2024-10-04T10:08:39,500 Created temporary directory: /tmp/pip-build-tracker-ilq0b8p0 2024-10-04T10:08:39,506 Initialized build tracking at /tmp/pip-build-tracker-ilq0b8p0 2024-10-04T10:08:39,507 Created build tracker: /tmp/pip-build-tracker-ilq0b8p0 2024-10-04T10:08:39,508 Entered build tracker: /tmp/pip-build-tracker-ilq0b8p0 2024-10-04T10:08:39,510 Created temporary directory: /tmp/pip-wheel-0h2oemnf 2024-10-04T10:08:39,515 Created temporary directory: /tmp/pip-ephem-wheel-cache-hdpv6eaf 2024-10-04T10:08:39,576 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-10-04T10:08:39,580 2 location(s) to search for versions of scipion-em-emready: 2024-10-04T10:08:39,580 * https://pypi.org/simple/scipion-em-emready/ 2024-10-04T10:08:39,580 * https://www.piwheels.org/simple/scipion-em-emready/ 2024-10-04T10:08:39,582 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-emready/ 2024-10-04T10:08:39,584 Getting page https://pypi.org/simple/scipion-em-emready/ 2024-10-04T10:08:39,587 Found index url https://pypi.org/simple/ 2024-10-04T10:08:39,921 Fetched page https://pypi.org/simple/scipion-em-emready/ as application/vnd.pypi.simple.v1+json 2024-10-04T10:08:40,005 Found link https://files.pythonhosted.org/packages/d2/83/2eacc5ffdf9fc5fbe1e83e94e75081f9231691dcbf24cf3a6c7c34c6b08d/scipion-em-emready-3.0.tar.gz (from https://pypi.org/simple/scipion-em-emready/), version: 3.0 2024-10-04T10:08:40,007 Skipping link: No binaries permitted for scipion-em-emready: https://files.pythonhosted.org/packages/03/32/01b8486c59c7791bc7b48fdb3f63329b6dd52aef516746ddf6fbbc9e61e6/scipion_em_emready-3.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emready/) 2024-10-04T10:08:40,009 Found link https://files.pythonhosted.org/packages/4c/e0/a5db497a711fc5b701f7573260746d4ba5181116d2ce478bb2871e2ff190/scipion-em-emready-3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-emready/), version: 3.0.1 2024-10-04T10:08:40,011 Skipping link: No binaries permitted for scipion-em-emready: https://files.pythonhosted.org/packages/c7/5a/087bee033713ed875b73ce7deb998de93049845cddccce3ea1b9e2acd7b8/scipion_em_emready-3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emready/) 2024-10-04T10:08:40,013 Found link https://files.pythonhosted.org/packages/5c/a7/c40a9b806fde439652319b8eb3f29b42c753eb8d6b2ed64e0b16d970527b/scipion-em-emready-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-emready/), version: 3.1.0 2024-10-04T10:08:40,015 Skipping link: No binaries permitted for scipion-em-emready: https://files.pythonhosted.org/packages/37/3a/288b9ebdf79a88dfab418b25b8ce5f8a7672925405c726b5d94e94acf462/scipion_em_emready-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emready/) 2024-10-04T10:08:40,017 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-emready/ 2024-10-04T10:08:40,019 Getting page https://www.piwheels.org/simple/scipion-em-emready/ 2024-10-04T10:08:40,021 Found index url https://www.piwheels.org/simple/ 2024-10-04T10:08:40,194 Fetched page https://www.piwheels.org/simple/scipion-em-emready/ as text/html 2024-10-04T10:08:40,195 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-emready/ 2024-10-04T10:08:40,196 Skipping link: not a file: https://pypi.org/simple/scipion-em-emready/ 2024-10-04T10:08:40,215 Given no hashes to check 1 links for project 'scipion-em-emready': discarding no candidates 2024-10-04T10:08:40,217 Collecting scipion-em-emready==3.1.0 2024-10-04T10:08:40,219 Created temporary directory: /tmp/pip-unpack-gn_d1krl 2024-10-04T10:08:40,445 Downloading scipion-em-emready-3.1.0.tar.gz (21 kB) 2024-10-04T10:08:40,497 Added scipion-em-emready==3.1.0 from https://files.pythonhosted.org/packages/5c/a7/c40a9b806fde439652319b8eb3f29b42c753eb8d6b2ed64e0b16d970527b/scipion-em-emready-3.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-ilq0b8p0' 2024-10-04T10:08:40,500 Running setup.py (path:/tmp/pip-wheel-0h2oemnf/scipion-em-emready_9dcd8e44ab1344d1b07b346ea2678831/setup.py) egg_info for package scipion-em-emready 2024-10-04T10:08:40,501 Created temporary directory: /tmp/pip-pip-egg-info-3b4zi6ll 2024-10-04T10:08:40,502 Preparing metadata (setup.py): started 2024-10-04T10:08:40,504 Running command python setup.py egg_info 2024-10-04T10:08:41,039 Traceback (most recent call last): 2024-10-04T10:08:41,040 File "", line 2, in 2024-10-04T10:08:41,040 File "", line 34, in 2024-10-04T10:08:41,041 File "/tmp/pip-wheel-0h2oemnf/scipion-em-emready_9dcd8e44ab1344d1b07b346ea2678831/setup.py", line 43, in 2024-10-04T10:08:41,042 from emready import __version__ 2024-10-04T10:08:41,043 File "/tmp/pip-wheel-0h2oemnf/scipion-em-emready_9dcd8e44ab1344d1b07b346ea2678831/emready/__init__.py", line 28, in 2024-10-04T10:08:41,044 import pwem 2024-10-04T10:08:41,044 ModuleNotFoundError: No module named 'pwem' 2024-10-04T10:08:41,107 ERROR: python setup.py egg_info exited with 1 2024-10-04T10:08:41,120 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2024-10-04T10:08:41,120 exec(compile('"'"''"'"''"'"' 2024-10-04T10:08:41,120 # This is -- a caller that pip uses to run setup.py 2024-10-04T10:08:41,120 # 2024-10-04T10:08:41,120 # - It imports setuptools before invoking setup.py, to enable projects that directly 2024-10-04T10:08:41,120 # import from `distutils.core` to work with newer packaging standards. 2024-10-04T10:08:41,120 # - It provides a clear error message when setuptools is not installed. 2024-10-04T10:08:41,120 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2024-10-04T10:08:41,120 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2024-10-04T10:08:41,120 # manifest_maker: standard file '"'"'-c'"'"' not found". 2024-10-04T10:08:41,120 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2024-10-04T10:08:41,120 import os, sys, tokenize 2024-10-04T10:08:41,120 2024-10-04T10:08:41,120 try: 2024-10-04T10:08:41,120 import setuptools 2024-10-04T10:08:41,120 except ImportError as error: 2024-10-04T10:08:41,120 print( 2024-10-04T10:08:41,120 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2024-10-04T10:08:41,120 "the build environment.", 2024-10-04T10:08:41,120 file=sys.stderr, 2024-10-04T10:08:41,120 ) 2024-10-04T10:08:41,120 sys.exit(1) 2024-10-04T10:08:41,120 2024-10-04T10:08:41,120 __file__ = %r 2024-10-04T10:08:41,120 sys.argv[0] = __file__ 2024-10-04T10:08:41,120 2024-10-04T10:08:41,120 if os.path.exists(__file__): 2024-10-04T10:08:41,120 filename = __file__ 2024-10-04T10:08:41,120 with tokenize.open(__file__) as f: 2024-10-04T10:08:41,120 setup_py_code = f.read() 2024-10-04T10:08:41,120 else: 2024-10-04T10:08:41,120 filename = "" 2024-10-04T10:08:41,120 setup_py_code = "from setuptools import setup; setup()" 2024-10-04T10:08:41,120 2024-10-04T10:08:41,120 exec(compile(setup_py_code, filename, "exec")) 2024-10-04T10:08:41,120 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-0h2oemnf/scipion-em-emready_9dcd8e44ab1344d1b07b346ea2678831/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-3b4zi6ll[/] 2024-10-04T10:08:41,121 [bold magenta]cwd[/]: /tmp/pip-wheel-0h2oemnf/scipion-em-emready_9dcd8e44ab1344d1b07b346ea2678831/ 2024-10-04T10:08:41,122 Preparing metadata (setup.py): finished with status 'error' 2024-10-04T10:08:41,123 ERROR: metadata generation failed 2024-10-04T10:08:41,128 Exception information: 2024-10-04T10:08:41,128 Traceback (most recent call last): 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2024-10-04T10:08:41,128 call_subprocess( 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2024-10-04T10:08:41,128 raise error 2024-10-04T10:08:41,128 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2024-10-04T10:08:41,128 2024-10-04T10:08:41,128 The above exception was the direct cause of the following exception: 2024-10-04T10:08:41,128 2024-10-04T10:08:41,128 Traceback (most recent call last): 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2024-10-04T10:08:41,128 status = _inner_run() 2024-10-04T10:08:41,128 ^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2024-10-04T10:08:41,128 return self.run(options, args) 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 67, in wrapper 2024-10-04T10:08:41,128 return func(self, options, args) 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2024-10-04T10:08:41,128 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 95, in resolve 2024-10-04T10:08:41,128 result = self._result = resolver.resolve( 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2024-10-04T10:08:41,128 state = resolution.resolve(requirements, max_rounds=max_rounds) 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2024-10-04T10:08:41,128 self._add_to_criteria(self.state.criteria, r, parent=None) 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2024-10-04T10:08:41,128 if not criterion.candidates: 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2024-10-04T10:08:41,128 return bool(self._sequence) 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 174, in __bool__ 2024-10-04T10:08:41,128 return any(self) 2024-10-04T10:08:41,128 ^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 162, in 2024-10-04T10:08:41,128 return (c for c in iterator if id(c) not in self._incompatible_ids) 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 53, in _iter_built 2024-10-04T10:08:41,128 candidate = func() 2024-10-04T10:08:41,128 ^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 186, in _make_candidate_from_link 2024-10-04T10:08:41,128 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 232, in _make_base_candidate_from_link 2024-10-04T10:08:41,128 self._link_candidate_cache[link] = LinkCandidate( 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 303, in __init__ 2024-10-04T10:08:41,128 super().__init__( 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 158, in __init__ 2024-10-04T10:08:41,128 self.dist = self._prepare() 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 235, in _prepare 2024-10-04T10:08:41,128 dist = self._prepare_distribution() 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 314, in _prepare_distribution 2024-10-04T10:08:41,128 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 527, in prepare_linked_requirement 2024-10-04T10:08:41,128 return self._prepare_linked_requirement(req, parallel_builds) 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 642, in _prepare_linked_requirement 2024-10-04T10:08:41,128 dist = _get_prepared_distribution( 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 72, in _get_prepared_distribution 2024-10-04T10:08:41,128 abstract_dist.prepare_distribution_metadata( 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2024-10-04T10:08:41,128 self.req.prepare_metadata() 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2024-10-04T10:08:41,128 self.metadata_directory = generate_metadata_legacy( 2024-10-04T10:08:41,128 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-04T10:08:41,128 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2024-10-04T10:08:41,128 raise MetadataGenerationFailed(package_details=details) from error 2024-10-04T10:08:41,128 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2024-10-04T10:08:41,142 Removed scipion-em-emready==3.1.0 from https://files.pythonhosted.org/packages/5c/a7/c40a9b806fde439652319b8eb3f29b42c753eb8d6b2ed64e0b16d970527b/scipion-em-emready-3.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-ilq0b8p0' 2024-10-04T10:08:41,143 Removed build tracker: '/tmp/pip-build-tracker-ilq0b8p0'