2024-10-04T21:49:49,374 Created temporary directory: /tmp/pip-build-tracker-t3hmsxm4
2024-10-04T21:49:49,375 Initialized build tracking at /tmp/pip-build-tracker-t3hmsxm4
2024-10-04T21:49:49,375 Created build tracker: /tmp/pip-build-tracker-t3hmsxm4
2024-10-04T21:49:49,376 Entered build tracker: /tmp/pip-build-tracker-t3hmsxm4
2024-10-04T21:49:49,377 Created temporary directory: /tmp/pip-wheel-gprrqdl8
2024-10-04T21:49:49,381 Created temporary directory: /tmp/pip-ephem-wheel-cache-lsjtwvb5
2024-10-04T21:49:49,425 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-10-04T21:49:49,428 2 location(s) to search for versions of celltypist-so:
2024-10-04T21:49:49,428 * https://pypi.org/simple/celltypist-so/
2024-10-04T21:49:49,428 * https://www.piwheels.org/simple/celltypist-so/
2024-10-04T21:49:49,429 Fetching project page and analyzing links: https://pypi.org/simple/celltypist-so/
2024-10-04T21:49:49,430 Getting page https://pypi.org/simple/celltypist-so/
2024-10-04T21:49:49,431 Found index url https://pypi.org/simple/
2024-10-04T21:49:49,651 Fetched page https://pypi.org/simple/celltypist-so/ as application/vnd.pypi.simple.v1+json
2024-10-04T21:49:49,653   Skipping link: No binaries permitted for celltypist-so: https://files.pythonhosted.org/packages/1d/39/80065946193ebcf447417fdffc1f5f929a9e866602bc6bc2c0e197334006/celltypist_SO-1.6.3-py3-none-any.whl (from https://pypi.org/simple/celltypist-so/) (requires-python:>=3.6)
2024-10-04T21:49:49,654   Found link https://files.pythonhosted.org/packages/fa/ba/1a27e0fa5bca18c67399e3053cd650e4f32417618a6a25295f476de5ad7c/celltypist_so-1.6.3.tar.gz (from https://pypi.org/simple/celltypist-so/) (requires-python:>=3.6), version: 1.6.3
2024-10-04T21:49:49,654   Skipping link: No binaries permitted for celltypist-so: https://files.pythonhosted.org/packages/b2/c8/814e71b76e4d84e9ef8a7466a806169cf27c814e4f80a345db14c5e3636e/celltypist_SO-1.6.4-py3-none-any.whl (from https://pypi.org/simple/celltypist-so/) (requires-python:>=3.6)
2024-10-04T21:49:49,655   Found link https://files.pythonhosted.org/packages/86/35/a4b671f1e8a8c8b2d9d2ebd9bd69a798dfd9b9a947483d038ac907ca9bc0/celltypist_so-1.6.4.tar.gz (from https://pypi.org/simple/celltypist-so/) (requires-python:>=3.6), version: 1.6.4
2024-10-04T21:49:49,656 Fetching project page and analyzing links: https://www.piwheels.org/simple/celltypist-so/
2024-10-04T21:49:49,657 Getting page https://www.piwheels.org/simple/celltypist-so/
2024-10-04T21:49:49,658 Found index url https://www.piwheels.org/simple/
2024-10-04T21:49:49,821 Fetched page https://www.piwheels.org/simple/celltypist-so/ as text/html
2024-10-04T21:49:49,829   Skipping link: No binaries permitted for celltypist-so: https://www.piwheels.org/simple/celltypist-so/celltypist_SO-1.6.3-py3-none-any.whl#sha256=3e4f0eaa0fe1bea345d914f6bfd7788cf0da98ba819df2d10aba8043281d9840 (from https://www.piwheels.org/simple/celltypist-so/) (requires-python:>=3.6)
2024-10-04T21:49:49,829 Skipping link: not a file: https://www.piwheels.org/simple/celltypist-so/
2024-10-04T21:49:49,830 Skipping link: not a file: https://pypi.org/simple/celltypist-so/
2024-10-04T21:49:49,849 Given no hashes to check 1 links for project 'celltypist-so': discarding no candidates
2024-10-04T21:49:49,851 Collecting celltypist-so==1.6.4
2024-10-04T21:49:49,853   Created temporary directory: /tmp/pip-unpack-pn45jpwn
2024-10-04T21:49:50,086   Downloading celltypist_so-1.6.4.tar.gz (6.7 MB)
2024-10-04T21:49:53,069   Added celltypist-so==1.6.4 from https://files.pythonhosted.org/packages/86/35/a4b671f1e8a8c8b2d9d2ebd9bd69a798dfd9b9a947483d038ac907ca9bc0/celltypist_so-1.6.4.tar.gz to build tracker '/tmp/pip-build-tracker-t3hmsxm4'
2024-10-04T21:49:53,072   Running setup.py (path:/tmp/pip-wheel-gprrqdl8/celltypist-so_5ad5cdc7fa2f425fb5080d083b17f594/setup.py) egg_info for package celltypist-so
2024-10-04T21:49:53,073   Created temporary directory: /tmp/pip-pip-egg-info-5xl1cd6k
2024-10-04T21:49:53,074   Preparing metadata (setup.py): started
2024-10-04T21:49:53,075   Running command python setup.py egg_info
2024-10-04T21:49:54,180   running egg_info
2024-10-04T21:49:54,182   creating /tmp/pip-pip-egg-info-5xl1cd6k/celltypist_SO.egg-info
2024-10-04T21:49:54,207   writing /tmp/pip-pip-egg-info-5xl1cd6k/celltypist_SO.egg-info/PKG-INFO
2024-10-04T21:49:54,212   writing dependency_links to /tmp/pip-pip-egg-info-5xl1cd6k/celltypist_SO.egg-info/dependency_links.txt
2024-10-04T21:49:54,213   writing entry points to /tmp/pip-pip-egg-info-5xl1cd6k/celltypist_SO.egg-info/entry_points.txt
2024-10-04T21:49:54,215   writing requirements to /tmp/pip-pip-egg-info-5xl1cd6k/celltypist_SO.egg-info/requires.txt
2024-10-04T21:49:54,216   writing top-level names to /tmp/pip-pip-egg-info-5xl1cd6k/celltypist_SO.egg-info/top_level.txt
2024-10-04T21:49:54,217   writing manifest file '/tmp/pip-pip-egg-info-5xl1cd6k/celltypist_SO.egg-info/SOURCES.txt'
2024-10-04T21:49:54,307   reading manifest file '/tmp/pip-pip-egg-info-5xl1cd6k/celltypist_SO.egg-info/SOURCES.txt'
2024-10-04T21:49:54,309   reading manifest template 'MANIFEST.in'
2024-10-04T21:49:54,316   warning: no previously-included files matching '__pycache__' found under directory '*'
2024-10-04T21:49:54,316   warning: no previously-included files matching '*.pyc' found under directory '*'
2024-10-04T21:49:54,317   adding license file 'LICENSE'
2024-10-04T21:49:54,320   writing manifest file '/tmp/pip-pip-egg-info-5xl1cd6k/celltypist_SO.egg-info/SOURCES.txt'
2024-10-04T21:49:54,431   Preparing metadata (setup.py): finished with status 'done'
2024-10-04T21:49:54,437   Source in /tmp/pip-wheel-gprrqdl8/celltypist-so_5ad5cdc7fa2f425fb5080d083b17f594 has version 1.6.4, which satisfies requirement celltypist-so==1.6.4 from https://files.pythonhosted.org/packages/86/35/a4b671f1e8a8c8b2d9d2ebd9bd69a798dfd9b9a947483d038ac907ca9bc0/celltypist_so-1.6.4.tar.gz
2024-10-04T21:49:54,438   Removed celltypist-so==1.6.4 from https://files.pythonhosted.org/packages/86/35/a4b671f1e8a8c8b2d9d2ebd9bd69a798dfd9b9a947483d038ac907ca9bc0/celltypist_so-1.6.4.tar.gz from build tracker '/tmp/pip-build-tracker-t3hmsxm4'
2024-10-04T21:49:54,448 Created temporary directory: /tmp/pip-unpack-4o7boplr
2024-10-04T21:49:54,449 Created temporary directory: /tmp/pip-unpack-zgqc0m28
2024-10-04T21:49:54,449 Building wheels for collected packages: celltypist-so
2024-10-04T21:49:54,453   Created temporary directory: /tmp/pip-wheel-k2d5qh3_
2024-10-04T21:49:54,454   Building wheel for celltypist-so (setup.py): started
2024-10-04T21:49:54,455   Destination directory: /tmp/pip-wheel-k2d5qh3_
2024-10-04T21:49:54,456   Running command python setup.py bdist_wheel
2024-10-04T21:49:55,481   running bdist_wheel
2024-10-04T21:49:55,614   running build
2024-10-04T21:49:55,615   running build_py
2024-10-04T21:49:55,648   creating build/lib/celltypist
2024-10-04T21:49:55,650   copying celltypist/train.py -> build/lib/celltypist
2024-10-04T21:49:55,653   copying celltypist/classifier.py -> build/lib/celltypist
2024-10-04T21:49:55,656   copying celltypist/models.py -> build/lib/celltypist
2024-10-04T21:49:55,659   copying celltypist/__init__.py -> build/lib/celltypist
2024-10-04T21:49:55,661   copying celltypist/samples.py -> build/lib/celltypist
2024-10-04T21:49:55,663   copying celltypist/plot.py -> build/lib/celltypist
2024-10-04T21:49:55,665   copying celltypist/command_line.py -> build/lib/celltypist
2024-10-04T21:49:55,668   copying celltypist/annotate.py -> build/lib/celltypist
2024-10-04T21:49:55,670   copying celltypist/logger.py -> build/lib/celltypist
2024-10-04T21:49:55,671   running egg_info
2024-10-04T21:49:55,698   writing celltypist_SO.egg-info/PKG-INFO
2024-10-04T21:49:55,702   writing dependency_links to celltypist_SO.egg-info/dependency_links.txt
2024-10-04T21:49:55,704   writing entry points to celltypist_SO.egg-info/entry_points.txt
2024-10-04T21:49:55,706   writing requirements to celltypist_SO.egg-info/requires.txt
2024-10-04T21:49:55,707   writing top-level names to celltypist_SO.egg-info/top_level.txt
2024-10-04T21:49:55,737   reading manifest file 'celltypist_SO.egg-info/SOURCES.txt'
2024-10-04T21:49:55,743   reading manifest template 'MANIFEST.in'
2024-10-04T21:49:55,750   warning: no previously-included files matching '__pycache__' found under directory '*'
2024-10-04T21:49:55,751   warning: no previously-included files matching '*.pyc' found under directory '*'
2024-10-04T21:49:55,752   adding license file 'LICENSE'
2024-10-04T21:49:55,755   writing manifest file 'celltypist_SO.egg-info/SOURCES.txt'
2024-10-04T21:49:55,757   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'celltypist.data.samples' is absent from the `packages` configuration.
2024-10-04T21:49:55,758   !!

2024-10-04T21:49:55,759           ********************************************************************************
2024-10-04T21:49:55,759           ############################
2024-10-04T21:49:55,759           # Package would be ignored #
2024-10-04T21:49:55,760           ############################
2024-10-04T21:49:55,760           Python recognizes 'celltypist.data.samples' as an importable package[^1],
2024-10-04T21:49:55,761           but it is absent from setuptools' `packages` configuration.

2024-10-04T21:49:55,762           This leads to an ambiguous overall configuration. If you want to distribute this
2024-10-04T21:49:55,762           package, please make sure that 'celltypist.data.samples' is explicitly added
2024-10-04T21:49:55,762           to the `packages` configuration field.

2024-10-04T21:49:55,763           Alternatively, you can also rely on setuptools' discovery methods
2024-10-04T21:49:55,764           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-10-04T21:49:55,764           instead of `find_packages(...)`/`find:`).

2024-10-04T21:49:55,765           You can read more about "package discovery" on setuptools documentation page:

2024-10-04T21:49:55,766           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-10-04T21:49:55,768           If you don't want 'celltypist.data.samples' to be distributed and are
2024-10-04T21:49:55,768           already explicitly excluding 'celltypist.data.samples' via
2024-10-04T21:49:55,769           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-10-04T21:49:55,770           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-10-04T21:49:55,770           combination with a more fine grained `package-data` configuration.

2024-10-04T21:49:55,771           You can read more about "package data files" on setuptools documentation page:

2024-10-04T21:49:55,772           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-10-04T21:49:55,774           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-10-04T21:49:55,775                 even if it does not contain any `.py` files.
2024-10-04T21:49:55,775                 On the other hand, currently there is no concept of package data
2024-10-04T21:49:55,776                 directory, all directories are treated like packages.
2024-10-04T21:49:55,776           ********************************************************************************

2024-10-04T21:49:55,778   !!
2024-10-04T21:49:55,778     check.warn(importable)
2024-10-04T21:49:55,779   creating build/lib/celltypist/data/samples
2024-10-04T21:49:55,780   copying celltypist/data/samples/Ensembl105_Human2Mouse_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T21:49:55,783   copying celltypist/data/samples/Ensembl110_Cynomolgus2Mouse_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T21:49:55,790   copying celltypist/data/samples/Ensembl110_Cynomolgus2Pig_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T21:49:55,799   copying celltypist/data/samples/Ensembl110_Cynomolgus2Rhesus_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T21:49:55,810   copying celltypist/data/samples/Ensembl110_Human2Cynomolgus_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T21:49:55,821   copying celltypist/data/samples/Ensembl110_Human2Pig_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T21:49:55,835   copying celltypist/data/samples/Ensembl110_Human2Rhesus_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T21:49:55,846   copying celltypist/data/samples/Ensembl110_Pig2Mouse_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T21:49:55,855   copying celltypist/data/samples/Ensembl110_Rhesus2Mouse_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T21:49:55,863   copying celltypist/data/samples/Ensembl110_Rhesus2Pig_Genes.csv -> build/lib/celltypist/data/samples
2024-10-04T21:49:55,871   copying celltypist/data/samples/GENCODEv44_Gene_id2name.csv -> build/lib/celltypist/data/samples
2024-10-04T21:49:55,897   copying celltypist/data/samples/sample_cell_by_gene.csv -> build/lib/celltypist/data/samples
2024-10-04T21:49:56,727   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-10-04T21:49:56,728   !!

2024-10-04T21:49:56,729           ********************************************************************************
2024-10-04T21:49:56,730           Please avoid running ``setup.py`` directly.
2024-10-04T21:49:56,730           Instead, use pypa/build, pypa/installer or other
2024-10-04T21:49:56,731           standards-based tools.

2024-10-04T21:49:56,732           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-10-04T21:49:56,732           ********************************************************************************

2024-10-04T21:49:56,733   !!
2024-10-04T21:49:56,734     self.initialize_options()
2024-10-04T21:49:56,757   installing to build/bdist.linux-armv7l/wheel
2024-10-04T21:49:56,758   running install
2024-10-04T21:49:56,782   running install_lib
2024-10-04T21:49:56,811   creating build/bdist.linux-armv7l/wheel
2024-10-04T21:49:56,813   creating build/bdist.linux-armv7l/wheel/celltypist
2024-10-04T21:49:56,815   creating build/bdist.linux-armv7l/wheel/celltypist/data
2024-10-04T21:49:56,817   creating build/bdist.linux-armv7l/wheel/celltypist/data/samples
2024-10-04T21:49:56,818   copying build/lib/celltypist/data/samples/Ensembl110_Pig2Mouse_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T21:49:56,827   copying build/lib/celltypist/data/samples/Ensembl110_Cynomolgus2Rhesus_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T21:49:56,834   copying build/lib/celltypist/data/samples/Ensembl105_Human2Mouse_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T21:49:56,845   copying build/lib/celltypist/data/samples/sample_cell_by_gene.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T21:49:57,606   copying build/lib/celltypist/data/samples/Ensembl110_Rhesus2Pig_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T21:49:57,612   copying build/lib/celltypist/data/samples/Ensembl110_Human2Pig_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T21:49:57,622   copying build/lib/celltypist/data/samples/Ensembl110_Human2Rhesus_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T21:49:57,639   copying build/lib/celltypist/data/samples/Ensembl110_Cynomolgus2Pig_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T21:49:57,646   copying build/lib/celltypist/data/samples/Ensembl110_Human2Cynomolgus_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T21:49:57,659   copying build/lib/celltypist/data/samples/Ensembl110_Rhesus2Mouse_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T21:49:57,667   copying build/lib/celltypist/data/samples/GENCODEv44_Gene_id2name.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T21:49:57,692   copying build/lib/celltypist/data/samples/Ensembl110_Cynomolgus2Mouse_Genes.csv -> build/bdist.linux-armv7l/wheel/./celltypist/data/samples
2024-10-04T21:49:57,700   copying build/lib/celltypist/train.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T21:49:57,702   copying build/lib/celltypist/classifier.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T21:49:57,705   copying build/lib/celltypist/models.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T21:49:57,708   copying build/lib/celltypist/__init__.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T21:49:57,709   copying build/lib/celltypist/samples.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T21:49:57,711   copying build/lib/celltypist/plot.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T21:49:57,713   copying build/lib/celltypist/command_line.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T21:49:57,715   copying build/lib/celltypist/annotate.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T21:49:57,718   copying build/lib/celltypist/logger.py -> build/bdist.linux-armv7l/wheel/./celltypist
2024-10-04T21:49:57,719   running install_egg_info
2024-10-04T21:49:57,752   Copying celltypist_SO.egg-info to build/bdist.linux-armv7l/wheel/./celltypist_SO-1.6.4-py3.11.egg-info
2024-10-04T21:49:57,764   running install_scripts
2024-10-04T21:49:57,786   creating build/bdist.linux-armv7l/wheel/celltypist_SO-1.6.4.dist-info/WHEEL
2024-10-04T21:49:57,789   creating '/tmp/pip-wheel-k2d5qh3_/celltypist_SO-1.6.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-10-04T21:49:57,792   adding 'celltypist/__init__.py'
2024-10-04T21:49:57,794   adding 'celltypist/annotate.py'
2024-10-04T21:49:57,797   adding 'celltypist/classifier.py'
2024-10-04T21:49:57,799   adding 'celltypist/command_line.py'
2024-10-04T21:49:57,800   adding 'celltypist/logger.py'
2024-10-04T21:49:57,803   adding 'celltypist/models.py'
2024-10-04T21:49:57,805   adding 'celltypist/plot.py'
2024-10-04T21:49:57,806   adding 'celltypist/samples.py'
2024-10-04T21:49:57,809   adding 'celltypist/train.py'
2024-10-04T21:49:57,928   adding 'celltypist/data/samples/Ensembl105_Human2Mouse_Genes.csv'
2024-10-04T21:49:57,993   adding 'celltypist/data/samples/Ensembl110_Cynomolgus2Mouse_Genes.csv'
2024-10-04T21:49:58,047   adding 'celltypist/data/samples/Ensembl110_Cynomolgus2Pig_Genes.csv'
2024-10-04T21:49:58,101   adding 'celltypist/data/samples/Ensembl110_Cynomolgus2Rhesus_Genes.csv'
2024-10-04T21:49:58,239   adding 'celltypist/data/samples/Ensembl110_Human2Cynomolgus_Genes.csv'
2024-10-04T21:49:58,379   adding 'celltypist/data/samples/Ensembl110_Human2Pig_Genes.csv'
2024-10-04T21:49:58,519   adding 'celltypist/data/samples/Ensembl110_Human2Rhesus_Genes.csv'
2024-10-04T21:49:58,582   adding 'celltypist/data/samples/Ensembl110_Pig2Mouse_Genes.csv'
2024-10-04T21:49:58,647   adding 'celltypist/data/samples/Ensembl110_Rhesus2Mouse_Genes.csv'
2024-10-04T21:49:58,704   adding 'celltypist/data/samples/Ensembl110_Rhesus2Pig_Genes.csv'
2024-10-04T21:49:58,921   adding 'celltypist/data/samples/GENCODEv44_Gene_id2name.csv'
2024-10-04T21:50:05,578   adding 'celltypist/data/samples/sample_cell_by_gene.csv'
2024-10-04T21:50:05,908   adding 'celltypist_SO-1.6.4.dist-info/LICENSE'
2024-10-04T21:50:05,913   adding 'celltypist_SO-1.6.4.dist-info/METADATA'
2024-10-04T21:50:05,914   adding 'celltypist_SO-1.6.4.dist-info/WHEEL'
2024-10-04T21:50:05,915   adding 'celltypist_SO-1.6.4.dist-info/entry_points.txt'
2024-10-04T21:50:05,916   adding 'celltypist_SO-1.6.4.dist-info/top_level.txt'
2024-10-04T21:50:05,917   adding 'celltypist_SO-1.6.4.dist-info/RECORD'
2024-10-04T21:50:05,993   removing build/bdist.linux-armv7l/wheel
2024-10-04T21:50:06,136   Building wheel for celltypist-so (setup.py): finished with status 'done'
2024-10-04T21:50:06,212   Created wheel for celltypist-so: filename=celltypist_SO-1.6.4-py3-none-any.whl size=7330848 sha256=d2bd7f16ff2283b14fdb8ed1e424234bd70273dea3554acd6cc17874b9e2d5c9
2024-10-04T21:50:06,213   Stored in directory: /tmp/pip-ephem-wheel-cache-lsjtwvb5/wheels/7e/66/56/7f9ea9cebf69fd7f09be2f03e1565bbf9f6a3a143908699fb6
2024-10-04T21:50:06,231 Successfully built celltypist-so
2024-10-04T21:50:06,425 Removed build tracker: '/tmp/pip-build-tracker-t3hmsxm4'