2024-09-28T15:09:47,271 Created temporary directory: /tmp/pip-build-tracker-esvd8lsu 2024-09-28T15:09:47,273 Initialized build tracking at /tmp/pip-build-tracker-esvd8lsu 2024-09-28T15:09:47,273 Created build tracker: /tmp/pip-build-tracker-esvd8lsu 2024-09-28T15:09:47,274 Entered build tracker: /tmp/pip-build-tracker-esvd8lsu 2024-09-28T15:09:47,275 Created temporary directory: /tmp/pip-wheel-b68j8s3t 2024-09-28T15:09:47,278 Created temporary directory: /tmp/pip-ephem-wheel-cache-mzatxlac 2024-09-28T15:09:47,321 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-09-28T15:09:47,323 2 location(s) to search for versions of pub-worm: 2024-09-28T15:09:47,323 * https://pypi.org/simple/pub-worm/ 2024-09-28T15:09:47,323 * https://www.piwheels.org/simple/pub-worm/ 2024-09-28T15:09:47,324 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/ 2024-09-28T15:09:47,325 Getting page https://pypi.org/simple/pub-worm/ 2024-09-28T15:09:47,326 Found index url https://pypi.org/simple/ 2024-09-28T15:09:47,544 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json 2024-09-28T15:09:47,549 Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1 2024-09-28T15:09:47,549 Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1 2024-09-28T15:09:47,550 Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2 2024-09-28T15:09:47,551 Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3 2024-09-28T15:09:47,551 Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4 2024-09-28T15:09:47,552 Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5 2024-09-28T15:09:47,552 Found link https://files.pythonhosted.org/packages/80/a0/1ce94f51ef16d83a09dea4f1985b068452c7880801597bd3eb82efd056fc/pub_worm-0.1.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.6 2024-09-28T15:09:47,553 Found link https://files.pythonhosted.org/packages/a3/21/a1cd9d1377b513ca7bb426346eb849aa4c84f3b3a3e1d80c0c7b05585d92/pub_worm-0.1.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.7 2024-09-28T15:09:47,554 Found link https://files.pythonhosted.org/packages/8f/fc/a0c2da18b286317e2843459c01336317cfeaa46efe28b278201968d1176d/pub_worm-0.1.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.8 2024-09-28T15:09:47,555 Found link https://files.pythonhosted.org/packages/05/8b/338f3714f1fa9c96e6eb4161453ee1686e7e852c3e568f53de43d9181cba/pub_worm-0.1.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.9 2024-09-28T15:09:47,555 Found link https://files.pythonhosted.org/packages/97/77/c5713bb989282f6cc978673a6444be453c991049862f200a583aae8061de/pub_worm-0.2.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.0 2024-09-28T15:09:47,556 Found link https://files.pythonhosted.org/packages/ba/54/2d9a593a5d99fea472983a809a8764698e89d7e9336eb4dece805bb685d1/pub_worm-0.2.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.1 2024-09-28T15:09:47,557 Found link https://files.pythonhosted.org/packages/da/24/bc0ded99393b36c2a10169df8df556b1ffa4efbcb6cc88c6d0d1245a4490/pub_worm-0.2.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.2 2024-09-28T15:09:47,557 Found link https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.3 2024-09-28T15:09:47,558 Found link https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.4 2024-09-28T15:09:47,559 Found link https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.5 2024-09-28T15:09:47,559 Found link https://files.pythonhosted.org/packages/7d/07/f0b969d2ecfe9daa5682c4565ed168d28aa1e45dff044a102bdb549c2cba/pub_worm-0.2.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.6 2024-09-28T15:09:47,560 Found link https://files.pythonhosted.org/packages/f5/e4/6c2a317ea14ff7acce17ad7087f4937e860cb48d28976812e19191e544e5/pub_worm-0.2.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.7 2024-09-28T15:09:47,561 Found link https://files.pythonhosted.org/packages/51/40/51943d1557acd97d0bd3c5e4ea9131e52649895cce775d41150299780858/pub_worm-0.2.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.8 2024-09-28T15:09:47,561 Found link https://files.pythonhosted.org/packages/96/9b/59b37b2341e80821c39f248138f73e554aa06b6ab437d44aca25ec803725/pub_worm-0.2.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.9 2024-09-28T15:09:47,562 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/ 2024-09-28T15:09:47,562 Getting page https://www.piwheels.org/simple/pub-worm/ 2024-09-28T15:09:47,564 Found index url https://www.piwheels.org/simple/ 2024-09-28T15:09:47,732 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html 2024-09-28T15:09:47,738 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.8-py3-none-any.whl#sha256=e38f0cefa270a92d5580a1df80252ec5a567937089f35923ee2f8fbaa4bab037 (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,739 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.7-py3-none-any.whl#sha256=17c8216479e7796ddea333f1eccbc02c3362a728668da69bbf9e12b0239a9c8f (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,740 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.6-py3-none-any.whl#sha256=79f23813bcf27f437dd33b20d97761a1124ac1aa5aa80ff78557d4a6d78d0ff4 (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,740 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.5-py3-none-any.whl#sha256=6372364213ad9038155851d20d7145b7fa44b8664abf2d718da4c2377fc3b56e (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,741 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.4-py3-none-any.whl#sha256=d426fb6e260eb1588f75b25281a6d726d740a9c88f34e8ffd0f0bbcd1e98acbc (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,742 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.3-py3-none-any.whl#sha256=08bbce548fac3ce388fa51fdcbf0a4b59a27180b5871a37d0bf5ced9c84e903a (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,742 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.2-py3-none-any.whl#sha256=1f5f09a3598f66e5a30431d4c93cd6b581049d7829a791820ecb783ddad91c19 (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,743 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.1-py3-none-any.whl#sha256=2cd541418ccbf9158ab7e18b187c7d7bc297928fbb5f4817f84f67552fd20c2a (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,743 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.0-py3-none-any.whl#sha256=0fe4aa97fb602755d99717699395e7014f676d4ee4572930652a00f5b0407400 (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,744 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.9-py3-none-any.whl#sha256=d36153a6672446b80a3ad4a128123f60f80f8f1444122936363fa80165d19f7a (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,745 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.8-py3-none-any.whl#sha256=ad3c0117baeaa8c04f86149fa0dd71f6ea65d60213da6d6b570d0157572afe2c (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,745 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.7-py3-none-any.whl#sha256=5b88eaacc4effbdf9cc173c4732a2ac60eac0a420ccac19ba626a2be72b7f12a (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,745 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.6-py3-none-any.whl#sha256=b18fb87705630077e0c3647f52c14b61e3b0ced91b1628a96bd5406c384f38ea (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,746 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.5-py3-none-any.whl#sha256=194f3e97c1023b9ba1e3ada69ff1de5c0883d9bf2e6c11d2b6173cf86f7d23ec (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,746 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.4-py3-none-any.whl#sha256=84de546e9b8e73c3cdbccb497a05d28c60537eda48d1b1fdb879be94e3fe3f27 (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,747 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.3-py3-none-any.whl#sha256=c93d251f88dea0862a7a5878ea9d242ca2a3dfc38922c876268f91def0e576c1 (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,747 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.2-py3-none-any.whl#sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,748 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,748 Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/) 2024-09-28T15:09:47,749 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/ 2024-09-28T15:09:47,750 Skipping link: not a file: https://pypi.org/simple/pub-worm/ 2024-09-28T15:09:47,769 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates 2024-09-28T15:09:47,771 Collecting pub-worm==0.2.9 2024-09-28T15:09:47,773 Created temporary directory: /tmp/pip-unpack-pw3ul4b1 2024-09-28T15:09:48,160 Downloading pub_worm-0.2.9.tar.gz (394 kB) 2024-09-28T15:09:48,360 Added pub-worm==0.2.9 from https://files.pythonhosted.org/packages/96/9b/59b37b2341e80821c39f248138f73e554aa06b6ab437d44aca25ec803725/pub_worm-0.2.9.tar.gz to build tracker '/tmp/pip-build-tracker-esvd8lsu' 2024-09-28T15:09:48,361 Running setup.py (path:/tmp/pip-wheel-b68j8s3t/pub-worm_63d843888938454bb95c4e5806762e8f/setup.py) egg_info for package pub-worm 2024-09-28T15:09:48,362 Created temporary directory: /tmp/pip-pip-egg-info-gdop2l6j 2024-09-28T15:09:48,363 Preparing metadata (setup.py): started 2024-09-28T15:09:48,365 Running command python setup.py egg_info 2024-09-28T15:09:49,439 running egg_info 2024-09-28T15:09:49,441 creating /tmp/pip-pip-egg-info-gdop2l6j/pub_worm.egg-info 2024-09-28T15:09:49,467 writing /tmp/pip-pip-egg-info-gdop2l6j/pub_worm.egg-info/PKG-INFO 2024-09-28T15:09:49,472 writing dependency_links to /tmp/pip-pip-egg-info-gdop2l6j/pub_worm.egg-info/dependency_links.txt 2024-09-28T15:09:49,473 writing requirements to /tmp/pip-pip-egg-info-gdop2l6j/pub_worm.egg-info/requires.txt 2024-09-28T15:09:49,474 writing top-level names to /tmp/pip-pip-egg-info-gdop2l6j/pub_worm.egg-info/top_level.txt 2024-09-28T15:09:49,476 writing manifest file '/tmp/pip-pip-egg-info-gdop2l6j/pub_worm.egg-info/SOURCES.txt' 2024-09-28T15:09:49,571 reading manifest file '/tmp/pip-pip-egg-info-gdop2l6j/pub_worm.egg-info/SOURCES.txt' 2024-09-28T15:09:49,573 reading manifest template 'MANIFEST.in' 2024-09-28T15:09:49,575 warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json' 2024-09-28T15:09:49,575 warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json' 2024-09-28T15:09:49,576 warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json' 2024-09-28T15:09:49,579 writing manifest file '/tmp/pip-pip-egg-info-gdop2l6j/pub_worm.egg-info/SOURCES.txt' 2024-09-28T15:09:49,687 Preparing metadata (setup.py): finished with status 'done' 2024-09-28T15:09:49,691 Source in /tmp/pip-wheel-b68j8s3t/pub-worm_63d843888938454bb95c4e5806762e8f has version 0.2.9, which satisfies requirement pub-worm==0.2.9 from https://files.pythonhosted.org/packages/96/9b/59b37b2341e80821c39f248138f73e554aa06b6ab437d44aca25ec803725/pub_worm-0.2.9.tar.gz 2024-09-28T15:09:49,692 Removed pub-worm==0.2.9 from https://files.pythonhosted.org/packages/96/9b/59b37b2341e80821c39f248138f73e554aa06b6ab437d44aca25ec803725/pub_worm-0.2.9.tar.gz from build tracker '/tmp/pip-build-tracker-esvd8lsu' 2024-09-28T15:09:49,696 Created temporary directory: /tmp/pip-unpack-0_ggm9bb 2024-09-28T15:09:49,697 Created temporary directory: /tmp/pip-unpack-zlsbsx_i 2024-09-28T15:09:49,698 Building wheels for collected packages: pub-worm 2024-09-28T15:09:49,702 Created temporary directory: /tmp/pip-wheel-roedfpex 2024-09-28T15:09:49,703 Building wheel for pub-worm (setup.py): started 2024-09-28T15:09:49,704 Destination directory: /tmp/pip-wheel-roedfpex 2024-09-28T15:09:49,705 Running command python setup.py bdist_wheel 2024-09-28T15:09:50,748 running bdist_wheel 2024-09-28T15:09:50,882 running build 2024-09-28T15:09:50,883 running build_py 2024-09-28T15:09:50,917 creating build/lib/pub_worm 2024-09-28T15:09:50,921 copying pub_worm/__init__.py -> build/lib/pub_worm 2024-09-28T15:09:50,925 creating build/lib/tests 2024-09-28T15:09:50,927 copying tests/__init__.py -> build/lib/tests 2024-09-28T15:09:50,931 creating build/lib/pub_worm/impact_factor 2024-09-28T15:09:50,933 copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor 2024-09-28T15:09:50,937 copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor 2024-09-28T15:09:50,942 creating build/lib/pub_worm/ncbi 2024-09-28T15:09:50,944 copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi 2024-09-28T15:09:50,951 copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi 2024-09-28T15:09:50,956 creating build/lib/pub_worm/wormbase 2024-09-28T15:09:50,958 copying pub_worm/wormbase/wormbase_util.py -> build/lib/pub_worm/wormbase 2024-09-28T15:09:50,960 copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase 2024-09-28T15:09:50,963 copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase 2024-09-28T15:09:50,967 copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase 2024-09-28T15:09:50,971 creating build/lib/pub_worm/orcid 2024-09-28T15:09:50,973 copying pub_worm/orcid/orcid_api.py -> build/lib/pub_worm/orcid 2024-09-28T15:09:50,977 copying pub_worm/orcid/__init__.py -> build/lib/pub_worm/orcid 2024-09-28T15:09:50,980 creating build/lib/pub_worm/ensembl 2024-09-28T15:09:50,982 copying pub_worm/ensembl/ensembl_api.py -> build/lib/pub_worm/ensembl 2024-09-28T15:09:50,984 copying pub_worm/ensembl/__init__.py -> build/lib/pub_worm/ensembl 2024-09-28T15:09:50,987 creating build/lib/tests/impact_factor 2024-09-28T15:09:50,988 copying tests/impact_factor/test_get_impact_factor.py -> build/lib/tests/impact_factor 2024-09-28T15:09:50,990 copying tests/impact_factor/__init__.py -> build/lib/tests/impact_factor 2024-09-28T15:09:50,992 creating build/lib/tests/ncbi 2024-09-28T15:09:50,994 copying tests/ncbi/test_entreze_api.py -> build/lib/tests/ncbi 2024-09-28T15:09:50,997 copying tests/ncbi/__init__.py -> build/lib/tests/ncbi 2024-09-28T15:09:50,999 creating build/lib/tests/wormbase 2024-09-28T15:09:51,000 copying tests/wormbase/__init__.py -> build/lib/tests/wormbase 2024-09-28T15:09:51,002 copying tests/wormbase/test_wormbase_api.py -> build/lib/tests/wormbase 2024-09-28T15:09:51,004 creating build/lib/tests/orcid 2024-09-28T15:09:51,008 copying tests/orcid/test_orcid_api.py -> build/lib/tests/orcid 2024-09-28T15:09:51,010 copying tests/orcid/__init__.py -> build/lib/tests/orcid 2024-09-28T15:09:51,011 running egg_info 2024-09-28T15:09:51,039 writing pub_worm.egg-info/PKG-INFO 2024-09-28T15:09:51,042 writing dependency_links to pub_worm.egg-info/dependency_links.txt 2024-09-28T15:09:51,043 writing requirements to pub_worm.egg-info/requires.txt 2024-09-28T15:09:51,044 writing top-level names to pub_worm.egg-info/top_level.txt 2024-09-28T15:09:51,082 reading manifest file 'pub_worm.egg-info/SOURCES.txt' 2024-09-28T15:09:51,088 reading manifest template 'MANIFEST.in' 2024-09-28T15:09:51,090 warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json' 2024-09-28T15:09:51,090 warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json' 2024-09-28T15:09:51,091 warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json' 2024-09-28T15:09:51,095 writing manifest file 'pub_worm.egg-info/SOURCES.txt' 2024-09-28T15:09:51,097 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration. 2024-09-28T15:09:51,098 !! 2024-09-28T15:09:51,099 ******************************************************************************** 2024-09-28T15:09:51,099 ############################ 2024-09-28T15:09:51,100 # Package would be ignored # 2024-09-28T15:09:51,100 ############################ 2024-09-28T15:09:51,101 Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1], 2024-09-28T15:09:51,102 but it is absent from setuptools' `packages` configuration. 2024-09-28T15:09:51,103 This leads to an ambiguous overall configuration. If you want to distribute this 2024-09-28T15:09:51,103 package, please make sure that 'pub_worm.impact_factor.data' is explicitly added 2024-09-28T15:09:51,104 to the `packages` configuration field. 2024-09-28T15:09:51,105 Alternatively, you can also rely on setuptools' discovery methods 2024-09-28T15:09:51,106 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-09-28T15:09:51,106 instead of `find_packages(...)`/`find:`). 2024-09-28T15:09:51,107 You can read more about "package discovery" on setuptools documentation page: 2024-09-28T15:09:51,108 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-09-28T15:09:51,110 If you don't want 'pub_worm.impact_factor.data' to be distributed and are 2024-09-28T15:09:51,110 already explicitly excluding 'pub_worm.impact_factor.data' via 2024-09-28T15:09:51,111 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-09-28T15:09:51,111 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-09-28T15:09:51,112 combination with a more fine grained `package-data` configuration. 2024-09-28T15:09:51,113 You can read more about "package data files" on setuptools documentation page: 2024-09-28T15:09:51,115 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-09-28T15:09:51,132 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-09-28T15:09:51,133 even if it does not contain any `.py` files. 2024-09-28T15:09:51,134 On the other hand, currently there is no concept of package data 2024-09-28T15:09:51,134 directory, all directories are treated like packages. 2024-09-28T15:09:51,135 ******************************************************************************** 2024-09-28T15:09:51,136 !! 2024-09-28T15:09:51,136 check.warn(importable) 2024-09-28T15:09:51,137 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration. 2024-09-28T15:09:51,137 !! 2024-09-28T15:09:51,138 ******************************************************************************** 2024-09-28T15:09:51,139 ############################ 2024-09-28T15:09:51,139 # Package would be ignored # 2024-09-28T15:09:51,139 ############################ 2024-09-28T15:09:51,140 Python recognizes 'pub_worm.wormbase.data' as an importable package[^1], 2024-09-28T15:09:51,140 but it is absent from setuptools' `packages` configuration. 2024-09-28T15:09:51,141 This leads to an ambiguous overall configuration. If you want to distribute this 2024-09-28T15:09:51,142 package, please make sure that 'pub_worm.wormbase.data' is explicitly added 2024-09-28T15:09:51,143 to the `packages` configuration field. 2024-09-28T15:09:51,143 Alternatively, you can also rely on setuptools' discovery methods 2024-09-28T15:09:51,144 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-09-28T15:09:51,145 instead of `find_packages(...)`/`find:`). 2024-09-28T15:09:51,146 You can read more about "package discovery" on setuptools documentation page: 2024-09-28T15:09:51,147 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-09-28T15:09:51,148 If you don't want 'pub_worm.wormbase.data' to be distributed and are 2024-09-28T15:09:51,148 already explicitly excluding 'pub_worm.wormbase.data' via 2024-09-28T15:09:51,149 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-09-28T15:09:51,150 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-09-28T15:09:51,150 combination with a more fine grained `package-data` configuration. 2024-09-28T15:09:51,151 You can read more about "package data files" on setuptools documentation page: 2024-09-28T15:09:51,153 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-09-28T15:09:51,154 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-09-28T15:09:51,155 even if it does not contain any `.py` files. 2024-09-28T15:09:51,155 On the other hand, currently there is no concept of package data 2024-09-28T15:09:51,156 directory, all directories are treated like packages. 2024-09-28T15:09:51,156 ******************************************************************************** 2024-09-28T15:09:51,157 !! 2024-09-28T15:09:51,158 check.warn(importable) 2024-09-28T15:09:51,159 creating build/lib/pub_worm/impact_factor/data 2024-09-28T15:09:51,159 copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data 2024-09-28T15:09:51,160 creating build/lib/pub_worm/wormbase/data 2024-09-28T15:09:51,160 copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data 2024-09-28T15:09:51,161 copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data 2024-09-28T15:09:51,162 copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data 2024-09-28T15:09:51,178 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-09-28T15:09:51,179 !! 2024-09-28T15:09:51,180 ******************************************************************************** 2024-09-28T15:09:51,180 Please avoid running ``setup.py`` directly. 2024-09-28T15:09:51,181 Instead, use pypa/build, pypa/installer or other 2024-09-28T15:09:51,181 standards-based tools. 2024-09-28T15:09:51,182 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-09-28T15:09:51,183 ******************************************************************************** 2024-09-28T15:09:51,184 !! 2024-09-28T15:09:51,184 self.initialize_options() 2024-09-28T15:09:51,207 installing to build/bdist.linux-armv7l/wheel 2024-09-28T15:09:51,208 running install 2024-09-28T15:09:51,232 running install_lib 2024-09-28T15:09:51,259 creating build/bdist.linux-armv7l/wheel 2024-09-28T15:09:51,262 creating build/bdist.linux-armv7l/wheel/pub_worm 2024-09-28T15:09:51,264 creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor 2024-09-28T15:09:51,266 copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor 2024-09-28T15:09:51,268 copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor 2024-09-28T15:09:51,270 creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data 2024-09-28T15:09:51,271 copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor/data 2024-09-28T15:09:51,309 creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi 2024-09-28T15:09:51,311 copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi 2024-09-28T15:09:51,316 copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi 2024-09-28T15:09:51,320 creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase 2024-09-28T15:09:51,322 copying build/lib/pub_worm/wormbase/wormbase_util.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase 2024-09-28T15:09:51,327 copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase 2024-09-28T15:09:51,332 creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data 2024-09-28T15:09:51,335 copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data 2024-09-28T15:09:51,339 copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data 2024-09-28T15:09:51,341 copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data 2024-09-28T15:09:51,343 copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase 2024-09-28T15:09:51,345 copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase 2024-09-28T15:09:51,347 copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm 2024-09-28T15:09:51,349 creating build/bdist.linux-armv7l/wheel/pub_worm/orcid 2024-09-28T15:09:51,350 copying build/lib/pub_worm/orcid/orcid_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid 2024-09-28T15:09:51,352 copying build/lib/pub_worm/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid 2024-09-28T15:09:51,354 creating build/bdist.linux-armv7l/wheel/pub_worm/ensembl 2024-09-28T15:09:51,356 copying build/lib/pub_worm/ensembl/ensembl_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl 2024-09-28T15:09:51,358 copying build/lib/pub_worm/ensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl 2024-09-28T15:09:51,360 creating build/bdist.linux-armv7l/wheel/tests 2024-09-28T15:09:51,362 creating build/bdist.linux-armv7l/wheel/tests/impact_factor 2024-09-28T15:09:51,363 copying build/lib/tests/impact_factor/test_get_impact_factor.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor 2024-09-28T15:09:51,365 copying build/lib/tests/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor 2024-09-28T15:09:51,367 creating build/bdist.linux-armv7l/wheel/tests/ncbi 2024-09-28T15:09:51,368 copying build/lib/tests/ncbi/test_entreze_api.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi 2024-09-28T15:09:51,370 copying build/lib/tests/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi 2024-09-28T15:09:51,372 creating build/bdist.linux-armv7l/wheel/tests/wormbase 2024-09-28T15:09:51,373 copying build/lib/tests/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase 2024-09-28T15:09:51,375 copying build/lib/tests/wormbase/test_wormbase_api.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase 2024-09-28T15:09:51,376 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2024-09-28T15:09:51,379 creating build/bdist.linux-armv7l/wheel/tests/orcid 2024-09-28T15:09:51,380 copying build/lib/tests/orcid/test_orcid_api.py -> build/bdist.linux-armv7l/wheel/./tests/orcid 2024-09-28T15:09:51,382 copying build/lib/tests/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/orcid 2024-09-28T15:09:51,383 running install_egg_info 2024-09-28T15:09:51,417 Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/./pub_worm-0.2.9-py3.11.egg-info 2024-09-28T15:09:51,428 running install_scripts 2024-09-28T15:09:51,441 creating build/bdist.linux-armv7l/wheel/pub_worm-0.2.9.dist-info/WHEEL 2024-09-28T15:09:51,443 creating '/tmp/pip-wheel-roedfpex/pub_worm-0.2.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-09-28T15:09:51,446 adding 'pub_worm/__init__.py' 2024-09-28T15:09:51,447 adding 'pub_worm/ensembl/__init__.py' 2024-09-28T15:09:51,449 adding 'pub_worm/ensembl/ensembl_api.py' 2024-09-28T15:09:51,451 adding 'pub_worm/impact_factor/__init__.py' 2024-09-28T15:09:51,452 adding 'pub_worm/impact_factor/impact_factor_lookup.py' 2024-09-28T15:09:51,618 adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv' 2024-09-28T15:09:51,629 adding 'pub_worm/ncbi/__init__.py' 2024-09-28T15:09:51,631 adding 'pub_worm/ncbi/entreze_api.py' 2024-09-28T15:09:51,633 adding 'pub_worm/orcid/__init__.py' 2024-09-28T15:09:51,634 adding 'pub_worm/orcid/orcid_api.py' 2024-09-28T15:09:51,636 adding 'pub_worm/wormbase/__init__.py' 2024-09-28T15:09:51,637 adding 'pub_worm/wormbase/to_csv_helpers.py' 2024-09-28T15:09:51,639 adding 'pub_worm/wormbase/wormbase_api.py' 2024-09-28T15:09:51,641 adding 'pub_worm/wormbase/wormbase_util.py' 2024-09-28T15:09:51,642 adding 'pub_worm/wormbase/data/wormbase_field_gene.json' 2024-09-28T15:09:51,644 adding 'pub_worm/wormbase/data/wormbase_field_paper.json' 2024-09-28T15:09:51,645 adding 'pub_worm/wormbase/data/wormbase_widget_gene.json' 2024-09-28T15:09:51,647 adding 'tests/__init__.py' 2024-09-28T15:09:51,649 adding 'tests/impact_factor/__init__.py' 2024-09-28T15:09:51,650 adding 'tests/impact_factor/test_get_impact_factor.py' 2024-09-28T15:09:51,652 adding 'tests/ncbi/__init__.py' 2024-09-28T15:09:51,653 adding 'tests/ncbi/test_entreze_api.py' 2024-09-28T15:09:51,655 adding 'tests/orcid/__init__.py' 2024-09-28T15:09:51,656 adding 'tests/orcid/test_orcid_api.py' 2024-09-28T15:09:51,657 adding 'tests/wormbase/__init__.py' 2024-09-28T15:09:51,659 adding 'tests/wormbase/test_wormbase_api.py' 2024-09-28T15:09:51,660 adding 'pub_worm-0.2.9.dist-info/METADATA' 2024-09-28T15:09:51,661 adding 'pub_worm-0.2.9.dist-info/WHEEL' 2024-09-28T15:09:51,662 adding 'pub_worm-0.2.9.dist-info/top_level.txt' 2024-09-28T15:09:51,663 adding 'pub_worm-0.2.9.dist-info/RECORD' 2024-09-28T15:09:51,669 removing build/bdist.linux-armv7l/wheel 2024-09-28T15:09:51,792 Building wheel for pub-worm (setup.py): finished with status 'done' 2024-09-28T15:09:51,799 Created wheel for pub-worm: filename=pub_worm-0.2.9-py3-none-any.whl size=400441 sha256=0b5f756b21fa4c17fbed60801bd4dbc1fc1952ed843281a527c88d757d65485b 2024-09-28T15:09:51,800 Stored in directory: /tmp/pip-ephem-wheel-cache-mzatxlac/wheels/33/f7/4b/2bd6a42e47a2bcde818adb243d36ab737bb03ab3f70c275f90 2024-09-28T15:09:51,810 Successfully built pub-worm 2024-09-28T15:09:51,831 Removed build tracker: '/tmp/pip-build-tracker-esvd8lsu'