2024-10-03T14:46:24,100 Created temporary directory: /tmp/pip-build-tracker-nzsqg_el 2024-10-03T14:46:24,101 Initialized build tracking at /tmp/pip-build-tracker-nzsqg_el 2024-10-03T14:46:24,101 Created build tracker: /tmp/pip-build-tracker-nzsqg_el 2024-10-03T14:46:24,102 Entered build tracker: /tmp/pip-build-tracker-nzsqg_el 2024-10-03T14:46:24,102 Created temporary directory: /tmp/pip-wheel-zse_jdva 2024-10-03T14:46:24,106 Created temporary directory: /tmp/pip-ephem-wheel-cache-6v36hz4d 2024-10-03T14:46:24,150 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-10-03T14:46:24,153 2 location(s) to search for versions of scipion-em-tomo3d: 2024-10-03T14:46:24,153 * https://pypi.org/simple/scipion-em-tomo3d/ 2024-10-03T14:46:24,153 * https://www.piwheels.org/simple/scipion-em-tomo3d/ 2024-10-03T14:46:24,154 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-tomo3d/ 2024-10-03T14:46:24,155 Getting page https://pypi.org/simple/scipion-em-tomo3d/ 2024-10-03T14:46:24,156 Found index url https://pypi.org/simple/ 2024-10-03T14:46:24,372 Fetched page https://pypi.org/simple/scipion-em-tomo3d/ as application/vnd.pypi.simple.v1+json 2024-10-03T14:46:24,375 Found link https://files.pythonhosted.org/packages/6e/7e/a68dc39919161191c35e9bcec3475f69740f49f8f8138499ccfddf0f5f0b/scipion-em-tomo3d-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.0 2024-10-03T14:46:24,376 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/cb/5b/aac5f9a318fe6bbb63e6ca8afd02528b2982f008a87129feefed6409bc31/scipion_em_tomo3d-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2024-10-03T14:46:24,376 Found link https://files.pythonhosted.org/packages/9d/4e/4ed2583cdc9b328f31ce35dac04e8dcf3a7e6c4c28cb5a2b8e3d0de28f66/scipion-em-tomo3d-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.1 2024-10-03T14:46:24,377 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/f8/4c/c4fe28e7ecff9521fe708df2b9de13ca97d1d03104a77a16b1240fdef7c1/scipion_em_tomo3d-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2024-10-03T14:46:24,378 Found link https://files.pythonhosted.org/packages/1b/47/7f33f0e4a4d8afc771f402c102cf3f2ef1f2034825afca65a1dbf940c0c3/scipion-em-tomo3d-3.1.2.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.2 2024-10-03T14:46:24,379 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/bb/d4/ec3e1c200ae6c204eca1fc45f208fb5d39bcfe64767475c5c33deb595424/scipion_em_tomo3d-3.1.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2024-10-03T14:46:24,379 Found link https://files.pythonhosted.org/packages/c3/b9/caa468dab576021ee73907b2fefc314818a02a8dc7d7c29c46f88812eb2b/scipion-em-tomo3d-3.1.3.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.3 2024-10-03T14:46:24,380 Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/a1/2d/498a056cfcef0ec4b0c77e469a946d6b622d92e3b50bc21d799d5dc173b7/scipion_em_tomo3d-3.1.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/) 2024-10-03T14:46:24,381 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-tomo3d/ 2024-10-03T14:46:24,381 Getting page https://www.piwheels.org/simple/scipion-em-tomo3d/ 2024-10-03T14:46:24,383 Found index url https://www.piwheels.org/simple/ 2024-10-03T14:46:24,551 Fetched page https://www.piwheels.org/simple/scipion-em-tomo3d/ as text/html 2024-10-03T14:46:24,553 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-tomo3d/ 2024-10-03T14:46:24,553 Skipping link: not a file: https://pypi.org/simple/scipion-em-tomo3d/ 2024-10-03T14:46:24,573 Given no hashes to check 1 links for project 'scipion-em-tomo3d': discarding no candidates 2024-10-03T14:46:24,574 Collecting scipion-em-tomo3d==3.1.3 2024-10-03T14:46:24,577 Created temporary directory: /tmp/pip-unpack-zaz_a6bp 2024-10-03T14:46:24,793 Downloading scipion-em-tomo3d-3.1.3.tar.gz (31 kB) 2024-10-03T14:46:24,866 Added scipion-em-tomo3d==3.1.3 from https://files.pythonhosted.org/packages/c3/b9/caa468dab576021ee73907b2fefc314818a02a8dc7d7c29c46f88812eb2b/scipion-em-tomo3d-3.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-nzsqg_el' 2024-10-03T14:46:24,868 Running setup.py (path:/tmp/pip-wheel-zse_jdva/scipion-em-tomo3d_52eecd0190b2452dbbd79aa550d1a38a/setup.py) egg_info for package scipion-em-tomo3d 2024-10-03T14:46:24,869 Created temporary directory: /tmp/pip-pip-egg-info-_k2wh88c 2024-10-03T14:46:24,869 Preparing metadata (setup.py): started 2024-10-03T14:46:24,871 Running command python setup.py egg_info 2024-10-03T14:46:25,328 Traceback (most recent call last): 2024-10-03T14:46:25,329 File "", line 2, in 2024-10-03T14:46:25,329 File "", line 34, in 2024-10-03T14:46:25,330 File "/tmp/pip-wheel-zse_jdva/scipion-em-tomo3d_52eecd0190b2452dbbd79aa550d1a38a/setup.py", line 13, in 2024-10-03T14:46:25,331 from tomo3d import __version__ 2024-10-03T14:46:25,332 File "/tmp/pip-wheel-zse_jdva/scipion-em-tomo3d_52eecd0190b2452dbbd79aa550d1a38a/tomo3d/__init__.py", line 31, in 2024-10-03T14:46:25,332 import pwem 2024-10-03T14:46:25,333 ModuleNotFoundError: No module named 'pwem' 2024-10-03T14:46:25,394 ERROR: python setup.py egg_info exited with 1 2024-10-03T14:46:25,407 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2024-10-03T14:46:25,407 exec(compile('"'"''"'"''"'"' 2024-10-03T14:46:25,407 # This is -- a caller that pip uses to run setup.py 2024-10-03T14:46:25,407 # 2024-10-03T14:46:25,407 # - It imports setuptools before invoking setup.py, to enable projects that directly 2024-10-03T14:46:25,407 # import from `distutils.core` to work with newer packaging standards. 2024-10-03T14:46:25,407 # - It provides a clear error message when setuptools is not installed. 2024-10-03T14:46:25,407 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2024-10-03T14:46:25,407 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2024-10-03T14:46:25,407 # manifest_maker: standard file '"'"'-c'"'"' not found". 2024-10-03T14:46:25,407 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2024-10-03T14:46:25,407 import os, sys, tokenize 2024-10-03T14:46:25,407 2024-10-03T14:46:25,407 try: 2024-10-03T14:46:25,407 import setuptools 2024-10-03T14:46:25,407 except ImportError as error: 2024-10-03T14:46:25,407 print( 2024-10-03T14:46:25,407 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2024-10-03T14:46:25,407 "the build environment.", 2024-10-03T14:46:25,407 file=sys.stderr, 2024-10-03T14:46:25,407 ) 2024-10-03T14:46:25,407 sys.exit(1) 2024-10-03T14:46:25,407 2024-10-03T14:46:25,407 __file__ = %r 2024-10-03T14:46:25,407 sys.argv[0] = __file__ 2024-10-03T14:46:25,407 2024-10-03T14:46:25,407 if os.path.exists(__file__): 2024-10-03T14:46:25,407 filename = __file__ 2024-10-03T14:46:25,407 with tokenize.open(__file__) as f: 2024-10-03T14:46:25,407 setup_py_code = f.read() 2024-10-03T14:46:25,407 else: 2024-10-03T14:46:25,407 filename = "" 2024-10-03T14:46:25,407 setup_py_code = "from setuptools import setup; setup()" 2024-10-03T14:46:25,407 2024-10-03T14:46:25,407 exec(compile(setup_py_code, filename, "exec")) 2024-10-03T14:46:25,407 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-zse_jdva/scipion-em-tomo3d_52eecd0190b2452dbbd79aa550d1a38a/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-_k2wh88c[/] 2024-10-03T14:46:25,408 [bold magenta]cwd[/]: /tmp/pip-wheel-zse_jdva/scipion-em-tomo3d_52eecd0190b2452dbbd79aa550d1a38a/ 2024-10-03T14:46:25,409 Preparing metadata (setup.py): finished with status 'error' 2024-10-03T14:46:25,410 ERROR: metadata generation failed 2024-10-03T14:46:25,416 Exception information: 2024-10-03T14:46:25,416 Traceback (most recent call last): 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2024-10-03T14:46:25,416 call_subprocess( 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2024-10-03T14:46:25,416 raise error 2024-10-03T14:46:25,416 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2024-10-03T14:46:25,416 2024-10-03T14:46:25,416 The above exception was the direct cause of the following exception: 2024-10-03T14:46:25,416 2024-10-03T14:46:25,416 Traceback (most recent call last): 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2024-10-03T14:46:25,416 status = _inner_run() 2024-10-03T14:46:25,416 ^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2024-10-03T14:46:25,416 return self.run(options, args) 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 67, in wrapper 2024-10-03T14:46:25,416 return func(self, options, args) 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2024-10-03T14:46:25,416 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 95, in resolve 2024-10-03T14:46:25,416 result = self._result = resolver.resolve( 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2024-10-03T14:46:25,416 state = resolution.resolve(requirements, max_rounds=max_rounds) 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2024-10-03T14:46:25,416 self._add_to_criteria(self.state.criteria, r, parent=None) 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2024-10-03T14:46:25,416 if not criterion.candidates: 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2024-10-03T14:46:25,416 return bool(self._sequence) 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 174, in __bool__ 2024-10-03T14:46:25,416 return any(self) 2024-10-03T14:46:25,416 ^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 162, in 2024-10-03T14:46:25,416 return (c for c in iterator if id(c) not in self._incompatible_ids) 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 53, in _iter_built 2024-10-03T14:46:25,416 candidate = func() 2024-10-03T14:46:25,416 ^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 186, in _make_candidate_from_link 2024-10-03T14:46:25,416 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 232, in _make_base_candidate_from_link 2024-10-03T14:46:25,416 self._link_candidate_cache[link] = LinkCandidate( 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 303, in __init__ 2024-10-03T14:46:25,416 super().__init__( 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 158, in __init__ 2024-10-03T14:46:25,416 self.dist = self._prepare() 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 235, in _prepare 2024-10-03T14:46:25,416 dist = self._prepare_distribution() 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 314, in _prepare_distribution 2024-10-03T14:46:25,416 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 527, in prepare_linked_requirement 2024-10-03T14:46:25,416 return self._prepare_linked_requirement(req, parallel_builds) 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 642, in _prepare_linked_requirement 2024-10-03T14:46:25,416 dist = _get_prepared_distribution( 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 72, in _get_prepared_distribution 2024-10-03T14:46:25,416 abstract_dist.prepare_distribution_metadata( 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2024-10-03T14:46:25,416 self.req.prepare_metadata() 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2024-10-03T14:46:25,416 self.metadata_directory = generate_metadata_legacy( 2024-10-03T14:46:25,416 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-03T14:46:25,416 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2024-10-03T14:46:25,416 raise MetadataGenerationFailed(package_details=details) from error 2024-10-03T14:46:25,416 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2024-10-03T14:46:25,429 Removed scipion-em-tomo3d==3.1.3 from https://files.pythonhosted.org/packages/c3/b9/caa468dab576021ee73907b2fefc314818a02a8dc7d7c29c46f88812eb2b/scipion-em-tomo3d-3.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-nzsqg_el' 2024-10-03T14:46:25,430 Removed build tracker: '/tmp/pip-build-tracker-nzsqg_el'