2024-10-04T19:45:30,870 Created temporary directory: /tmp/pip-build-tracker-mbhjigz5
2024-10-04T19:45:30,871 Initialized build tracking at /tmp/pip-build-tracker-mbhjigz5
2024-10-04T19:45:30,871 Created build tracker: /tmp/pip-build-tracker-mbhjigz5
2024-10-04T19:45:30,872 Entered build tracker: /tmp/pip-build-tracker-mbhjigz5
2024-10-04T19:45:30,873 Created temporary directory: /tmp/pip-wheel-mrywihqo
2024-10-04T19:45:30,877 Created temporary directory: /tmp/pip-ephem-wheel-cache-ksh4uu85
2024-10-04T19:45:30,921 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-10-04T19:45:30,924 2 location(s) to search for versions of celltypist-so:
2024-10-04T19:45:30,924 * https://pypi.org/simple/celltypist-so/
2024-10-04T19:45:30,924 * https://www.piwheels.org/simple/celltypist-so/
2024-10-04T19:45:30,925 Fetching project page and analyzing links: https://pypi.org/simple/celltypist-so/
2024-10-04T19:45:30,926 Getting page https://pypi.org/simple/celltypist-so/
2024-10-04T19:45:30,927 Found index url https://pypi.org/simple/
2024-10-04T19:45:31,150 Fetched page https://pypi.org/simple/celltypist-so/ as application/vnd.pypi.simple.v1+json
2024-10-04T19:45:31,152   Skipping link: No binaries permitted for celltypist-so: https://files.pythonhosted.org/packages/1d/39/80065946193ebcf447417fdffc1f5f929a9e866602bc6bc2c0e197334006/celltypist_SO-1.6.3-py3-none-any.whl (from https://pypi.org/simple/celltypist-so/) (requires-python:>=3.6)
2024-10-04T19:45:31,153   Found link https://files.pythonhosted.org/packages/fa/ba/1a27e0fa5bca18c67399e3053cd650e4f32417618a6a25295f476de5ad7c/celltypist_so-1.6.3.tar.gz (from https://pypi.org/simple/celltypist-so/) (requires-python:>=3.6), version: 1.6.3
2024-10-04T19:45:31,154 Fetching project page and analyzing links: https://www.piwheels.org/simple/celltypist-so/
2024-10-04T19:45:31,154 Getting page https://www.piwheels.org/simple/celltypist-so/
2024-10-04T19:45:31,156 Found index url https://www.piwheels.org/simple/
2024-10-04T19:45:31,322 Fetched page https://www.piwheels.org/simple/celltypist-so/ as text/html
2024-10-04T19:45:31,323 Skipping link: not a file: https://www.piwheels.org/simple/celltypist-so/
2024-10-04T19:45:31,324 Skipping link: not a file: https://pypi.org/simple/celltypist-so/
2024-10-04T19:45:31,343 Given no hashes to check 1 links for project 'celltypist-so': discarding no candidates
2024-10-04T19:45:31,345 Collecting celltypist-so==1.6.3
2024-10-04T19:45:31,347   Created temporary directory: /tmp/pip-unpack-xfdr0ht8
2024-10-04T19:45:31,748   Downloading celltypist_so-1.6.3.tar.gz (6.7 MB)
2024-10-04T19:45:34,745   Added celltypist-so==1.6.3 from https://files.pythonhosted.org/packages/fa/ba/1a27e0fa5bca18c67399e3053cd650e4f32417618a6a25295f476de5ad7c/celltypist_so-1.6.3.tar.gz to build tracker '/tmp/pip-build-tracker-mbhjigz5'
2024-10-04T19:45:34,747   Running setup.py (path:/tmp/pip-wheel-mrywihqo/celltypist-so_efea29a4230a42199737e69636000b39/setup.py) egg_info for package celltypist-so
2024-10-04T19:45:34,749   Created temporary directory: /tmp/pip-pip-egg-info-u7opqazs
2024-10-04T19:45:34,749   Preparing metadata (setup.py): started
2024-10-04T19:45:34,751   Running command python setup.py egg_info
2024-10-04T19:45:35,841   running egg_info
2024-10-04T19:45:35,842   creating /tmp/pip-pip-egg-info-u7opqazs/celltypist_SO.egg-info
2024-10-04T19:45:35,869   writing /tmp/pip-pip-egg-info-u7opqazs/celltypist_SO.egg-info/PKG-INFO
2024-10-04T19:45:35,873   writing dependency_links to /tmp/pip-pip-egg-info-u7opqazs/celltypist_SO.egg-info/dependency_links.txt
2024-10-04T19:45:35,875   writing entry points to /tmp/pip-pip-egg-info-u7opqazs/celltypist_SO.egg-info/entry_points.txt
2024-10-04T19:45:35,876   writing requirements to /tmp/pip-pip-egg-info-u7opqazs/celltypist_SO.egg-info/requires.txt
2024-10-04T19:45:35,877   writing top-level names to /tmp/pip-pip-egg-info-u7opqazs/celltypist_SO.egg-info/top_level.txt
2024-10-04T19:45:35,879   writing manifest file '/tmp/pip-pip-egg-info-u7opqazs/celltypist_SO.egg-info/SOURCES.txt'
2024-10-04T19:45:35,969   reading manifest file '/tmp/pip-pip-egg-info-u7opqazs/celltypist_SO.egg-info/SOURCES.txt'
2024-10-04T19:45:35,970   reading manifest template 'MANIFEST.in'
2024-10-04T19:45:35,977   warning: no previously-included files matching '__pycache__' found under directory '*'
2024-10-04T19:45:35,978   warning: no previously-included files matching '*.pyc' found under directory '*'
2024-10-04T19:45:35,978   adding license file 'LICENSE'
2024-10-04T19:45:35,981   writing manifest file '/tmp/pip-pip-egg-info-u7opqazs/celltypist_SO.egg-info/SOURCES.txt'
2024-10-04T19:45:36,092   Preparing metadata (setup.py): finished with status 'done'
2024-10-04T19:45:36,097   Source in /tmp/pip-wheel-mrywihqo/celltypist-so_efea29a4230a42199737e69636000b39 has version 1.6.3, which satisfies requirement celltypist-so==1.6.3 from https://files.pythonhosted.org/packages/fa/ba/1a27e0fa5bca18c67399e3053cd650e4f32417618a6a25295f476de5ad7c/celltypist_so-1.6.3.tar.gz
2024-10-04T19:45:36,098   Removed celltypist-so==1.6.3 from https://files.pythonhosted.org/packages/fa/ba/1a27e0fa5bca18c67399e3053cd650e4f32417618a6a25295f476de5ad7c/celltypist_so-1.6.3.tar.gz from build tracker '/tmp/pip-build-tracker-mbhjigz5'
2024-10-04T19:45:36,109 Created temporary directory: /tmp/pip-unpack-higt7hhk
2024-10-04T19:45:36,110 Created temporary directory: /tmp/pip-unpack-alyc194j
2024-10-04T19:45:36,110 Building wheels for collected packages: celltypist-so
2024-10-04T19:45:36,114   Created temporary directory: /tmp/pip-wheel-zi62o9pe
2024-10-04T19:45:36,115   Building wheel for celltypist-so (setup.py): started
2024-10-04T19:45:36,116   Destination directory: /tmp/pip-wheel-zi62o9pe
2024-10-04T19:45:36,116   Running command python setup.py bdist_wheel
2024-10-04T19:45:37,141   running bdist_wheel
2024-10-04T19:45:37,272   running build
2024-10-04T19:45:37,273   running build_py
2024-10-04T19:45:37,305   creating build/lib/celltypist
2024-10-04T19:45:37,307   copying celltypist/train.py -> build/lib/celltypist
2024-10-04T19:45:37,310   copying celltypist/classifier.py -> build/lib/celltypist
2024-10-04T19:45:37,313   copying celltypist/models.py -> build/lib/celltypist
2024-10-04T19:45:37,316   copying celltypist/__init__.py -> build/lib/celltypist
2024-10-04T19:45:37,318   copying celltypist/samples.py -> build/lib/celltypist
2024-10-04T19:45:37,320   copying celltypist/plot.py -> build/lib/celltypist
2024-10-04T19:45:37,322   copying celltypist/command_line.py -> build/lib/celltypist
2024-10-04T19:45:37,325   copying celltypist/annotate.py -> build/lib/celltypist
2024-10-04T19:45:37,327   copying celltypist/logger.py -> build/lib/celltypist
2024-10-04T19:45:37,329   running egg_info
2024-10-04T19:45:37,356   writing celltypist_SO.egg-info/PKG-INFO
2024-10-04T19:45:37,360   writing dependency_links to celltypist_SO.egg-info/dependency_links.txt
2024-10-04T19:45:37,362   writing entry points to celltypist_SO.egg-info/entry_points.txt
2024-10-04T19:45:37,363   writing requirements to celltypist_SO.egg-info/requires.txt
2024-10-04T19:45:37,364   writing top-level names to celltypist_SO.egg-info/top_level.txt
2024-10-04T19:45:37,394   reading manifest file 'celltypist_SO.egg-info/SOURCES.txt'
2024-10-04T19:45:37,401   reading manifest template 'MANIFEST.in'
2024-10-04T19:45:37,407   warning: no previously-included files matching '__pycache__' found under directory '*'
2024-10-04T19:45:37,408   warning: no previously-included files matching '*.pyc' found under directory '*'
2024-10-04T19:45:37,409   adding license file 'LICENSE'
2024-10-04T19:45:37,412   writing manifest file 'celltypist_SO.egg-info/SOURCES.txt'
2024-10-04T19:45:37,414   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'celltypist.data.samples' is absent from the `packages` configuration.
2024-10-04T19:45:37,415   !!

2024-10-04T19:45:37,416           ********************************************************************************
2024-10-04T19:45:37,417           ############################
2024-10-04T19:45:37,417           # Package would be ignored #
2024-10-04T19:45:37,418           ############################
2024-10-04T19:45:37,419           Python recognizes 'celltypist.data.samples' as an importable package[^1],
2024-10-04T19:45:37,420           but it is absent from setuptools' `packages` configuration.

2024-10-04T19:45:37,421           This leads to an ambiguous overall configuration. If you want to distribute this
2024-10-04T19:45:37,421           package, please make sure that 'celltypist.data.samples' is explicitly added
2024-10-04T19:45:37,422           to the `packages` configuration field.

2024-10-04T19:45:37,422           Alternatively, you can also rely on setuptools' discovery methods
2024-10-04T19:45:37,423           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-10-04T19:45:37,423           instead of `find_packages(...)`/`find:`).

2024-10-04T19:45:37,424           You can read more about "package discovery" on setuptools documentation page:

2024-10-04T19:45:37,429           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-10-04T19:45:37,432           If you don't want 'celltypist.data.samples' to be distributed and are
2024-10-04T19:45:37,433           already explicitly excluding 'celltypist.data.samples' via
2024-10-04T19:45:37,433           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-10-04T19:45:37,434           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-10-04T19:45:37,434           combination with a more fine grained `package-data` configuration.

2024-10-04T19:45:37,439           You can read more about "package data files" on setuptools documentation page:

2024-10-04T19:45:37,442           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-10-04T19:45:37,444           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-10-04T19:45:37,444                 even if it does not contain any `.py` files.
2024-10-04T19:45:37,445                 On the other hand, currently there is no concept of package data
2024-10-04T19:45:37,445                 directory, all directories are treated like packages.
2024-10-04T19:45:37,447           ********************************************************************************

2024-10-04T19:45:37,450   !!
2024-10-04T19:45:37,451     check.warn(importable)
2024-10-04T19:45:37,451   creating build/lib/celltypist/data/samples
2024-10-04T19:45:37,452   copying celltypist/data/samples/Ensembl105_Human2Mouse_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T19:45:37,453   copying celltypist/data/samples/Ensembl110_Cynomolgus2Mouse_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T19:45:37,455   copying celltypist/data/samples/Ensembl110_Cynomolgus2Pig_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T19:45:37,457   copying celltypist/data/samples/Ensembl110_Cynomolgus2Rhesus_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T19:45:37,463   copying celltypist/data/samples/Ensembl110_Human2Cynomolgus_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T19:45:37,474   copying celltypist/data/samples/Ensembl110_Human2Pig_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T19:45:37,486   copying celltypist/data/samples/Ensembl110_Human2Rhesus_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T19:45:37,498   copying celltypist/data/samples/Ensembl110_Pig2Mouse_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T19:45:37,505   copying celltypist/data/samples/Ensembl110_Rhesus2Mouse_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T19:45:37,515   copying celltypist/data/samples/Ensembl110_Rhesus2Pig_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T19:45:37,522   copying celltypist/data/samples/GENCODEv44_Gene_id2name.csv -> build/lib/celltypist/data/samples
2024-10-04T19:45:37,548   copying celltypist/data/samples/sample_cell_by_gene.csv -> build/lib/celltypist/data/samples
2024-10-04T19:45:38,341   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-10-04T19:45:38,342   !!

2024-10-04T19:45:38,344           ********************************************************************************
2024-10-04T19:45:38,344           Please avoid running ``setup.py`` directly.
2024-10-04T19:45:38,344           Instead, use pypa/build, pypa/installer or other
2024-10-04T19:45:38,345           standards-based tools.

2024-10-04T19:45:38,346           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-10-04T19:45:38,346           ********************************************************************************

2024-10-04T19:45:38,347   !!
2024-10-04T19:45:38,347     self.initialize_options()
2024-10-04T19:45:38,373   installing to build/bdist.linux-armv7l/wheel
2024-10-04T19:45:38,374   running install
2024-10-04T19:45:38,398   running install_lib
2024-10-04T19:45:38,426   creating build/bdist.linux-armv7l/wheel
2024-10-04T19:45:38,429   creating build/bdist.linux-armv7l/wheel/celltypist
2024-10-04T19:45:38,431   creating build/bdist.linux-armv7l/wheel/celltypist/data
2024-10-04T19:45:38,433   creating build/bdist.linux-armv7l/wheel/celltypist/data/samples
2024-10-04T19:45:38,435   copying build/lib/celltypist/data/samples/Ensembl110_Pig2Mouse_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T19:45:38,443   copying build/lib/celltypist/data/samples/Ensembl110_Cynomolgus2Rhesus_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T19:45:38,451   copying build/lib/celltypist/data/samples/Ensembl105_Human2Mouse_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T19:45:38,463   copying build/lib/celltypist/data/samples/sample_cell_by_gene.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T19:45:41,436   copying build/lib/celltypist/data/samples/Ensembl110_Rhesus2Pig_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T19:45:41,492   copying build/lib/celltypist/data/samples/Ensembl110_Human2Pig_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T19:45:41,511   copying build/lib/celltypist/data/samples/Ensembl110_Human2Rhesus_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T19:45:41,540   copying build/lib/celltypist/data/samples/Ensembl110_Cynomolgus2Pig_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T19:45:41,561   copying build/lib/celltypist/data/samples/Ensembl110_Human2Cynomolgus_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T19:45:41,584   copying build/lib/celltypist/data/samples/Ensembl110_Rhesus2Mouse_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T19:45:41,598   copying build/lib/celltypist/data/samples/GENCODEv44_Gene_id2name.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T19:45:41,656   copying build/lib/celltypist/data/samples/Ensembl110_Cynomolgus2Mouse_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T19:45:41,666   copying build/lib/celltypist/train.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T19:45:41,669   copying build/lib/celltypist/classifier.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T19:45:41,672   copying build/lib/celltypist/models.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T19:45:41,685   copying build/lib/celltypist/__init__.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T19:45:41,688   copying build/lib/celltypist/samples.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T19:45:41,691   copying build/lib/celltypist/plot.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T19:45:41,695   copying build/lib/celltypist/command_line.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T19:45:41,707   copying build/lib/celltypist/annotate.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T19:45:41,710   copying build/lib/celltypist/logger.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T19:45:41,712   running install_egg_info
2024-10-04T19:45:41,748   Copying celltypist_SO.egg-info to build/bdist.linux-armv7l/wheel/./celltypist_SO-1.6.3-py3.11.egg-info
2024-10-04T19:45:41,763   running install_scripts
2024-10-04T19:45:41,783   creating build/bdist.linux-armv7l/wheel/celltypist_SO-1.6.3.dist-info/WHEEL
2024-10-04T19:45:41,786   creating '/tmp/pip-wheel-zi62o9pe/celltypist_SO-1.6.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-10-04T19:45:41,788   adding 'celltypist/__init__.py'
2024-10-04T19:45:41,789   adding 'celltypist/annotate.py'
2024-10-04T19:45:41,793   adding 'celltypist/classifier.py'
2024-10-04T19:45:41,795   adding 'celltypist/command_line.py'
2024-10-04T19:45:41,796   adding 'celltypist/logger.py'
2024-10-04T19:45:41,799   adding 'celltypist/models.py'
2024-10-04T19:45:41,801   adding 'celltypist/plot.py'
2024-10-04T19:45:41,802   adding 'celltypist/samples.py'
2024-10-04T19:45:41,805   adding 'celltypist/train.py'
2024-10-04T19:45:41,925   adding 'celltypist/data/samples/Ensembl105_Human2Mouse_Genes.csv'
2024-10-04T19:45:41,990   adding 'celltypist/data/samples/Ensembl110_Cynomolgus2Mouse_Genes.csv'
2024-10-04T19:45:42,045   adding 'celltypist/data/samples/Ensembl110_Cynomolgus2Pig_Genes.csv'
2024-10-04T19:45:42,099   adding 'celltypist/data/samples/Ensembl110_Cynomolgus2Rhesus_Genes.csv'
2024-10-04T19:45:42,240   adding 'celltypist/data/samples/Ensembl110_Human2Cynomolgus_Genes.csv'
2024-10-04T19:45:42,381   adding 'celltypist/data/samples/Ensembl110_Human2Pig_Genes.csv'
2024-10-04T19:45:42,522   adding 'celltypist/data/samples/Ensembl110_Human2Rhesus_Genes.csv'
2024-10-04T19:45:42,586   adding 'celltypist/data/samples/Ensembl110_Pig2Mouse_Genes.csv'
2024-10-04T19:45:42,652   adding 'celltypist/data/samples/Ensembl110_Rhesus2Mouse_Genes.csv'
2024-10-04T19:45:42,709   adding 'celltypist/data/samples/Ensembl110_Rhesus2Pig_Genes.csv'
2024-10-04T19:45:42,926   adding 'celltypist/data/samples/GENCODEv44_Gene_id2name.csv'
2024-10-04T19:45:49,613   adding 'celltypist/data/samples/sample_cell_by_gene.csv'
2024-10-04T19:45:49,943   adding 'celltypist_SO-1.6.3.dist-info/LICENSE'
2024-10-04T19:45:49,948   adding 'celltypist_SO-1.6.3.dist-info/METADATA'
2024-10-04T19:45:49,950   adding 'celltypist_SO-1.6.3.dist-info/WHEEL'
2024-10-04T19:45:49,950   adding 'celltypist_SO-1.6.3.dist-info/entry_points.txt'
2024-10-04T19:45:49,951   adding 'celltypist_SO-1.6.3.dist-info/top_level.txt'
2024-10-04T19:45:49,952   adding 'celltypist_SO-1.6.3.dist-info/RECORD'
2024-10-04T19:45:50,045   removing build/bdist.linux-armv7l/wheel
2024-10-04T19:45:50,189   Building wheel for celltypist-so (setup.py): finished with status 'done'
2024-10-04T19:45:50,264   Created wheel for celltypist-so: filename=celltypist_SO-1.6.3-py3-none-any.whl size=7330871 sha256=3e4f0eaa0fe1bea345d914f6bfd7788cf0da98ba819df2d10aba8043281d9840
2024-10-04T19:45:50,265   Stored in directory: /tmp/pip-ephem-wheel-cache-ksh4uu85/wheels/43/b5/9c/e181148c11a885702a957a70e3ab8d2163f991762299e03f6c
2024-10-04T19:45:50,284 Successfully built celltypist-so
2024-10-04T19:45:50,457 Removed build tracker: '/tmp/pip-build-tracker-mbhjigz5'