2024-10-04T02:48:15,293 Created temporary directory: /tmp/pip-build-tracker-2yk238se 2024-10-04T02:48:15,294 Initialized build tracking at /tmp/pip-build-tracker-2yk238se 2024-10-04T02:48:15,295 Created build tracker: /tmp/pip-build-tracker-2yk238se 2024-10-04T02:48:15,295 Entered build tracker: /tmp/pip-build-tracker-2yk238se 2024-10-04T02:48:15,296 Created temporary directory: /tmp/pip-wheel-dzkmrbqk 2024-10-04T02:48:15,300 Created temporary directory: /tmp/pip-ephem-wheel-cache-zzy0qt6w 2024-10-04T02:48:15,343 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-10-04T02:48:15,346 2 location(s) to search for versions of openpathsampling: 2024-10-04T02:48:15,346 * https://pypi.org/simple/openpathsampling/ 2024-10-04T02:48:15,346 * https://www.piwheels.org/simple/openpathsampling/ 2024-10-04T02:48:15,347 Fetching project page and analyzing links: https://pypi.org/simple/openpathsampling/ 2024-10-04T02:48:15,347 Getting page https://pypi.org/simple/openpathsampling/ 2024-10-04T02:48:15,349 Found index url https://pypi.org/simple/ 2024-10-04T02:48:15,573 Fetched page https://pypi.org/simple/openpathsampling/ as application/vnd.pypi.simple.v1+json 2024-10-04T02:48:15,579 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/02/01/b5365c2ef321ec80bc52ff88892fe024e19f6fa0316ba901ba078ce01c8a/openpathsampling-1.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-10-04T02:48:15,579 Found link https://files.pythonhosted.org/packages/58/a3/0d2d19010faa28544c34b8182ef45612850cd9c3f8c83b65f0f26bdf7c91/openpathsampling-1.1.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.1.0 2024-10-04T02:48:15,580 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/28/73/3642686e841c49b386e63e85abbfc64910be20dbd45dcae0495011d7bf1f/openpathsampling-1.2.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-10-04T02:48:15,581 Found link https://files.pythonhosted.org/packages/88/59/12b6dfa985ed3ca011a031daa2858d2d8cc2b34687c887a44fb7c871613c/openpathsampling-1.2.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.2.0 2024-10-04T02:48:15,582 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/9c/bc/5d3ccbb234f17bde74cbe018acf849aa3bfe37740e0ab3c02c3c9111160e/openpathsampling-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-10-04T02:48:15,582 Found link https://files.pythonhosted.org/packages/ac/ae/ad93f6d3279e6386f63f2d50b4365b8ebb1e91000838635ced2973efe6a0/openpathsampling-1.3.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.3.0 2024-10-04T02:48:15,583 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/9d/a1/31f6bd075512b8fd77d6e479f983ce924e0af8e2ebabff9a88f693831391/openpathsampling-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-10-04T02:48:15,584 Found link https://files.pythonhosted.org/packages/3c/ec/965164f9460776f21bb60dfa464ce04afa52c921ba1c80e1125d6a8a727d/openpathsampling-1.4.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.4.0 2024-10-04T02:48:15,584 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/f1/56/98b67d8bc3a2d48133a38106ec18652a05d3bb475bc666f4667dd052c509/openpathsampling-1.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-10-04T02:48:15,585 Found link https://files.pythonhosted.org/packages/49/97/94db22f357866f716c90426cc83372f0e55d9a7443b05f7832ee7799b3a2/openpathsampling-1.4.1.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.4.1 2024-10-04T02:48:15,586 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/f7/6c/3b86e36ba8486b5223cbf3107d3f0c46a053ecc5c235e98e01f3907d2556/openpathsampling-1.4.2-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-10-04T02:48:15,586 Found link https://files.pythonhosted.org/packages/e1/25/0018a24c030b7690299d81901c8eac84bfe357fdee352a3e16373f1a75ff/openpathsampling-1.4.2.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.4.2 2024-10-04T02:48:15,587 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/9f/d8/9a2478433b597bf6097fd557d5475fb604b9ea7976bcef667ed835cc909f/openpathsampling-1.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-10-04T02:48:15,588 Found link https://files.pythonhosted.org/packages/b4/35/5136b5789163d2f2b6404b1b87fa0cbab52f03526b180f784c1615ec5b1b/openpathsampling-1.5.0.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.5.0 2024-10-04T02:48:15,588 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/7b/d9/2af8b706afd4e2f659c276893f4542a6edce57a2e69e99adb9b0d1e74796/openpathsampling-1.5.1-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-10-04T02:48:15,589 Found link https://files.pythonhosted.org/packages/2a/45/d6ee86f851d913e8cf6498cf8adcf3cca700ba6c1df8df34512df521189a/openpathsampling-1.5.1.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.5.1 2024-10-04T02:48:15,589 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/8c/36/f1277f8c03c2b7d9de0d9aa2e6e936330d40ee3b585d906e860d6c9e4949/openpathsampling-1.5.2-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) 2024-10-04T02:48:15,590 Found link https://files.pythonhosted.org/packages/02/4e/339ec9bc8677dc79021b3db42144a4f7336b2894a6380f23f580ccacd992/openpathsampling-1.5.2.tar.gz (from https://pypi.org/simple/openpathsampling/), version: 1.5.2 2024-10-04T02:48:15,590 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/a4/b1/3399d16becec9af55b6a6638b4ca407140deee6b626164a2015fe8d660c1/openpathsampling-1.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) (requires-python:<3.12,>3.7) 2024-10-04T02:48:15,591 Found link https://files.pythonhosted.org/packages/e0/8b/a8c16cf82c04153816aec79ac9c6867513a2affa473dec398d4ce021cd50/openpathsampling-1.6.0.tar.gz (from https://pypi.org/simple/openpathsampling/) (requires-python:<3.12,>3.7), version: 1.6.0 2024-10-04T02:48:15,592 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/b7/94/b89b8b41fcb577edcb8ea5eeb40b5fe0eb3993f5e0f35f4a0bf2b3f47b9c/openpathsampling-1.6.1-py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) (requires-python:>=3.10) 2024-10-04T02:48:15,593 Found link https://files.pythonhosted.org/packages/3b/76/b65e806dfd7cbc5abfdecbd7ff1bbf8a21244b6779253293c78fadb13fd3/openpathsampling-1.6.1.tar.gz (from https://pypi.org/simple/openpathsampling/) (requires-python:>=3.10), version: 1.6.1 2024-10-04T02:48:15,593 Skipping link: No binaries permitted for openpathsampling: https://files.pythonhosted.org/packages/61/da/e8601e296e0c4167affd970800ee64758753d009d7fff63b3e8bc8487ada/openpathsampling-1.7.0-py3-none-any.whl (from https://pypi.org/simple/openpathsampling/) (requires-python:>=3.10) 2024-10-04T02:48:15,594 Found link https://files.pythonhosted.org/packages/31/e2/cdf7e3898c7843523d4cd98fd65a919b6d86172b4dd5540dfd2adf2f6f58/openpathsampling-1.7.0.tar.gz (from https://pypi.org/simple/openpathsampling/) (requires-python:>=3.10), version: 1.7.0 2024-10-04T02:48:15,595 Fetching project page and analyzing links: https://www.piwheels.org/simple/openpathsampling/ 2024-10-04T02:48:15,596 Getting page https://www.piwheels.org/simple/openpathsampling/ 2024-10-04T02:48:15,597 Found index url https://www.piwheels.org/simple/ 2024-10-04T02:48:15,762 Fetched page https://www.piwheels.org/simple/openpathsampling/ as text/html 2024-10-04T02:48:15,767 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.6.1-py3-none-any.whl#sha256=d5595755d573651ea04fd2443e048c908c7b322aef3f11744e738be32a75f201 (from https://www.piwheels.org/simple/openpathsampling/) (requires-python:>=3.10) 2024-10-04T02:48:15,767 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.6.0-py2.py3-none-any.whl#sha256=f38836d7904ebe1e4853fc9a3d6c412400320511eea27df7fed584d1b15040eb (from https://www.piwheels.org/simple/openpathsampling/) (requires-python:<3.12,>3.7) 2024-10-04T02:48:15,768 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.5.2-py2.py3-none-any.whl#sha256=fc22eb29a97a8715d1df829d6cf7b2732ed6c694fef34a0bb1cf51c6275bca76 (from https://www.piwheels.org/simple/openpathsampling/) 2024-10-04T02:48:15,769 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.5.1-py2.py3-none-any.whl#sha256=b19b5ce7651bbe666001369e51b2dc681acca80610e8c8d1fe092badbf908d22 (from https://www.piwheels.org/simple/openpathsampling/) 2024-10-04T02:48:15,769 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.5.0-py2.py3-none-any.whl#sha256=7848543f7191c361a2e3028f0bcb9e3623a15c85d3566ccdfbe386b50874db63 (from https://www.piwheels.org/simple/openpathsampling/) 2024-10-04T02:48:15,769 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.4.2-py2.py3-none-any.whl#sha256=eb561ae485b78b8b3b12e3ee332d22e3e27f331e083508497c9a040fb240ec3b (from https://www.piwheels.org/simple/openpathsampling/) 2024-10-04T02:48:15,770 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.4.1-py2.py3-none-any.whl#sha256=5e36977bd5aa1398eb8b685ae2e743f9ddc082a9dcb44f32c6b9b8b22e78b2af (from https://www.piwheels.org/simple/openpathsampling/) 2024-10-04T02:48:15,770 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.4.0-py2.py3-none-any.whl#sha256=9bd1b86a559d477d9d1ffbe8ca9a444a92969d37704dc484deb193b4e5e87666 (from https://www.piwheels.org/simple/openpathsampling/) 2024-10-04T02:48:15,771 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.3.0-py2.py3-none-any.whl#sha256=c82dcb168f705ca3fb414d8622792c4d9ef3700c41777d0c7b04912df70edf46 (from https://www.piwheels.org/simple/openpathsampling/) 2024-10-04T02:48:15,772 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.2.0-py2.py3-none-any.whl#sha256=15014f6d0f3cef0b8f272d50b15f5475b8ad0fdf3a008a1842700242d75a850c (from https://www.piwheels.org/simple/openpathsampling/) 2024-10-04T02:48:15,772 Skipping link: No binaries permitted for openpathsampling: https://www.piwheels.org/simple/openpathsampling/openpathsampling-1.1.0-py2.py3-none-any.whl#sha256=0c9268baddfc1648d879f87e26866fcb091cc87462067216d0b516ca4058524b (from https://www.piwheels.org/simple/openpathsampling/) 2024-10-04T02:48:15,773 Skipping link: not a file: https://www.piwheels.org/simple/openpathsampling/ 2024-10-04T02:48:15,774 Skipping link: not a file: https://pypi.org/simple/openpathsampling/ 2024-10-04T02:48:15,792 Given no hashes to check 1 links for project 'openpathsampling': discarding no candidates 2024-10-04T02:48:15,794 Collecting openpathsampling==1.7.0 2024-10-04T02:48:15,796 Created temporary directory: /tmp/pip-unpack-v9v0bq7h 2024-10-04T02:48:16,026 Downloading openpathsampling-1.7.0.tar.gz (3.1 MB) 2024-10-04T02:48:18,723 Added openpathsampling==1.7.0 from https://files.pythonhosted.org/packages/31/e2/cdf7e3898c7843523d4cd98fd65a919b6d86172b4dd5540dfd2adf2f6f58/openpathsampling-1.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-2yk238se' 2024-10-04T02:48:18,724 Running setup.py (path:/tmp/pip-wheel-dzkmrbqk/openpathsampling_91720d31f3ef46ea9783331deb801a99/setup.py) egg_info for package openpathsampling 2024-10-04T02:48:18,725 Created temporary directory: /tmp/pip-pip-egg-info-6e7hx0bc 2024-10-04T02:48:18,726 Preparing metadata (setup.py): started 2024-10-04T02:48:18,727 Running command python setup.py egg_info 2024-10-04T02:48:19,914 running egg_info 2024-10-04T02:48:19,915 creating /tmp/pip-pip-egg-info-6e7hx0bc/openpathsampling.egg-info 2024-10-04T02:48:19,942 writing /tmp/pip-pip-egg-info-6e7hx0bc/openpathsampling.egg-info/PKG-INFO 2024-10-04T02:48:19,947 writing dependency_links to /tmp/pip-pip-egg-info-6e7hx0bc/openpathsampling.egg-info/dependency_links.txt 2024-10-04T02:48:19,950 writing requirements to /tmp/pip-pip-egg-info-6e7hx0bc/openpathsampling.egg-info/requires.txt 2024-10-04T02:48:19,951 writing top-level names to /tmp/pip-pip-egg-info-6e7hx0bc/openpathsampling.egg-info/top_level.txt 2024-10-04T02:48:19,952 writing manifest file '/tmp/pip-pip-egg-info-6e7hx0bc/openpathsampling.egg-info/SOURCES.txt' 2024-10-04T02:48:20,092 reading manifest file '/tmp/pip-pip-egg-info-6e7hx0bc/openpathsampling.egg-info/SOURCES.txt' 2024-10-04T02:48:20,093 reading manifest template 'MANIFEST.in' 2024-10-04T02:48:20,094 warning: manifest_maker: MANIFEST.in, line 1: unknown action 'LICENSE' 2024-10-04T02:48:20,114 adding license file 'LICENSE' 2024-10-04T02:48:20,131 writing manifest file '/tmp/pip-pip-egg-info-6e7hx0bc/openpathsampling.egg-info/SOURCES.txt' 2024-10-04T02:48:20,245 Preparing metadata (setup.py): finished with status 'done' 2024-10-04T02:48:20,249 Source in /tmp/pip-wheel-dzkmrbqk/openpathsampling_91720d31f3ef46ea9783331deb801a99 has version 1.7.0, which satisfies requirement openpathsampling==1.7.0 from https://files.pythonhosted.org/packages/31/e2/cdf7e3898c7843523d4cd98fd65a919b6d86172b4dd5540dfd2adf2f6f58/openpathsampling-1.7.0.tar.gz 2024-10-04T02:48:20,250 Removed openpathsampling==1.7.0 from https://files.pythonhosted.org/packages/31/e2/cdf7e3898c7843523d4cd98fd65a919b6d86172b4dd5540dfd2adf2f6f58/openpathsampling-1.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-2yk238se' 2024-10-04T02:48:20,259 Created temporary directory: /tmp/pip-unpack-j837sj6q 2024-10-04T02:48:20,260 Created temporary directory: /tmp/pip-unpack-7eai670m 2024-10-04T02:48:20,261 Building wheels for collected packages: openpathsampling 2024-10-04T02:48:20,265 Created temporary directory: /tmp/pip-wheel-jewk9zxm 2024-10-04T02:48:20,266 Building wheel for openpathsampling (setup.py): started 2024-10-04T02:48:20,267 Destination directory: /tmp/pip-wheel-jewk9zxm 2024-10-04T02:48:20,268 Running command python setup.py bdist_wheel 2024-10-04T02:48:21,463 running bdist_wheel 2024-10-04T02:48:21,596 running build 2024-10-04T02:48:21,597 running build_py 2024-10-04T02:48:21,629 creating build/lib/examples 2024-10-04T02:48:21,631 copying examples/prep_example_data.py -> build/lib/examples 2024-10-04T02:48:21,635 creating build/lib/openpathsampling 2024-10-04T02:48:21,636 copying openpathsampling/ensemble.py -> build/lib/openpathsampling 2024-10-04T02:48:21,641 copying openpathsampling/pathmover.py -> build/lib/openpathsampling 2024-10-04T02:48:21,644 copying openpathsampling/treelogic.py -> build/lib/openpathsampling 2024-10-04T02:48:21,647 copying openpathsampling/sample.py -> build/lib/openpathsampling 2024-10-04T02:48:21,650 copying openpathsampling/volume.py -> build/lib/openpathsampling 2024-10-04T02:48:21,653 copying openpathsampling/collectivevariable.py -> build/lib/openpathsampling 2024-10-04T02:48:21,655 copying openpathsampling/shooting.py -> build/lib/openpathsampling 2024-10-04T02:48:21,658 copying openpathsampling/snapshot_modifier.py -> build/lib/openpathsampling 2024-10-04T02:48:21,661 copying openpathsampling/tools.py -> build/lib/openpathsampling 2024-10-04T02:48:21,663 copying openpathsampling/_installed_version.py -> build/lib/openpathsampling 2024-10-04T02:48:21,665 copying openpathsampling/step_visualizer_2D.py -> build/lib/openpathsampling 2024-10-04T02:48:21,667 copying openpathsampling/integration_tools.py -> build/lib/openpathsampling 2024-10-04T02:48:21,669 copying openpathsampling/movechange.py -> build/lib/openpathsampling 2024-10-04T02:48:21,672 copying openpathsampling/visualize.py -> build/lib/openpathsampling 2024-10-04T02:48:21,675 copying openpathsampling/__init__.py -> build/lib/openpathsampling 2024-10-04T02:48:21,677 copying openpathsampling/progress.py -> build/lib/openpathsampling 2024-10-04T02:48:21,679 copying openpathsampling/range_logic.py -> build/lib/openpathsampling 2024-10-04T02:48:21,681 copying openpathsampling/rng.py -> build/lib/openpathsampling 2024-10-04T02:48:21,683 copying openpathsampling/version.py -> build/lib/openpathsampling 2024-10-04T02:48:21,685 copying openpathsampling/pathmover_inout.py -> build/lib/openpathsampling 2024-10-04T02:48:21,687 copying openpathsampling/ops_logging.py -> build/lib/openpathsampling 2024-10-04T02:48:21,689 copying openpathsampling/deprecations.py -> build/lib/openpathsampling 2024-10-04T02:48:21,691 copying openpathsampling/bias_function.py -> build/lib/openpathsampling 2024-10-04T02:48:21,694 creating build/lib/devtools 2024-10-04T02:48:21,695 copying devtools/autorelease_check.py -> build/lib/devtools 2024-10-04T02:48:21,697 copying devtools/setup_cfg_reqs.py -> build/lib/devtools 2024-10-04T02:48:21,699 creating build/lib/docs 2024-10-04T02:48:21,700 copying docs/premake.py -> build/lib/docs 2024-10-04T02:48:21,702 copying docs/conf.py -> build/lib/docs 2024-10-04T02:48:21,705 creating build/lib/examples/alanine_dipeptide_mstis 2024-10-04T02:48:21,706 copying examples/alanine_dipeptide_mstis/alatools.py -> build/lib/examples/alanine_dipeptide_mstis 2024-10-04T02:48:21,709 creating build/lib/examples/resources 2024-10-04T02:48:21,710 copying examples/resources/toy_plot_helpers.py -> build/lib/examples/resources 2024-10-04T02:48:21,713 creating build/lib/openpathsampling/pathmovers 2024-10-04T02:48:21,714 copying openpathsampling/pathmovers/move_strategies.py -> build/lib/openpathsampling/pathmovers 2024-10-04T02:48:21,716 copying openpathsampling/pathmovers/move_schemes.py -> build/lib/openpathsampling/pathmovers 2024-10-04T02:48:21,717 copying openpathsampling/pathmovers/__init__.py -> build/lib/openpathsampling/pathmovers 2024-10-04T02:48:21,719 copying openpathsampling/pathmovers/spring_shooting.py -> build/lib/openpathsampling/pathmovers 2024-10-04T02:48:21,722 creating build/lib/openpathsampling/beta 2024-10-04T02:48:21,723 copying openpathsampling/beta/hooks.py -> build/lib/openpathsampling/beta 2024-10-04T02:48:21,726 copying openpathsampling/beta/__init__.py -> build/lib/openpathsampling/beta 2024-10-04T02:48:21,728 creating build/lib/openpathsampling/analysis 2024-10-04T02:48:21,729 copying openpathsampling/analysis/replica_network.py -> build/lib/openpathsampling/analysis 2024-10-04T02:48:21,732 copying openpathsampling/analysis/sshooting_analysis.py -> build/lib/openpathsampling/analysis 2024-10-04T02:48:21,734 copying openpathsampling/analysis/shooting_point_analysis.py -> build/lib/openpathsampling/analysis 2024-10-04T02:48:21,737 copying openpathsampling/analysis/path_histogram.py -> build/lib/openpathsampling/analysis 2024-10-04T02:48:21,739 copying openpathsampling/analysis/tools.py -> build/lib/openpathsampling/analysis 2024-10-04T02:48:21,741 copying openpathsampling/analysis/ensemble_representation.py -> build/lib/openpathsampling/analysis 2024-10-04T02:48:21,743 copying openpathsampling/analysis/channel_analysis.py -> build/lib/openpathsampling/analysis 2024-10-04T02:48:21,745 copying openpathsampling/analysis/__init__.py -> build/lib/openpathsampling/analysis 2024-10-04T02:48:21,747 copying openpathsampling/analysis/reactive_flux_analysis.py -> build/lib/openpathsampling/analysis 2024-10-04T02:48:21,750 copying openpathsampling/analysis/trajectory_transition_analysis.py -> build/lib/openpathsampling/analysis 2024-10-04T02:48:21,753 creating build/lib/openpathsampling/experimental 2024-10-04T02:48:21,754 copying openpathsampling/experimental/__init__.py -> build/lib/openpathsampling/experimental 2024-10-04T02:48:21,758 creating build/lib/openpathsampling/tests 2024-10-04T02:48:21,759 copying openpathsampling/tests/test_gromacs_engine.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,762 copying openpathsampling/tests/test_deprecations.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,764 copying openpathsampling/tests/test_openmm_engine.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,766 copying openpathsampling/tests/test_trajectory_transition_analysis.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,768 copying openpathsampling/tests/test_volume.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,771 copying openpathsampling/tests/test_spring_shooting.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,773 copying openpathsampling/tests/test_shooting.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,776 copying openpathsampling/tests/test_shared.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,777 copying openpathsampling/tests/test_sshooting_analysis.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,779 copying openpathsampling/tests/test_reactive_flux_analysis.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,781 copying openpathsampling/tests/test_storage.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,784 copying openpathsampling/tests/test_helpers.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,786 copying openpathsampling/tests/test_collectivevariable.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,789 copying openpathsampling/tests/test_toy_dynamics.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,791 copying openpathsampling/tests/test_transitions.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,794 copying openpathsampling/tests/test_pathsimulator.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,797 copying openpathsampling/tests/test_openmm_tools.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,800 copying openpathsampling/tests/test_pyemma_cv.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,801 copying openpathsampling/tests/test_mdtraj_support.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,803 copying openpathsampling/tests/test_wham.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,805 copying openpathsampling/tests/test_external_snapshots.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,808 copying openpathsampling/tests/test_bias_function.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,810 copying openpathsampling/tests/test_integration_tools.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,812 copying openpathsampling/tests/test_pathmover.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,815 copying openpathsampling/tests/test_progress.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,817 copying openpathsampling/tests/test_movescheme.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,820 copying openpathsampling/tests/test_tis_analysis.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,823 copying openpathsampling/tests/test_toy_features.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,828 copying openpathsampling/tests/test_shooting_point_analysis.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,830 copying openpathsampling/tests/test_sample.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,833 copying openpathsampling/tests/test_ensemble.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,836 copying openpathsampling/tests/test_external_engine.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,839 copying openpathsampling/tests/__init__.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,841 copying openpathsampling/tests/test_range_logic.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,843 copying openpathsampling/tests/test_trajectory.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,845 copying openpathsampling/tests/test_interface_set.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,847 copying openpathsampling/tests/test_channel_analysis.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,850 copying openpathsampling/tests/test_snapshot.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,851 copying openpathsampling/tests/test_features.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,853 copying openpathsampling/tests/test_openmm_snapshot.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,855 copying openpathsampling/tests/test_histogram.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,858 copying openpathsampling/tests/test_rng.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,859 copying openpathsampling/tests/test_attribute.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,861 copying openpathsampling/tests/test_snapshot_modifier.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,864 copying openpathsampling/tests/test_ms_outer_interface.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,866 copying openpathsampling/tests/test_resampling_statistics.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,868 copying openpathsampling/tests/test_sshooting_simulator.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,870 copying openpathsampling/tests/test_visit_all_states.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,872 copying openpathsampling/tests/test_network.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,875 copying openpathsampling/tests/test_movestrategy.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,878 copying openpathsampling/tests/test_netcdfplus_base.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,880 copying openpathsampling/tests/test_dynamicsengine.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,882 copying openpathsampling/tests/test_lookup_function.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,884 copying openpathsampling/tests/test_path_histogram.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,886 copying openpathsampling/tests/test_api.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,888 copying openpathsampling/tests/test_part_in_b_tps.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,890 copying openpathsampling/tests/test_plumed_wrapper.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,892 copying openpathsampling/tests/test_tools.py -> build/lib/openpathsampling/tests 2024-10-04T02:48:21,895 creating build/lib/openpathsampling/storage 2024-10-04T02:48:21,896 copying openpathsampling/storage/util.py -> build/lib/openpathsampling/storage 2024-10-04T02:48:21,898 copying openpathsampling/storage/__init__.py -> build/lib/openpathsampling/storage 2024-10-04T02:48:21,900 copying openpathsampling/storage/storage.py -> build/lib/openpathsampling/storage 2024-10-04T02:48:21,902 copying openpathsampling/storage/distributed.py -> build/lib/openpathsampling/storage 2024-10-04T02:48:21,905 creating build/lib/openpathsampling/high_level 2024-10-04T02:48:21,906 copying openpathsampling/high_level/move_scheme.py -> build/lib/openpathsampling/high_level 2024-10-04T02:48:21,909 copying openpathsampling/high_level/__init__.py -> build/lib/openpathsampling/high_level 2024-10-04T02:48:21,911 copying openpathsampling/high_level/interface_set.py -> build/lib/openpathsampling/high_level 2024-10-04T02:48:21,913 copying openpathsampling/high_level/ms_outer_interface.py -> build/lib/openpathsampling/high_level 2024-10-04T02:48:21,915 copying openpathsampling/high_level/network.py -> build/lib/openpathsampling/high_level 2024-10-04T02:48:21,918 copying openpathsampling/high_level/part_in_b_tps.py -> build/lib/openpathsampling/high_level 2024-10-04T02:48:21,920 copying openpathsampling/high_level/move_strategy.py -> build/lib/openpathsampling/high_level 2024-10-04T02:48:21,923 copying openpathsampling/high_level/transition.py -> build/lib/openpathsampling/high_level 2024-10-04T02:48:21,927 creating build/lib/openpathsampling/netcdfplus 2024-10-04T02:48:21,928 copying openpathsampling/netcdfplus/netcdfplus.py -> build/lib/openpathsampling/netcdfplus 2024-10-04T02:48:21,931 copying openpathsampling/netcdfplus/base.py -> build/lib/openpathsampling/netcdfplus 2024-10-04T02:48:21,933 copying openpathsampling/netcdfplus/util.py -> build/lib/openpathsampling/netcdfplus 2024-10-04T02:48:21,934 copying openpathsampling/netcdfplus/proxy.py -> build/lib/openpathsampling/netcdfplus 2024-10-04T02:48:21,937 copying openpathsampling/netcdfplus/dictify.py -> build/lib/openpathsampling/netcdfplus 2024-10-04T02:48:21,939 copying openpathsampling/netcdfplus/attribute.py -> build/lib/openpathsampling/netcdfplus 2024-10-04T02:48:21,942 copying openpathsampling/netcdfplus/cache.py -> build/lib/openpathsampling/netcdfplus 2024-10-04T02:48:21,944 copying openpathsampling/netcdfplus/__init__.py -> build/lib/openpathsampling/netcdfplus 2024-10-04T02:48:21,946 copying openpathsampling/netcdfplus/chaindict.py -> build/lib/openpathsampling/netcdfplus 2024-10-04T02:48:21,948 copying openpathsampling/netcdfplus/version.py -> build/lib/openpathsampling/netcdfplus 2024-10-04T02:48:21,950 creating build/lib/openpathsampling/pathsimulators 2024-10-04T02:48:21,951 copying openpathsampling/pathsimulators/sshooting_simulator.py -> build/lib/openpathsampling/pathsimulators 2024-10-04T02:48:21,953 copying openpathsampling/pathsimulators/__init__.py -> build/lib/openpathsampling/pathsimulators 2024-10-04T02:48:21,955 copying openpathsampling/pathsimulators/path_sampling.py -> build/lib/openpathsampling/pathsimulators 2024-10-04T02:48:21,957 copying openpathsampling/pathsimulators/direct_md.py -> build/lib/openpathsampling/pathsimulators 2024-10-04T02:48:21,959 copying openpathsampling/pathsimulators/path_simulator.py -> build/lib/openpathsampling/pathsimulators 2024-10-04T02:48:21,962 copying openpathsampling/pathsimulators/shoot_snapshots.py -> build/lib/openpathsampling/pathsimulators 2024-10-04T02:48:21,964 copying openpathsampling/pathsimulators/bootstrap_init_conds.py -> build/lib/openpathsampling/pathsimulators 2024-10-04T02:48:21,966 copying openpathsampling/pathsimulators/reactive_flux.py -> build/lib/openpathsampling/pathsimulators 2024-10-04T02:48:21,969 creating build/lib/openpathsampling/engines 2024-10-04T02:48:21,970 copying openpathsampling/engines/delayedinterrupt.py -> build/lib/openpathsampling/engines 2024-10-04T02:48:21,972 copying openpathsampling/engines/external_engine.py -> build/lib/openpathsampling/engines 2024-10-04T02:48:21,974 copying openpathsampling/engines/dynamics_engine.py -> build/lib/openpathsampling/engines 2024-10-04T02:48:21,977 copying openpathsampling/engines/__init__.py -> build/lib/openpathsampling/engines 2024-10-04T02:48:21,978 copying openpathsampling/engines/snapshot.py -> build/lib/openpathsampling/engines 2024-10-04T02:48:21,981 copying openpathsampling/engines/trajectory.py -> build/lib/openpathsampling/engines 2024-10-04T02:48:21,983 copying openpathsampling/engines/topology.py -> build/lib/openpathsampling/engines 2024-10-04T02:48:21,985 creating build/lib/openpathsampling/numerics 2024-10-04T02:48:21,986 copying openpathsampling/numerics/wham.py -> build/lib/openpathsampling/numerics 2024-10-04T02:48:21,989 copying openpathsampling/numerics/resampling_statistics.py -> build/lib/openpathsampling/numerics 2024-10-04T02:48:21,992 copying openpathsampling/numerics/histogram.py -> build/lib/openpathsampling/numerics 2024-10-04T02:48:21,994 copying openpathsampling/numerics/__init__.py -> build/lib/openpathsampling/numerics 2024-10-04T02:48:21,996 copying openpathsampling/numerics/lookup_function.py -> build/lib/openpathsampling/numerics 2024-10-04T02:48:21,999 creating build/lib/openpathsampling/collectivevariables 2024-10-04T02:48:22,000 copying openpathsampling/collectivevariables/plumed_wrapper.py -> build/lib/openpathsampling/collectivevariables 2024-10-04T02:48:22,002 copying openpathsampling/collectivevariables/__init__.py -> build/lib/openpathsampling/collectivevariables 2024-10-04T02:48:22,005 creating build/lib/openpathsampling/strategies 2024-10-04T02:48:22,006 copying openpathsampling/strategies/__init__.py -> build/lib/openpathsampling/strategies 2024-10-04T02:48:22,008 creating build/lib/openpathsampling/ensembles 2024-10-04T02:48:22,009 copying openpathsampling/ensembles/__init__.py -> build/lib/openpathsampling/ensembles 2024-10-04T02:48:22,010 copying openpathsampling/ensembles/visit_all_states.py -> build/lib/openpathsampling/ensembles 2024-10-04T02:48:22,013 creating build/lib/openpathsampling/analysis/tis 2024-10-04T02:48:22,014 copying openpathsampling/analysis/tis/standard_analysis.py -> build/lib/openpathsampling/analysis/tis 2024-10-04T02:48:22,017 copying openpathsampling/analysis/tis/flux.py -> build/lib/openpathsampling/analysis/tis 2024-10-04T02:48:22,020 copying openpathsampling/analysis/tis/misc.py -> build/lib/openpathsampling/analysis/tis 2024-10-04T02:48:22,022 copying openpathsampling/analysis/tis/__init__.py -> build/lib/openpathsampling/analysis/tis 2024-10-04T02:48:22,023 copying openpathsampling/analysis/tis/crossing_probability.py -> build/lib/openpathsampling/analysis/tis 2024-10-04T02:48:22,026 copying openpathsampling/analysis/tis/core.py -> build/lib/openpathsampling/analysis/tis 2024-10-04T02:48:22,029 creating build/lib/openpathsampling/experimental/path_tree 2024-10-04T02:48:22,030 copying openpathsampling/experimental/path_tree/svg.py -> build/lib/openpathsampling/experimental/path_tree 2024-10-04T02:48:22,032 copying openpathsampling/experimental/path_tree/path_tree.py -> build/lib/openpathsampling/experimental/path_tree 2024-10-04T02:48:22,034 copying openpathsampling/experimental/path_tree/__init__.py -> build/lib/openpathsampling/experimental/path_tree 2024-10-04T02:48:22,036 copying openpathsampling/experimental/path_tree/mpl.py -> build/lib/openpathsampling/experimental/path_tree 2024-10-04T02:48:22,038 copying openpathsampling/experimental/path_tree/options.py -> build/lib/openpathsampling/experimental/path_tree 2024-10-04T02:48:22,039 copying openpathsampling/experimental/path_tree/plotter.py -> build/lib/openpathsampling/experimental/path_tree 2024-10-04T02:48:22,042 creating build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,043 copying openpathsampling/experimental/storage/test_monkey_patches.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,045 copying openpathsampling/experimental/storage/test_pathsampling.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,047 copying openpathsampling/experimental/storage/test_snapshots_table.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,049 copying openpathsampling/experimental/storage/test_regressions.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,051 copying openpathsampling/experimental/storage/test_mdtraj_json.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,053 copying openpathsampling/experimental/storage/snapshots.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,055 copying openpathsampling/experimental/storage/mdtraj_json.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,057 copying openpathsampling/experimental/storage/__init__.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,059 copying openpathsampling/experimental/storage/simtk_unit.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,061 copying openpathsampling/experimental/storage/snapshots_table.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,063 copying openpathsampling/experimental/storage/monkey_patches.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,065 copying openpathsampling/experimental/storage/test_simtk_unit.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,066 copying openpathsampling/experimental/storage/test_collective_variables.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,069 copying openpathsampling/experimental/storage/ops_storage.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,071 copying openpathsampling/experimental/storage/test_snapshot_integrations.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,073 copying openpathsampling/experimental/storage/collective_variables.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,075 copying openpathsampling/experimental/storage/test_snapshots.py -> build/lib/openpathsampling/experimental/storage 2024-10-04T02:48:22,078 creating build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,079 copying openpathsampling/experimental/simstore/test_storable_function.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,082 copying openpathsampling/experimental/simstore/serialization.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,084 copying openpathsampling/experimental/simstore/type_ident.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,086 copying openpathsampling/experimental/simstore/test_type_ident.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,088 copying openpathsampling/experimental/simstore/test_storage.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,090 copying openpathsampling/experimental/simstore/test_custom_json.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,093 copying openpathsampling/experimental/simstore/test_sql_backend.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,095 copying openpathsampling/experimental/simstore/test_tags_table.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,097 copying openpathsampling/experimental/simstore/storable_functions.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,100 copying openpathsampling/experimental/simstore/test_dict_serialization_helpers.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,102 copying openpathsampling/experimental/simstore/callable_codec.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,104 copying openpathsampling/experimental/simstore/test_serialization.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,106 copying openpathsampling/experimental/simstore/tools.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,109 copying openpathsampling/experimental/simstore/proxy.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,111 copying openpathsampling/experimental/simstore/sql_backend.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,113 copying openpathsampling/experimental/simstore/test_class_info.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,116 copying openpathsampling/experimental/simstore/test_storable_function_integration.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,118 copying openpathsampling/experimental/simstore/__init__.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,120 copying openpathsampling/experimental/simstore/test_backend.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,122 copying openpathsampling/experimental/simstore/serialization_helpers.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,125 copying openpathsampling/experimental/simstore/my_types.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,127 copying openpathsampling/experimental/simstore/dict_serialization_helpers.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,128 copying openpathsampling/experimental/simstore/custom_json.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,131 copying openpathsampling/experimental/simstore/storage.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,133 copying openpathsampling/experimental/simstore/uuids.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,135 copying openpathsampling/experimental/simstore/tags_table.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,137 copying openpathsampling/experimental/simstore/test_uuids.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,139 copying openpathsampling/experimental/simstore/memory_backend.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,141 copying openpathsampling/experimental/simstore/test_utils.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,143 copying openpathsampling/experimental/simstore/class_lookup.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,145 copying openpathsampling/experimental/simstore/attribute_handlers.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,147 copying openpathsampling/experimental/simstore/class_info.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,149 copying openpathsampling/experimental/simstore/wrapper.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,151 copying openpathsampling/experimental/simstore/backend.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,153 copying openpathsampling/experimental/simstore/test_serialization_helpers.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,155 copying openpathsampling/experimental/simstore/test_attribute_handlers.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,157 copying openpathsampling/experimental/simstore/test_tools.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,159 copying openpathsampling/experimental/simstore/test_callable_codec.py -> build/lib/openpathsampling/experimental/simstore 2024-10-04T02:48:22,161 creating build/lib/openpathsampling/experimental/simstore/regressions 2024-10-04T02:48:22,162 copying openpathsampling/experimental/simstore/regressions/test_numpy_sfrs.py -> build/lib/openpathsampling/experimental/simstore/regressions 2024-10-04T02:48:22,165 creating build/lib/openpathsampling/tests/analysis 2024-10-04T02:48:22,166 copying openpathsampling/tests/analysis/conftest.py -> build/lib/openpathsampling/tests/analysis 2024-10-04T02:48:22,168 copying openpathsampling/tests/analysis/__init__.py -> build/lib/openpathsampling/tests/analysis 2024-10-04T02:48:22,170 creating build/lib/openpathsampling/tests/external_engine 2024-10-04T02:48:22,171 copying openpathsampling/tests/external_engine/microtest.py -> build/lib/openpathsampling/tests/external_engine 2024-10-04T02:48:22,174 creating build/lib/openpathsampling/tests/pathsimulators 2024-10-04T02:48:22,175 copying openpathsampling/tests/pathsimulators/__init__.py -> build/lib/openpathsampling/tests/pathsimulators 2024-10-04T02:48:22,177 copying openpathsampling/tests/pathsimulators/test_hooks.py -> build/lib/openpathsampling/tests/pathsimulators 2024-10-04T02:48:22,180 creating build/lib/openpathsampling/tests/analysis/utils 2024-10-04T02:48:22,181 copying openpathsampling/tests/analysis/utils/fixture_classes.py -> build/lib/openpathsampling/tests/analysis/utils 2024-10-04T02:48:22,184 copying openpathsampling/tests/analysis/utils/test_mock_movers.py -> build/lib/openpathsampling/tests/analysis/utils 2024-10-04T02:48:22,186 copying openpathsampling/tests/analysis/utils/mock_movers.py -> build/lib/openpathsampling/tests/analysis/utils 2024-10-04T02:48:22,189 copying openpathsampling/tests/analysis/utils/test_fixture_classes.py -> build/lib/openpathsampling/tests/analysis/utils 2024-10-04T02:48:22,191 copying openpathsampling/tests/analysis/utils/__init__.py -> build/lib/openpathsampling/tests/analysis/utils 2024-10-04T02:48:22,195 creating build/lib/openpathsampling/storage/stores 2024-10-04T02:48:22,196 copying openpathsampling/storage/stores/snapshot_wrapper.py -> build/lib/openpathsampling/storage/stores 2024-10-04T02:48:22,199 copying openpathsampling/storage/stores/sample.py -> build/lib/openpathsampling/storage/stores 2024-10-04T02:48:22,201 copying openpathsampling/storage/stores/mcstep.py -> build/lib/openpathsampling/storage/stores 2024-10-04T02:48:22,203 copying openpathsampling/storage/stores/collectivevariable.py -> build/lib/openpathsampling/storage/stores 2024-10-04T02:48:22,205 copying openpathsampling/storage/stores/snapshot_base.py -> build/lib/openpathsampling/storage/stores 2024-10-04T02:48:22,207 copying openpathsampling/storage/stores/pathsimulator.py -> build/lib/openpathsampling/storage/stores 2024-10-04T02:48:22,209 copying openpathsampling/storage/stores/movechange.py -> build/lib/openpathsampling/storage/stores 2024-10-04T02:48:22,211 copying openpathsampling/storage/stores/__init__.py -> build/lib/openpathsampling/storage/stores 2024-10-04T02:48:22,213 copying openpathsampling/storage/stores/snapshot_feature.py -> build/lib/openpathsampling/storage/stores 2024-10-04T02:48:22,215 copying openpathsampling/storage/stores/snapshot_value.py -> build/lib/openpathsampling/storage/stores 2024-10-04T02:48:22,217 copying openpathsampling/storage/stores/trajectory.py -> build/lib/openpathsampling/storage/stores 2024-10-04T02:48:22,220 creating build/lib/openpathsampling/netcdfplus/stores 2024-10-04T02:48:22,221 copying openpathsampling/netcdfplus/stores/dict.py -> build/lib/openpathsampling/netcdfplus/stores 2024-10-04T02:48:22,224 copying openpathsampling/netcdfplus/stores/indexed.py -> build/lib/openpathsampling/netcdfplus/stores 2024-10-04T02:48:22,226 copying openpathsampling/netcdfplus/stores/named.py -> build/lib/openpathsampling/netcdfplus/stores 2024-10-04T02:48:22,229 copying openpathsampling/netcdfplus/stores/attribute.py -> build/lib/openpathsampling/netcdfplus/stores 2024-10-04T02:48:22,231 copying openpathsampling/netcdfplus/stores/variable.py -> build/lib/openpathsampling/netcdfplus/stores 2024-10-04T02:48:22,233 copying openpathsampling/netcdfplus/stores/__init__.py -> build/lib/openpathsampling/netcdfplus/stores 2024-10-04T02:48:22,235 copying openpathsampling/netcdfplus/stores/value.py -> build/lib/openpathsampling/netcdfplus/stores 2024-10-04T02:48:22,237 copying openpathsampling/netcdfplus/stores/object.py -> build/lib/openpathsampling/netcdfplus/stores 2024-10-04T02:48:22,241 creating build/lib/openpathsampling/engines/features 2024-10-04T02:48:22,242 copying openpathsampling/engines/features/base.py -> build/lib/openpathsampling/engines/features 2024-10-04T02:48:22,245 copying openpathsampling/engines/features/coordinates.py -> build/lib/openpathsampling/engines/features 2024-10-04T02:48:22,247 copying openpathsampling/engines/features/numpydoctools.py -> build/lib/openpathsampling/engines/features 2024-10-04T02:48:22,249 copying openpathsampling/engines/features/kinetics.py -> build/lib/openpathsampling/engines/features 2024-10-04T02:48:22,251 copying openpathsampling/engines/features/box_vectors.py -> build/lib/openpathsampling/engines/features 2024-10-04T02:48:22,253 copying openpathsampling/engines/features/__init__.py -> build/lib/openpathsampling/engines/features 2024-10-04T02:48:22,255 copying openpathsampling/engines/features/statics.py -> build/lib/openpathsampling/engines/features 2024-10-04T02:48:22,257 copying openpathsampling/engines/features/velocities.py -> build/lib/openpathsampling/engines/features 2024-10-04T02:48:22,260 copying openpathsampling/engines/features/engine.py -> build/lib/openpathsampling/engines/features 2024-10-04T02:48:22,262 copying openpathsampling/engines/features/shared.py -> build/lib/openpathsampling/engines/features 2024-10-04T02:48:22,265 copying openpathsampling/engines/features/topology.py -> build/lib/openpathsampling/engines/features 2024-10-04T02:48:22,268 creating build/lib/openpathsampling/engines/gromacs 2024-10-04T02:48:22,270 copying openpathsampling/engines/gromacs/__init__.py -> build/lib/openpathsampling/engines/gromacs 2024-10-04T02:48:22,273 copying openpathsampling/engines/gromacs/engine.py -> build/lib/openpathsampling/engines/gromacs 2024-10-04T02:48:22,276 creating build/lib/openpathsampling/engines/toy 2024-10-04T02:48:22,278 copying openpathsampling/engines/toy/integrators.py -> build/lib/openpathsampling/engines/toy 2024-10-04T02:48:22,280 copying openpathsampling/engines/toy/__init__.py -> build/lib/openpathsampling/engines/toy 2024-10-04T02:48:22,282 copying openpathsampling/engines/toy/snapshot.py -> build/lib/openpathsampling/engines/toy 2024-10-04T02:48:22,285 copying openpathsampling/engines/toy/engine.py -> build/lib/openpathsampling/engines/toy 2024-10-04T02:48:22,287 copying openpathsampling/engines/toy/topology.py -> build/lib/openpathsampling/engines/toy 2024-10-04T02:48:22,290 copying openpathsampling/engines/toy/pes.py -> build/lib/openpathsampling/engines/toy 2024-10-04T02:48:22,293 creating build/lib/openpathsampling/engines/external_snapshots 2024-10-04T02:48:22,294 copying openpathsampling/engines/external_snapshots/__init__.py -> build/lib/openpathsampling/engines/external_snapshots 2024-10-04T02:48:22,297 copying openpathsampling/engines/external_snapshots/snapshot.py -> build/lib/openpathsampling/engines/external_snapshots 2024-10-04T02:48:22,301 creating build/lib/openpathsampling/engines/openmm 2024-10-04T02:48:22,302 copying openpathsampling/engines/openmm/tools.py -> build/lib/openpathsampling/engines/openmm 2024-10-04T02:48:22,306 copying openpathsampling/engines/openmm/__init__.py -> build/lib/openpathsampling/engines/openmm 2024-10-04T02:48:22,308 copying openpathsampling/engines/openmm/snapshot.py -> build/lib/openpathsampling/engines/openmm 2024-10-04T02:48:22,311 copying openpathsampling/engines/openmm/engine.py -> build/lib/openpathsampling/engines/openmm 2024-10-04T02:48:22,314 copying openpathsampling/engines/openmm/topology.py -> build/lib/openpathsampling/engines/openmm 2024-10-04T02:48:22,317 creating build/lib/openpathsampling/engines/toy/features 2024-10-04T02:48:22,318 copying openpathsampling/engines/toy/features/instantaneous_temperature.py -> build/lib/openpathsampling/engines/toy/features 2024-10-04T02:48:22,321 copying openpathsampling/engines/toy/features/__init__.py -> build/lib/openpathsampling/engines/toy/features 2024-10-04T02:48:22,325 creating build/lib/openpathsampling/engines/external_snapshots/features 2024-10-04T02:48:22,326 copying openpathsampling/engines/external_snapshots/features/coordinates.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-10-04T02:48:22,329 copying openpathsampling/engines/external_snapshots/features/box_vectors.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-10-04T02:48:22,331 copying openpathsampling/engines/external_snapshots/features/__init__.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-10-04T02:48:22,334 copying openpathsampling/engines/external_snapshots/features/velocities.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-10-04T02:48:22,336 copying openpathsampling/engines/external_snapshots/features/file_info.py -> build/lib/openpathsampling/engines/external_snapshots/features 2024-10-04T02:48:22,339 creating build/lib/openpathsampling/engines/openmm/features 2024-10-04T02:48:22,341 copying openpathsampling/engines/openmm/features/instantaneous_temperature.py -> build/lib/openpathsampling/engines/openmm/features 2024-10-04T02:48:22,343 copying openpathsampling/engines/openmm/features/masses.py -> build/lib/openpathsampling/engines/openmm/features 2024-10-04T02:48:22,346 copying openpathsampling/engines/openmm/features/__init__.py -> build/lib/openpathsampling/engines/openmm/features 2024-10-04T02:48:22,348 copying openpathsampling/engines/openmm/features/traj_quantities.py -> build/lib/openpathsampling/engines/openmm/features 2024-10-04T02:48:22,351 creating build/lib/devtools/ci 2024-10-04T02:48:22,353 copying devtools/ci/push-docs-to-s3.py -> build/lib/devtools/ci 2024-10-04T02:48:22,357 creating build/lib/docs/copyfiles 2024-10-04T02:48:22,358 copying docs/copyfiles/copyfiles.py -> build/lib/docs/copyfiles 2024-10-04T02:48:22,361 creating build/lib/docs/sphinxext 2024-10-04T02:48:22,362 copying docs/sphinxext/notebook_sphinxext.py -> build/lib/docs/sphinxext 2024-10-04T02:48:22,365 copying docs/sphinxext/pandoc_sphinxext.py -> build/lib/docs/sphinxext 2024-10-04T02:48:22,368 running egg_info 2024-10-04T02:48:22,398 writing openpathsampling.egg-info/PKG-INFO 2024-10-04T02:48:22,403 writing dependency_links to openpathsampling.egg-info/dependency_links.txt 2024-10-04T02:48:22,405 writing requirements to openpathsampling.egg-info/requires.txt 2024-10-04T02:48:22,407 writing top-level names to openpathsampling.egg-info/top_level.txt 2024-10-04T02:48:22,482 reading manifest file 'openpathsampling.egg-info/SOURCES.txt' 2024-10-04T02:48:22,503 reading manifest template 'MANIFEST.in' 2024-10-04T02:48:22,504 warning: manifest_maker: MANIFEST.in, line 1: unknown action 'LICENSE' 2024-10-04T02:48:22,525 adding license file 'LICENSE' 2024-10-04T02:48:22,546 writing manifest file 'openpathsampling.egg-info/SOURCES.txt' 2024-10-04T02:48:22,573 copying openpathsampling/.gitignore -> build/lib/openpathsampling 2024-10-04T02:48:22,575 copying openpathsampling/README.md -> build/lib/openpathsampling 2024-10-04T02:48:22,577 copying openpathsampling/logging.conf -> build/lib/openpathsampling 2024-10-04T02:48:22,579 copying openpathsampling/pathmovers/README.md -> build/lib/openpathsampling/pathmovers 2024-10-04T02:48:22,581 copying openpathsampling/analysis/.gitignore -> build/lib/openpathsampling/analysis 2024-10-04T02:48:22,583 copying openpathsampling/experimental/README.md -> build/lib/openpathsampling/experimental 2024-10-04T02:48:22,585 copying openpathsampling/tests/.gitignore -> build/lib/openpathsampling/tests 2024-10-04T02:48:22,587 creating build/lib/openpathsampling/resources 2024-10-04T02:48:22,588 copying openpathsampling/resources/debug_logging.conf -> build/lib/openpathsampling/resources 2024-10-04T02:48:22,591 copying openpathsampling/resources/engine_debug.conf -> build/lib/openpathsampling/resources 2024-10-04T02:48:22,594 copying openpathsampling/resources/logging.conf -> build/lib/openpathsampling/resources 2024-10-04T02:48:22,596 copying openpathsampling/resources/vis.css -> build/lib/openpathsampling/resources 2024-10-04T02:48:22,598 copying openpathsampling/collectivevariables/README.md -> build/lib/openpathsampling/collectivevariables 2024-10-04T02:48:22,601 copying openpathsampling/ensembles/README.md -> build/lib/openpathsampling/ensembles 2024-10-04T02:48:22,603 copying openpathsampling/experimental/simstore/regressions/README.md -> build/lib/openpathsampling/experimental/simstore/regressions 2024-10-04T02:48:22,605 copying openpathsampling/tests/external_engine/Makefile -> build/lib/openpathsampling/tests/external_engine 2024-10-04T02:48:22,607 copying openpathsampling/tests/external_engine/engine.c -> build/lib/openpathsampling/tests/external_engine 2024-10-04T02:48:22,610 creating build/lib/openpathsampling/tests/test_data 2024-10-04T02:48:22,611 copying openpathsampling/tests/test_data/ala_small_traj.pdb -> build/lib/openpathsampling/tests/test_data 2024-10-04T02:48:22,633 copying openpathsampling/tests/test_data/tip4p_water.pdb -> build/lib/openpathsampling/tests/test_data 2024-10-04T02:48:22,635 creating build/lib/openpathsampling/tests/test_data/plumed_wrapper 2024-10-04T02:48:22,636 copying openpathsampling/tests/test_data/plumed_wrapper/AD_initial_frame.pdb -> build/lib/openpathsampling/tests/test_data/plumed_wrapper 2024-10-04T02:48:22,641 copying openpathsampling/tests/test_data/plumed_wrapper/AD_plumed_rmsd.pdb -> build/lib/openpathsampling/tests/test_data/plumed_wrapper 2024-10-04T02:48:22,644 creating build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-10-04T02:48:22,645 copying openpathsampling/tests/test_data/gromacs_engine/conf.gro -> build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-10-04T02:48:22,649 copying openpathsampling/tests/test_data/gromacs_engine/md.mdp -> build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-10-04T02:48:22,652 copying openpathsampling/tests/test_data/gromacs_engine/topol.top -> build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-10-04T02:48:22,654 copying openpathsampling/tests/test_data/gromacs_engine/traj.trr -> build/lib/openpathsampling/tests/test_data/gromacs_engine 2024-10-04T02:48:22,659 creating build/lib/openpathsampling/tests/test_data/reduce_box_vects 2024-10-04T02:48:22,661 copying openpathsampling/tests/test_data/reduce_box_vects/dna.gro -> build/lib/openpathsampling/tests/test_data/reduce_box_vects 2024-10-04T02:48:22,664 copying openpathsampling/tests/test_data/reduce_box_vects/dna.trr -> build/lib/openpathsampling/tests/test_data/reduce_box_vects 2024-10-04T02:48:22,667 creating build/lib/openpathsampling/tests/test_data/apis 2024-10-04T02:48:22,668 copying openpathsampling/tests/test_data/apis/ops1x0_api.txt -> build/lib/openpathsampling/tests/test_data/apis 2024-10-04T02:48:22,671 creating build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-10-04T02:48:22,672 copying openpathsampling/tests/test_data/gromacs_engine/project_trr/0000000.trr -> build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-10-04T02:48:22,678 copying openpathsampling/tests/test_data/gromacs_engine/project_trr/0000099.trr -> build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-10-04T02:48:22,714 copying openpathsampling/engines/external_snapshots/README.md -> build/lib/openpathsampling/engines/external_snapshots 2024-10-04T02:48:22,767 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-10-04T02:48:22,768 !! 2024-10-04T02:48:22,769 ******************************************************************************** 2024-10-04T02:48:22,770 Please avoid running ``setup.py`` directly. 2024-10-04T02:48:22,771 Instead, use pypa/build, pypa/installer or other 2024-10-04T02:48:22,771 standards-based tools. 2024-10-04T02:48:22,773 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-10-04T02:48:22,773 ******************************************************************************** 2024-10-04T02:48:22,775 !! 2024-10-04T02:48:22,775 self.initialize_options() 2024-10-04T02:48:22,798 installing to build/bdist.linux-armv7l/wheel 2024-10-04T02:48:22,799 running install 2024-10-04T02:48:22,824 running install_lib 2024-10-04T02:48:22,850 creating build/bdist.linux-armv7l/wheel 2024-10-04T02:48:22,853 creating build/bdist.linux-armv7l/wheel/examples 2024-10-04T02:48:22,855 creating build/bdist.linux-armv7l/wheel/examples/alanine_dipeptide_mstis 2024-10-04T02:48:22,857 copying build/lib/examples/alanine_dipeptide_mstis/alatools.py -> build/bdist.linux-armv7l/wheel/./examples/alanine_dipeptide_mstis 2024-10-04T02:48:22,860 creating build/bdist.linux-armv7l/wheel/examples/resources 2024-10-04T02:48:22,862 copying build/lib/examples/resources/toy_plot_helpers.py -> build/bdist.linux-armv7l/wheel/./examples/resources 2024-10-04T02:48:22,864 copying build/lib/examples/prep_example_data.py -> build/bdist.linux-armv7l/wheel/./examples 2024-10-04T02:48:22,868 creating build/bdist.linux-armv7l/wheel/openpathsampling 2024-10-04T02:48:22,870 copying build/lib/openpathsampling/ensemble.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:22,874 copying build/lib/openpathsampling/pathmover.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:22,879 creating build/bdist.linux-armv7l/wheel/openpathsampling/pathmovers 2024-10-04T02:48:22,881 copying build/lib/openpathsampling/pathmovers/move_strategies.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathmovers 2024-10-04T02:48:22,882 copying build/lib/openpathsampling/pathmovers/move_schemes.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathmovers 2024-10-04T02:48:22,885 copying build/lib/openpathsampling/pathmovers/README.md -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathmovers 2024-10-04T02:48:22,887 copying build/lib/openpathsampling/pathmovers/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathmovers 2024-10-04T02:48:22,889 copying build/lib/openpathsampling/pathmovers/spring_shooting.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathmovers 2024-10-04T02:48:22,891 copying build/lib/openpathsampling/treelogic.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:22,894 copying build/lib/openpathsampling/sample.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:22,898 creating build/bdist.linux-armv7l/wheel/openpathsampling/beta 2024-10-04T02:48:22,899 copying build/lib/openpathsampling/beta/hooks.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/beta 2024-10-04T02:48:22,902 copying build/lib/openpathsampling/beta/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/beta 2024-10-04T02:48:22,904 copying build/lib/openpathsampling/volume.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:22,906 copying build/lib/openpathsampling/collectivevariable.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:22,910 creating build/bdist.linux-armv7l/wheel/openpathsampling/analysis 2024-10-04T02:48:22,912 copying build/lib/openpathsampling/analysis/replica_network.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis 2024-10-04T02:48:22,915 copying build/lib/openpathsampling/analysis/sshooting_analysis.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis 2024-10-04T02:48:22,917 copying build/lib/openpathsampling/analysis/shooting_point_analysis.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis 2024-10-04T02:48:22,920 copying build/lib/openpathsampling/analysis/path_histogram.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis 2024-10-04T02:48:22,923 copying build/lib/openpathsampling/analysis/tools.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis 2024-10-04T02:48:22,925 copying build/lib/openpathsampling/analysis/ensemble_representation.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis 2024-10-04T02:48:22,927 copying build/lib/openpathsampling/analysis/channel_analysis.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis 2024-10-04T02:48:22,930 copying build/lib/openpathsampling/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis 2024-10-04T02:48:22,932 copying build/lib/openpathsampling/analysis/reactive_flux_analysis.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis 2024-10-04T02:48:22,935 copying build/lib/openpathsampling/analysis/trajectory_transition_analysis.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis 2024-10-04T02:48:22,938 copying build/lib/openpathsampling/analysis/.gitignore -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis 2024-10-04T02:48:22,941 creating build/bdist.linux-armv7l/wheel/openpathsampling/analysis/tis 2024-10-04T02:48:22,942 copying build/lib/openpathsampling/analysis/tis/standard_analysis.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis/tis 2024-10-04T02:48:22,945 copying build/lib/openpathsampling/analysis/tis/flux.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis/tis 2024-10-04T02:48:22,948 copying build/lib/openpathsampling/analysis/tis/misc.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis/tis 2024-10-04T02:48:22,950 copying build/lib/openpathsampling/analysis/tis/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis/tis 2024-10-04T02:48:22,953 copying build/lib/openpathsampling/analysis/tis/crossing_probability.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis/tis 2024-10-04T02:48:22,955 copying build/lib/openpathsampling/analysis/tis/core.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/analysis/tis 2024-10-04T02:48:22,958 copying build/lib/openpathsampling/shooting.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:22,960 copying build/lib/openpathsampling/snapshot_modifier.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:22,963 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental 2024-10-04T02:48:22,965 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental/path_tree 2024-10-04T02:48:22,967 copying build/lib/openpathsampling/experimental/path_tree/svg.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/path_tree 2024-10-04T02:48:22,969 copying build/lib/openpathsampling/experimental/path_tree/path_tree.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/path_tree 2024-10-04T02:48:22,972 copying build/lib/openpathsampling/experimental/path_tree/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/path_tree 2024-10-04T02:48:22,974 copying build/lib/openpathsampling/experimental/path_tree/mpl.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/path_tree 2024-10-04T02:48:22,976 copying build/lib/openpathsampling/experimental/path_tree/options.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/path_tree 2024-10-04T02:48:22,978 copying build/lib/openpathsampling/experimental/path_tree/plotter.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/path_tree 2024-10-04T02:48:22,980 copying build/lib/openpathsampling/experimental/README.md -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental 2024-10-04T02:48:22,982 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental/storage 2024-10-04T02:48:22,983 copying build/lib/openpathsampling/experimental/storage/test_monkey_patches.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:22,985 copying build/lib/openpathsampling/experimental/storage/test_pathsampling.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:22,987 copying build/lib/openpathsampling/experimental/storage/test_snapshots_table.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:22,989 copying build/lib/openpathsampling/experimental/storage/test_regressions.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:22,990 copying build/lib/openpathsampling/experimental/storage/test_mdtraj_json.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:22,992 copying build/lib/openpathsampling/experimental/storage/snapshots.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:22,994 copying build/lib/openpathsampling/experimental/storage/mdtraj_json.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:22,996 copying build/lib/openpathsampling/experimental/storage/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:22,998 copying build/lib/openpathsampling/experimental/storage/simtk_unit.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:23,000 copying build/lib/openpathsampling/experimental/storage/snapshots_table.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:23,002 copying build/lib/openpathsampling/experimental/storage/monkey_patches.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:23,004 copying build/lib/openpathsampling/experimental/storage/test_simtk_unit.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:23,005 copying build/lib/openpathsampling/experimental/storage/test_collective_variables.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:23,008 copying build/lib/openpathsampling/experimental/storage/ops_storage.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:23,010 copying build/lib/openpathsampling/experimental/storage/test_snapshot_integrations.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:23,012 copying build/lib/openpathsampling/experimental/storage/collective_variables.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:23,014 copying build/lib/openpathsampling/experimental/storage/test_snapshots.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/storage 2024-10-04T02:48:23,016 copying build/lib/openpathsampling/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental 2024-10-04T02:48:23,018 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore 2024-10-04T02:48:23,019 copying build/lib/openpathsampling/experimental/simstore/test_storable_function.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,022 copying build/lib/openpathsampling/experimental/simstore/serialization.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,024 copying build/lib/openpathsampling/experimental/simstore/type_ident.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,026 copying build/lib/openpathsampling/experimental/simstore/test_type_ident.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,028 copying build/lib/openpathsampling/experimental/simstore/test_storage.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,030 copying build/lib/openpathsampling/experimental/simstore/test_custom_json.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,032 copying build/lib/openpathsampling/experimental/simstore/test_sql_backend.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,034 copying build/lib/openpathsampling/experimental/simstore/test_tags_table.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,036 copying build/lib/openpathsampling/experimental/simstore/storable_functions.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,040 creating build/bdist.linux-armv7l/wheel/openpathsampling/experimental/simstore/regressions 2024-10-04T02:48:23,041 copying build/lib/openpathsampling/experimental/simstore/regressions/test_numpy_sfrs.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore/regressions 2024-10-04T02:48:23,043 copying build/lib/openpathsampling/experimental/simstore/regressions/README.md -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore/regressions 2024-10-04T02:48:23,045 copying build/lib/openpathsampling/experimental/simstore/test_dict_serialization_helpers.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,047 copying build/lib/openpathsampling/experimental/simstore/callable_codec.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,049 copying build/lib/openpathsampling/experimental/simstore/test_serialization.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,051 copying build/lib/openpathsampling/experimental/simstore/tools.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,053 copying build/lib/openpathsampling/experimental/simstore/proxy.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,055 copying build/lib/openpathsampling/experimental/simstore/sql_backend.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,057 copying build/lib/openpathsampling/experimental/simstore/test_class_info.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,059 copying build/lib/openpathsampling/experimental/simstore/test_storable_function_integration.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,061 copying build/lib/openpathsampling/experimental/simstore/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,063 copying build/lib/openpathsampling/experimental/simstore/test_backend.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,065 copying build/lib/openpathsampling/experimental/simstore/serialization_helpers.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,067 copying build/lib/openpathsampling/experimental/simstore/my_types.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,069 copying build/lib/openpathsampling/experimental/simstore/dict_serialization_helpers.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,070 copying build/lib/openpathsampling/experimental/simstore/custom_json.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,073 copying build/lib/openpathsampling/experimental/simstore/storage.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,075 copying build/lib/openpathsampling/experimental/simstore/uuids.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,077 copying build/lib/openpathsampling/experimental/simstore/tags_table.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,079 copying build/lib/openpathsampling/experimental/simstore/test_uuids.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,081 copying build/lib/openpathsampling/experimental/simstore/memory_backend.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,083 copying build/lib/openpathsampling/experimental/simstore/test_utils.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,085 copying build/lib/openpathsampling/experimental/simstore/class_lookup.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,087 copying build/lib/openpathsampling/experimental/simstore/attribute_handlers.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,089 copying build/lib/openpathsampling/experimental/simstore/class_info.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,092 copying build/lib/openpathsampling/experimental/simstore/wrapper.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,094 copying build/lib/openpathsampling/experimental/simstore/backend.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,095 copying build/lib/openpathsampling/experimental/simstore/test_serialization_helpers.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,098 copying build/lib/openpathsampling/experimental/simstore/test_attribute_handlers.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,099 copying build/lib/openpathsampling/experimental/simstore/test_tools.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,101 copying build/lib/openpathsampling/experimental/simstore/test_callable_codec.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/experimental/simstore 2024-10-04T02:48:23,104 copying build/lib/openpathsampling/tools.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,107 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests 2024-10-04T02:48:23,108 copying build/lib/openpathsampling/tests/test_gromacs_engine.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,119 copying build/lib/openpathsampling/tests/test_deprecations.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,121 copying build/lib/openpathsampling/tests/test_openmm_engine.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,124 copying build/lib/openpathsampling/tests/test_trajectory_transition_analysis.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,126 copying build/lib/openpathsampling/tests/test_volume.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,128 copying build/lib/openpathsampling/tests/test_spring_shooting.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,131 copying build/lib/openpathsampling/tests/test_shooting.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,133 copying build/lib/openpathsampling/tests/test_shared.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,134 copying build/lib/openpathsampling/tests/test_sshooting_analysis.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,137 copying build/lib/openpathsampling/tests/test_reactive_flux_analysis.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,139 copying build/lib/openpathsampling/tests/test_storage.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,142 copying build/lib/openpathsampling/tests/test_helpers.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,144 copying build/lib/openpathsampling/tests/test_collectivevariable.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,146 copying build/lib/openpathsampling/tests/test_toy_dynamics.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,149 copying build/lib/openpathsampling/tests/test_transitions.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,151 copying build/lib/openpathsampling/tests/test_pathsimulator.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,154 copying build/lib/openpathsampling/tests/test_openmm_tools.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,156 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis 2024-10-04T02:48:23,157 copying build/lib/openpathsampling/tests/analysis/conftest.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/analysis 2024-10-04T02:48:23,160 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/analysis/utils 2024-10-04T02:48:23,161 copying build/lib/openpathsampling/tests/analysis/utils/fixture_classes.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/analysis/utils 2024-10-04T02:48:23,163 copying build/lib/openpathsampling/tests/analysis/utils/test_mock_movers.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/analysis/utils 2024-10-04T02:48:23,166 copying build/lib/openpathsampling/tests/analysis/utils/mock_movers.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/analysis/utils 2024-10-04T02:48:23,168 copying build/lib/openpathsampling/tests/analysis/utils/test_fixture_classes.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/analysis/utils 2024-10-04T02:48:23,170 copying build/lib/openpathsampling/tests/analysis/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/analysis/utils 2024-10-04T02:48:23,172 copying build/lib/openpathsampling/tests/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/analysis 2024-10-04T02:48:23,173 copying build/lib/openpathsampling/tests/test_pyemma_cv.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,175 copying build/lib/openpathsampling/tests/test_mdtraj_support.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,177 copying build/lib/openpathsampling/tests/test_wham.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,179 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/external_engine 2024-10-04T02:48:23,180 copying build/lib/openpathsampling/tests/external_engine/microtest.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/external_engine 2024-10-04T02:48:23,182 copying build/lib/openpathsampling/tests/external_engine/engine.c -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/external_engine 2024-10-04T02:48:23,184 copying build/lib/openpathsampling/tests/external_engine/Makefile -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/external_engine 2024-10-04T02:48:23,186 copying build/lib/openpathsampling/tests/test_external_snapshots.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,188 copying build/lib/openpathsampling/tests/test_bias_function.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,191 copying build/lib/openpathsampling/tests/test_integration_tools.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,193 copying build/lib/openpathsampling/tests/test_pathmover.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,196 copying build/lib/openpathsampling/tests/test_progress.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,197 copying build/lib/openpathsampling/tests/test_movescheme.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,200 copying build/lib/openpathsampling/tests/test_tis_analysis.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,203 copying build/lib/openpathsampling/tests/test_toy_features.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,205 copying build/lib/openpathsampling/tests/test_shooting_point_analysis.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,207 copying build/lib/openpathsampling/tests/test_sample.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,209 copying build/lib/openpathsampling/tests/test_ensemble.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,213 copying build/lib/openpathsampling/tests/test_external_engine.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,216 copying build/lib/openpathsampling/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,217 copying build/lib/openpathsampling/tests/test_range_logic.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,219 copying build/lib/openpathsampling/tests/test_trajectory.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,222 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data 2024-10-04T02:48:23,224 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/plumed_wrapper 2024-10-04T02:48:23,225 copying build/lib/openpathsampling/tests/test_data/plumed_wrapper/AD_plumed_rmsd.pdb -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data/plumed_wrapper 2024-10-04T02:48:23,227 copying build/lib/openpathsampling/tests/test_data/plumed_wrapper/AD_initial_frame.pdb -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data/plumed_wrapper 2024-10-04T02:48:23,232 copying build/lib/openpathsampling/tests/test_data/ala_small_traj.pdb -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data 2024-10-04T02:48:23,256 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine 2024-10-04T02:48:23,258 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-10-04T02:48:23,260 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr/0000000.trr -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-10-04T02:48:23,267 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/project_trr/0000099.trr -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data/gromacs_engine/project_trr 2024-10-04T02:48:23,300 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/topol.top -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data/gromacs_engine 2024-10-04T02:48:23,302 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/traj.trr -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data/gromacs_engine 2024-10-04T02:48:23,307 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/conf.gro -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data/gromacs_engine 2024-10-04T02:48:23,310 copying build/lib/openpathsampling/tests/test_data/gromacs_engine/md.mdp -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data/gromacs_engine 2024-10-04T02:48:23,312 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/reduce_box_vects 2024-10-04T02:48:23,314 copying build/lib/openpathsampling/tests/test_data/reduce_box_vects/dna.gro -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data/reduce_box_vects 2024-10-04T02:48:23,317 copying build/lib/openpathsampling/tests/test_data/reduce_box_vects/dna.trr -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data/reduce_box_vects 2024-10-04T02:48:23,320 copying build/lib/openpathsampling/tests/test_data/tip4p_water.pdb -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data 2024-10-04T02:48:23,322 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/test_data/apis 2024-10-04T02:48:23,323 copying build/lib/openpathsampling/tests/test_data/apis/ops1x0_api.txt -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/test_data/apis 2024-10-04T02:48:23,326 copying build/lib/openpathsampling/tests/test_interface_set.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,328 copying build/lib/openpathsampling/tests/test_channel_analysis.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,330 copying build/lib/openpathsampling/tests/test_snapshot.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,332 copying build/lib/openpathsampling/tests/test_features.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,334 copying build/lib/openpathsampling/tests/test_openmm_snapshot.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,336 copying build/lib/openpathsampling/tests/test_histogram.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,338 copying build/lib/openpathsampling/tests/test_rng.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,341 creating build/bdist.linux-armv7l/wheel/openpathsampling/tests/pathsimulators 2024-10-04T02:48:23,342 copying build/lib/openpathsampling/tests/pathsimulators/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/pathsimulators 2024-10-04T02:48:23,344 copying build/lib/openpathsampling/tests/pathsimulators/test_hooks.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests/pathsimulators 2024-10-04T02:48:23,346 copying build/lib/openpathsampling/tests/test_attribute.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,349 copying build/lib/openpathsampling/tests/test_snapshot_modifier.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,352 copying build/lib/openpathsampling/tests/test_ms_outer_interface.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,355 copying build/lib/openpathsampling/tests/.gitignore -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,357 copying build/lib/openpathsampling/tests/test_resampling_statistics.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,361 copying build/lib/openpathsampling/tests/test_sshooting_simulator.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,363 copying build/lib/openpathsampling/tests/test_visit_all_states.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,366 copying build/lib/openpathsampling/tests/test_network.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,370 copying build/lib/openpathsampling/tests/test_movestrategy.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,375 copying build/lib/openpathsampling/tests/test_netcdfplus_base.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,378 copying build/lib/openpathsampling/tests/test_dynamicsengine.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,381 copying build/lib/openpathsampling/tests/test_lookup_function.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,384 copying build/lib/openpathsampling/tests/test_path_histogram.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,387 copying build/lib/openpathsampling/tests/test_api.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,390 copying build/lib/openpathsampling/tests/test_part_in_b_tps.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,393 copying build/lib/openpathsampling/tests/test_plumed_wrapper.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,396 copying build/lib/openpathsampling/tests/test_tools.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/tests 2024-10-04T02:48:23,399 copying build/lib/openpathsampling/_installed_version.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,401 copying build/lib/openpathsampling/README.md -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,404 copying build/lib/openpathsampling/step_visualizer_2D.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,407 copying build/lib/openpathsampling/integration_tools.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,410 creating build/bdist.linux-armv7l/wheel/openpathsampling/storage 2024-10-04T02:48:23,413 creating build/bdist.linux-armv7l/wheel/openpathsampling/storage/stores 2024-10-04T02:48:23,415 copying build/lib/openpathsampling/storage/stores/snapshot_wrapper.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage/stores 2024-10-04T02:48:23,419 copying build/lib/openpathsampling/storage/stores/sample.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage/stores 2024-10-04T02:48:23,422 copying build/lib/openpathsampling/storage/stores/mcstep.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage/stores 2024-10-04T02:48:23,425 copying build/lib/openpathsampling/storage/stores/collectivevariable.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage/stores 2024-10-04T02:48:23,427 copying build/lib/openpathsampling/storage/stores/snapshot_base.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage/stores 2024-10-04T02:48:23,430 copying build/lib/openpathsampling/storage/stores/pathsimulator.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage/stores 2024-10-04T02:48:23,433 copying build/lib/openpathsampling/storage/stores/movechange.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage/stores 2024-10-04T02:48:23,436 copying build/lib/openpathsampling/storage/stores/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage/stores 2024-10-04T02:48:23,439 copying build/lib/openpathsampling/storage/stores/snapshot_feature.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage/stores 2024-10-04T02:48:23,442 copying build/lib/openpathsampling/storage/stores/snapshot_value.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage/stores 2024-10-04T02:48:23,445 copying build/lib/openpathsampling/storage/stores/trajectory.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage/stores 2024-10-04T02:48:23,447 copying build/lib/openpathsampling/storage/util.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage 2024-10-04T02:48:23,450 copying build/lib/openpathsampling/storage/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage 2024-10-04T02:48:23,453 copying build/lib/openpathsampling/storage/storage.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage 2024-10-04T02:48:23,456 copying build/lib/openpathsampling/storage/distributed.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/storage 2024-10-04T02:48:23,458 creating build/bdist.linux-armv7l/wheel/openpathsampling/high_level 2024-10-04T02:48:23,460 copying build/lib/openpathsampling/high_level/move_scheme.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/high_level 2024-10-04T02:48:23,463 copying build/lib/openpathsampling/high_level/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/high_level 2024-10-04T02:48:23,466 copying build/lib/openpathsampling/high_level/interface_set.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/high_level 2024-10-04T02:48:23,468 copying build/lib/openpathsampling/high_level/ms_outer_interface.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/high_level 2024-10-04T02:48:23,471 copying build/lib/openpathsampling/high_level/network.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/high_level 2024-10-04T02:48:23,474 copying build/lib/openpathsampling/high_level/part_in_b_tps.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/high_level 2024-10-04T02:48:23,477 copying build/lib/openpathsampling/high_level/move_strategy.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/high_level 2024-10-04T02:48:23,480 copying build/lib/openpathsampling/high_level/transition.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/high_level 2024-10-04T02:48:23,484 creating build/bdist.linux-armv7l/wheel/openpathsampling/resources 2024-10-04T02:48:23,485 copying build/lib/openpathsampling/resources/vis.css -> build/bdist.linux-armv7l/wheel/./openpathsampling/resources 2024-10-04T02:48:23,487 copying build/lib/openpathsampling/resources/debug_logging.conf -> build/bdist.linux-armv7l/wheel/./openpathsampling/resources 2024-10-04T02:48:23,490 copying build/lib/openpathsampling/resources/engine_debug.conf -> build/bdist.linux-armv7l/wheel/./openpathsampling/resources 2024-10-04T02:48:23,492 copying build/lib/openpathsampling/resources/logging.conf -> build/bdist.linux-armv7l/wheel/./openpathsampling/resources 2024-10-04T02:48:23,494 copying build/lib/openpathsampling/movechange.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,497 copying build/lib/openpathsampling/visualize.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,501 copying build/lib/openpathsampling/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,504 copying build/lib/openpathsampling/logging.conf -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,506 copying build/lib/openpathsampling/progress.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,509 copying build/lib/openpathsampling/range_logic.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,513 creating build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus 2024-10-04T02:48:23,515 creating build/bdist.linux-armv7l/wheel/openpathsampling/netcdfplus/stores 2024-10-04T02:48:23,517 copying build/lib/openpathsampling/netcdfplus/stores/dict.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus/stores 2024-10-04T02:48:23,521 copying build/lib/openpathsampling/netcdfplus/stores/indexed.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus/stores 2024-10-04T02:48:23,523 copying build/lib/openpathsampling/netcdfplus/stores/named.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus/stores 2024-10-04T02:48:23,526 copying build/lib/openpathsampling/netcdfplus/stores/attribute.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus/stores 2024-10-04T02:48:23,529 copying build/lib/openpathsampling/netcdfplus/stores/variable.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus/stores 2024-10-04T02:48:23,532 copying build/lib/openpathsampling/netcdfplus/stores/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus/stores 2024-10-04T02:48:23,535 copying build/lib/openpathsampling/netcdfplus/stores/value.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus/stores 2024-10-04T02:48:23,538 copying build/lib/openpathsampling/netcdfplus/stores/object.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus/stores 2024-10-04T02:48:23,542 copying build/lib/openpathsampling/netcdfplus/netcdfplus.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus 2024-10-04T02:48:23,546 copying build/lib/openpathsampling/netcdfplus/base.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus 2024-10-04T02:48:23,549 copying build/lib/openpathsampling/netcdfplus/util.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus 2024-10-04T02:48:23,551 copying build/lib/openpathsampling/netcdfplus/proxy.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus 2024-10-04T02:48:23,553 copying build/lib/openpathsampling/netcdfplus/dictify.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus 2024-10-04T02:48:23,556 copying build/lib/openpathsampling/netcdfplus/attribute.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus 2024-10-04T02:48:23,559 copying build/lib/openpathsampling/netcdfplus/cache.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus 2024-10-04T02:48:23,561 copying build/lib/openpathsampling/netcdfplus/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus 2024-10-04T02:48:23,563 copying build/lib/openpathsampling/netcdfplus/chaindict.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus 2024-10-04T02:48:23,566 copying build/lib/openpathsampling/netcdfplus/version.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/netcdfplus 2024-10-04T02:48:23,567 copying build/lib/openpathsampling/rng.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,569 copying build/lib/openpathsampling/version.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,572 creating build/bdist.linux-armv7l/wheel/openpathsampling/pathsimulators 2024-10-04T02:48:23,573 copying build/lib/openpathsampling/pathsimulators/sshooting_simulator.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathsimulators 2024-10-04T02:48:23,575 copying build/lib/openpathsampling/pathsimulators/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathsimulators 2024-10-04T02:48:23,577 copying build/lib/openpathsampling/pathsimulators/path_sampling.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathsimulators 2024-10-04T02:48:23,579 copying build/lib/openpathsampling/pathsimulators/direct_md.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathsimulators 2024-10-04T02:48:23,581 copying build/lib/openpathsampling/pathsimulators/path_simulator.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathsimulators 2024-10-04T02:48:23,583 copying build/lib/openpathsampling/pathsimulators/shoot_snapshots.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathsimulators 2024-10-04T02:48:23,586 copying build/lib/openpathsampling/pathsimulators/bootstrap_init_conds.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathsimulators 2024-10-04T02:48:23,588 copying build/lib/openpathsampling/pathsimulators/reactive_flux.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/pathsimulators 2024-10-04T02:48:23,590 copying build/lib/openpathsampling/.gitignore -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,592 copying build/lib/openpathsampling/pathmover_inout.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,594 copying build/lib/openpathsampling/ops_logging.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,597 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines 2024-10-04T02:48:23,598 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/features 2024-10-04T02:48:23,600 copying build/lib/openpathsampling/engines/features/base.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/features 2024-10-04T02:48:23,603 copying build/lib/openpathsampling/engines/features/coordinates.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/features 2024-10-04T02:48:23,604 copying build/lib/openpathsampling/engines/features/numpydoctools.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/features 2024-10-04T02:48:23,606 copying build/lib/openpathsampling/engines/features/kinetics.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/features 2024-10-04T02:48:23,608 copying build/lib/openpathsampling/engines/features/box_vectors.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/features 2024-10-04T02:48:23,610 copying build/lib/openpathsampling/engines/features/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/features 2024-10-04T02:48:23,612 copying build/lib/openpathsampling/engines/features/statics.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/features 2024-10-04T02:48:23,614 copying build/lib/openpathsampling/engines/features/velocities.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/features 2024-10-04T02:48:23,616 copying build/lib/openpathsampling/engines/features/engine.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/features 2024-10-04T02:48:23,618 copying build/lib/openpathsampling/engines/features/shared.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/features 2024-10-04T02:48:23,620 copying build/lib/openpathsampling/engines/features/topology.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/features 2024-10-04T02:48:23,622 copying build/lib/openpathsampling/engines/delayedinterrupt.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines 2024-10-04T02:48:23,624 copying build/lib/openpathsampling/engines/external_engine.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines 2024-10-04T02:48:23,627 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/gromacs 2024-10-04T02:48:23,628 copying build/lib/openpathsampling/engines/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/gromacs 2024-10-04T02:48:23,630 copying build/lib/openpathsampling/engines/gromacs/engine.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/gromacs 2024-10-04T02:48:23,633 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy 2024-10-04T02:48:23,635 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/toy/features 2024-10-04T02:48:23,636 copying build/lib/openpathsampling/engines/toy/features/instantaneous_temperature.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/toy/features 2024-10-04T02:48:23,638 copying build/lib/openpathsampling/engines/toy/features/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/toy/features 2024-10-04T02:48:23,640 copying build/lib/openpathsampling/engines/toy/integrators.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/toy 2024-10-04T02:48:23,642 copying build/lib/openpathsampling/engines/toy/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/toy 2024-10-04T02:48:23,644 copying build/lib/openpathsampling/engines/toy/snapshot.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/toy 2024-10-04T02:48:23,646 copying build/lib/openpathsampling/engines/toy/engine.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/toy 2024-10-04T02:48:23,648 copying build/lib/openpathsampling/engines/toy/topology.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/toy 2024-10-04T02:48:23,649 copying build/lib/openpathsampling/engines/toy/pes.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/toy 2024-10-04T02:48:23,651 copying build/lib/openpathsampling/engines/dynamics_engine.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines 2024-10-04T02:48:23,655 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots 2024-10-04T02:48:23,656 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/external_snapshots/features 2024-10-04T02:48:23,658 copying build/lib/openpathsampling/engines/external_snapshots/features/coordinates.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/external_snapshots/features 2024-10-04T02:48:23,660 copying build/lib/openpathsampling/engines/external_snapshots/features/box_vectors.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/external_snapshots/features 2024-10-04T02:48:23,661 copying build/lib/openpathsampling/engines/external_snapshots/features/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/external_snapshots/features 2024-10-04T02:48:23,663 copying build/lib/openpathsampling/engines/external_snapshots/features/velocities.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/external_snapshots/features 2024-10-04T02:48:23,665 copying build/lib/openpathsampling/engines/external_snapshots/features/file_info.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/external_snapshots/features 2024-10-04T02:48:23,667 copying build/lib/openpathsampling/engines/external_snapshots/README.md -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/external_snapshots 2024-10-04T02:48:23,669 copying build/lib/openpathsampling/engines/external_snapshots/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/external_snapshots 2024-10-04T02:48:23,671 copying build/lib/openpathsampling/engines/external_snapshots/snapshot.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/external_snapshots 2024-10-04T02:48:23,673 copying build/lib/openpathsampling/engines/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines 2024-10-04T02:48:23,675 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm 2024-10-04T02:48:23,677 creating build/bdist.linux-armv7l/wheel/openpathsampling/engines/openmm/features 2024-10-04T02:48:23,678 copying build/lib/openpathsampling/engines/openmm/features/instantaneous_temperature.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/openmm/features 2024-10-04T02:48:23,680 copying build/lib/openpathsampling/engines/openmm/features/masses.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/openmm/features 2024-10-04T02:48:23,682 copying build/lib/openpathsampling/engines/openmm/features/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/openmm/features 2024-10-04T02:48:23,684 copying build/lib/openpathsampling/engines/openmm/features/traj_quantities.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/openmm/features 2024-10-04T02:48:23,686 copying build/lib/openpathsampling/engines/openmm/tools.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/openmm 2024-10-04T02:48:23,688 copying build/lib/openpathsampling/engines/openmm/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/openmm 2024-10-04T02:48:23,690 copying build/lib/openpathsampling/engines/openmm/snapshot.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/openmm 2024-10-04T02:48:23,692 copying build/lib/openpathsampling/engines/openmm/engine.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/openmm 2024-10-04T02:48:23,694 copying build/lib/openpathsampling/engines/openmm/topology.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines/openmm 2024-10-04T02:48:23,696 copying build/lib/openpathsampling/engines/snapshot.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines 2024-10-04T02:48:23,698 copying build/lib/openpathsampling/engines/trajectory.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines 2024-10-04T02:48:23,701 copying build/lib/openpathsampling/engines/topology.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/engines 2024-10-04T02:48:23,703 creating build/bdist.linux-armv7l/wheel/openpathsampling/numerics 2024-10-04T02:48:23,704 copying build/lib/openpathsampling/numerics/wham.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/numerics 2024-10-04T02:48:23,707 copying build/lib/openpathsampling/numerics/resampling_statistics.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/numerics 2024-10-04T02:48:23,709 copying build/lib/openpathsampling/numerics/histogram.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/numerics 2024-10-04T02:48:23,711 copying build/lib/openpathsampling/numerics/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/numerics 2024-10-04T02:48:23,713 copying build/lib/openpathsampling/numerics/lookup_function.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/numerics 2024-10-04T02:48:23,715 copying build/lib/openpathsampling/deprecations.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,717 copying build/lib/openpathsampling/bias_function.py -> build/bdist.linux-armv7l/wheel/./openpathsampling 2024-10-04T02:48:23,720 creating build/bdist.linux-armv7l/wheel/openpathsampling/collectivevariables 2024-10-04T02:48:23,721 copying build/lib/openpathsampling/collectivevariables/plumed_wrapper.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/collectivevariables 2024-10-04T02:48:23,724 copying build/lib/openpathsampling/collectivevariables/README.md -> build/bdist.linux-armv7l/wheel/./openpathsampling/collectivevariables 2024-10-04T02:48:23,725 copying build/lib/openpathsampling/collectivevariables/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/collectivevariables 2024-10-04T02:48:23,728 creating build/bdist.linux-armv7l/wheel/openpathsampling/strategies 2024-10-04T02:48:23,729 copying build/lib/openpathsampling/strategies/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/strategies 2024-10-04T02:48:23,731 creating build/bdist.linux-armv7l/wheel/openpathsampling/ensembles 2024-10-04T02:48:23,732 copying build/lib/openpathsampling/ensembles/README.md -> build/bdist.linux-armv7l/wheel/./openpathsampling/ensembles 2024-10-04T02:48:23,734 copying build/lib/openpathsampling/ensembles/__init__.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/ensembles 2024-10-04T02:48:23,736 copying build/lib/openpathsampling/ensembles/visit_all_states.py -> build/bdist.linux-armv7l/wheel/./openpathsampling/ensembles 2024-10-04T02:48:23,738 creating build/bdist.linux-armv7l/wheel/devtools 2024-10-04T02:48:23,740 creating build/bdist.linux-armv7l/wheel/devtools/ci 2024-10-04T02:48:23,741 copying build/lib/devtools/ci/push-docs-to-s3.py -> build/bdist.linux-armv7l/wheel/./devtools/ci 2024-10-04T02:48:23,743 copying build/lib/devtools/autorelease_check.py -> build/bdist.linux-armv7l/wheel/./devtools 2024-10-04T02:48:23,745 copying build/lib/devtools/setup_cfg_reqs.py -> build/bdist.linux-armv7l/wheel/./devtools 2024-10-04T02:48:23,748 creating build/bdist.linux-armv7l/wheel/docs 2024-10-04T02:48:23,749 creating build/bdist.linux-armv7l/wheel/docs/copyfiles 2024-10-04T02:48:23,751 copying build/lib/docs/copyfiles/copyfiles.py -> build/bdist.linux-armv7l/wheel/./docs/copyfiles 2024-10-04T02:48:23,753 copying build/lib/docs/premake.py -> build/bdist.linux-armv7l/wheel/./docs 2024-10-04T02:48:23,755 creating build/bdist.linux-armv7l/wheel/docs/sphinxext 2024-10-04T02:48:23,756 copying build/lib/docs/sphinxext/notebook_sphinxext.py -> build/bdist.linux-armv7l/wheel/./docs/sphinxext 2024-10-04T02:48:23,758 copying build/lib/docs/sphinxext/pandoc_sphinxext.py -> build/bdist.linux-armv7l/wheel/./docs/sphinxext 2024-10-04T02:48:23,760 copying build/lib/docs/conf.py -> build/bdist.linux-armv7l/wheel/./docs 2024-10-04T02:48:23,762 running install_egg_info 2024-10-04T02:48:23,795 Copying openpathsampling.egg-info to build/bdist.linux-armv7l/wheel/./openpathsampling-1.7.0-py3.11.egg-info 2024-10-04T02:48:23,806 running install_scripts 2024-10-04T02:48:23,822 creating build/bdist.linux-armv7l/wheel/openpathsampling-1.7.0.dist-info/WHEEL 2024-10-04T02:48:23,824 creating '/tmp/pip-wheel-jewk9zxm/openpathsampling-1.7.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-10-04T02:48:23,826 adding 'devtools/autorelease_check.py' 2024-10-04T02:48:23,828 adding 'devtools/setup_cfg_reqs.py' 2024-10-04T02:48:23,829 adding 'devtools/ci/push-docs-to-s3.py' 2024-10-04T02:48:23,832 adding 'docs/conf.py' 2024-10-04T02:48:23,834 adding 'docs/premake.py' 2024-10-04T02:48:23,836 adding 'docs/copyfiles/copyfiles.py' 2024-10-04T02:48:23,838 adding 'docs/sphinxext/notebook_sphinxext.py' 2024-10-04T02:48:23,840 adding 'docs/sphinxext/pandoc_sphinxext.py' 2024-10-04T02:48:23,843 adding 'examples/prep_example_data.py' 2024-10-04T02:48:23,845 adding 'examples/alanine_dipeptide_mstis/alatools.py' 2024-10-04T02:48:23,847 adding 'examples/resources/toy_plot_helpers.py' 2024-10-04T02:48:23,849 adding 'openpathsampling/.gitignore' 2024-10-04T02:48:23,851 adding 'openpathsampling/README.md' 2024-10-04T02:48:23,852 adding 'openpathsampling/__init__.py' 2024-10-04T02:48:23,853 adding 'openpathsampling/_installed_version.py' 2024-10-04T02:48:23,855 adding 'openpathsampling/bias_function.py' 2024-10-04T02:48:23,858 adding 'openpathsampling/collectivevariable.py' 2024-10-04T02:48:23,860 adding 'openpathsampling/deprecations.py' 2024-10-04T02:48:23,872 adding 'openpathsampling/ensemble.py' 2024-10-04T02:48:23,874 adding 'openpathsampling/integration_tools.py' 2024-10-04T02:48:23,876 adding 'openpathsampling/logging.conf' 2024-10-04T02:48:23,878 adding 'openpathsampling/movechange.py' 2024-10-04T02:48:23,880 adding 'openpathsampling/ops_logging.py' 2024-10-04T02:48:23,890 adding 'openpathsampling/pathmover.py' 2024-10-04T02:48:23,893 adding 'openpathsampling/pathmover_inout.py' 2024-10-04T02:48:23,894 adding 'openpathsampling/progress.py' 2024-10-04T02:48:23,896 adding 'openpathsampling/range_logic.py' 2024-10-04T02:48:23,897 adding 'openpathsampling/rng.py' 2024-10-04T02:48:23,902 adding 'openpathsampling/sample.py' 2024-10-04T02:48:23,904 adding 'openpathsampling/shooting.py' 2024-10-04T02:48:23,906 adding 'openpathsampling/snapshot_modifier.py' 2024-10-04T02:48:23,908 adding 'openpathsampling/step_visualizer_2D.py' 2024-10-04T02:48:23,909 adding 'openpathsampling/tools.py' 2024-10-04T02:48:23,912 adding 'openpathsampling/treelogic.py' 2024-10-04T02:48:23,913 adding 'openpathsampling/version.py' 2024-10-04T02:48:23,922 adding 'openpathsampling/visualize.py' 2024-10-04T02:48:23,926 adding 'openpathsampling/volume.py' 2024-10-04T02:48:23,927 adding 'openpathsampling/analysis/.gitignore' 2024-10-04T02:48:23,929 adding 'openpathsampling/analysis/__init__.py' 2024-10-04T02:48:23,931 adding 'openpathsampling/analysis/channel_analysis.py' 2024-10-04T02:48:23,932 adding 'openpathsampling/analysis/ensemble_representation.py' 2024-10-04T02:48:23,935 adding 'openpathsampling/analysis/path_histogram.py' 2024-10-04T02:48:23,937 adding 'openpathsampling/analysis/reactive_flux_analysis.py' 2024-10-04T02:48:23,939 adding 'openpathsampling/analysis/replica_network.py' 2024-10-04T02:48:23,942 adding 'openpathsampling/analysis/shooting_point_analysis.py' 2024-10-04T02:48:23,943 adding 'openpathsampling/analysis/sshooting_analysis.py' 2024-10-04T02:48:23,945 adding 'openpathsampling/analysis/tools.py' 2024-10-04T02:48:23,947 adding 'openpathsampling/analysis/trajectory_transition_analysis.py' 2024-10-04T02:48:23,949 adding 'openpathsampling/analysis/tis/__init__.py' 2024-10-04T02:48:23,951 adding 'openpathsampling/analysis/tis/core.py' 2024-10-04T02:48:23,952 adding 'openpathsampling/analysis/tis/crossing_probability.py' 2024-10-04T02:48:23,954 adding 'openpathsampling/analysis/tis/flux.py' 2024-10-04T02:48:23,956 adding 'openpathsampling/analysis/tis/misc.py' 2024-10-04T02:48:23,958 adding 'openpathsampling/analysis/tis/standard_analysis.py' 2024-10-04T02:48:23,959 adding 'openpathsampling/beta/__init__.py' 2024-10-04T02:48:23,962 adding 'openpathsampling/beta/hooks.py' 2024-10-04T02:48:23,963 adding 'openpathsampling/collectivevariables/README.md' 2024-10-04T02:48:23,964 adding 'openpathsampling/collectivevariables/__init__.py' 2024-10-04T02:48:23,966 adding 'openpathsampling/collectivevariables/plumed_wrapper.py' 2024-10-04T02:48:23,968 adding 'openpathsampling/engines/__init__.py' 2024-10-04T02:48:23,969 adding 'openpathsampling/engines/delayedinterrupt.py' 2024-10-04T02:48:23,972 adding 'openpathsampling/engines/dynamics_engine.py' 2024-10-04T02:48:23,975 adding 'openpathsampling/engines/external_engine.py' 2024-10-04T02:48:23,977 adding 'openpathsampling/engines/snapshot.py' 2024-10-04T02:48:23,978 adding 'openpathsampling/engines/topology.py' 2024-10-04T02:48:23,980 adding 'openpathsampling/engines/trajectory.py' 2024-10-04T02:48:23,982 adding 'openpathsampling/engines/external_snapshots/README.md' 2024-10-04T02:48:23,983 adding 'openpathsampling/engines/external_snapshots/__init__.py' 2024-10-04T02:48:23,985 adding 'openpathsampling/engines/external_snapshots/snapshot.py' 2024-10-04T02:48:23,986 adding 'openpathsampling/engines/external_snapshots/features/__init__.py' 2024-10-04T02:48:23,987 adding 'openpathsampling/engines/external_snapshots/features/box_vectors.py' 2024-10-04T02:48:23,988 adding 'openpathsampling/engines/external_snapshots/features/coordinates.py' 2024-10-04T02:48:23,990 adding 'openpathsampling/engines/external_snapshots/features/file_info.py' 2024-10-04T02:48:23,991 adding 'openpathsampling/engines/external_snapshots/features/velocities.py' 2024-10-04T02:48:23,993 adding 'openpathsampling/engines/features/__init__.py' 2024-10-04T02:48:23,995 adding 'openpathsampling/engines/features/base.py' 2024-10-04T02:48:23,997 adding 'openpathsampling/engines/features/box_vectors.py' 2024-10-04T02:48:23,998 adding 'openpathsampling/engines/features/coordinates.py' 2024-10-04T02:48:23,999 adding 'openpathsampling/engines/features/engine.py' 2024-10-04T02:48:24,000 adding 'openpathsampling/engines/features/kinetics.py' 2024-10-04T02:48:24,002 adding 'openpathsampling/engines/features/numpydoctools.py' 2024-10-04T02:48:24,004 adding 'openpathsampling/engines/features/shared.py' 2024-10-04T02:48:24,005 adding 'openpathsampling/engines/features/statics.py' 2024-10-04T02:48:24,006 adding 'openpathsampling/engines/features/topology.py' 2024-10-04T02:48:24,008 adding 'openpathsampling/engines/features/velocities.py' 2024-10-04T02:48:24,009 adding 'openpathsampling/engines/gromacs/__init__.py' 2024-10-04T02:48:24,011 adding 'openpathsampling/engines/gromacs/engine.py' 2024-10-04T02:48:24,013 adding 'openpathsampling/engines/openmm/__init__.py' 2024-10-04T02:48:24,015 adding 'openpathsampling/engines/openmm/engine.py' 2024-10-04T02:48:24,017 adding 'openpathsampling/engines/openmm/snapshot.py' 2024-10-04T02:48:24,019 adding 'openpathsampling/engines/openmm/tools.py' 2024-10-04T02:48:24,021 adding 'openpathsampling/engines/openmm/topology.py' 2024-10-04T02:48:24,022 adding 'openpathsampling/engines/openmm/features/__init__.py' 2024-10-04T02:48:24,024 adding 'openpathsampling/engines/openmm/features/instantaneous_temperature.py' 2024-10-04T02:48:24,025 adding 'openpathsampling/engines/openmm/features/masses.py' 2024-10-04T02:48:24,026 adding 'openpathsampling/engines/openmm/features/traj_quantities.py' 2024-10-04T02:48:24,028 adding 'openpathsampling/engines/toy/__init__.py' 2024-10-04T02:48:24,029 adding 'openpathsampling/engines/toy/engine.py' 2024-10-04T02:48:24,030 adding 'openpathsampling/engines/toy/integrators.py' 2024-10-04T02:48:24,032 adding 'openpathsampling/engines/toy/pes.py' 2024-10-04T02:48:24,033 adding 'openpathsampling/engines/toy/snapshot.py' 2024-10-04T02:48:24,034 adding 'openpathsampling/engines/toy/topology.py' 2024-10-04T02:48:24,036 adding 'openpathsampling/engines/toy/features/__init__.py' 2024-10-04T02:48:24,037 adding 'openpathsampling/engines/toy/features/instantaneous_temperature.py' 2024-10-04T02:48:24,038 adding 'openpathsampling/ensembles/README.md' 2024-10-04T02:48:24,039 adding 'openpathsampling/ensembles/__init__.py' 2024-10-04T02:48:24,041 adding 'openpathsampling/ensembles/visit_all_states.py' 2024-10-04T02:48:24,043 adding 'openpathsampling/experimental/README.md' 2024-10-04T02:48:24,044 adding 'openpathsampling/experimental/__init__.py' 2024-10-04T02:48:24,045 adding 'openpathsampling/experimental/path_tree/__init__.py' 2024-10-04T02:48:24,046 adding 'openpathsampling/experimental/path_tree/mpl.py' 2024-10-04T02:48:24,048 adding 'openpathsampling/experimental/path_tree/options.py' 2024-10-04T02:48:24,049 adding 'openpathsampling/experimental/path_tree/path_tree.py' 2024-10-04T02:48:24,051 adding 'openpathsampling/experimental/path_tree/plotter.py' 2024-10-04T02:48:24,052 adding 'openpathsampling/experimental/path_tree/svg.py' 2024-10-04T02:48:24,054 adding 'openpathsampling/experimental/simstore/__init__.py' 2024-10-04T02:48:24,056 adding 'openpathsampling/experimental/simstore/attribute_handlers.py' 2024-10-04T02:48:24,057 adding 'openpathsampling/experimental/simstore/backend.py' 2024-10-04T02:48:24,059 adding 'openpathsampling/experimental/simstore/callable_codec.py' 2024-10-04T02:48:24,062 adding 'openpathsampling/experimental/simstore/class_info.py' 2024-10-04T02:48:24,063 adding 'openpathsampling/experimental/simstore/class_lookup.py' 2024-10-04T02:48:24,065 adding 'openpathsampling/experimental/simstore/custom_json.py' 2024-10-04T02:48:24,066 adding 'openpathsampling/experimental/simstore/dict_serialization_helpers.py' 2024-10-04T02:48:24,068 adding 'openpathsampling/experimental/simstore/memory_backend.py' 2024-10-04T02:48:24,069 adding 'openpathsampling/experimental/simstore/my_types.py' 2024-10-04T02:48:24,070 adding 'openpathsampling/experimental/simstore/proxy.py' 2024-10-04T02:48:24,072 adding 'openpathsampling/experimental/simstore/serialization.py' 2024-10-04T02:48:24,074 adding 'openpathsampling/experimental/simstore/serialization_helpers.py' 2024-10-04T02:48:24,078 adding 'openpathsampling/experimental/simstore/sql_backend.py' 2024-10-04T02:48:24,081 adding 'openpathsampling/experimental/simstore/storable_functions.py' 2024-10-04T02:48:24,085 adding 'openpathsampling/experimental/simstore/storage.py' 2024-10-04T02:48:24,086 adding 'openpathsampling/experimental/simstore/tags_table.py' 2024-10-04T02:48:24,087 adding 'openpathsampling/experimental/simstore/test_attribute_handlers.py' 2024-10-04T02:48:24,089 adding 'openpathsampling/experimental/simstore/test_backend.py' 2024-10-04T02:48:24,090 adding 'openpathsampling/experimental/simstore/test_callable_codec.py' 2024-10-04T02:48:24,092 adding 'openpathsampling/experimental/simstore/test_class_info.py' 2024-10-04T02:48:24,093 adding 'openpathsampling/experimental/simstore/test_custom_json.py' 2024-10-04T02:48:24,094 adding 'openpathsampling/experimental/simstore/test_dict_serialization_helpers.py' 2024-10-04T02:48:24,096 adding 'openpathsampling/experimental/simstore/test_serialization.py' 2024-10-04T02:48:24,098 adding 'openpathsampling/experimental/simstore/test_serialization_helpers.py' 2024-10-04T02:48:24,100 adding 'openpathsampling/experimental/simstore/test_sql_backend.py' 2024-10-04T02:48:24,102 adding 'openpathsampling/experimental/simstore/test_storable_function.py' 2024-10-04T02:48:24,104 adding 'openpathsampling/experimental/simstore/test_storable_function_integration.py' 2024-10-04T02:48:24,105 adding 'openpathsampling/experimental/simstore/test_storage.py' 2024-10-04T02:48:24,106 adding 'openpathsampling/experimental/simstore/test_tags_table.py' 2024-10-04T02:48:24,108 adding 'openpathsampling/experimental/simstore/test_tools.py' 2024-10-04T02:48:24,109 adding 'openpathsampling/experimental/simstore/test_type_ident.py' 2024-10-04T02:48:24,110 adding 'openpathsampling/experimental/simstore/test_utils.py' 2024-10-04T02:48:24,111 adding 'openpathsampling/experimental/simstore/test_uuids.py' 2024-10-04T02:48:24,113 adding 'openpathsampling/experimental/simstore/tools.py' 2024-10-04T02:48:24,114 adding 'openpathsampling/experimental/simstore/type_ident.py' 2024-10-04T02:48:24,115 adding 'openpathsampling/experimental/simstore/uuids.py' 2024-10-04T02:48:24,117 adding 'openpathsampling/experimental/simstore/wrapper.py' 2024-10-04T02:48:24,118 adding 'openpathsampling/experimental/simstore/regressions/README.md' 2024-10-04T02:48:24,120 adding 'openpathsampling/experimental/simstore/regressions/test_numpy_sfrs.py' 2024-10-04T02:48:24,121 adding 'openpathsampling/experimental/storage/__init__.py' 2024-10-04T02:48:24,123 adding 'openpathsampling/experimental/storage/collective_variables.py' 2024-10-04T02:48:24,124 adding 'openpathsampling/experimental/storage/mdtraj_json.py' 2024-10-04T02:48:24,125 adding 'openpathsampling/experimental/storage/monkey_patches.py' 2024-10-04T02:48:24,127 adding 'openpathsampling/experimental/storage/ops_storage.py' 2024-10-04T02:48:24,129 adding 'openpathsampling/experimental/storage/simtk_unit.py' 2024-10-04T02:48:24,130 adding 'openpathsampling/experimental/storage/snapshots.py' 2024-10-04T02:48:24,131 adding 'openpathsampling/experimental/storage/snapshots_table.py' 2024-10-04T02:48:24,133 adding 'openpathsampling/experimental/storage/test_collective_variables.py' 2024-10-04T02:48:24,134 adding 'openpathsampling/experimental/storage/test_mdtraj_json.py' 2024-10-04T02:48:24,135 adding 'openpathsampling/experimental/storage/test_monkey_patches.py' 2024-10-04T02:48:24,136 adding 'openpathsampling/experimental/storage/test_pathsampling.py' 2024-10-04T02:48:24,138 adding 'openpathsampling/experimental/storage/test_regressions.py' 2024-10-04T02:48:24,139 adding 'openpathsampling/experimental/storage/test_simtk_unit.py' 2024-10-04T02:48:24,140 adding 'openpathsampling/experimental/storage/test_snapshot_integrations.py' 2024-10-04T02:48:24,142 adding 'openpathsampling/experimental/storage/test_snapshots.py' 2024-10-04T02:48:24,143 adding 'openpathsampling/experimental/storage/test_snapshots_table.py' 2024-10-04T02:48:24,145 adding 'openpathsampling/high_level/__init__.py' 2024-10-04T02:48:24,147 adding 'openpathsampling/high_level/interface_set.py' 2024-10-04T02:48:24,152 adding 'openpathsampling/high_level/move_scheme.py' 2024-10-04T02:48:24,157 adding 'openpathsampling/high_level/move_strategy.py' 2024-10-04T02:48:24,159 adding 'openpathsampling/high_level/ms_outer_interface.py' 2024-10-04T02:48:24,166 adding 'openpathsampling/high_level/network.py' 2024-10-04T02:48:24,168 adding 'openpathsampling/high_level/part_in_b_tps.py' 2024-10-04T02:48:24,172 adding 'openpathsampling/high_level/transition.py' 2024-10-04T02:48:24,174 adding 'openpathsampling/netcdfplus/__init__.py' 2024-10-04T02:48:24,177 adding 'openpathsampling/netcdfplus/attribute.py' 2024-10-04T02:48:24,180 adding 'openpathsampling/netcdfplus/base.py' 2024-10-04T02:48:24,183 adding 'openpathsampling/netcdfplus/cache.py' 2024-10-04T02:48:24,186 adding 'openpathsampling/netcdfplus/chaindict.py' 2024-10-04T02:48:24,190 adding 'openpathsampling/netcdfplus/dictify.py' 2024-10-04T02:48:24,198 adding 'openpathsampling/netcdfplus/netcdfplus.py' 2024-10-04T02:48:24,200 adding 'openpathsampling/netcdfplus/proxy.py' 2024-10-04T02:48:24,202 adding 'openpathsampling/netcdfplus/util.py' 2024-10-04T02:48:24,203 adding 'openpathsampling/netcdfplus/version.py' 2024-10-04T02:48:24,205 adding 'openpathsampling/netcdfplus/stores/__init__.py' 2024-10-04T02:48:24,207 adding 'openpathsampling/netcdfplus/stores/attribute.py' 2024-10-04T02:48:24,209 adding 'openpathsampling/netcdfplus/stores/dict.py' 2024-10-04T02:48:24,211 adding 'openpathsampling/netcdfplus/stores/indexed.py' 2024-10-04T02:48:24,214 adding 'openpathsampling/netcdfplus/stores/named.py' 2024-10-04T02:48:24,221 adding 'openpathsampling/netcdfplus/stores/object.py' 2024-10-04T02:48:24,223 adding 'openpathsampling/netcdfplus/stores/value.py' 2024-10-04T02:48:24,225 adding 'openpathsampling/netcdfplus/stores/variable.py' 2024-10-04T02:48:24,227 adding 'openpathsampling/numerics/__init__.py' 2024-10-04T02:48:24,232 adding 'openpathsampling/numerics/histogram.py' 2024-10-04T02:48:24,234 adding 'openpathsampling/numerics/lookup_function.py' 2024-10-04T02:48:24,236 adding 'openpathsampling/numerics/resampling_statistics.py' 2024-10-04T02:48:24,240 adding 'openpathsampling/numerics/wham.py' 2024-10-04T02:48:24,242 adding 'openpathsampling/pathmovers/README.md' 2024-10-04T02:48:24,244 adding 'openpathsampling/pathmovers/__init__.py' 2024-10-04T02:48:24,245 adding 'openpathsampling/pathmovers/move_schemes.py' 2024-10-04T02:48:24,246 adding 'openpathsampling/pathmovers/move_strategies.py' 2024-10-04T02:48:24,250 adding 'openpathsampling/pathmovers/spring_shooting.py' 2024-10-04T02:48:24,252 adding 'openpathsampling/pathsimulators/__init__.py' 2024-10-04T02:48:24,255 adding 'openpathsampling/pathsimulators/bootstrap_init_conds.py' 2024-10-04T02:48:24,257 adding 'openpathsampling/pathsimulators/direct_md.py' 2024-10-04T02:48:24,260 adding 'openpathsampling/pathsimulators/path_sampling.py' 2024-10-04T02:48:24,261 adding 'openpathsampling/pathsimulators/path_simulator.py' 2024-10-04T02:48:24,263 adding 'openpathsampling/pathsimulators/reactive_flux.py' 2024-10-04T02:48:24,264 adding 'openpathsampling/pathsimulators/shoot_snapshots.py' 2024-10-04T02:48:24,266 adding 'openpathsampling/pathsimulators/sshooting_simulator.py' 2024-10-04T02:48:24,268 adding 'openpathsampling/resources/debug_logging.conf' 2024-10-04T02:48:24,269 adding 'openpathsampling/resources/engine_debug.conf' 2024-10-04T02:48:24,270 adding 'openpathsampling/resources/logging.conf' 2024-10-04T02:48:24,271 adding 'openpathsampling/resources/vis.css' 2024-10-04T02:48:24,273 adding 'openpathsampling/storage/__init__.py' 2024-10-04T02:48:24,274 adding 'openpathsampling/storage/distributed.py' 2024-10-04T02:48:24,277 adding 'openpathsampling/storage/storage.py' 2024-10-04T02:48:24,278 adding 'openpathsampling/storage/util.py' 2024-10-04T02:48:24,280 adding 'openpathsampling/storage/stores/__init__.py' 2024-10-04T02:48:24,281 adding 'openpathsampling/storage/stores/collectivevariable.py' 2024-10-04T02:48:24,282 adding 'openpathsampling/storage/stores/mcstep.py' 2024-10-04T02:48:24,284 adding 'openpathsampling/storage/stores/movechange.py' 2024-10-04T02:48:24,285 adding 'openpathsampling/storage/stores/pathsimulator.py' 2024-10-04T02:48:24,286 adding 'openpathsampling/storage/stores/sample.py' 2024-10-04T02:48:24,288 adding 'openpathsampling/storage/stores/snapshot_base.py' 2024-10-04T02:48:24,289 adding 'openpathsampling/storage/stores/snapshot_feature.py' 2024-10-04T02:48:24,291 adding 'openpathsampling/storage/stores/snapshot_value.py' 2024-10-04T02:48:24,294 adding 'openpathsampling/storage/stores/snapshot_wrapper.py' 2024-10-04T02:48:24,295 adding 'openpathsampling/storage/stores/trajectory.py' 2024-10-04T02:48:24,297 adding 'openpathsampling/strategies/__init__.py' 2024-10-04T02:48:24,299 adding 'openpathsampling/tests/.gitignore' 2024-10-04T02:48:24,301 adding 'openpathsampling/tests/__init__.py' 2024-10-04T02:48:24,302 adding 'openpathsampling/tests/test_api.py' 2024-10-04T02:48:24,304 adding 'openpathsampling/tests/test_attribute.py' 2024-10-04T02:48:24,306 adding 'openpathsampling/tests/test_bias_function.py' 2024-10-04T02:48:24,308 adding 'openpathsampling/tests/test_channel_analysis.py' 2024-10-04T02:48:24,310 adding 'openpathsampling/tests/test_collectivevariable.py' 2024-10-04T02:48:24,311 adding 'openpathsampling/tests/test_deprecations.py' 2024-10-04T02:48:24,313 adding 'openpathsampling/tests/test_dynamicsengine.py' 2024-10-04T02:48:24,320 adding 'openpathsampling/tests/test_ensemble.py' 2024-10-04T02:48:24,323 adding 'openpathsampling/tests/test_external_engine.py' 2024-10-04T02:48:24,324 adding 'openpathsampling/tests/test_external_snapshots.py' 2024-10-04T02:48:24,325 adding 'openpathsampling/tests/test_features.py' 2024-10-04T02:48:24,328 adding 'openpathsampling/tests/test_gromacs_engine.py' 2024-10-04T02:48:24,329 adding 'openpathsampling/tests/test_helpers.py' 2024-10-04T02:48:24,331 adding 'openpathsampling/tests/test_histogram.py' 2024-10-04T02:48:24,332 adding 'openpathsampling/tests/test_integration_tools.py' 2024-10-04T02:48:24,334 adding 'openpathsampling/tests/test_interface_set.py' 2024-10-04T02:48:24,335 adding 'openpathsampling/tests/test_lookup_function.py' 2024-10-04T02:48:24,337 adding 'openpathsampling/tests/test_mdtraj_support.py' 2024-10-04T02:48:24,341 adding 'openpathsampling/tests/test_movescheme.py' 2024-10-04T02:48:24,346 adding 'openpathsampling/tests/test_movestrategy.py' 2024-10-04T02:48:24,348 adding 'openpathsampling/tests/test_ms_outer_interface.py' 2024-10-04T02:48:24,349 adding 'openpathsampling/tests/test_netcdfplus_base.py' 2024-10-04T02:48:24,352 adding 'openpathsampling/tests/test_network.py' 2024-10-04T02:48:24,354 adding 'openpathsampling/tests/test_openmm_engine.py' 2024-10-04T02:48:24,355 adding 'openpathsampling/tests/test_openmm_snapshot.py' 2024-10-04T02:48:24,356 adding 'openpathsampling/tests/test_openmm_tools.py' 2024-10-04T02:48:24,358 adding 'openpathsampling/tests/test_part_in_b_tps.py' 2024-10-04T02:48:24,359 adding 'openpathsampling/tests/test_path_histogram.py' 2024-10-04T02:48:24,365 adding 'openpathsampling/tests/test_pathmover.py' 2024-10-04T02:48:24,369 adding 'openpathsampling/tests/test_pathsimulator.py' 2024-10-04T02:48:24,371 adding 'openpathsampling/tests/test_plumed_wrapper.py' 2024-10-04T02:48:24,372 adding 'openpathsampling/tests/test_progress.py' 2024-10-04T02:48:24,373 adding 'openpathsampling/tests/test_pyemma_cv.py' 2024-10-04T02:48:24,374 adding 'openpathsampling/tests/test_range_logic.py' 2024-10-04T02:48:24,376 adding 'openpathsampling/tests/test_reactive_flux_analysis.py' 2024-10-04T02:48:24,378 adding 'openpathsampling/tests/test_resampling_statistics.py' 2024-10-04T02:48:24,379 adding 'openpathsampling/tests/test_rng.py' 2024-10-04T02:48:24,380 adding 'openpathsampling/tests/test_sample.py' 2024-10-04T02:48:24,382 adding 'openpathsampling/tests/test_shared.py' 2024-10-04T02:48:24,383 adding 'openpathsampling/tests/test_shooting.py' 2024-10-04T02:48:24,385 adding 'openpathsampling/tests/test_shooting_point_analysis.py' 2024-10-04T02:48:24,387 adding 'openpathsampling/tests/test_snapshot.py' 2024-10-04T02:48:24,390 adding 'openpathsampling/tests/test_snapshot_modifier.py' 2024-10-04T02:48:24,392 adding 'openpathsampling/tests/test_spring_shooting.py' 2024-10-04T02:48:24,394 adding 'openpathsampling/tests/test_sshooting_analysis.py' 2024-10-04T02:48:24,395 adding 'openpathsampling/tests/test_sshooting_simulator.py' 2024-10-04T02:48:24,397 adding 'openpathsampling/tests/test_storage.py' 2024-10-04T02:48:24,402 adding 'openpathsampling/tests/test_tis_analysis.py' 2024-10-04T02:48:24,403 adding 'openpathsampling/tests/test_tools.py' 2024-10-04T02:48:24,405 adding 'openpathsampling/tests/test_toy_dynamics.py' 2024-10-04T02:48:24,407 adding 'openpathsampling/tests/test_toy_features.py' 2024-10-04T02:48:24,408 adding 'openpathsampling/tests/test_trajectory.py' 2024-10-04T02:48:24,410 adding 'openpathsampling/tests/test_trajectory_transition_analysis.py' 2024-10-04T02:48:24,412 adding 'openpathsampling/tests/test_transitions.py' 2024-10-04T02:48:24,413 adding 'openpathsampling/tests/test_visit_all_states.py' 2024-10-04T02:48:24,415 adding 'openpathsampling/tests/test_volume.py' 2024-10-04T02:48:24,417 adding 'openpathsampling/tests/test_wham.py' 2024-10-04T02:48:24,418 adding 'openpathsampling/tests/analysis/__init__.py' 2024-10-04T02:48:24,419 adding 'openpathsampling/tests/analysis/conftest.py' 2024-10-04T02:48:24,421 adding 'openpathsampling/tests/analysis/utils/__init__.py' 2024-10-04T02:48:24,423 adding 'openpathsampling/tests/analysis/utils/fixture_classes.py' 2024-10-04T02:48:24,425 adding 'openpathsampling/tests/analysis/utils/mock_movers.py' 2024-10-04T02:48:24,426 adding 'openpathsampling/tests/analysis/utils/test_fixture_classes.py' 2024-10-04T02:48:24,428 adding 'openpathsampling/tests/analysis/utils/test_mock_movers.py' 2024-10-04T02:48:24,430 adding 'openpathsampling/tests/external_engine/Makefile' 2024-10-04T02:48:24,431 adding 'openpathsampling/tests/external_engine/engine.c' 2024-10-04T02:48:24,432 adding 'openpathsampling/tests/external_engine/microtest.py' 2024-10-04T02:48:24,434 adding 'openpathsampling/tests/pathsimulators/__init__.py' 2024-10-04T02:48:24,436 adding 'openpathsampling/tests/pathsimulators/test_hooks.py' 2024-10-04T02:48:24,625 adding 'openpathsampling/tests/test_data/ala_small_traj.pdb' 2024-10-04T02:48:24,635 adding 'openpathsampling/tests/test_data/tip4p_water.pdb' 2024-10-04T02:48:24,637 adding 'openpathsampling/tests/test_data/apis/ops1x0_api.txt' 2024-10-04T02:48:24,654 adding 'openpathsampling/tests/test_data/gromacs_engine/conf.gro' 2024-10-04T02:48:24,655 adding 'openpathsampling/tests/test_data/gromacs_engine/md.mdp' 2024-10-04T02:48:24,657 adding 'openpathsampling/tests/test_data/gromacs_engine/topol.top' 2024-10-04T02:48:24,679 adding 'openpathsampling/tests/test_data/gromacs_engine/traj.trr' 2024-10-04T02:48:24,703 adding 'openpathsampling/tests/test_data/gromacs_engine/project_trr/0000000.trr' 2024-10-04T02:48:25,010 adding 'openpathsampling/tests/test_data/gromacs_engine/project_trr/0000099.trr' 2024-10-04T02:48:25,042 adding 'openpathsampling/tests/test_data/plumed_wrapper/AD_initial_frame.pdb' 2024-10-04T02:48:25,044 adding 'openpathsampling/tests/test_data/plumed_wrapper/AD_plumed_rmsd.pdb' 2024-10-04T02:48:25,054 adding 'openpathsampling/tests/test_data/reduce_box_vects/dna.gro' 2024-10-04T02:48:25,059 adding 'openpathsampling/tests/test_data/reduce_box_vects/dna.trr' 2024-10-04T02:48:25,061 adding 'openpathsampling-1.7.0.dist-info/LICENSE' 2024-10-04T02:48:25,062 adding 'openpathsampling-1.7.0.dist-info/METADATA' 2024-10-04T02:48:25,063 adding 'openpathsampling-1.7.0.dist-info/WHEEL' 2024-10-04T02:48:25,064 adding 'openpathsampling-1.7.0.dist-info/top_level.txt' 2024-10-04T02:48:25,070 adding 'openpathsampling-1.7.0.dist-info/RECORD' 2024-10-04T02:48:25,106 removing build/bdist.linux-armv7l/wheel 2024-10-04T02:48:25,306 Building wheel for openpathsampling (setup.py): finished with status 'done' 2024-10-04T02:48:25,341 Created wheel for openpathsampling: filename=openpathsampling-1.7.0-py3-none-any.whl size=3215632 sha256=09b7c1959cc83afbd319c4773121285e968de981ba0dab0d988b6c1332c5156d 2024-10-04T02:48:25,342 Stored in directory: /tmp/pip-ephem-wheel-cache-zzy0qt6w/wheels/11/c1/73/065e0ff7290cd35ded260fabcdd9c47935ed2528f670666345 2024-10-04T02:48:25,362 Successfully built openpathsampling 2024-10-04T02:48:25,438 Removed build tracker: '/tmp/pip-build-tracker-2yk238se'