2024-09-23T17:44:39,193 Created temporary directory: /tmp/pip-build-tracker-qo8myak9
2024-09-23T17:44:39,195 Initialized build tracking at /tmp/pip-build-tracker-qo8myak9
2024-09-23T17:44:39,195 Created build tracker: /tmp/pip-build-tracker-qo8myak9
2024-09-23T17:44:39,195 Entered build tracker: /tmp/pip-build-tracker-qo8myak9
2024-09-23T17:44:39,196 Created temporary directory: /tmp/pip-wheel-kmn8s_xs
2024-09-23T17:44:39,200 Created temporary directory: /tmp/pip-ephem-wheel-cache-ctzlnwt8
2024-09-23T17:44:39,243 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-09-23T17:44:39,246 2 location(s) to search for versions of pub-worm:
2024-09-23T17:44:39,246 * https://pypi.org/simple/pub-worm/
2024-09-23T17:44:39,246 * https://www.piwheels.org/simple/pub-worm/
2024-09-23T17:44:39,246 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/
2024-09-23T17:44:39,247 Getting page https://pypi.org/simple/pub-worm/
2024-09-23T17:44:39,249 Found index url https://pypi.org/simple/
2024-09-23T17:44:39,467 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json
2024-09-23T17:44:39,471   Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1
2024-09-23T17:44:39,472   Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1
2024-09-23T17:44:39,472   Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2
2024-09-23T17:44:39,473   Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3
2024-09-23T17:44:39,474   Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4
2024-09-23T17:44:39,474   Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5
2024-09-23T17:44:39,475   Found link https://files.pythonhosted.org/packages/80/a0/1ce94f51ef16d83a09dea4f1985b068452c7880801597bd3eb82efd056fc/pub_worm-0.1.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.6
2024-09-23T17:44:39,476   Found link https://files.pythonhosted.org/packages/a3/21/a1cd9d1377b513ca7bb426346eb849aa4c84f3b3a3e1d80c0c7b05585d92/pub_worm-0.1.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.7
2024-09-23T17:44:39,476   Found link https://files.pythonhosted.org/packages/8f/fc/a0c2da18b286317e2843459c01336317cfeaa46efe28b278201968d1176d/pub_worm-0.1.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.8
2024-09-23T17:44:39,477   Found link https://files.pythonhosted.org/packages/05/8b/338f3714f1fa9c96e6eb4161453ee1686e7e852c3e568f53de43d9181cba/pub_worm-0.1.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.9
2024-09-23T17:44:39,478   Found link https://files.pythonhosted.org/packages/97/77/c5713bb989282f6cc978673a6444be453c991049862f200a583aae8061de/pub_worm-0.2.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.0
2024-09-23T17:44:39,478   Found link https://files.pythonhosted.org/packages/ba/54/2d9a593a5d99fea472983a809a8764698e89d7e9336eb4dece805bb685d1/pub_worm-0.2.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.1
2024-09-23T17:44:39,479   Found link https://files.pythonhosted.org/packages/da/24/bc0ded99393b36c2a10169df8df556b1ffa4efbcb6cc88c6d0d1245a4490/pub_worm-0.2.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.2
2024-09-23T17:44:39,479   Found link https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.3
2024-09-23T17:44:39,480   Found link https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.4
2024-09-23T17:44:39,481   Found link https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.5
2024-09-23T17:44:39,482   Found link https://files.pythonhosted.org/packages/7d/07/f0b969d2ecfe9daa5682c4565ed168d28aa1e45dff044a102bdb549c2cba/pub_worm-0.2.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.6
2024-09-23T17:44:39,482   Found link https://files.pythonhosted.org/packages/f5/e4/6c2a317ea14ff7acce17ad7087f4937e860cb48d28976812e19191e544e5/pub_worm-0.2.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.7
2024-09-23T17:44:39,483 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/
2024-09-23T17:44:39,483 Getting page https://www.piwheels.org/simple/pub-worm/
2024-09-23T17:44:39,485 Found index url https://www.piwheels.org/simple/
2024-09-23T17:44:39,666 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html
2024-09-23T17:44:39,671   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.6-py3-none-any.whl#sha256=79f23813bcf27f437dd33b20d97761a1124ac1aa5aa80ff78557d4a6d78d0ff4 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,672   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.5-py3-none-any.whl#sha256=6372364213ad9038155851d20d7145b7fa44b8664abf2d718da4c2377fc3b56e (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,673   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.4-py3-none-any.whl#sha256=d426fb6e260eb1588f75b25281a6d726d740a9c88f34e8ffd0f0bbcd1e98acbc (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,673   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.3-py3-none-any.whl#sha256=08bbce548fac3ce388fa51fdcbf0a4b59a27180b5871a37d0bf5ced9c84e903a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,673   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.2-py3-none-any.whl#sha256=1f5f09a3598f66e5a30431d4c93cd6b581049d7829a791820ecb783ddad91c19 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,674   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.1-py3-none-any.whl#sha256=2cd541418ccbf9158ab7e18b187c7d7bc297928fbb5f4817f84f67552fd20c2a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,675   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.0-py3-none-any.whl#sha256=0fe4aa97fb602755d99717699395e7014f676d4ee4572930652a00f5b0407400 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,675   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.9-py3-none-any.whl#sha256=d36153a6672446b80a3ad4a128123f60f80f8f1444122936363fa80165d19f7a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,676   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.8-py3-none-any.whl#sha256=ad3c0117baeaa8c04f86149fa0dd71f6ea65d60213da6d6b570d0157572afe2c (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,676   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.7-py3-none-any.whl#sha256=5b88eaacc4effbdf9cc173c4732a2ac60eac0a420ccac19ba626a2be72b7f12a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,677   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.6-py3-none-any.whl#sha256=b18fb87705630077e0c3647f52c14b61e3b0ced91b1628a96bd5406c384f38ea (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,678   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.5-py3-none-any.whl#sha256=194f3e97c1023b9ba1e3ada69ff1de5c0883d9bf2e6c11d2b6173cf86f7d23ec (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,678   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.4-py3-none-any.whl#sha256=84de546e9b8e73c3cdbccb497a05d28c60537eda48d1b1fdb879be94e3fe3f27 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,679   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.3-py3-none-any.whl#sha256=c93d251f88dea0862a7a5878ea9d242ca2a3dfc38922c876268f91def0e576c1 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,679   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.2-py3-none-any.whl#sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,680   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,680   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-23T17:44:39,681 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/
2024-09-23T17:44:39,682 Skipping link: not a file: https://pypi.org/simple/pub-worm/
2024-09-23T17:44:39,701 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates
2024-09-23T17:44:39,703 Collecting pub-worm==0.2.7
2024-09-23T17:44:39,705   Created temporary directory: /tmp/pip-unpack-f9n_bdgc
2024-09-23T17:44:39,925   Downloading pub_worm-0.2.7.tar.gz (393 kB)
2024-09-23T17:44:40,141   Added pub-worm==0.2.7 from https://files.pythonhosted.org/packages/f5/e4/6c2a317ea14ff7acce17ad7087f4937e860cb48d28976812e19191e544e5/pub_worm-0.2.7.tar.gz to build tracker '/tmp/pip-build-tracker-qo8myak9'
2024-09-23T17:44:40,143   Running setup.py (path:/tmp/pip-wheel-kmn8s_xs/pub-worm_3ecf4e6d381c47a3b624afbb59d2c087/setup.py) egg_info for package pub-worm
2024-09-23T17:44:40,144   Created temporary directory: /tmp/pip-pip-egg-info-u7cetfe_
2024-09-23T17:44:40,145   Preparing metadata (setup.py): started
2024-09-23T17:44:40,146   Running command python setup.py egg_info
2024-09-23T17:44:41,215   running egg_info
2024-09-23T17:44:41,217   creating /tmp/pip-pip-egg-info-u7cetfe_/pub_worm.egg-info
2024-09-23T17:44:41,244   writing /tmp/pip-pip-egg-info-u7cetfe_/pub_worm.egg-info/PKG-INFO
2024-09-23T17:44:41,248   writing dependency_links to /tmp/pip-pip-egg-info-u7cetfe_/pub_worm.egg-info/dependency_links.txt
2024-09-23T17:44:41,250   writing requirements to /tmp/pip-pip-egg-info-u7cetfe_/pub_worm.egg-info/requires.txt
2024-09-23T17:44:41,251   writing top-level names to /tmp/pip-pip-egg-info-u7cetfe_/pub_worm.egg-info/top_level.txt
2024-09-23T17:44:41,252   writing manifest file '/tmp/pip-pip-egg-info-u7cetfe_/pub_worm.egg-info/SOURCES.txt'
2024-09-23T17:44:41,349   reading manifest file '/tmp/pip-pip-egg-info-u7cetfe_/pub_worm.egg-info/SOURCES.txt'
2024-09-23T17:44:41,350   reading manifest template 'MANIFEST.in'
2024-09-23T17:44:41,352   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-09-23T17:44:41,353   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-09-23T17:44:41,354   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-09-23T17:44:41,356   writing manifest file '/tmp/pip-pip-egg-info-u7cetfe_/pub_worm.egg-info/SOURCES.txt'
2024-09-23T17:44:41,469   Preparing metadata (setup.py): finished with status 'done'
2024-09-23T17:44:41,473   Source in /tmp/pip-wheel-kmn8s_xs/pub-worm_3ecf4e6d381c47a3b624afbb59d2c087 has version 0.2.7, which satisfies requirement pub-worm==0.2.7 from https://files.pythonhosted.org/packages/f5/e4/6c2a317ea14ff7acce17ad7087f4937e860cb48d28976812e19191e544e5/pub_worm-0.2.7.tar.gz
2024-09-23T17:44:41,474   Removed pub-worm==0.2.7 from https://files.pythonhosted.org/packages/f5/e4/6c2a317ea14ff7acce17ad7087f4937e860cb48d28976812e19191e544e5/pub_worm-0.2.7.tar.gz from build tracker '/tmp/pip-build-tracker-qo8myak9'
2024-09-23T17:44:41,479 Created temporary directory: /tmp/pip-unpack-1s1hzqrp
2024-09-23T17:44:41,480 Created temporary directory: /tmp/pip-unpack-5myj9uh_
2024-09-23T17:44:41,480 Building wheels for collected packages: pub-worm
2024-09-23T17:44:41,484   Created temporary directory: /tmp/pip-wheel-8_vkg7g6
2024-09-23T17:44:41,484   Building wheel for pub-worm (setup.py): started
2024-09-23T17:44:41,485   Destination directory: /tmp/pip-wheel-8_vkg7g6
2024-09-23T17:44:41,486   Running command python setup.py bdist_wheel
2024-09-23T17:44:42,506   running bdist_wheel
2024-09-23T17:44:42,636   running build
2024-09-23T17:44:42,637   running build_py
2024-09-23T17:44:42,666   creating build/lib/tests
2024-09-23T17:44:42,668   copying tests/__init__.py -> build/lib/tests
2024-09-23T17:44:42,670   creating build/lib/pub_worm
2024-09-23T17:44:42,671   copying pub_worm/__init__.py -> build/lib/pub_worm
2024-09-23T17:44:42,673   creating build/lib/tests/ncbi
2024-09-23T17:44:42,674   copying tests/ncbi/__init__.py -> build/lib/tests/ncbi
2024-09-23T17:44:42,676   copying tests/ncbi/test_entreze_api.py -> build/lib/tests/ncbi
2024-09-23T17:44:42,679   creating build/lib/tests/orcid
2024-09-23T17:44:42,680   copying tests/orcid/__init__.py -> build/lib/tests/orcid
2024-09-23T17:44:42,681   copying tests/orcid/test_orcid_api.py -> build/lib/tests/orcid
2024-09-23T17:44:42,683   creating build/lib/tests/wormbase
2024-09-23T17:44:42,684   copying tests/wormbase/__init__.py -> build/lib/tests/wormbase
2024-09-23T17:44:42,687   copying tests/wormbase/test_wormbase_api.py -> build/lib/tests/wormbase
2024-09-23T17:44:42,689   creating build/lib/tests/impact_factor
2024-09-23T17:44:42,690   copying tests/impact_factor/__init__.py -> build/lib/tests/impact_factor
2024-09-23T17:44:42,691   copying tests/impact_factor/test_get_impact_factor.py -> build/lib/tests/impact_factor
2024-09-23T17:44:42,694   creating build/lib/pub_worm/ncbi
2024-09-23T17:44:42,695   copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi
2024-09-23T17:44:42,697   copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi
2024-09-23T17:44:42,700   creating build/lib/pub_worm/orcid
2024-09-23T17:44:42,701   copying pub_worm/orcid/__init__.py -> build/lib/pub_worm/orcid
2024-09-23T17:44:42,703   copying pub_worm/orcid/orcid_api.py -> build/lib/pub_worm/orcid
2024-09-23T17:44:42,706   creating build/lib/pub_worm/wormbase
2024-09-23T17:44:42,707   copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase
2024-09-23T17:44:42,709   copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase
2024-09-23T17:44:42,710   copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase
2024-09-23T17:44:42,713   creating build/lib/pub_worm/impact_factor
2024-09-23T17:44:42,714   copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor
2024-09-23T17:44:42,716   copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor
2024-09-23T17:44:42,718   creating build/lib/pub_worm/ensembl
2024-09-23T17:44:42,722   copying pub_worm/ensembl/__init__.py -> build/lib/pub_worm/ensembl
2024-09-23T17:44:42,724   copying pub_worm/ensembl/ensembl_api.py -> build/lib/pub_worm/ensembl
2024-09-23T17:44:42,726   running egg_info
2024-09-23T17:44:42,753   writing pub_worm.egg-info/PKG-INFO
2024-09-23T17:44:42,756   writing dependency_links to pub_worm.egg-info/dependency_links.txt
2024-09-23T17:44:42,757   writing requirements to pub_worm.egg-info/requires.txt
2024-09-23T17:44:42,758   writing top-level names to pub_worm.egg-info/top_level.txt
2024-09-23T17:44:42,795   reading manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-09-23T17:44:42,801   reading manifest template 'MANIFEST.in'
2024-09-23T17:44:42,802   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-09-23T17:44:42,803   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-09-23T17:44:42,803   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-09-23T17:44:42,807   writing manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-09-23T17:44:42,809   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration.
2024-09-23T17:44:42,809   !!

2024-09-23T17:44:42,810           ********************************************************************************
2024-09-23T17:44:42,811           ############################
2024-09-23T17:44:42,811           # Package would be ignored #
2024-09-23T17:44:42,812           ############################
2024-09-23T17:44:42,812           Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1],
2024-09-23T17:44:42,813           but it is absent from setuptools' `packages` configuration.

2024-09-23T17:44:42,814           This leads to an ambiguous overall configuration. If you want to distribute this
2024-09-23T17:44:42,815           package, please make sure that 'pub_worm.impact_factor.data' is explicitly added
2024-09-23T17:44:42,815           to the `packages` configuration field.

2024-09-23T17:44:42,816           Alternatively, you can also rely on setuptools' discovery methods
2024-09-23T17:44:42,817           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-09-23T17:44:42,817           instead of `find_packages(...)`/`find:`).

2024-09-23T17:44:42,818           You can read more about "package discovery" on setuptools documentation page:

2024-09-23T17:44:42,819           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-09-23T17:44:42,820           If you don't want 'pub_worm.impact_factor.data' to be distributed and are
2024-09-23T17:44:42,821           already explicitly excluding 'pub_worm.impact_factor.data' via
2024-09-23T17:44:42,821           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-09-23T17:44:42,822           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-09-23T17:44:42,822           combination with a more fine grained `package-data` configuration.

2024-09-23T17:44:42,823           You can read more about "package data files" on setuptools documentation page:

2024-09-23T17:44:42,824           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-09-23T17:44:42,826           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-09-23T17:44:42,826                 even if it does not contain any `.py` files.
2024-09-23T17:44:42,827                 On the other hand, currently there is no concept of package data
2024-09-23T17:44:42,827                 directory, all directories are treated like packages.
2024-09-23T17:44:42,827           ********************************************************************************

2024-09-23T17:44:42,828   !!
2024-09-23T17:44:42,829     check.warn(importable)
2024-09-23T17:44:42,829   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration.
2024-09-23T17:44:42,830   !!

2024-09-23T17:44:42,831           ********************************************************************************
2024-09-23T17:44:42,832           ############################
2024-09-23T17:44:42,832           # Package would be ignored #
2024-09-23T17:44:42,833           ############################
2024-09-23T17:44:42,834           Python recognizes 'pub_worm.wormbase.data' as an importable package[^1],
2024-09-23T17:44:42,834           but it is absent from setuptools' `packages` configuration.

2024-09-23T17:44:42,835           This leads to an ambiguous overall configuration. If you want to distribute this
2024-09-23T17:44:42,835           package, please make sure that 'pub_worm.wormbase.data' is explicitly added
2024-09-23T17:44:42,836           to the `packages` configuration field.

2024-09-23T17:44:42,837           Alternatively, you can also rely on setuptools' discovery methods
2024-09-23T17:44:42,837           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-09-23T17:44:42,837           instead of `find_packages(...)`/`find:`).

2024-09-23T17:44:42,846           You can read more about "package discovery" on setuptools documentation page:

2024-09-23T17:44:42,855           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-09-23T17:44:42,856           If you don't want 'pub_worm.wormbase.data' to be distributed and are
2024-09-23T17:44:42,856           already explicitly excluding 'pub_worm.wormbase.data' via
2024-09-23T17:44:42,857           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-09-23T17:44:42,857           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-09-23T17:44:42,858           combination with a more fine grained `package-data` configuration.

2024-09-23T17:44:42,859           You can read more about "package data files" on setuptools documentation page:

2024-09-23T17:44:42,860           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-09-23T17:44:42,861           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-09-23T17:44:42,862                 even if it does not contain any `.py` files.
2024-09-23T17:44:42,862                 On the other hand, currently there is no concept of package data
2024-09-23T17:44:42,863                 directory, all directories are treated like packages.
2024-09-23T17:44:42,863           ********************************************************************************

2024-09-23T17:44:42,864   !!
2024-09-23T17:44:42,865     check.warn(importable)
2024-09-23T17:44:42,865   creating build/lib/pub_worm/wormbase/data
2024-09-23T17:44:42,866   copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data
2024-09-23T17:44:42,866   copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data
2024-09-23T17:44:42,867   copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data
2024-09-23T17:44:42,867   creating build/lib/pub_worm/impact_factor/data
2024-09-23T17:44:42,868   copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data
2024-09-23T17:44:42,891   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-09-23T17:44:42,891   !!

2024-09-23T17:44:42,892           ********************************************************************************
2024-09-23T17:44:42,893           Please avoid running ``setup.py`` directly.
2024-09-23T17:44:42,894           Instead, use pypa/build, pypa/installer or other
2024-09-23T17:44:42,894           standards-based tools.

2024-09-23T17:44:42,895           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-09-23T17:44:42,896           ********************************************************************************

2024-09-23T17:44:42,897   !!
2024-09-23T17:44:42,898     self.initialize_options()
2024-09-23T17:44:42,920   installing to build/bdist.linux-armv7l/wheel
2024-09-23T17:44:42,920   running install
2024-09-23T17:44:42,945   running install_lib
2024-09-23T17:44:42,972   creating build/bdist.linux-armv7l/wheel
2024-09-23T17:44:42,974   creating build/bdist.linux-armv7l/wheel/tests
2024-09-23T17:44:42,976   creating build/bdist.linux-armv7l/wheel/tests/ncbi
2024-09-23T17:44:42,978   copying build/lib/tests/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi
2024-09-23T17:44:42,979   copying build/lib/tests/ncbi/test_entreze_api.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi
2024-09-23T17:44:42,981   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests
2024-09-23T17:44:42,983   creating build/bdist.linux-armv7l/wheel/tests/orcid
2024-09-23T17:44:42,984   copying build/lib/tests/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/orcid
2024-09-23T17:44:42,986   copying build/lib/tests/orcid/test_orcid_api.py -> build/bdist.linux-armv7l/wheel/./tests/orcid
2024-09-23T17:44:42,988   creating build/bdist.linux-armv7l/wheel/tests/wormbase
2024-09-23T17:44:42,990   copying build/lib/tests/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase
2024-09-23T17:44:42,991   copying build/lib/tests/wormbase/test_wormbase_api.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase
2024-09-23T17:44:42,994   creating build/bdist.linux-armv7l/wheel/tests/impact_factor
2024-09-23T17:44:42,995   copying build/lib/tests/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor
2024-09-23T17:44:42,996   copying build/lib/tests/impact_factor/test_get_impact_factor.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor
2024-09-23T17:44:42,998   creating build/bdist.linux-armv7l/wheel/pub_worm
2024-09-23T17:44:43,000   creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-09-23T17:44:43,001   copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi
2024-09-23T17:44:43,003   copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi
2024-09-23T17:44:43,006   copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm
2024-09-23T17:44:43,008   creating build/bdist.linux-armv7l/wheel/pub_worm/orcid
2024-09-23T17:44:43,009   copying build/lib/pub_worm/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid
2024-09-23T17:44:43,010   copying build/lib/pub_worm/orcid/orcid_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid
2024-09-23T17:44:43,013   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-09-23T17:44:43,014   copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-09-23T17:44:43,016   copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-09-23T17:44:43,018   copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-09-23T17:44:43,021   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-09-23T17:44:43,022   copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-09-23T17:44:43,024   copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-09-23T17:44:43,026   copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-09-23T17:44:43,028   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor
2024-09-23T17:44:43,029   copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor
2024-09-23T17:44:43,031   copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor
2024-09-23T17:44:43,034   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data
2024-09-23T17:44:43,035   copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor/data
2024-09-23T17:44:43,065   creating build/bdist.linux-armv7l/wheel/pub_worm/ensembl
2024-09-23T17:44:43,067   copying build/lib/pub_worm/ensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl
2024-09-23T17:44:43,069   copying build/lib/pub_worm/ensembl/ensembl_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl
2024-09-23T17:44:43,071   running install_egg_info
2024-09-23T17:44:43,104   Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/./pub_worm-0.2.7-py3.11.egg-info
2024-09-23T17:44:43,116   running install_scripts
2024-09-23T17:44:43,127   creating build/bdist.linux-armv7l/wheel/pub_worm-0.2.7.dist-info/WHEEL
2024-09-23T17:44:43,130   creating '/tmp/pip-wheel-8_vkg7g6/pub_worm-0.2.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-09-23T17:44:43,132   adding 'pub_worm/__init__.py'
2024-09-23T17:44:43,134   adding 'pub_worm/ensembl/__init__.py'
2024-09-23T17:44:43,136   adding 'pub_worm/ensembl/ensembl_api.py'
2024-09-23T17:44:43,138   adding 'pub_worm/impact_factor/__init__.py'
2024-09-23T17:44:43,140   adding 'pub_worm/impact_factor/impact_factor_lookup.py'
2024-09-23T17:44:43,305   adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv'
2024-09-23T17:44:43,316   adding 'pub_worm/ncbi/__init__.py'
2024-09-23T17:44:43,319   adding 'pub_worm/ncbi/entreze_api.py'
2024-09-23T17:44:43,321   adding 'pub_worm/orcid/__init__.py'
2024-09-23T17:44:43,323   adding 'pub_worm/orcid/orcid_api.py'
2024-09-23T17:44:43,326   adding 'pub_worm/wormbase/__init__.py'
2024-09-23T17:44:43,327   adding 'pub_worm/wormbase/to_csv_helpers.py'
2024-09-23T17:44:43,329   adding 'pub_worm/wormbase/wormbase_api.py'
2024-09-23T17:44:43,332   adding 'pub_worm/wormbase/data/wormbase_field_gene.json'
2024-09-23T17:44:43,333   adding 'pub_worm/wormbase/data/wormbase_field_paper.json'
2024-09-23T17:44:43,335   adding 'pub_worm/wormbase/data/wormbase_widget_gene.json'
2024-09-23T17:44:43,337   adding 'tests/__init__.py'
2024-09-23T17:44:43,339   adding 'tests/impact_factor/__init__.py'
2024-09-23T17:44:43,341   adding 'tests/impact_factor/test_get_impact_factor.py'
2024-09-23T17:44:43,342   adding 'tests/ncbi/__init__.py'
2024-09-23T17:44:43,344   adding 'tests/ncbi/test_entreze_api.py'
2024-09-23T17:44:43,345   adding 'tests/orcid/__init__.py'
2024-09-23T17:44:43,347   adding 'tests/orcid/test_orcid_api.py'
2024-09-23T17:44:43,348   adding 'tests/wormbase/__init__.py'
2024-09-23T17:44:43,350   adding 'tests/wormbase/test_wormbase_api.py'
2024-09-23T17:44:43,351   adding 'pub_worm-0.2.7.dist-info/METADATA'
2024-09-23T17:44:43,352   adding 'pub_worm-0.2.7.dist-info/WHEEL'
2024-09-23T17:44:43,353   adding 'pub_worm-0.2.7.dist-info/top_level.txt'
2024-09-23T17:44:43,354   adding 'pub_worm-0.2.7.dist-info/RECORD'
2024-09-23T17:44:43,359   removing build/bdist.linux-armv7l/wheel
2024-09-23T17:44:43,487   Building wheel for pub-worm (setup.py): finished with status 'done'
2024-09-23T17:44:43,494   Created wheel for pub-worm: filename=pub_worm-0.2.7-py3-none-any.whl size=398898 sha256=17c8216479e7796ddea333f1eccbc02c3362a728668da69bbf9e12b0239a9c8f
2024-09-23T17:44:43,495   Stored in directory: /tmp/pip-ephem-wheel-cache-ctzlnwt8/wheels/7c/8b/e0/86d22c66ca31238873b8a2cba2517cf94819f68d9a8d72d80a
2024-09-23T17:44:43,505 Successfully built pub-worm
2024-09-23T17:44:43,519 Removed build tracker: '/tmp/pip-build-tracker-qo8myak9'