2024-09-30T23:58:36,025 Created temporary directory: /tmp/pip-build-tracker-mpju9zww
2024-09-30T23:58:36,026 Initialized build tracking at /tmp/pip-build-tracker-mpju9zww
2024-09-30T23:58:36,027 Created build tracker: /tmp/pip-build-tracker-mpju9zww
2024-09-30T23:58:36,027 Entered build tracker: /tmp/pip-build-tracker-mpju9zww
2024-09-30T23:58:36,028 Created temporary directory: /tmp/pip-wheel-ob88tl5c
2024-09-30T23:58:36,032 Created temporary directory: /tmp/pip-ephem-wheel-cache-8kr2d6z9
2024-09-30T23:58:36,079 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-09-30T23:58:36,082 2 location(s) to search for versions of pub-worm:
2024-09-30T23:58:36,082 * https://pypi.org/simple/pub-worm/
2024-09-30T23:58:36,082 * https://www.piwheels.org/simple/pub-worm/
2024-09-30T23:58:36,083 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/
2024-09-30T23:58:36,084 Getting page https://pypi.org/simple/pub-worm/
2024-09-30T23:58:36,085 Found index url https://pypi.org/simple/
2024-09-30T23:58:36,307 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json
2024-09-30T23:58:36,312   Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1
2024-09-30T23:58:36,313   Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1
2024-09-30T23:58:36,313   Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2
2024-09-30T23:58:36,314   Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3
2024-09-30T23:58:36,314   Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4
2024-09-30T23:58:36,315   Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5
2024-09-30T23:58:36,316   Found link https://files.pythonhosted.org/packages/80/a0/1ce94f51ef16d83a09dea4f1985b068452c7880801597bd3eb82efd056fc/pub_worm-0.1.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.6
2024-09-30T23:58:36,316   Found link https://files.pythonhosted.org/packages/a3/21/a1cd9d1377b513ca7bb426346eb849aa4c84f3b3a3e1d80c0c7b05585d92/pub_worm-0.1.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.7
2024-09-30T23:58:36,317   Found link https://files.pythonhosted.org/packages/8f/fc/a0c2da18b286317e2843459c01336317cfeaa46efe28b278201968d1176d/pub_worm-0.1.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.8
2024-09-30T23:58:36,318   Found link https://files.pythonhosted.org/packages/05/8b/338f3714f1fa9c96e6eb4161453ee1686e7e852c3e568f53de43d9181cba/pub_worm-0.1.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.9
2024-09-30T23:58:36,319   Found link https://files.pythonhosted.org/packages/97/77/c5713bb989282f6cc978673a6444be453c991049862f200a583aae8061de/pub_worm-0.2.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.0
2024-09-30T23:58:36,319   Found link https://files.pythonhosted.org/packages/ba/54/2d9a593a5d99fea472983a809a8764698e89d7e9336eb4dece805bb685d1/pub_worm-0.2.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.1
2024-09-30T23:58:36,320   Found link https://files.pythonhosted.org/packages/da/24/bc0ded99393b36c2a10169df8df556b1ffa4efbcb6cc88c6d0d1245a4490/pub_worm-0.2.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.2
2024-09-30T23:58:36,321   Found link https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.3
2024-09-30T23:58:36,321   Found link https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.4
2024-09-30T23:58:36,322   Found link https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.5
2024-09-30T23:58:36,323   Found link https://files.pythonhosted.org/packages/7d/07/f0b969d2ecfe9daa5682c4565ed168d28aa1e45dff044a102bdb549c2cba/pub_worm-0.2.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.6
2024-09-30T23:58:36,323   Found link https://files.pythonhosted.org/packages/f5/e4/6c2a317ea14ff7acce17ad7087f4937e860cb48d28976812e19191e544e5/pub_worm-0.2.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.7
2024-09-30T23:58:36,324   Found link https://files.pythonhosted.org/packages/51/40/51943d1557acd97d0bd3c5e4ea9131e52649895cce775d41150299780858/pub_worm-0.2.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.8
2024-09-30T23:58:36,325   Found link https://files.pythonhosted.org/packages/96/9b/59b37b2341e80821c39f248138f73e554aa06b6ab437d44aca25ec803725/pub_worm-0.2.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.9
2024-09-30T23:58:36,325   Found link https://files.pythonhosted.org/packages/6a/ca/c5f05833b54c4ddb2b8d70e1c3e9631b195d28c7dc92cfbbd22d539d9f0e/pub_worm-0.3.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.0
2024-09-30T23:58:36,326   Found link https://files.pythonhosted.org/packages/85/d9/83a18281c7792db68fb6f9af515e5a50b5235c2d9816586d522060be97a7/pub_worm-0.3.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.1
2024-09-30T23:58:36,326   Found link https://files.pythonhosted.org/packages/d6/ea/750af1e220e8ea7ca825e574c5f8485c82cebc05826882f736e492d11d4a/pub_worm-0.3.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.2
2024-09-30T23:58:36,327 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/
2024-09-30T23:58:36,328 Getting page https://www.piwheels.org/simple/pub-worm/
2024-09-30T23:58:36,329 Found index url https://www.piwheels.org/simple/
2024-09-30T23:58:36,487 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html
2024-09-30T23:58:36,494   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.1-py3-none-any.whl#sha256=99d9dcd7ed7ebda453e569930ae75ceab3b9c7c8eeee77028acdd9c83809f0f3 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,494   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.0-py3-none-any.whl#sha256=25de0e60cf04e1f2361dafa06cd0ccc77faf62f68e246eb8e83301e354d9150a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,495   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.9-py3-none-any.whl#sha256=0b5f756b21fa4c17fbed60801bd4dbc1fc1952ed843281a527c88d757d65485b (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,495   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.8-py3-none-any.whl#sha256=e38f0cefa270a92d5580a1df80252ec5a567937089f35923ee2f8fbaa4bab037 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,496   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.7-py3-none-any.whl#sha256=17c8216479e7796ddea333f1eccbc02c3362a728668da69bbf9e12b0239a9c8f (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,497   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.6-py3-none-any.whl#sha256=79f23813bcf27f437dd33b20d97761a1124ac1aa5aa80ff78557d4a6d78d0ff4 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,497   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.5-py3-none-any.whl#sha256=6372364213ad9038155851d20d7145b7fa44b8664abf2d718da4c2377fc3b56e (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,498   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.4-py3-none-any.whl#sha256=d426fb6e260eb1588f75b25281a6d726d740a9c88f34e8ffd0f0bbcd1e98acbc (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,499   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.3-py3-none-any.whl#sha256=08bbce548fac3ce388fa51fdcbf0a4b59a27180b5871a37d0bf5ced9c84e903a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,499   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.2-py3-none-any.whl#sha256=1f5f09a3598f66e5a30431d4c93cd6b581049d7829a791820ecb783ddad91c19 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,500   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.1-py3-none-any.whl#sha256=2cd541418ccbf9158ab7e18b187c7d7bc297928fbb5f4817f84f67552fd20c2a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,500   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.0-py3-none-any.whl#sha256=0fe4aa97fb602755d99717699395e7014f676d4ee4572930652a00f5b0407400 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,501   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.9-py3-none-any.whl#sha256=d36153a6672446b80a3ad4a128123f60f80f8f1444122936363fa80165d19f7a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,501   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.8-py3-none-any.whl#sha256=ad3c0117baeaa8c04f86149fa0dd71f6ea65d60213da6d6b570d0157572afe2c (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,502   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.7-py3-none-any.whl#sha256=5b88eaacc4effbdf9cc173c4732a2ac60eac0a420ccac19ba626a2be72b7f12a (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,502   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.6-py3-none-any.whl#sha256=b18fb87705630077e0c3647f52c14b61e3b0ced91b1628a96bd5406c384f38ea (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,503   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.5-py3-none-any.whl#sha256=194f3e97c1023b9ba1e3ada69ff1de5c0883d9bf2e6c11d2b6173cf86f7d23ec (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,504   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.4-py3-none-any.whl#sha256=84de546e9b8e73c3cdbccb497a05d28c60537eda48d1b1fdb879be94e3fe3f27 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,504   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.3-py3-none-any.whl#sha256=c93d251f88dea0862a7a5878ea9d242ca2a3dfc38922c876268f91def0e576c1 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,505   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.2-py3-none-any.whl#sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,505   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,506   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/)
2024-09-30T23:58:36,507 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/
2024-09-30T23:58:36,507 Skipping link: not a file: https://pypi.org/simple/pub-worm/
2024-09-30T23:58:36,529 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates
2024-09-30T23:58:36,531 Collecting pub-worm==0.3.2
2024-09-30T23:58:36,533   Created temporary directory: /tmp/pip-unpack-fmumzy_z
2024-09-30T23:58:36,761   Downloading pub_worm-0.3.2.tar.gz (395 kB)
2024-09-30T23:58:36,956   Added pub-worm==0.3.2 from https://files.pythonhosted.org/packages/d6/ea/750af1e220e8ea7ca825e574c5f8485c82cebc05826882f736e492d11d4a/pub_worm-0.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-mpju9zww'
2024-09-30T23:58:36,958   Running setup.py (path:/tmp/pip-wheel-ob88tl5c/pub-worm_dead76d14db84f6f8b958c8f3a519bee/setup.py) egg_info for package pub-worm
2024-09-30T23:58:36,959   Created temporary directory: /tmp/pip-pip-egg-info-s_te9962
2024-09-30T23:58:36,960   Preparing metadata (setup.py): started
2024-09-30T23:58:36,961   Running command python setup.py egg_info
2024-09-30T23:58:38,039   running egg_info
2024-09-30T23:58:38,041   creating /tmp/pip-pip-egg-info-s_te9962/pub_worm.egg-info
2024-09-30T23:58:38,067   writing /tmp/pip-pip-egg-info-s_te9962/pub_worm.egg-info/PKG-INFO
2024-09-30T23:58:38,071   writing dependency_links to /tmp/pip-pip-egg-info-s_te9962/pub_worm.egg-info/dependency_links.txt
2024-09-30T23:58:38,073   writing requirements to /tmp/pip-pip-egg-info-s_te9962/pub_worm.egg-info/requires.txt
2024-09-30T23:58:38,074   writing top-level names to /tmp/pip-pip-egg-info-s_te9962/pub_worm.egg-info/top_level.txt
2024-09-30T23:58:38,075   writing manifest file '/tmp/pip-pip-egg-info-s_te9962/pub_worm.egg-info/SOURCES.txt'
2024-09-30T23:58:38,172   reading manifest file '/tmp/pip-pip-egg-info-s_te9962/pub_worm.egg-info/SOURCES.txt'
2024-09-30T23:58:38,173   reading manifest template 'MANIFEST.in'
2024-09-30T23:58:38,175   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-09-30T23:58:38,175   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-09-30T23:58:38,176   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-09-30T23:58:38,179   writing manifest file '/tmp/pip-pip-egg-info-s_te9962/pub_worm.egg-info/SOURCES.txt'
2024-09-30T23:58:38,289   Preparing metadata (setup.py): finished with status 'done'
2024-09-30T23:58:38,293   Source in /tmp/pip-wheel-ob88tl5c/pub-worm_dead76d14db84f6f8b958c8f3a519bee has version 0.3.2, which satisfies requirement pub-worm==0.3.2 from https://files.pythonhosted.org/packages/d6/ea/750af1e220e8ea7ca825e574c5f8485c82cebc05826882f736e492d11d4a/pub_worm-0.3.2.tar.gz
2024-09-30T23:58:38,294   Removed pub-worm==0.3.2 from https://files.pythonhosted.org/packages/d6/ea/750af1e220e8ea7ca825e574c5f8485c82cebc05826882f736e492d11d4a/pub_worm-0.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-mpju9zww'
2024-09-30T23:58:38,299 Created temporary directory: /tmp/pip-unpack-4gm9etql
2024-09-30T23:58:38,300 Created temporary directory: /tmp/pip-unpack-hk4qbidr
2024-09-30T23:58:38,300 Building wheels for collected packages: pub-worm
2024-09-30T23:58:38,304   Created temporary directory: /tmp/pip-wheel-bfo0_kg3
2024-09-30T23:58:38,305   Building wheel for pub-worm (setup.py): started
2024-09-30T23:58:38,306   Destination directory: /tmp/pip-wheel-bfo0_kg3
2024-09-30T23:58:38,307   Running command python setup.py bdist_wheel
2024-09-30T23:58:39,333   running bdist_wheel
2024-09-30T23:58:39,463   running build
2024-09-30T23:58:39,464   running build_py
2024-09-30T23:58:39,498   creating build/lib/tests
2024-09-30T23:58:39,500   copying tests/__init__.py -> build/lib/tests
2024-09-30T23:58:39,502   creating build/lib/pub_worm
2024-09-30T23:58:39,503   copying pub_worm/__init__.py -> build/lib/pub_worm
2024-09-30T23:58:39,505   creating build/lib/tests/impact_factor
2024-09-30T23:58:39,506   copying tests/impact_factor/test_get_impact_factor.py -> build/lib/tests/impact_factor
2024-09-30T23:58:39,508   copying tests/impact_factor/__init__.py -> build/lib/tests/impact_factor
2024-09-30T23:58:39,510   creating build/lib/tests/orcid
2024-09-30T23:58:39,512   copying tests/orcid/__init__.py -> build/lib/tests/orcid
2024-09-30T23:58:39,513   copying tests/orcid/test_orcid_api.py -> build/lib/tests/orcid
2024-09-30T23:58:39,515   creating build/lib/tests/ncbi
2024-09-30T23:58:39,516   copying tests/ncbi/test_entreze_api.py -> build/lib/tests/ncbi
2024-09-30T23:58:39,519   copying tests/ncbi/__init__.py -> build/lib/tests/ncbi
2024-09-30T23:58:39,520   creating build/lib/tests/wormbase
2024-09-30T23:58:39,522   copying tests/wormbase/__init__.py -> build/lib/tests/wormbase
2024-09-30T23:58:39,523   copying tests/wormbase/test_wormbase_api.py -> build/lib/tests/wormbase
2024-09-30T23:58:39,525   creating build/lib/pub_worm/ensembl
2024-09-30T23:58:39,526   copying pub_worm/ensembl/__init__.py -> build/lib/pub_worm/ensembl
2024-09-30T23:58:39,528   copying pub_worm/ensembl/ensembl_api.py -> build/lib/pub_worm/ensembl
2024-09-30T23:58:39,530   creating build/lib/pub_worm/impact_factor
2024-09-30T23:58:39,531   copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor
2024-09-30T23:58:39,533   copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor
2024-09-30T23:58:39,535   creating build/lib/pub_worm/orcid
2024-09-30T23:58:39,536   copying pub_worm/orcid/orcid_api.py -> build/lib/pub_worm/orcid
2024-09-30T23:58:39,539   copying pub_worm/orcid/__init__.py -> build/lib/pub_worm/orcid
2024-09-30T23:58:39,541   creating build/lib/pub_worm/ncbi
2024-09-30T23:58:39,542   copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi
2024-09-30T23:58:39,544   copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi
2024-09-30T23:58:39,547   creating build/lib/pub_worm/wormbase
2024-09-30T23:58:39,550   copying pub_worm/wormbase/wormbase_util.py -> build/lib/pub_worm/wormbase
2024-09-30T23:58:39,552   copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase
2024-09-30T23:58:39,553   copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase
2024-09-30T23:58:39,555   copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase
2024-09-30T23:58:39,557   running egg_info
2024-09-30T23:58:39,585   writing pub_worm.egg-info/PKG-INFO
2024-09-30T23:58:39,587   writing dependency_links to pub_worm.egg-info/dependency_links.txt
2024-09-30T23:58:39,589   writing requirements to pub_worm.egg-info/requires.txt
2024-09-30T23:58:39,590   writing top-level names to pub_worm.egg-info/top_level.txt
2024-09-30T23:58:39,627   reading manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-09-30T23:58:39,633   reading manifest template 'MANIFEST.in'
2024-09-30T23:58:39,635   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-09-30T23:58:39,635   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-09-30T23:58:39,636   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-09-30T23:58:39,639   writing manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-09-30T23:58:39,641   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration.
2024-09-30T23:58:39,642   !!

2024-09-30T23:58:39,643           ********************************************************************************
2024-09-30T23:58:39,644           ############################
2024-09-30T23:58:39,644           # Package would be ignored #
2024-09-30T23:58:39,645           ############################
2024-09-30T23:58:39,645           Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1],
2024-09-30T23:58:39,646           but it is absent from setuptools' `packages` configuration.

2024-09-30T23:58:39,647           This leads to an ambiguous overall configuration. If you want to distribute this
2024-09-30T23:58:39,648           package, please make sure that 'pub_worm.impact_factor.data' is explicitly added
2024-09-30T23:58:39,648           to the `packages` configuration field.

2024-09-30T23:58:39,649           Alternatively, you can also rely on setuptools' discovery methods
2024-09-30T23:58:39,650           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-09-30T23:58:39,650           instead of `find_packages(...)`/`find:`).

2024-09-30T23:58:39,651           You can read more about "package discovery" on setuptools documentation page:

2024-09-30T23:58:39,652           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-09-30T23:58:39,653           If you don't want 'pub_worm.impact_factor.data' to be distributed and are
2024-09-30T23:58:39,653           already explicitly excluding 'pub_worm.impact_factor.data' via
2024-09-30T23:58:39,653           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-09-30T23:58:39,654           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-09-30T23:58:39,654           combination with a more fine grained `package-data` configuration.

2024-09-30T23:58:39,655           You can read more about "package data files" on setuptools documentation page:

2024-09-30T23:58:39,656           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-09-30T23:58:39,657           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-09-30T23:58:39,658                 even if it does not contain any `.py` files.
2024-09-30T23:58:39,663                 On the other hand, currently there is no concept of package data
2024-09-30T23:58:39,671                 directory, all directories are treated like packages.
2024-09-30T23:58:39,675           ********************************************************************************

2024-09-30T23:58:39,676   !!
2024-09-30T23:58:39,677     check.warn(importable)
2024-09-30T23:58:39,677   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration.
2024-09-30T23:58:39,678   !!

2024-09-30T23:58:39,679           ********************************************************************************
2024-09-30T23:58:39,679           ############################
2024-09-30T23:58:39,680           # Package would be ignored #
2024-09-30T23:58:39,681           ############################
2024-09-30T23:58:39,681           Python recognizes 'pub_worm.wormbase.data' as an importable package[^1],
2024-09-30T23:58:39,682           but it is absent from setuptools' `packages` configuration.

2024-09-30T23:58:39,683           This leads to an ambiguous overall configuration. If you want to distribute this
2024-09-30T23:58:39,683           package, please make sure that 'pub_worm.wormbase.data' is explicitly added
2024-09-30T23:58:39,684           to the `packages` configuration field.

2024-09-30T23:58:39,685           Alternatively, you can also rely on setuptools' discovery methods
2024-09-30T23:58:39,685           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-09-30T23:58:39,686           instead of `find_packages(...)`/`find:`).

2024-09-30T23:58:39,687           You can read more about "package discovery" on setuptools documentation page:

2024-09-30T23:58:39,688           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-09-30T23:58:39,689           If you don't want 'pub_worm.wormbase.data' to be distributed and are
2024-09-30T23:58:39,690           already explicitly excluding 'pub_worm.wormbase.data' via
2024-09-30T23:58:39,690           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-09-30T23:58:39,691           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-09-30T23:58:39,691           combination with a more fine grained `package-data` configuration.

2024-09-30T23:58:39,693           You can read more about "package data files" on setuptools documentation page:

2024-09-30T23:58:39,694           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-09-30T23:58:39,695           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-09-30T23:58:39,695                 even if it does not contain any `.py` files.
2024-09-30T23:58:39,696                 On the other hand, currently there is no concept of package data
2024-09-30T23:58:39,696                 directory, all directories are treated like packages.
2024-09-30T23:58:39,696           ********************************************************************************

2024-09-30T23:58:39,697   !!
2024-09-30T23:58:39,698     check.warn(importable)
2024-09-30T23:58:39,698   creating build/lib/pub_worm/impact_factor/data
2024-09-30T23:58:39,699   copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data
2024-09-30T23:58:39,699   creating build/lib/pub_worm/wormbase/data
2024-09-30T23:58:39,700   copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data
2024-09-30T23:58:39,700   copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data
2024-09-30T23:58:39,701   copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data
2024-09-30T23:58:39,719   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-09-30T23:58:39,720   !!

2024-09-30T23:58:39,721           ********************************************************************************
2024-09-30T23:58:39,721           Please avoid running ``setup.py`` directly.
2024-09-30T23:58:39,722           Instead, use pypa/build, pypa/installer or other
2024-09-30T23:58:39,722           standards-based tools.

2024-09-30T23:58:39,723           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-09-30T23:58:39,724           ********************************************************************************

2024-09-30T23:58:39,725   !!
2024-09-30T23:58:39,726     self.initialize_options()
2024-09-30T23:58:39,746   installing to build/bdist.linux-armv7l/wheel
2024-09-30T23:58:39,747   running install
2024-09-30T23:58:39,772   running install_lib
2024-09-30T23:58:39,798   creating build/bdist.linux-armv7l/wheel
2024-09-30T23:58:39,800   creating build/bdist.linux-armv7l/wheel/tests
2024-09-30T23:58:39,802   creating build/bdist.linux-armv7l/wheel/tests/impact_factor
2024-09-30T23:58:39,803   copying build/lib/tests/impact_factor/test_get_impact_factor.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor
2024-09-30T23:58:39,805   copying build/lib/tests/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor
2024-09-30T23:58:39,807   creating build/bdist.linux-armv7l/wheel/tests/orcid
2024-09-30T23:58:39,808   copying build/lib/tests/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/orcid
2024-09-30T23:58:39,815   copying build/lib/tests/orcid/test_orcid_api.py -> build/bdist.linux-armv7l/wheel/./tests/orcid
2024-09-30T23:58:39,817   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests
2024-09-30T23:58:39,819   creating build/bdist.linux-armv7l/wheel/tests/ncbi
2024-09-30T23:58:39,821   copying build/lib/tests/ncbi/test_entreze_api.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi
2024-09-30T23:58:39,823   copying build/lib/tests/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi
2024-09-30T23:58:39,825   creating build/bdist.linux-armv7l/wheel/tests/wormbase
2024-09-30T23:58:39,826   copying build/lib/tests/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase
2024-09-30T23:58:39,828   copying build/lib/tests/wormbase/test_wormbase_api.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase
2024-09-30T23:58:39,830   creating build/bdist.linux-armv7l/wheel/pub_worm
2024-09-30T23:58:39,832   creating build/bdist.linux-armv7l/wheel/pub_worm/ensembl
2024-09-30T23:58:39,833   copying build/lib/pub_worm/ensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl
2024-09-30T23:58:39,835   copying build/lib/pub_worm/ensembl/ensembl_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl
2024-09-30T23:58:39,837   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor
2024-09-30T23:58:39,839   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data
2024-09-30T23:58:39,840   copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor/data
2024-09-30T23:58:39,864   copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor
2024-09-30T23:58:39,865   copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor
2024-09-30T23:58:39,868   creating build/bdist.linux-armv7l/wheel/pub_worm/orcid
2024-09-30T23:58:39,869   copying build/lib/pub_worm/orcid/orcid_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid
2024-09-30T23:58:39,871   copying build/lib/pub_worm/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid
2024-09-30T23:58:39,872   copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm
2024-09-30T23:58:39,874   creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-09-30T23:58:39,875   copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi
2024-09-30T23:58:39,877   copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi
2024-09-30T23:58:39,880   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-09-30T23:58:39,881   copying build/lib/pub_worm/wormbase/wormbase_util.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-09-30T23:58:39,883   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-09-30T23:58:39,884   copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-09-30T23:58:39,886   copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-09-30T23:58:39,888   copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-09-30T23:58:39,890   copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-09-30T23:58:39,892   copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-09-30T23:58:39,894   copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-09-30T23:58:39,896   running install_egg_info
2024-09-30T23:58:39,930   Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/./pub_worm-0.3.2-py3.11.egg-info
2024-09-30T23:58:39,943   running install_scripts
2024-09-30T23:58:39,954   creating build/bdist.linux-armv7l/wheel/pub_worm-0.3.2.dist-info/WHEEL
2024-09-30T23:58:39,957   creating '/tmp/pip-wheel-bfo0_kg3/pub_worm-0.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-09-30T23:58:39,959   adding 'pub_worm/__init__.py'
2024-09-30T23:58:39,961   adding 'pub_worm/ensembl/__init__.py'
2024-09-30T23:58:39,963   adding 'pub_worm/ensembl/ensembl_api.py'
2024-09-30T23:58:39,964   adding 'pub_worm/impact_factor/__init__.py'
2024-09-30T23:58:39,966   adding 'pub_worm/impact_factor/impact_factor_lookup.py'
2024-09-30T23:58:40,131   adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv'
2024-09-30T23:58:40,141   adding 'pub_worm/ncbi/__init__.py'
2024-09-30T23:58:40,144   adding 'pub_worm/ncbi/entreze_api.py'
2024-09-30T23:58:40,145   adding 'pub_worm/orcid/__init__.py'
2024-09-30T23:58:40,147   adding 'pub_worm/orcid/orcid_api.py'
2024-09-30T23:58:40,148   adding 'pub_worm/wormbase/__init__.py'
2024-09-30T23:58:40,150   adding 'pub_worm/wormbase/to_csv_helpers.py'
2024-09-30T23:58:40,152   adding 'pub_worm/wormbase/wormbase_api.py'
2024-09-30T23:58:40,153   adding 'pub_worm/wormbase/wormbase_util.py'
2024-09-30T23:58:40,155   adding 'pub_worm/wormbase/data/wormbase_field_gene.json'
2024-09-30T23:58:40,156   adding 'pub_worm/wormbase/data/wormbase_field_paper.json'
2024-09-30T23:58:40,157   adding 'pub_worm/wormbase/data/wormbase_widget_gene.json'
2024-09-30T23:58:40,159   adding 'tests/__init__.py'
2024-09-30T23:58:40,160   adding 'tests/impact_factor/__init__.py'
2024-09-30T23:58:40,162   adding 'tests/impact_factor/test_get_impact_factor.py'
2024-09-30T23:58:40,163   adding 'tests/ncbi/__init__.py'
2024-09-30T23:58:40,164   adding 'tests/ncbi/test_entreze_api.py'
2024-09-30T23:58:40,166   adding 'tests/orcid/__init__.py'
2024-09-30T23:58:40,167   adding 'tests/orcid/test_orcid_api.py'
2024-09-30T23:58:40,169   adding 'tests/wormbase/__init__.py'
2024-09-30T23:58:40,170   adding 'tests/wormbase/test_wormbase_api.py'
2024-09-30T23:58:40,171   adding 'pub_worm-0.3.2.dist-info/METADATA'
2024-09-30T23:58:40,172   adding 'pub_worm-0.3.2.dist-info/WHEEL'
2024-09-30T23:58:40,173   adding 'pub_worm-0.3.2.dist-info/top_level.txt'
2024-09-30T23:58:40,174   adding 'pub_worm-0.3.2.dist-info/RECORD'
2024-09-30T23:58:40,180   removing build/bdist.linux-armv7l/wheel
2024-09-30T23:58:40,306   Building wheel for pub-worm (setup.py): finished with status 'done'
2024-09-30T23:58:40,313   Created wheel for pub-worm: filename=pub_worm-0.3.2-py3-none-any.whl size=400580 sha256=8eb0af1a82d51754cf91c35469d2c0e3a47cee05f6570bd5c1fa918b9b457830
2024-09-30T23:58:40,314   Stored in directory: /tmp/pip-ephem-wheel-cache-8kr2d6z9/wheels/11/18/9c/fd570f4c3a8d229cc61a8e4fdba5c2d36478b3a797dc2b88e9
2024-09-30T23:58:40,324 Successfully built pub-worm
2024-09-30T23:58:40,339 Removed build tracker: '/tmp/pip-build-tracker-mpju9zww'