2024-09-25T22:14:36,639 Created temporary directory: /tmp/pip-build-tracker-faxtb554
2024-09-25T22:14:36,640 Initialized build tracking at /tmp/pip-build-tracker-faxtb554
2024-09-25T22:14:36,641 Created build tracker: /tmp/pip-build-tracker-faxtb554
2024-09-25T22:14:36,641 Entered build tracker: /tmp/pip-build-tracker-faxtb554
2024-09-25T22:14:36,642 Created temporary directory: /tmp/pip-wheel-m57tupdh
2024-09-25T22:14:36,646 Created temporary directory: /tmp/pip-ephem-wheel-cache-ioyrkmgv
2024-09-25T22:14:36,691 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-09-25T22:14:36,694 2 location(s) to search for versions of pub-worm:
2024-09-25T22:14:36,694 * https://pypi.org/simple/pub-worm/
2024-09-25T22:14:36,694 * https://www.piwheels.org/simple/pub-worm/
2024-09-25T22:14:36,695 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/
2024-09-25T22:14:36,695 Getting page https://pypi.org/simple/pub-worm/
2024-09-25T22:14:36,697 Found index url https://pypi.org/simple/
2024-09-25T22:14:37,033 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json
2024-09-25T22:14:37,037   Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1
2024-09-25T22:14:37,038   Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1
2024-09-25T22:14:37,039   Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2
2024-09-25T22:14:37,039   Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3
2024-09-25T22:14:37,040   Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4
2024-09-25T22:14:37,041   Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5
2024-09-25T22:14:37,041   Found link https://files.pythonhosted.org/packages/80/a0/1ce94f51ef16d83a09dea4f1985b068452c7880801597bd3eb82efd056fc/pub_worm-0.1.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.6
2024-09-25T22:14:37,042   Found link https://files.pythonhosted.org/packages/a3/21/a1cd9d1377b513ca7bb426346eb849aa4c84f3b3a3e1d80c0c7b05585d92/pub_worm-0.1.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.7
2024-09-25T22:14:37,043   Found link https://files.pythonhosted.org/packages/8f/fc/a0c2da18b286317e2843459c01336317cfeaa46efe28b278201968d1176d/pub_worm-0.1.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.8
2024-09-25T22:14:37,044   Found link https://files.pythonhosted.org/packages/05/8b/338f3714f1fa9c96e6eb4161453ee1686e7e852c3e568f53de43d9181cba/pub_worm-0.1.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.9
2024-09-25T22:14:37,045   Found link https://files.pythonhosted.org/packages/97/77/c5713bb989282f6cc978673a6444be453c991049862f200a583aae8061de/pub_worm-0.2.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.0
2024-09-25T22:14:37,046   Found link https://files.pythonhosted.org/packages/ba/54/2d9a593a5d99fea472983a809a8764698e89d7e9336eb4dece805bb685d1/pub_worm-0.2.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.1
2024-09-25T22:14:37,046   Found link https://files.pythonhosted.org/packages/da/24/bc0ded99393b36c2a10169df8df556b1ffa4efbcb6cc88c6d0d1245a4490/pub_worm-0.2.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.2
2024-09-25T22:14:37,047   Found link https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.3
2024-09-25T22:14:37,048   Found link https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.4
2024-09-25T22:14:37,049   Found link https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.5
2024-09-25T22:14:37,050   Found link https://files.pythonhosted.org/packages/7d/07/f0b969d2ecfe9daa5682c4565ed168d28aa1e45dff044a102bdb549c2cba/pub_worm-0.2.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.6
2024-09-25T22:14:37,051   Found link https://files.pythonhosted.org/packages/f5/e4/6c2a317ea14ff7acce17ad7087f4937e860cb48d28976812e19191e544e5/pub_worm-0.2.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.7
2024-09-25T22:14:37,051   Found link https://files.pythonhosted.org/packages/51/40/51943d1557acd97d0bd3c5e4ea9131e52649895cce775d41150299780858/pub_worm-0.2.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.8
2024-09-25T22:14:37,053 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/
2024-09-25T22:14:37,053 Getting page https://www.piwheels.org/simple/pub-worm/
2024-09-25T22:14:37,055 Found index url https://www.piwheels.org/simple/
2024-09-25T22:14:37,257 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html
2024-09-25T22:14:37,262   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.7-py3-none-any.whl#sha256=17c8216479e7796ddea333f1eccbc02c3362a728668da69bbf9e12b0239a9c8f (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,263   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.6-py3-none-any.whl#sha256=79f23813bcf27f437dd33b20d97761a1124ac1aa5aa80ff78557d4a6d78d0ff4 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,263   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.5-py3-none-any.whl#sha256=6372364213ad9038155851d20d7145b7fa44b8664abf2d718da4c2377fc3b56e (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,264   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.4-py3-none-any.whl#sha256=d426fb6e260eb1588f75b25281a6d726d740a9c88f34e8ffd0f0bbcd1e98acbc (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,264   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.3-py3-none-any.whl#sha256=08bbce548fac3ce388fa51fdcbf0a4b59a27180b5871a37d0bf5ced9c84e903a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,265   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.2-py3-none-any.whl#sha256=1f5f09a3598f66e5a30431d4c93cd6b581049d7829a791820ecb783ddad91c19 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,265   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.1-py3-none-any.whl#sha256=2cd541418ccbf9158ab7e18b187c7d7bc297928fbb5f4817f84f67552fd20c2a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,266   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.0-py3-none-any.whl#sha256=0fe4aa97fb602755d99717699395e7014f676d4ee4572930652a00f5b0407400 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,266   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.9-py3-none-any.whl#sha256=d36153a6672446b80a3ad4a128123f60f80f8f1444122936363fa80165d19f7a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,267   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.8-py3-none-any.whl#sha256=ad3c0117baeaa8c04f86149fa0dd71f6ea65d60213da6d6b570d0157572afe2c (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,267   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.7-py3-none-any.whl#sha256=5b88eaacc4effbdf9cc173c4732a2ac60eac0a420ccac19ba626a2be72b7f12a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,268   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.6-py3-none-any.whl#sha256=b18fb87705630077e0c3647f52c14b61e3b0ced91b1628a96bd5406c384f38ea (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,268   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.5-py3-none-any.whl#sha256=194f3e97c1023b9ba1e3ada69ff1de5c0883d9bf2e6c11d2b6173cf86f7d23ec (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,269   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.4-py3-none-any.whl#sha256=84de546e9b8e73c3cdbccb497a05d28c60537eda48d1b1fdb879be94e3fe3f27 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,269   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.3-py3-none-any.whl#sha256=c93d251f88dea0862a7a5878ea9d242ca2a3dfc38922c876268f91def0e576c1 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,270   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.2-py3-none-any.whl#sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,270   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,270   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-25T22:14:37,271 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/
2024-09-25T22:14:37,271 Skipping link: not a file: https://pypi.org/simple/pub-worm/
2024-09-25T22:14:37,291 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates
2024-09-25T22:14:37,293 Collecting pub-worm==0.2.8
2024-09-25T22:14:37,295   Created temporary directory: /tmp/pip-unpack-8vef51es
2024-09-25T22:14:37,436   Downloading pub_worm-0.2.8.tar.gz (393 kB)
2024-09-25T22:14:37,646   Added pub-worm==0.2.8 from https://files.pythonhosted.org/packages/51/40/51943d1557acd97d0bd3c5e4ea9131e52649895cce775d41150299780858/pub_worm-0.2.8.tar.gz to build tracker '/tmp/pip-build-tracker-faxtb554'
2024-09-25T22:14:37,648   Running setup.py (path:/tmp/pip-wheel-m57tupdh/pub-worm_c3177c2efc804ff7a27cca0f99c9eb4f/setup.py) egg_info for package pub-worm
2024-09-25T22:14:37,649   Created temporary directory: /tmp/pip-pip-egg-info-l8thtc2w
2024-09-25T22:14:37,650   Preparing metadata (setup.py): started
2024-09-25T22:14:37,651   Running command python setup.py egg_info
2024-09-25T22:14:38,740   running egg_info
2024-09-25T22:14:38,742   creating /tmp/pip-pip-egg-info-l8thtc2w/pub_worm.egg-info
2024-09-25T22:14:38,770   writing /tmp/pip-pip-egg-info-l8thtc2w/pub_worm.egg-info/PKG-INFO
2024-09-25T22:14:38,773   writing dependency_links to /tmp/pip-pip-egg-info-l8thtc2w/pub_worm.egg-info/dependency_links.txt
2024-09-25T22:14:38,775   writing requirements to /tmp/pip-pip-egg-info-l8thtc2w/pub_worm.egg-info/requires.txt
2024-09-25T22:14:38,776   writing top-level names to /tmp/pip-pip-egg-info-l8thtc2w/pub_worm.egg-info/top_level.txt
2024-09-25T22:14:38,778   writing manifest file '/tmp/pip-pip-egg-info-l8thtc2w/pub_worm.egg-info/SOURCES.txt'
2024-09-25T22:14:38,875   reading manifest file '/tmp/pip-pip-egg-info-l8thtc2w/pub_worm.egg-info/SOURCES.txt'
2024-09-25T22:14:38,878   reading manifest template 'MANIFEST.in'
2024-09-25T22:14:38,879   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-09-25T22:14:38,880   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-09-25T22:14:38,880   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-09-25T22:14:38,884   writing manifest file '/tmp/pip-pip-egg-info-l8thtc2w/pub_worm.egg-info/SOURCES.txt'
2024-09-25T22:14:38,994   Preparing metadata (setup.py): finished with status 'done'
2024-09-25T22:14:38,998   Source in /tmp/pip-wheel-m57tupdh/pub-worm_c3177c2efc804ff7a27cca0f99c9eb4f has version 0.2.8, which satisfies requirement pub-worm==0.2.8 from https://files.pythonhosted.org/packages/51/40/51943d1557acd97d0bd3c5e4ea9131e52649895cce775d41150299780858/pub_worm-0.2.8.tar.gz
2024-09-25T22:14:38,999   Removed pub-worm==0.2.8 from https://files.pythonhosted.org/packages/51/40/51943d1557acd97d0bd3c5e4ea9131e52649895cce775d41150299780858/pub_worm-0.2.8.tar.gz from build tracker '/tmp/pip-build-tracker-faxtb554'
2024-09-25T22:14:39,003 Created temporary directory: /tmp/pip-unpack-fsrrtgwt
2024-09-25T22:14:39,004 Created temporary directory: /tmp/pip-unpack-j83mew_3
2024-09-25T22:14:39,005 Building wheels for collected packages: pub-worm
2024-09-25T22:14:39,009   Created temporary directory: /tmp/pip-wheel-qv71ysf1
2024-09-25T22:14:39,010   Building wheel for pub-worm (setup.py): started
2024-09-25T22:14:39,011   Destination directory: /tmp/pip-wheel-qv71ysf1
2024-09-25T22:14:39,012   Running command python setup.py bdist_wheel
2024-09-25T22:14:40,261   running bdist_wheel
2024-09-25T22:14:40,394   running build
2024-09-25T22:14:40,395   running build_py
2024-09-25T22:14:40,425   creating build/lib/pub_worm
2024-09-25T22:14:40,427   copying pub_worm/__init__.py -> build/lib/pub_worm
2024-09-25T22:14:40,429   creating build/lib/tests
2024-09-25T22:14:40,430   copying tests/__init__.py -> build/lib/tests
2024-09-25T22:14:40,433   creating build/lib/pub_worm/wormbase
2024-09-25T22:14:40,434   copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase
2024-09-25T22:14:40,436   copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase
2024-09-25T22:14:40,438   copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase
2024-09-25T22:14:40,441   creating build/lib/pub_worm/orcid
2024-09-25T22:14:40,442   copying pub_worm/orcid/orcid_api.py -> build/lib/pub_worm/orcid
2024-09-25T22:14:40,444   copying pub_worm/orcid/__init__.py -> build/lib/pub_worm/orcid
2024-09-25T22:14:40,447   creating build/lib/pub_worm/ensembl
2024-09-25T22:14:40,448   copying pub_worm/ensembl/ensembl_api.py -> build/lib/pub_worm/ensembl
2024-09-25T22:14:40,450   copying pub_worm/ensembl/__init__.py -> build/lib/pub_worm/ensembl
2024-09-25T22:14:40,452   creating build/lib/pub_worm/ncbi
2024-09-25T22:14:40,453   copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi
2024-09-25T22:14:40,456   copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi
2024-09-25T22:14:40,458   creating build/lib/pub_worm/impact_factor
2024-09-25T22:14:40,459   copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor
2024-09-25T22:14:40,461   copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor
2024-09-25T22:14:40,463   creating build/lib/tests/wormbase
2024-09-25T22:14:40,465   copying tests/wormbase/test_wormbase_api.py -> build/lib/tests/wormbase
2024-09-25T22:14:40,467   copying tests/wormbase/__init__.py -> build/lib/tests/wormbase
2024-09-25T22:14:40,469   creating build/lib/tests/orcid
2024-09-25T22:14:40,470   copying tests/orcid/test_orcid_api.py -> build/lib/tests/orcid
2024-09-25T22:14:40,472   copying tests/orcid/__init__.py -> build/lib/tests/orcid
2024-09-25T22:14:40,474   creating build/lib/tests/ncbi
2024-09-25T22:14:40,475   copying tests/ncbi/test_entreze_api.py -> build/lib/tests/ncbi
2024-09-25T22:14:40,478   copying tests/ncbi/__init__.py -> build/lib/tests/ncbi
2024-09-25T22:14:40,480   creating build/lib/tests/impact_factor
2024-09-25T22:14:40,484   copying tests/impact_factor/test_get_impact_factor.py -> build/lib/tests/impact_factor
2024-09-25T22:14:40,486   copying tests/impact_factor/__init__.py -> build/lib/tests/impact_factor
2024-09-25T22:14:40,487   running egg_info
2024-09-25T22:14:40,515   writing pub_worm.egg-info/PKG-INFO
2024-09-25T22:14:40,517   writing dependency_links to pub_worm.egg-info/dependency_links.txt
2024-09-25T22:14:40,519   writing requirements to pub_worm.egg-info/requires.txt
2024-09-25T22:14:40,520   writing top-level names to pub_worm.egg-info/top_level.txt
2024-09-25T22:14:40,557   reading manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-09-25T22:14:40,563   reading manifest template 'MANIFEST.in'
2024-09-25T22:14:40,564   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-09-25T22:14:40,565   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-09-25T22:14:40,566   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-09-25T22:14:40,569   writing manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-09-25T22:14:40,572   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration.
2024-09-25T22:14:40,572   !!

2024-09-25T22:14:40,573           ********************************************************************************
2024-09-25T22:14:40,574           ############################
2024-09-25T22:14:40,574           # Package would be ignored #
2024-09-25T22:14:40,575           ############################
2024-09-25T22:14:40,575           Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1],
2024-09-25T22:14:40,576           but it is absent from setuptools' `packages` configuration.

2024-09-25T22:14:40,577           This leads to an ambiguous overall configuration. If you want to distribute this
2024-09-25T22:14:40,577           package, please make sure that 'pub_worm.impact_factor.data' is explicitly added
2024-09-25T22:14:40,578           to the `packages` configuration field.

2024-09-25T22:14:40,579           Alternatively, you can also rely on setuptools' discovery methods
2024-09-25T22:14:40,579           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-09-25T22:14:40,580           instead of `find_packages(...)`/`find:`).

2024-09-25T22:14:40,581           You can read more about "package discovery" on setuptools documentation page:

2024-09-25T22:14:40,582           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-09-25T22:14:40,583           If you don't want 'pub_worm.impact_factor.data' to be distributed and are
2024-09-25T22:14:40,583           already explicitly excluding 'pub_worm.impact_factor.data' via
2024-09-25T22:14:40,584           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-09-25T22:14:40,584           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-09-25T22:14:40,585           combination with a more fine grained `package-data` configuration.

2024-09-25T22:14:40,586           You can read more about "package data files" on setuptools documentation page:

2024-09-25T22:14:40,587           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-09-25T22:14:40,588           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-09-25T22:14:40,589                 even if it does not contain any `.py` files.
2024-09-25T22:14:40,589                 On the other hand, currently there is no concept of package data
2024-09-25T22:14:40,590                 directory, all directories are treated like packages.
2024-09-25T22:14:40,590           ********************************************************************************

2024-09-25T22:14:40,592   !!
2024-09-25T22:14:40,592     check.warn(importable)
2024-09-25T22:14:40,592   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration.
2024-09-25T22:14:40,593   !!

2024-09-25T22:14:40,594           ********************************************************************************
2024-09-25T22:14:40,594           ############################
2024-09-25T22:14:40,595           # Package would be ignored #
2024-09-25T22:14:40,595           ############################
2024-09-25T22:14:40,596           Python recognizes 'pub_worm.wormbase.data' as an importable package[^1],
2024-09-25T22:14:40,596           but it is absent from setuptools' `packages` configuration.

2024-09-25T22:14:40,597           This leads to an ambiguous overall configuration. If you want to distribute this
2024-09-25T22:14:40,597           package, please make sure that 'pub_worm.wormbase.data' is explicitly added
2024-09-25T22:14:40,598           to the `packages` configuration field.

2024-09-25T22:14:40,599           Alternatively, you can also rely on setuptools' discovery methods
2024-09-25T22:14:40,599           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-09-25T22:14:40,600           instead of `find_packages(...)`/`find:`).

2024-09-25T22:14:40,601           You can read more about "package discovery" on setuptools documentation page:

2024-09-25T22:14:40,602           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-09-25T22:14:40,603           If you don't want 'pub_worm.wormbase.data' to be distributed and are
2024-09-25T22:14:40,603           already explicitly excluding 'pub_worm.wormbase.data' via
2024-09-25T22:14:40,604           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-09-25T22:14:40,604           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-09-25T22:14:40,605           combination with a more fine grained `package-data` configuration.

2024-09-25T22:14:40,606           You can read more about "package data files" on setuptools documentation page:

2024-09-25T22:14:40,607           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-09-25T22:14:40,609           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-09-25T22:14:40,610                 even if it does not contain any `.py` files.
2024-09-25T22:14:40,611                 On the other hand, currently there is no concept of package data
2024-09-25T22:14:40,611                 directory, all directories are treated like packages.
2024-09-25T22:14:40,612           ********************************************************************************

2024-09-25T22:14:40,613   !!
2024-09-25T22:14:40,613     check.warn(importable)
2024-09-25T22:14:40,614   creating build/lib/pub_worm/wormbase/data
2024-09-25T22:14:40,614   copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data
2024-09-25T22:14:40,615   copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data
2024-09-25T22:14:40,616   copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data
2024-09-25T22:14:40,616   creating build/lib/pub_worm/impact_factor/data
2024-09-25T22:14:40,617   copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data
2024-09-25T22:14:40,676   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-09-25T22:14:40,676   !!

2024-09-25T22:14:40,678           ********************************************************************************
2024-09-25T22:14:40,679           Please avoid running ``setup.py`` directly.
2024-09-25T22:14:40,680           Instead, use pypa/build, pypa/installer or other
2024-09-25T22:14:40,680           standards-based tools.

2024-09-25T22:14:40,682           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-09-25T22:14:40,683           ********************************************************************************

2024-09-25T22:14:40,684   !!
2024-09-25T22:14:40,684     self.initialize_options()
2024-09-25T22:14:40,708   installing to build/bdist.linux-armv7l/wheel
2024-09-25T22:14:40,708   running install
2024-09-25T22:14:40,733   running install_lib
2024-09-25T22:14:40,760   creating build/bdist.linux-armv7l/wheel
2024-09-25T22:14:40,762   creating build/bdist.linux-armv7l/wheel/pub_worm
2024-09-25T22:14:40,764   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-09-25T22:14:40,766   copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-09-25T22:14:40,769   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-09-25T22:14:40,770   copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-09-25T22:14:40,772   copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-09-25T22:14:40,774   copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-09-25T22:14:40,776   copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-09-25T22:14:40,778   copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-09-25T22:14:40,781   creating build/bdist.linux-armv7l/wheel/pub_worm/orcid
2024-09-25T22:14:40,782   copying build/lib/pub_worm/orcid/orcid_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid
2024-09-25T22:14:40,785   copying build/lib/pub_worm/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid
2024-09-25T22:14:40,787   creating build/bdist.linux-armv7l/wheel/pub_worm/ensembl
2024-09-25T22:14:40,788   copying build/lib/pub_worm/ensembl/ensembl_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl
2024-09-25T22:14:40,791   copying build/lib/pub_worm/ensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl
2024-09-25T22:14:40,793   creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-09-25T22:14:40,794   copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi
2024-09-25T22:14:40,797   copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi
2024-09-25T22:14:40,799   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor
2024-09-25T22:14:40,801   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data
2024-09-25T22:14:40,803   copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor/data
2024-09-25T22:14:40,830   copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor
2024-09-25T22:14:40,832   copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor
2024-09-25T22:14:40,834   copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm
2024-09-25T22:14:40,836   creating build/bdist.linux-armv7l/wheel/tests
2024-09-25T22:14:40,838   creating build/bdist.linux-armv7l/wheel/tests/wormbase
2024-09-25T22:14:40,839   copying build/lib/tests/wormbase/test_wormbase_api.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase
2024-09-25T22:14:40,842   copying build/lib/tests/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase
2024-09-25T22:14:40,844   creating build/bdist.linux-armv7l/wheel/tests/orcid
2024-09-25T22:14:40,845   copying build/lib/tests/orcid/test_orcid_api.py -> build/bdist.linux-armv7l/wheel/./tests/orcid
2024-09-25T22:14:40,847   copying build/lib/tests/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/orcid
2024-09-25T22:14:40,849   creating build/bdist.linux-armv7l/wheel/tests/ncbi
2024-09-25T22:14:40,850   copying build/lib/tests/ncbi/test_entreze_api.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi
2024-09-25T22:14:40,852   copying build/lib/tests/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi
2024-09-25T22:14:40,855   creating build/bdist.linux-armv7l/wheel/tests/impact_factor
2024-09-25T22:14:40,856   copying build/lib/tests/impact_factor/test_get_impact_factor.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor
2024-09-25T22:14:40,857   copying build/lib/tests/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor
2024-09-25T22:14:40,859   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests
2024-09-25T22:14:40,860   running install_egg_info
2024-09-25T22:14:40,894   Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/./pub_worm-0.2.8-py3.11.egg-info
2024-09-25T22:14:40,905   running install_scripts
2024-09-25T22:14:40,915   creating build/bdist.linux-armv7l/wheel/pub_worm-0.2.8.dist-info/WHEEL
2024-09-25T22:14:40,918   creating '/tmp/pip-wheel-qv71ysf1/pub_worm-0.2.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-09-25T22:14:40,920   adding 'pub_worm/__init__.py'
2024-09-25T22:14:40,921   adding 'pub_worm/ensembl/__init__.py'
2024-09-25T22:14:40,923   adding 'pub_worm/ensembl/ensembl_api.py'
2024-09-25T22:14:40,925   adding 'pub_worm/impact_factor/__init__.py'
2024-09-25T22:14:40,926   adding 'pub_worm/impact_factor/impact_factor_lookup.py'
2024-09-25T22:14:41,091   adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv'
2024-09-25T22:14:41,101   adding 'pub_worm/ncbi/__init__.py'
2024-09-25T22:14:41,104   adding 'pub_worm/ncbi/entreze_api.py'
2024-09-25T22:14:41,106   adding 'pub_worm/orcid/__init__.py'
2024-09-25T22:14:41,107   adding 'pub_worm/orcid/orcid_api.py'
2024-09-25T22:14:41,109   adding 'pub_worm/wormbase/__init__.py'
2024-09-25T22:14:41,110   adding 'pub_worm/wormbase/to_csv_helpers.py'
2024-09-25T22:14:41,112   adding 'pub_worm/wormbase/wormbase_api.py'
2024-09-25T22:14:41,114   adding 'pub_worm/wormbase/data/wormbase_field_gene.json'
2024-09-25T22:14:41,115   adding 'pub_worm/wormbase/data/wormbase_field_paper.json'
2024-09-25T22:14:41,116   adding 'pub_worm/wormbase/data/wormbase_widget_gene.json'
2024-09-25T22:14:41,118   adding 'tests/__init__.py'
2024-09-25T22:14:41,120   adding 'tests/impact_factor/__init__.py'
2024-09-25T22:14:41,121   adding 'tests/impact_factor/test_get_impact_factor.py'
2024-09-25T22:14:41,122   adding 'tests/ncbi/__init__.py'
2024-09-25T22:14:41,124   adding 'tests/ncbi/test_entreze_api.py'
2024-09-25T22:14:41,126   adding 'tests/orcid/__init__.py'
2024-09-25T22:14:41,127   adding 'tests/orcid/test_orcid_api.py'
2024-09-25T22:14:41,128   adding 'tests/wormbase/__init__.py'
2024-09-25T22:14:41,130   adding 'tests/wormbase/test_wormbase_api.py'
2024-09-25T22:14:41,131   adding 'pub_worm-0.2.8.dist-info/METADATA'
2024-09-25T22:14:41,132   adding 'pub_worm-0.2.8.dist-info/WHEEL'
2024-09-25T22:14:41,133   adding 'pub_worm-0.2.8.dist-info/top_level.txt'
2024-09-25T22:14:41,133   adding 'pub_worm-0.2.8.dist-info/RECORD'
2024-09-25T22:14:41,140   removing build/bdist.linux-armv7l/wheel
2024-09-25T22:14:41,265   Building wheel for pub-worm (setup.py): finished with status 'done'
2024-09-25T22:14:41,272   Created wheel for pub-worm: filename=pub_worm-0.2.8-py3-none-any.whl size=399196 sha256=e38f0cefa270a92d5580a1df80252ec5a567937089f35923ee2f8fbaa4bab037
2024-09-25T22:14:41,273   Stored in directory: /tmp/pip-ephem-wheel-cache-ioyrkmgv/wheels/b4/b9/df/830fbf5909ea0e5e857e19cc29f45ac31262fffbcfd7e09880
2024-09-25T22:14:41,283 Successfully built pub-worm
2024-09-25T22:14:41,296 Removed build tracker: '/tmp/pip-build-tracker-faxtb554'