2024-10-01T12:59:17,982 Created temporary directory: /tmp/pip-build-tracker-6f9qe30m
2024-10-01T12:59:17,984 Initialized build tracking at /tmp/pip-build-tracker-6f9qe30m
2024-10-01T12:59:17,984 Created build tracker: /tmp/pip-build-tracker-6f9qe30m
2024-10-01T12:59:17,985 Entered build tracker: /tmp/pip-build-tracker-6f9qe30m
2024-10-01T12:59:17,985 Created temporary directory: /tmp/pip-wheel-9sadh49y
2024-10-01T12:59:17,989 Created temporary directory: /tmp/pip-ephem-wheel-cache-6galod9x
2024-10-01T12:59:18,032 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-10-01T12:59:18,035 2 location(s) to search for versions of pub-worm:
2024-10-01T12:59:18,035 * https://pypi.org/simple/pub-worm/
2024-10-01T12:59:18,035 * https://www.piwheels.org/simple/pub-worm/
2024-10-01T12:59:18,036 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/
2024-10-01T12:59:18,036 Getting page https://pypi.org/simple/pub-worm/
2024-10-01T12:59:18,038 Found index url https://pypi.org/simple/
2024-10-01T12:59:18,263 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json
2024-10-01T12:59:18,268   Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1
2024-10-01T12:59:18,269   Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1
2024-10-01T12:59:18,269   Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2
2024-10-01T12:59:18,270   Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3
2024-10-01T12:59:18,271   Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4
2024-10-01T12:59:18,271   Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5
2024-10-01T12:59:18,272   Found link https://files.pythonhosted.org/packages/80/a0/1ce94f51ef16d83a09dea4f1985b068452c7880801597bd3eb82efd056fc/pub_worm-0.1.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.6
2024-10-01T12:59:18,273   Found link https://files.pythonhosted.org/packages/a3/21/a1cd9d1377b513ca7bb426346eb849aa4c84f3b3a3e1d80c0c7b05585d92/pub_worm-0.1.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.7
2024-10-01T12:59:18,274   Found link https://files.pythonhosted.org/packages/8f/fc/a0c2da18b286317e2843459c01336317cfeaa46efe28b278201968d1176d/pub_worm-0.1.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.8
2024-10-01T12:59:18,274   Found link https://files.pythonhosted.org/packages/05/8b/338f3714f1fa9c96e6eb4161453ee1686e7e852c3e568f53de43d9181cba/pub_worm-0.1.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.9
2024-10-01T12:59:18,275   Found link https://files.pythonhosted.org/packages/97/77/c5713bb989282f6cc978673a6444be453c991049862f200a583aae8061de/pub_worm-0.2.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.0
2024-10-01T12:59:18,276   Found link https://files.pythonhosted.org/packages/ba/54/2d9a593a5d99fea472983a809a8764698e89d7e9336eb4dece805bb685d1/pub_worm-0.2.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.1
2024-10-01T12:59:18,277   Found link https://files.pythonhosted.org/packages/da/24/bc0ded99393b36c2a10169df8df556b1ffa4efbcb6cc88c6d0d1245a4490/pub_worm-0.2.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.2
2024-10-01T12:59:18,278   Found link https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.3
2024-10-01T12:59:18,278   Found link https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.4
2024-10-01T12:59:18,279   Found link https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.5
2024-10-01T12:59:18,280   Found link https://files.pythonhosted.org/packages/7d/07/f0b969d2ecfe9daa5682c4565ed168d28aa1e45dff044a102bdb549c2cba/pub_worm-0.2.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.6
2024-10-01T12:59:18,280   Found link https://files.pythonhosted.org/packages/f5/e4/6c2a317ea14ff7acce17ad7087f4937e860cb48d28976812e19191e544e5/pub_worm-0.2.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.7
2024-10-01T12:59:18,281   Found link https://files.pythonhosted.org/packages/51/40/51943d1557acd97d0bd3c5e4ea9131e52649895cce775d41150299780858/pub_worm-0.2.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.8
2024-10-01T12:59:18,282   Found link https://files.pythonhosted.org/packages/96/9b/59b37b2341e80821c39f248138f73e554aa06b6ab437d44aca25ec803725/pub_worm-0.2.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.9
2024-10-01T12:59:18,282   Found link https://files.pythonhosted.org/packages/6a/ca/c5f05833b54c4ddb2b8d70e1c3e9631b195d28c7dc92cfbbd22d539d9f0e/pub_worm-0.3.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.0
2024-10-01T12:59:18,283   Found link https://files.pythonhosted.org/packages/85/d9/83a18281c7792db68fb6f9af515e5a50b5235c2d9816586d522060be97a7/pub_worm-0.3.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.1
2024-10-01T12:59:18,283   Found link https://files.pythonhosted.org/packages/d6/ea/750af1e220e8ea7ca825e574c5f8485c82cebc05826882f736e492d11d4a/pub_worm-0.3.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.2
2024-10-01T12:59:18,284   Found link https://files.pythonhosted.org/packages/8a/b9/75cdcce68e88b56c29aacadd8cc4229c649b54f1e2ec77582527997599ce/pub_worm-0.3.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.3
2024-10-01T12:59:18,285 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/
2024-10-01T12:59:18,286 Getting page https://www.piwheels.org/simple/pub-worm/
2024-10-01T12:59:18,287 Found index url https://www.piwheels.org/simple/
2024-10-01T12:59:18,450 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html
2024-10-01T12:59:18,457   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.2-py3-none-any.whl#sha256=8eb0af1a82d51754cf91c35469d2c0e3a47cee05f6570bd5c1fa918b9b457830 (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,457   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.1-py3-none-any.whl#sha256=99d9dcd7ed7ebda453e569930ae75ceab3b9c7c8eeee77028acdd9c83809f0f3 (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,458   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.0-py3-none-any.whl#sha256=25de0e60cf04e1f2361dafa06cd0ccc77faf62f68e246eb8e83301e354d9150a (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,458   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.9-py3-none-any.whl#sha256=0b5f756b21fa4c17fbed60801bd4dbc1fc1952ed843281a527c88d757d65485b (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,459   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.8-py3-none-any.whl#sha256=e38f0cefa270a92d5580a1df80252ec5a567937089f35923ee2f8fbaa4bab037 (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,460   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.7-py3-none-any.whl#sha256=17c8216479e7796ddea333f1eccbc02c3362a728668da69bbf9e12b0239a9c8f (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,460   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.6-py3-none-any.whl#sha256=79f23813bcf27f437dd33b20d97761a1124ac1aa5aa80ff78557d4a6d78d0ff4 (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,461   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.5-py3-none-any.whl#sha256=6372364213ad9038155851d20d7145b7fa44b8664abf2d718da4c2377fc3b56e (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,461   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.4-py3-none-any.whl#sha256=d426fb6e260eb1588f75b25281a6d726d740a9c88f34e8ffd0f0bbcd1e98acbc (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,462   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.3-py3-none-any.whl#sha256=08bbce548fac3ce388fa51fdcbf0a4b59a27180b5871a37d0bf5ced9c84e903a (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,462   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.2-py3-none-any.whl#sha256=1f5f09a3598f66e5a30431d4c93cd6b581049d7829a791820ecb783ddad91c19 (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,463   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.1-py3-none-any.whl#sha256=2cd541418ccbf9158ab7e18b187c7d7bc297928fbb5f4817f84f67552fd20c2a (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,463   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.0-py3-none-any.whl#sha256=0fe4aa97fb602755d99717699395e7014f676d4ee4572930652a00f5b0407400 (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,464   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.9-py3-none-any.whl#sha256=d36153a6672446b80a3ad4a128123f60f80f8f1444122936363fa80165d19f7a (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,464   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.8-py3-none-any.whl#sha256=ad3c0117baeaa8c04f86149fa0dd71f6ea65d60213da6d6b570d0157572afe2c (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,465   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.7-py3-none-any.whl#sha256=5b88eaacc4effbdf9cc173c4732a2ac60eac0a420ccac19ba626a2be72b7f12a (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,466   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.6-py3-none-any.whl#sha256=b18fb87705630077e0c3647f52c14b61e3b0ced91b1628a96bd5406c384f38ea (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,466   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.5-py3-none-any.whl#sha256=194f3e97c1023b9ba1e3ada69ff1de5c0883d9bf2e6c11d2b6173cf86f7d23ec (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,467   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.4-py3-none-any.whl#sha256=84de546e9b8e73c3cdbccb497a05d28c60537eda48d1b1fdb879be94e3fe3f27 (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,467   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.3-py3-none-any.whl#sha256=c93d251f88dea0862a7a5878ea9d242ca2a3dfc38922c876268f91def0e576c1 (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,468   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.2-py3-none-any.whl#sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,469   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,470   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/)
2024-10-01T12:59:18,470 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/
2024-10-01T12:59:18,471 Skipping link: not a file: https://pypi.org/simple/pub-worm/
2024-10-01T12:59:18,491 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates
2024-10-01T12:59:18,492 Collecting pub-worm==0.3.3
2024-10-01T12:59:18,495   Created temporary directory: /tmp/pip-unpack-y1bqqbny
2024-10-01T12:59:18,709   Downloading pub_worm-0.3.3.tar.gz (395 kB)
2024-10-01T12:59:18,915   Added pub-worm==0.3.3 from https://files.pythonhosted.org/packages/8a/b9/75cdcce68e88b56c29aacadd8cc4229c649b54f1e2ec77582527997599ce/pub_worm-0.3.3.tar.gz to build tracker '/tmp/pip-build-tracker-6f9qe30m'
2024-10-01T12:59:18,917   Running setup.py (path:/tmp/pip-wheel-9sadh49y/pub-worm_8f83be2a93b848b6ba51d094a24f0f23/setup.py) egg_info for package pub-worm
2024-10-01T12:59:18,918   Created temporary directory: /tmp/pip-pip-egg-info-rowzotj_
2024-10-01T12:59:18,918   Preparing metadata (setup.py): started
2024-10-01T12:59:18,920   Running command python setup.py egg_info
2024-10-01T12:59:20,047   running egg_info
2024-10-01T12:59:20,048   creating /tmp/pip-pip-egg-info-rowzotj_/pub_worm.egg-info
2024-10-01T12:59:20,075   writing /tmp/pip-pip-egg-info-rowzotj_/pub_worm.egg-info/PKG-INFO
2024-10-01T12:59:20,079   writing dependency_links to /tmp/pip-pip-egg-info-rowzotj_/pub_worm.egg-info/dependency_links.txt
2024-10-01T12:59:20,081   writing requirements to /tmp/pip-pip-egg-info-rowzotj_/pub_worm.egg-info/requires.txt
2024-10-01T12:59:20,082   writing top-level names to /tmp/pip-pip-egg-info-rowzotj_/pub_worm.egg-info/top_level.txt
2024-10-01T12:59:20,083   writing manifest file '/tmp/pip-pip-egg-info-rowzotj_/pub_worm.egg-info/SOURCES.txt'
2024-10-01T12:59:20,181   reading manifest file '/tmp/pip-pip-egg-info-rowzotj_/pub_worm.egg-info/SOURCES.txt'
2024-10-01T12:59:20,183   reading manifest template 'MANIFEST.in'
2024-10-01T12:59:20,185   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-10-01T12:59:20,185   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-10-01T12:59:20,186   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-10-01T12:59:20,188   writing manifest file '/tmp/pip-pip-egg-info-rowzotj_/pub_worm.egg-info/SOURCES.txt'
2024-10-01T12:59:20,298   Preparing metadata (setup.py): finished with status 'done'
2024-10-01T12:59:20,302   Source in /tmp/pip-wheel-9sadh49y/pub-worm_8f83be2a93b848b6ba51d094a24f0f23 has version 0.3.3, which satisfies requirement pub-worm==0.3.3 from https://files.pythonhosted.org/packages/8a/b9/75cdcce68e88b56c29aacadd8cc4229c649b54f1e2ec77582527997599ce/pub_worm-0.3.3.tar.gz
2024-10-01T12:59:20,303   Removed pub-worm==0.3.3 from https://files.pythonhosted.org/packages/8a/b9/75cdcce68e88b56c29aacadd8cc4229c649b54f1e2ec77582527997599ce/pub_worm-0.3.3.tar.gz from build tracker '/tmp/pip-build-tracker-6f9qe30m'
2024-10-01T12:59:20,308 Created temporary directory: /tmp/pip-unpack-fkcjvn06
2024-10-01T12:59:20,309 Created temporary directory: /tmp/pip-unpack-nh9liydn
2024-10-01T12:59:20,310 Building wheels for collected packages: pub-worm
2024-10-01T12:59:20,314   Created temporary directory: /tmp/pip-wheel-tb1t0aoz
2024-10-01T12:59:20,315   Building wheel for pub-worm (setup.py): started
2024-10-01T12:59:20,316   Destination directory: /tmp/pip-wheel-tb1t0aoz
2024-10-01T12:59:20,317   Running command python setup.py bdist_wheel
2024-10-01T12:59:21,329   running bdist_wheel
2024-10-01T12:59:21,458   running build
2024-10-01T12:59:21,459   running build_py
2024-10-01T12:59:21,488   creating build/lib/pub_worm
2024-10-01T12:59:21,490   copying pub_worm/__init__.py -> build/lib/pub_worm
2024-10-01T12:59:21,492   creating build/lib/tests
2024-10-01T12:59:21,493   copying tests/__init__.py -> build/lib/tests
2024-10-01T12:59:21,495   creating build/lib/pub_worm/ensembl
2024-10-01T12:59:21,496   copying pub_worm/ensembl/ensembl_api.py -> build/lib/pub_worm/ensembl
2024-10-01T12:59:21,498   copying pub_worm/ensembl/__init__.py -> build/lib/pub_worm/ensembl
2024-10-01T12:59:21,500   creating build/lib/pub_worm/wormbase
2024-10-01T12:59:21,501   copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase
2024-10-01T12:59:21,504   copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase
2024-10-01T12:59:21,506   copying pub_worm/wormbase/wormbase_util.py -> build/lib/pub_worm/wormbase
2024-10-01T12:59:21,508   copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase
2024-10-01T12:59:21,510   creating build/lib/pub_worm/impact_factor
2024-10-01T12:59:21,511   copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor
2024-10-01T12:59:21,513   copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor
2024-10-01T12:59:21,515   creating build/lib/pub_worm/orcid
2024-10-01T12:59:21,516   copying pub_worm/orcid/orcid_api.py -> build/lib/pub_worm/orcid
2024-10-01T12:59:21,519   copying pub_worm/orcid/__init__.py -> build/lib/pub_worm/orcid
2024-10-01T12:59:21,521   creating build/lib/pub_worm/ncbi
2024-10-01T12:59:21,522   copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi
2024-10-01T12:59:21,525   copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi
2024-10-01T12:59:21,527   creating build/lib/tests/wormbase
2024-10-01T12:59:21,528   copying tests/wormbase/test_wormbase_api.py -> build/lib/tests/wormbase
2024-10-01T12:59:21,530   copying tests/wormbase/__init__.py -> build/lib/tests/wormbase
2024-10-01T12:59:21,532   creating build/lib/tests/impact_factor
2024-10-01T12:59:21,533   copying tests/impact_factor/test_get_impact_factor.py -> build/lib/tests/impact_factor
2024-10-01T12:59:21,535   copying tests/impact_factor/__init__.py -> build/lib/tests/impact_factor
2024-10-01T12:59:21,537   creating build/lib/tests/orcid
2024-10-01T12:59:21,538   copying tests/orcid/test_orcid_api.py -> build/lib/tests/orcid
2024-10-01T12:59:21,539   copying tests/orcid/__init__.py -> build/lib/tests/orcid
2024-10-01T12:59:21,541   creating build/lib/tests/ncbi
2024-10-01T12:59:21,545   copying tests/ncbi/test_entreze_api.py -> build/lib/tests/ncbi
2024-10-01T12:59:21,548   copying tests/ncbi/__init__.py -> build/lib/tests/ncbi
2024-10-01T12:59:21,549   running egg_info
2024-10-01T12:59:21,576   writing pub_worm.egg-info/PKG-INFO
2024-10-01T12:59:21,579   writing dependency_links to pub_worm.egg-info/dependency_links.txt
2024-10-01T12:59:21,581   writing requirements to pub_worm.egg-info/requires.txt
2024-10-01T12:59:21,582   writing top-level names to pub_worm.egg-info/top_level.txt
2024-10-01T12:59:21,619   reading manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-10-01T12:59:21,625   reading manifest template 'MANIFEST.in'
2024-10-01T12:59:21,626   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-10-01T12:59:21,627   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-10-01T12:59:21,628   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-10-01T12:59:21,631   writing manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-10-01T12:59:21,633   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration.
2024-10-01T12:59:21,634   !!

2024-10-01T12:59:21,635           ********************************************************************************
2024-10-01T12:59:21,636           ############################
2024-10-01T12:59:21,637           # Package would be ignored #
2024-10-01T12:59:21,637           ############################
2024-10-01T12:59:21,637           Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1],
2024-10-01T12:59:21,638           but it is absent from setuptools' `packages` configuration.

2024-10-01T12:59:21,639           This leads to an ambiguous overall configuration. If you want to distribute this
2024-10-01T12:59:21,639           package, please make sure that 'pub_worm.impact_factor.data' is explicitly added
2024-10-01T12:59:21,639           to the `packages` configuration field.

2024-10-01T12:59:21,641           Alternatively, you can also rely on setuptools' discovery methods
2024-10-01T12:59:21,641           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-10-01T12:59:21,641           instead of `find_packages(...)`/`find:`).

2024-10-01T12:59:21,642           You can read more about "package discovery" on setuptools documentation page:

2024-10-01T12:59:21,643           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-10-01T12:59:21,645           If you don't want 'pub_worm.impact_factor.data' to be distributed and are
2024-10-01T12:59:21,645           already explicitly excluding 'pub_worm.impact_factor.data' via
2024-10-01T12:59:21,646           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-10-01T12:59:21,646           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-10-01T12:59:21,647           combination with a more fine grained `package-data` configuration.

2024-10-01T12:59:21,648           You can read more about "package data files" on setuptools documentation page:

2024-10-01T12:59:21,649           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-10-01T12:59:21,650           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-10-01T12:59:21,651                 even if it does not contain any `.py` files.
2024-10-01T12:59:21,652                 On the other hand, currently there is no concept of package data
2024-10-01T12:59:21,652                 directory, all directories are treated like packages.
2024-10-01T12:59:21,653           ********************************************************************************

2024-10-01T12:59:21,654   !!
2024-10-01T12:59:21,655     check.warn(importable)
2024-10-01T12:59:21,655   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration.
2024-10-01T12:59:21,656   !!

2024-10-01T12:59:21,660           ********************************************************************************
2024-10-01T12:59:21,668           ############################
2024-10-01T12:59:21,676           # Package would be ignored #
2024-10-01T12:59:21,677           ############################
2024-10-01T12:59:21,678           Python recognizes 'pub_worm.wormbase.data' as an importable package[^1],
2024-10-01T12:59:21,678           but it is absent from setuptools' `packages` configuration.

2024-10-01T12:59:21,679           This leads to an ambiguous overall configuration. If you want to distribute this
2024-10-01T12:59:21,680           package, please make sure that 'pub_worm.wormbase.data' is explicitly added
2024-10-01T12:59:21,681           to the `packages` configuration field.

2024-10-01T12:59:21,682           Alternatively, you can also rely on setuptools' discovery methods
2024-10-01T12:59:21,683           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-10-01T12:59:21,683           instead of `find_packages(...)`/`find:`).

2024-10-01T12:59:21,685           You can read more about "package discovery" on setuptools documentation page:

2024-10-01T12:59:21,687           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-10-01T12:59:21,688           If you don't want 'pub_worm.wormbase.data' to be distributed and are
2024-10-01T12:59:21,688           already explicitly excluding 'pub_worm.wormbase.data' via
2024-10-01T12:59:21,689           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-10-01T12:59:21,689           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-10-01T12:59:21,689           combination with a more fine grained `package-data` configuration.

2024-10-01T12:59:21,690           You can read more about "package data files" on setuptools documentation page:

2024-10-01T12:59:21,691           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-10-01T12:59:21,693           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-10-01T12:59:21,693                 even if it does not contain any `.py` files.
2024-10-01T12:59:21,694                 On the other hand, currently there is no concept of package data
2024-10-01T12:59:21,694                 directory, all directories are treated like packages.
2024-10-01T12:59:21,695           ********************************************************************************

2024-10-01T12:59:21,696   !!
2024-10-01T12:59:21,696     check.warn(importable)
2024-10-01T12:59:21,697   creating build/lib/pub_worm/wormbase/data
2024-10-01T12:59:21,697   copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data
2024-10-01T12:59:21,698   copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data
2024-10-01T12:59:21,698   copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data
2024-10-01T12:59:21,699   creating build/lib/pub_worm/impact_factor/data
2024-10-01T12:59:21,699   copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data
2024-10-01T12:59:21,715   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-10-01T12:59:21,716   !!

2024-10-01T12:59:21,717           ********************************************************************************
2024-10-01T12:59:21,718           Please avoid running ``setup.py`` directly.
2024-10-01T12:59:21,718           Instead, use pypa/build, pypa/installer or other
2024-10-01T12:59:21,719           standards-based tools.

2024-10-01T12:59:21,720           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-10-01T12:59:21,721           ********************************************************************************

2024-10-01T12:59:21,722   !!
2024-10-01T12:59:21,723     self.initialize_options()
2024-10-01T12:59:21,742   installing to build/bdist.linux-armv7l/wheel
2024-10-01T12:59:21,743   running install
2024-10-01T12:59:21,767   running install_lib
2024-10-01T12:59:21,793   creating build/bdist.linux-armv7l/wheel
2024-10-01T12:59:21,795   creating build/bdist.linux-armv7l/wheel/pub_worm
2024-10-01T12:59:21,797   creating build/bdist.linux-armv7l/wheel/pub_worm/ensembl
2024-10-01T12:59:21,798   copying build/lib/pub_worm/ensembl/ensembl_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl
2024-10-01T12:59:21,801   copying build/lib/pub_worm/ensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl
2024-10-01T12:59:21,803   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-10-01T12:59:21,804   copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-10-01T12:59:21,807   copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-10-01T12:59:21,808   copying build/lib/pub_worm/wormbase/wormbase_util.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-10-01T12:59:21,811   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-10-01T12:59:21,812   copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-10-01T12:59:21,814   copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-10-01T12:59:21,816   copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-10-01T12:59:21,818   copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-10-01T12:59:21,820   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor
2024-10-01T12:59:21,825   copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor
2024-10-01T12:59:21,827   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data
2024-10-01T12:59:21,828   copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor/data
2024-10-01T12:59:21,853   copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor
2024-10-01T12:59:21,856   creating build/bdist.linux-armv7l/wheel/pub_worm/orcid
2024-10-01T12:59:21,857   copying build/lib/pub_worm/orcid/orcid_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid
2024-10-01T12:59:21,859   copying build/lib/pub_worm/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid
2024-10-01T12:59:21,861   creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-10-01T12:59:21,862   copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi
2024-10-01T12:59:21,865   copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi
2024-10-01T12:59:21,867   copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm
2024-10-01T12:59:21,869   creating build/bdist.linux-armv7l/wheel/tests
2024-10-01T12:59:21,871   creating build/bdist.linux-armv7l/wheel/tests/wormbase
2024-10-01T12:59:21,872   copying build/lib/tests/wormbase/test_wormbase_api.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase
2024-10-01T12:59:21,875   copying build/lib/tests/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase
2024-10-01T12:59:21,877   creating build/bdist.linux-armv7l/wheel/tests/impact_factor
2024-10-01T12:59:21,879   copying build/lib/tests/impact_factor/test_get_impact_factor.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor
2024-10-01T12:59:21,881   copying build/lib/tests/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor
2024-10-01T12:59:21,884   creating build/bdist.linux-armv7l/wheel/tests/orcid
2024-10-01T12:59:21,885   copying build/lib/tests/orcid/test_orcid_api.py -> build/bdist.linux-armv7l/wheel/./tests/orcid
2024-10-01T12:59:21,888   copying build/lib/tests/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/orcid
2024-10-01T12:59:21,890   creating build/bdist.linux-armv7l/wheel/tests/ncbi
2024-10-01T12:59:21,891   copying build/lib/tests/ncbi/test_entreze_api.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi
2024-10-01T12:59:21,894   copying build/lib/tests/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi
2024-10-01T12:59:21,896   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests
2024-10-01T12:59:21,897   running install_egg_info
2024-10-01T12:59:21,932   Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/./pub_worm-0.3.3-py3.11.egg-info
2024-10-01T12:59:21,943   running install_scripts
2024-10-01T12:59:21,954   creating build/bdist.linux-armv7l/wheel/pub_worm-0.3.3.dist-info/WHEEL
2024-10-01T12:59:21,957   creating '/tmp/pip-wheel-tb1t0aoz/pub_worm-0.3.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-10-01T12:59:21,959   adding 'pub_worm/__init__.py'
2024-10-01T12:59:21,961   adding 'pub_worm/ensembl/__init__.py'
2024-10-01T12:59:21,963   adding 'pub_worm/ensembl/ensembl_api.py'
2024-10-01T12:59:21,965   adding 'pub_worm/impact_factor/__init__.py'
2024-10-01T12:59:21,967   adding 'pub_worm/impact_factor/impact_factor_lookup.py'
2024-10-01T12:59:22,160   adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv'
2024-10-01T12:59:22,178   adding 'pub_worm/ncbi/__init__.py'
2024-10-01T12:59:22,182   adding 'pub_worm/ncbi/entreze_api.py'
2024-10-01T12:59:22,185   adding 'pub_worm/orcid/__init__.py'
2024-10-01T12:59:22,187   adding 'pub_worm/orcid/orcid_api.py'
2024-10-01T12:59:22,190   adding 'pub_worm/wormbase/__init__.py'
2024-10-01T12:59:22,192   adding 'pub_worm/wormbase/to_csv_helpers.py'
2024-10-01T12:59:22,194   adding 'pub_worm/wormbase/wormbase_api.py'
2024-10-01T12:59:22,196   adding 'pub_worm/wormbase/wormbase_util.py'
2024-10-01T12:59:22,198   adding 'pub_worm/wormbase/data/wormbase_field_gene.json'
2024-10-01T12:59:22,199   adding 'pub_worm/wormbase/data/wormbase_field_paper.json'
2024-10-01T12:59:22,201   adding 'pub_worm/wormbase/data/wormbase_widget_gene.json'
2024-10-01T12:59:22,203   adding 'tests/__init__.py'
2024-10-01T12:59:22,205   adding 'tests/impact_factor/__init__.py'
2024-10-01T12:59:22,206   adding 'tests/impact_factor/test_get_impact_factor.py'
2024-10-01T12:59:22,208   adding 'tests/ncbi/__init__.py'
2024-10-01T12:59:22,210   adding 'tests/ncbi/test_entreze_api.py'
2024-10-01T12:59:22,212   adding 'tests/orcid/__init__.py'
2024-10-01T12:59:22,213   adding 'tests/orcid/test_orcid_api.py'
2024-10-01T12:59:22,215   adding 'tests/wormbase/__init__.py'
2024-10-01T12:59:22,217   adding 'tests/wormbase/test_wormbase_api.py'
2024-10-01T12:59:22,218   adding 'pub_worm-0.3.3.dist-info/METADATA'
2024-10-01T12:59:22,220   adding 'pub_worm-0.3.3.dist-info/WHEEL'
2024-10-01T12:59:22,221   adding 'pub_worm-0.3.3.dist-info/top_level.txt'
2024-10-01T12:59:22,222   adding 'pub_worm-0.3.3.dist-info/RECORD'
2024-10-01T12:59:22,228   removing build/bdist.linux-armv7l/wheel
2024-10-01T12:59:22,354   Building wheel for pub-worm (setup.py): finished with status 'done'
2024-10-01T12:59:22,361   Created wheel for pub-worm: filename=pub_worm-0.3.3-py3-none-any.whl size=401004 sha256=da0d3ca0a782da9c6b12ec10ee6368664cb5c3c4fb652d55ac5ea0de063f95c0
2024-10-01T12:59:22,362   Stored in directory: /tmp/pip-ephem-wheel-cache-6galod9x/wheels/91/3b/b6/2fdfa0d567e940a924ce426fe051a62e111961d6a4e6ed566d
2024-10-01T12:59:22,373 Successfully built pub-worm
2024-10-01T12:59:22,386 Removed build tracker: '/tmp/pip-build-tracker-6f9qe30m'