyrus-scripts/ 2024-09-20T19:41:04,332 Getting page https://pypi.org/simple/papyrus-scripts/ 2024-09-20T19:41:04,334 Found index url https://pypi.org/simple/ 2024-09-20T19:41:04,553 Fetched page https://pypi.org/simple/papyrus-scripts/ as application/vnd.pypi.simple.v1+json 2024-09-20T19:41:04,556 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/b5/19/95564c6182f53424b98a9b226fad2732a775e1b03240f98026d1f4a31c09/papyrus_scripts-1.0.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2024-09-20T19:41:04,557 Found link https://files.pythonhosted.org/packages/a8/fa/c9965193e37d2e8d7d546604d0995edc8d5117401823c1db7f86b4039889/papyrus_scripts-1.0.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.0 2024-09-20T19:41:04,557 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/40/cb/13f41607756a77e4cd805fa9b08a8bc3ee15e5db1a8c072793d70b9af909/papyrus_scripts-1.0.1-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2024-09-20T19:41:04,558 Found link https://files.pythonhosted.org/packages/9e/74/fbeebe2236ef7fac6e618ef9340b1d0bd356968d8035d4e4c8d3518b2aef/papyrus_scripts-1.0.1.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.1 2024-09-20T19:41:04,559 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/37/e6/ce2206c4a5147ad1ce46002653ebea21ec6a11d1e14c8efb8ab1ce937503/papyrus_scripts-1.0.2-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2024-09-20T19:41:04,559 Found link https://files.pythonhosted.org/packages/6b/54/6ae4f489632303221c4e7e55bf7277cd1c8bbc6061531e898dcee8383ada/papyrus_scripts-1.0.2.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.2 2024-09-20T19:41:04,560 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/8f/3b/fefbe990c401b882b359c3827b6b8df211ee4722139c16133308b00515e4/papyrus_scripts-1.0.3-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2024-09-20T19:41:04,560 Found link https://files.pythonhosted.org/packages/c0/be/ef1fc8c69ba39ecf9d4a6d42ffcf25f07a7f8912fe1c15f1e77b40be8f90/papyrus_scripts-1.0.3.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.3 2024-09-20T19:41:04,561 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/7e/e4/88b6ad50b83e4845adb2ff52aeb8cfcfe5889546f64e73524d12b014f2cb/papyrus_scripts-2.0.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2024-09-20T19:41:04,561 Found link https://files.pythonhosted.org/packages/23/25/8dcbf7c4f30f10570ca5725953c1cf575520a085d4261646f77e65b113ea/papyrus_scripts-2.0.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.0.0 2024-09-20T19:41:04,562 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/18/ea/22077156d9a642d92bb910a325a2771ec1276a64a8180dd22d4dbcd48120/papyrus_scripts-2.0.0.post1-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2024-09-20T19:41:04,563 Found link https://files.pythonhosted.org/packages/fa/b5/1a7c04f6af8915d8e54aa79ce50fff0371564b71e24d1c01a8634e12403e/papyrus_scripts-2.0.0.post1.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.0.0.post1 2024-09-20T19:41:04,563 Fetching project page and analyzing links: https://www.piwheels.org/simple/papyrus-scripts/ 2024-09-20T19:41:04,564 Getting page https://www.piwheels.org/simple/papyrus-scripts/ 2024-09-20T19:41:04,565 Found index url https://www.piwheels.org/simple/ 2024-09-20T19:41:04,739 Fetched page https://www.piwheels.org/simple/papyrus-scripts/ as text/html 2024-09-20T19:41:04,742 Skipping link: No binaries permitted for papyrus-scripts: https://www.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.0.0-py3-none-any.whl#sha256=59b7c1af7bcffad2a4864853071d1d2023f12d66c2d94c77307da77d571736f3 (from https://www.piwheels.org/simple/papyrus-scripts/) 2024-09-20T19:41:04,743 Skipping link: No binaries permitted for papyrus-scripts: https://www.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.3-py3-none-any.whl#sha256=d8726fad87c54033c1ccfb24793cfe931514385e31f985decbd4db0359161f21 (from https://www.piwheels.org/simple/papyrus-scripts/) 2024-09-20T19:41:04,743 Skipping link: No binaries permitted for papyrus-scripts: https://www.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.2-py3-none-any.whl#sha256=0c5c255057debeeb39bc7754d5580f5017739a5511dfc5c8a0a4cea4381a216b (from https://www.piwheels.org/simple/papyrus-scripts/) 2024-09-20T19:41:04,744 Skipping link: No binaries permitted for papyrus-scripts: https://www.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.1-py3-none-any.whl#sha256=a9a05d11a4dab2af708d68a7d80f14bde89175c2655db1d624fecddf5e188e07 (from https://www.piwheels.org/simple/papyrus-scripts/) 2024-09-20T19:41:04,744 Skipping link: No binaries permitted for papyrus-scripts: https://www.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.0-py3-none-any.whl#sha256=0547595805abc574ec34f214d521dcf762c43e1c7da898f1bb95a2c6eda24460 (from https://www.piwheels.org/simple/papyrus-scripts/) 2024-09-20T19:41:04,745 Skipping link: not a file: https://www.piwheels.org/simple/papyrus-scripts/ 2024-09-20T19:41:04,745 Skipping link: not a file: https://pypi.org/simple/papyrus-scripts/ 2024-09-20T19:41:04,765 Given no hashes to check 1 links for project 'papyrus-scripts': discarding no candidates 2024-09-20T19:41:04,767 Collecting papyrus-scripts==2.0.0.post1 2024-09-20T19:41:04,769 Created temporary directory: /tmp/pip-unpack-4k7jjwuh 2024-09-20T19:41:04,979 Downloading papyrus_scripts-2.0.0.post1.tar.gz (79 kB) 2024-09-20T19:41:05,102 Added papyrus-scripts==2.0.0.post1 from https://files.pythonhosted.org/packages/fa/b5/1a7c04f6af8915d8e54aa79ce50fff0371564b71e24d1c01a8634e12403e/papyrus_scripts-2.0.0.post1.tar.gz to build tracker '/tmp/pip-build-tracker-58wv1nwk' 2024-09-20T19:41:05,105 Running setup.py (path:/tmp/pip-wheel-0p5fqewp/papyrus-scripts_283aca03cf574ab29877ebf0200d39e3/setup.py) egg_info for package papyrus-scripts 2024-09-20T19:41:05,106 Created temporary directory: /tmp/pip-pip-egg-info-lht3e84y 2024-09-20T19:41:05,106 Preparing metadata (setup.py): started 2024-09-20T19:41:05,108 Running command python setup.py egg_info 2024-09-20T19:41:06,344 running egg_info 2024-09-20T19:41:06,345 creating /tmp/pip-pip-egg-info-lht3e84y/papyrus_scripts.egg-info 2024-09-20T19:41:06,371 writing /tmp/pip-pip-egg-info-lht3e84y/papyrus_scripts.egg-info/PKG-INFO 2024-09-20T19:41:06,377 writing dependency_links to /tmp/pip-pip-egg-info-lht3e84y/papyrus_scripts.egg-info/dependency_links.txt 2024-09-20T19:41:06,379 writing entry points to /tmp/pip-pip-egg-info-lht3e84y/papyrus_scripts.egg-info/entry_points.txt 2024-09-20T19:41:06,381 writing requirements to /tmp/pip-pip-egg-info-lht3e84y/papyrus_scripts.egg-info/requires.txt 2024-09-20T19:41:06,382 writing top-level names to /tmp/pip-pip-egg-info-lht3e84y/papyrus_scripts.egg-info/top_level.txt 2024-09-20T19:41:06,384 writing manifest file '/tmp/pip-pip-egg-info-lht3e84y/papyrus_scripts.egg-info/SOURCES.txt' 2024-09-20T19:41:06,469 reading manifest file '/tmp/pip-pip-egg-info-lht3e84y/papyrus_scripts.egg-info/SOURCES.txt' 2024-09-20T19:41:06,471 adding license file 'LICENSE' 2024-09-20T19:41:06,473 writing manifest file '/tmp/pip-pip-egg-info-lht3e84y/papyrus_scripts.egg-info/SOURCES.txt' 2024-09-20T19:41:06,586 Preparing metadata (setup.py): finished with status 'done' 2024-09-20T19:41:06,590 Source in /tmp/pip-wheel-0p5fqewp/papyrus-scripts_283aca03cf574ab29877ebf0200d39e3 has version 2.0.0.post1, which satisfies requirement papyrus-scripts==2.0.0.post1 from https://files.pythonhosted.org/packages/fa/b5/1a7c04f6af8915d8e54aa79ce50fff0371564b71e24d1c01a8634e12403e/papyrus_scripts-2.0.0.post1.tar.gz 2024-09-20T19:41:06,591 Removed papyrus-scripts==2.0.0.post1 from https://files.pythonhosted.org/packages/fa/b5/1a7c04f6af8915d8e54aa79ce50fff0371564b71e24d1c01a8634e12403e/papyrus_scripts-2.0.0.post1.tar.gz from build tracker '/tmp/pip-build-tracker-58wv1nwk' 2024-09-20T19:41:06,599 Created temporary directory: /tmp/pip-unpack-opa2nky_ 2024-09-20T19:41:06,600 Created temporary directory: /tmp/pip-unpack-bc0g4taw 2024-09-20T19:41:06,601 Building wheels for collected packages: papyrus-scripts 2024-09-20T19:41:06,605 Created temporary directory: /tmp/pip-wheel-_x_n7n4f 2024-09-20T19:41:06,605 Building wheel for papyrus-scripts (setup.py): started 2024-09-20T19:41:06,607 Destination directory: /tmp/pip-wheel-_x_n7n4f 2024-09-20T19:41:06,607 Running command python setup.py bdist_wheel 2024-09-20T19:41:07,729 running bdist_wheel 2024-09-20T19:41:07,873 running build 2024-09-20T19:41:07,874 running build_py 2024-09-20T19:41:07,903 creating build 2024-09-20T19:41:07,904 creating build/lib 2024-09-20T19:41:07,905 creating build/lib/papyrus_scripts 2024-09-20T19:41:07,906 copying src/papyrus_scripts/oop.py -> build/lib/papyrus_scripts 2024-09-20T19:41:07,909 copying src/papyrus_scripts/cli.py -> build/lib/papyrus_scripts 2024-09-20T19:41:07,911 copying src/papyrus_scripts/__init__.py -> build/lib/papyrus_scripts 2024-09-20T19:41:07,913 copying src/papyrus_scripts/fingerprint.py -> build/lib/papyrus_scripts 2024-09-20T19:41:07,915 copying src/papyrus_scripts/preprocess.py -> build/lib/papyrus_scripts 2024-09-20T19:41:07,918 copying src/papyrus_scripts/modelling.py -> build/lib/papyrus_scripts 2024-09-20T19:41:07,921 copying src/papyrus_scripts/neuralnet.py -> build/lib/papyrus_scripts 2024-09-20T19:41:07,924 copying src/papyrus_scripts/__main__.py -> build/lib/papyrus_scripts 2024-09-20T19:41:07,925 copying src/papyrus_scripts/subsim_search.py -> build/lib/papyrus_scripts 2024-09-20T19:41:07,928 copying src/papyrus_scripts/download.py -> build/lib/papyrus_scripts 2024-09-20T19:41:07,931 copying src/papyrus_scripts/matchRCSB.py -> build/lib/papyrus_scripts 2024-09-20T19:41:07,933 copying src/papyrus_scripts/reader.py -> build/lib/papyrus_scripts 2024-09-20T19:41:07,936 creating build/lib/papyrus_scripts/utils 2024-09-20T19:41:07,937 copying src/papyrus_scripts/utils/__init__.py -> build/lib/papyrus_scripts/utils 2024-09-20T19:41:07,939 copying src/papyrus_scripts/utils/UniprotMatch.py -> build/lib/papyrus_scripts/utils 2024-09-20T19:41:07,941 copying src/papyrus_scripts/utils/IO.py -> build/lib/papyrus_scripts/utils 2024-09-20T19:41:07,944 copying src/papyrus_scripts/utils/mol_reader.py -> build/lib/papyrus_scripts/utils 2024-09-20T19:41:07,946 running egg_info 2024-09-20T19:41:07,972 writing src/papyrus_scripts.egg-info/PKG-INFO 2024-09-20T19:41:07,977 writing dependency_links to src/papyrus_scripts.egg-info/dependency_links.txt 2024-09-20T19:41:07,979 writing entry points to src/papyrus_scripts.egg-info/entry_points.txt 2024-09-20T19:41:07,981 writing requirements to src/papyrus_scripts.egg-info/requires.txt 2024-09-20T19:41:07,982 writing top-level names to src/papyrus_scripts.egg-info/top_level.txt 2024-09-20T19:41:08,015 reading manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt' 2024-09-20T19:41:08,019 adding license file 'LICENSE' 2024-09-20T19:41:08,021 writing manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt' 2024-09-20T19:41:08,025 copying src/papyrus_scripts/utils/aliases.json -> build/lib/papyrus_scripts/utils 2024-09-20T19:41:08,027 copying src/papyrus_scripts/utils/links.json -> build/lib/papyrus_scripts/utils 2024-09-20T19:41:08,057 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-09-20T19:41:08,057 !! 2024-09-20T19:41:08,058 ******************************************************************************** 2024-09-20T19:41:08,059 Please avoid running ``setup.py`` directly. 2024-09-20T19:41:08,059 Instead, use pypa/build, pypa/installer or other 2024-09-20T19:41:08,060 standards-based tools. 2024-09-20T19:41:08,061 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-09-20T19:41:08,061 ******************************************************************************** 2024-09-20T19:41:08,062 !! 2024-09-20T19:41:08,063 self.initialize_options() 2024-09-20T19:41:08,083 installing to build/bdist.linux-armv7l/wheel 2024-09-20T19:41:08,084 running install 2024-09-20T19:41:08,108 running install_lib 2024-09-20T19:41:08,134 creating build/bdist.linux-armv7l 2024-09-20T19:41:08,135 creating build/bdist.linux-armv7l/wheel 2024-09-20T19:41:08,136 creating build/bdist.linux-armv7l/wheel/papyrus_scripts 2024-09-20T19:41:08,137 creating build/bdist.linux-armv7l/wheel/papyrus_scripts/utils 2024-09-20T19:41:08,138 copying build/lib/papyrus_scripts/utils/links.json -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils 2024-09-20T19:41:08,141 copying build/lib/papyrus_scripts/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils 2024-09-20T19:41:08,142 copying build/lib/papyrus_scripts/utils/UniprotMatch.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils 2024-09-20T19:41:08,145 copying build/lib/papyrus_scripts/utils/IO.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils 2024-09-20T19:41:08,147 copying build/lib/papyrus_scripts/utils/mol_reader.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils 2024-09-20T19:41:08,149 copying build/lib/papyrus_scripts/utils/aliases.json -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils 2024-09-20T19:41:08,151 copying build/lib/papyrus_scripts/oop.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2024-09-20T19:41:08,154 copying build/lib/papyrus_scripts/cli.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2024-09-20T19:41:08,156 copying build/lib/papyrus_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2024-09-20T19:41:08,158 copying build/lib/papyrus_scripts/fingerprint.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2024-09-20T19:41:08,160 copying build/lib/papyrus_scripts/preprocess.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2024-09-20T19:41:08,163 copying build/lib/papyrus_scripts/modelling.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2024-09-20T19:41:08,167 copying build/lib/papyrus_scripts/neuralnet.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2024-09-20T19:41:08,169 copying build/lib/papyrus_scripts/__main__.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2024-09-20T19:41:08,171 copying build/lib/papyrus_scripts/subsim_search.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2024-09-20T19:41:08,174 copying build/lib/papyrus_scripts/download.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2024-09-20T19:41:08,177 copying build/lib/papyrus_scripts/matchRCSB.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2024-09-20T19:41:08,179 copying build/lib/papyrus_scripts/reader.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2024-09-20T19:41:08,181 running install_egg_info 2024-09-20T19:41:08,213 Copying src/papyrus_scripts.egg-info to build/bdist.linux-armv7l/wheel/./papyrus_scripts-2.0.0.post1-py3.11.egg-info 2024-09-20T19:41:08,224 running install_scripts 2024-09-20T19:41:08,243 creating build/bdist.linux-armv7l/wheel/papyrus_scripts-2.0.0.post1.dist-info/WHEEL 2024-09-20T19:41:08,246 creating '/tmp/pip-wheel-_x_n7n4f/papyrus_scripts-2.0.0.post1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-09-20T19:41:08,248 adding 'papyrus_scripts/__init__.py' 2024-09-20T19:41:08,249 adding 'papyrus_scripts/__main__.py' 2024-09-20T19:41:08,252 adding 'papyrus_scripts/cli.py' 2024-09-20T19:41:08,254 adding 'papyrus_scripts/download.py' 2024-09-20T19:41:08,256 adding 'papyrus_scripts/fingerprint.py' 2024-09-20T19:41:08,258 adding 'papyrus_scripts/matchRCSB.py' 2024-09-20T19:41:08,263 adding 'papyrus_scripts/modelling.py' 2024-09-20T19:41:08,266 adding 'papyrus_scripts/neuralnet.py' 2024-09-20T19:41:08,268 adding 'papyrus_scripts/oop.py' 2024-09-20T19:41:08,272 adding 'papyrus_scripts/preprocess.py' 2024-09-20T19:41:08,275 adding 'papyrus_scripts/reader.py' 2024-09-20T19:41:08,280 adding 'papyrus_scripts/subsim_search.py' 2024-09-20T19:41:08,283 adding 'papyrus_scripts/utils/IO.py' 2024-09-20T19:41:08,285 adding 'papyrus_scripts/utils/UniprotMatch.py' 2024-09-20T19:41:08,286 adding 'papyrus_scripts/utils/__init__.py' 2024-09-20T19:41:08,287 adding 'papyrus_scripts/utils/aliases.json' 2024-09-20T19:41:08,289 adding 'papyrus_scripts/utils/links.json' 2024-09-20T19:41:08,291 adding 'papyrus_scripts/utils/mol_reader.py' 2024-09-20T19:41:08,293 adding 'papyrus_scripts-2.0.0.post1.dist-info/LICENSE' 2024-09-20T19:41:08,295 adding 'papyrus_scripts-2.0.0.post1.dist-info/METADATA' 2024-09-20T19:41:08,296 adding 'papyrus_scripts-2.0.0.post1.dist-info/WHEEL' 2024-09-20T19:41:08,297 adding 'papyrus_scripts-2.0.0.post1.dist-info/entry_points.txt' 2024-09-20T19:41:08,298 adding 'papyrus_scripts-2.0.0.post1.dist-info/top_level.txt' 2024-09-20T19:41:08,299 adding 'papyrus_scripts-2.0.0.post1.dist-info/RECORD' 2024-09-20T19:41:08,301 removing build/bdist.linux-armv7l/wheel 2024-09-20T19:41:08,421 Building wheel for papyrus-scripts (setup.py): finished with status 'done' 2024-09-20T19:41:08,425 Created wheel for papyrus-scripts: filename=papyrus_scripts-2.0.0.post1-py3-none-any.whl size=79290 sha256=8c3d99b9e12fddc57fc9a8ae2fa2a6cb7ff056ea17e04f5f40498bc033bad65b 2024-09-20T19:41:08,426 Stored in directory: /tmp/pip-ephem-wheel-cache-fzr9vv6t/wheels/c1/aa/4f/4ae577036f692bcf8d8bb65030fc57a3ff9815057543c6bfc6 2024-09-20T19:41:08,439 Successfully built papyrus-scripts 2024-09-20T19:41:08,445 Removed build tracker: '/tmp/pip-build-tracker-58wv1nwk'