2024-10-07T08:46:31,292 Created temporary directory: /tmp/pip-build-tracker-y5_amh62 2024-10-07T08:46:31,295 Initialized build tracking at /tmp/pip-build-tracker-y5_amh62 2024-10-07T08:46:31,295 Created build tracker: /tmp/pip-build-tracker-y5_amh62 2024-10-07T08:46:31,296 Entered build tracker: /tmp/pip-build-tracker-y5_amh62 2024-10-07T08:46:31,296 Created temporary directory: /tmp/pip-wheel-323e88th 2024-10-07T08:46:31,300 Created temporary directory: /tmp/pip-ephem-wheel-cache-m11ix8ly 2024-10-07T08:46:31,345 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-10-07T08:46:31,348 2 location(s) to search for versions of scipion-em-emready: 2024-10-07T08:46:31,348 * https://pypi.org/simple/scipion-em-emready/ 2024-10-07T08:46:31,348 * https://www.piwheels.org/simple/scipion-em-emready/ 2024-10-07T08:46:31,348 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-emready/ 2024-10-07T08:46:31,349 Getting page https://pypi.org/simple/scipion-em-emready/ 2024-10-07T08:46:31,351 Found index url https://pypi.org/simple/ 2024-10-07T08:46:31,574 Fetched page https://pypi.org/simple/scipion-em-emready/ as application/vnd.pypi.simple.v1+json 2024-10-07T08:46:31,577 Found link https://files.pythonhosted.org/packages/d2/83/2eacc5ffdf9fc5fbe1e83e94e75081f9231691dcbf24cf3a6c7c34c6b08d/scipion-em-emready-3.0.tar.gz (from https://pypi.org/simple/scipion-em-emready/), version: 3.0 2024-10-07T08:46:31,578 Skipping link: No binaries permitted for scipion-em-emready: https://files.pythonhosted.org/packages/03/32/01b8486c59c7791bc7b48fdb3f63329b6dd52aef516746ddf6fbbc9e61e6/scipion_em_emready-3.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emready/) 2024-10-07T08:46:31,578 Found link https://files.pythonhosted.org/packages/4c/e0/a5db497a711fc5b701f7573260746d4ba5181116d2ce478bb2871e2ff190/scipion-em-emready-3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-emready/), version: 3.0.1 2024-10-07T08:46:31,579 Skipping link: No binaries permitted for scipion-em-emready: https://files.pythonhosted.org/packages/c7/5a/087bee033713ed875b73ce7deb998de93049845cddccce3ea1b9e2acd7b8/scipion_em_emready-3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emready/) 2024-10-07T08:46:31,579 Found link https://files.pythonhosted.org/packages/5c/a7/c40a9b806fde439652319b8eb3f29b42c753eb8d6b2ed64e0b16d970527b/scipion-em-emready-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-emready/), version: 3.1.0 2024-10-07T08:46:31,580 Skipping link: No binaries permitted for scipion-em-emready: https://files.pythonhosted.org/packages/37/3a/288b9ebdf79a88dfab418b25b8ce5f8a7672925405c726b5d94e94acf462/scipion_em_emready-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emready/) 2024-10-07T08:46:31,581 Found link https://files.pythonhosted.org/packages/02/88/e22ada33e86dffeab6ef4c40670c43dfef389554642c7c79edb2d050d371/scipion-em-emready-3.1.1.tar.gz (from https://pypi.org/simple/scipion-em-emready/), version: 3.1.1 2024-10-07T08:46:31,581 Skipping link: No binaries permitted for scipion-em-emready: https://files.pythonhosted.org/packages/77/34/fea47db4926ac636752c2623b317c3fe0c2aef8adc2eeebb1fe1685dd1ad/scipion_em_emready-3.1.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-emready/) 2024-10-07T08:46:31,582 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-emready/ 2024-10-07T08:46:31,583 Getting page https://www.piwheels.org/simple/scipion-em-emready/ 2024-10-07T08:46:31,584 Found index url https://www.piwheels.org/simple/ 2024-10-07T08:46:31,754 Fetched page https://www.piwheels.org/simple/scipion-em-emready/ as text/html 2024-10-07T08:46:31,755 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-emready/ 2024-10-07T08:46:31,756 Skipping link: not a file: https://pypi.org/simple/scipion-em-emready/ 2024-10-07T08:46:31,775 Given no hashes to check 1 links for project 'scipion-em-emready': discarding no candidates 2024-10-07T08:46:31,777 Collecting scipion-em-emready==3.1.1 2024-10-07T08:46:31,780 Created temporary directory: /tmp/pip-unpack-ak21nf5s 2024-10-07T08:46:32,000 Downloading scipion-em-emready-3.1.1.tar.gz (21 kB) 2024-10-07T08:46:32,314 Added scipion-em-emready==3.1.1 from https://files.pythonhosted.org/packages/02/88/e22ada33e86dffeab6ef4c40670c43dfef389554642c7c79edb2d050d371/scipion-em-emready-3.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-y5_amh62' 2024-10-07T08:46:32,317 Running setup.py (path:/tmp/pip-wheel-323e88th/scipion-em-emready_e49b5d3e360f4acd89d48c9b7ca6070d/setup.py) egg_info for package scipion-em-emready 2024-10-07T08:46:32,318 Created temporary directory: /tmp/pip-pip-egg-info-d7r4k5ar 2024-10-07T08:46:32,319 Preparing metadata (setup.py): started 2024-10-07T08:46:32,321 Running command python setup.py egg_info 2024-10-07T08:46:32,828 Traceback (most recent call last): 2024-10-07T08:46:32,828 File "", line 2, in 2024-10-07T08:46:32,829 File "", line 34, in 2024-10-07T08:46:32,830 File "/tmp/pip-wheel-323e88th/scipion-em-emready_e49b5d3e360f4acd89d48c9b7ca6070d/setup.py", line 43, in 2024-10-07T08:46:32,831 from emready import __version__ 2024-10-07T08:46:32,831 File "/tmp/pip-wheel-323e88th/scipion-em-emready_e49b5d3e360f4acd89d48c9b7ca6070d/emready/__init__.py", line 28, in 2024-10-07T08:46:32,832 import pwem 2024-10-07T08:46:32,833 ModuleNotFoundError: No module named 'pwem' 2024-10-07T08:46:32,893 ERROR: python setup.py egg_info exited with 1 2024-10-07T08:46:32,906 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2024-10-07T08:46:32,906 exec(compile('"'"''"'"''"'"' 2024-10-07T08:46:32,906 # This is -- a caller that pip uses to run setup.py 2024-10-07T08:46:32,906 # 2024-10-07T08:46:32,906 # - It imports setuptools before invoking setup.py, to enable projects that directly 2024-10-07T08:46:32,906 # import from `distutils.core` to work with newer packaging standards. 2024-10-07T08:46:32,906 # - It provides a clear error message when setuptools is not installed. 2024-10-07T08:46:32,906 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2024-10-07T08:46:32,906 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2024-10-07T08:46:32,906 # manifest_maker: standard file '"'"'-c'"'"' not found". 2024-10-07T08:46:32,906 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2024-10-07T08:46:32,906 import os, sys, tokenize 2024-10-07T08:46:32,906 2024-10-07T08:46:32,906 try: 2024-10-07T08:46:32,906 import setuptools 2024-10-07T08:46:32,906 except ImportError as error: 2024-10-07T08:46:32,906 print( 2024-10-07T08:46:32,906 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2024-10-07T08:46:32,906 "the build environment.", 2024-10-07T08:46:32,906 file=sys.stderr, 2024-10-07T08:46:32,906 ) 2024-10-07T08:46:32,906 sys.exit(1) 2024-10-07T08:46:32,906 2024-10-07T08:46:32,906 __file__ = %r 2024-10-07T08:46:32,906 sys.argv[0] = __file__ 2024-10-07T08:46:32,906 2024-10-07T08:46:32,906 if os.path.exists(__file__): 2024-10-07T08:46:32,906 filename = __file__ 2024-10-07T08:46:32,906 with tokenize.open(__file__) as f: 2024-10-07T08:46:32,906 setup_py_code = f.read() 2024-10-07T08:46:32,906 else: 2024-10-07T08:46:32,906 filename = "" 2024-10-07T08:46:32,906 setup_py_code = "from setuptools import setup; setup()" 2024-10-07T08:46:32,906 2024-10-07T08:46:32,906 exec(compile(setup_py_code, filename, "exec")) 2024-10-07T08:46:32,906 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-323e88th/scipion-em-emready_e49b5d3e360f4acd89d48c9b7ca6070d/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-d7r4k5ar[/] 2024-10-07T08:46:32,907 [bold magenta]cwd[/]: /tmp/pip-wheel-323e88th/scipion-em-emready_e49b5d3e360f4acd89d48c9b7ca6070d/ 2024-10-07T08:46:32,907 Preparing metadata (setup.py): finished with status 'error' 2024-10-07T08:46:32,909 ERROR: metadata generation failed 2024-10-07T08:46:32,915 Exception information: 2024-10-07T08:46:32,915 Traceback (most recent call last): 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2024-10-07T08:46:32,915 call_subprocess( 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 209, in call_subprocess 2024-10-07T08:46:32,915 raise error 2024-10-07T08:46:32,915 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2024-10-07T08:46:32,915 2024-10-07T08:46:32,915 The above exception was the direct cause of the following exception: 2024-10-07T08:46:32,915 2024-10-07T08:46:32,915 Traceback (most recent call last): 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2024-10-07T08:46:32,915 status = _inner_run() 2024-10-07T08:46:32,915 ^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2024-10-07T08:46:32,915 return self.run(options, args) 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 67, in wrapper 2024-10-07T08:46:32,915 return func(self, options, args) 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2024-10-07T08:46:32,915 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 95, in resolve 2024-10-07T08:46:32,915 result = self._result = resolver.resolve( 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2024-10-07T08:46:32,915 state = resolution.resolve(requirements, max_rounds=max_rounds) 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2024-10-07T08:46:32,915 self._add_to_criteria(self.state.criteria, r, parent=None) 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2024-10-07T08:46:32,915 if not criterion.candidates: 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2024-10-07T08:46:32,915 return bool(self._sequence) 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 174, in __bool__ 2024-10-07T08:46:32,915 return any(self) 2024-10-07T08:46:32,915 ^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 162, in 2024-10-07T08:46:32,915 return (c for c in iterator if id(c) not in self._incompatible_ids) 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 53, in _iter_built 2024-10-07T08:46:32,915 candidate = func() 2024-10-07T08:46:32,915 ^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 186, in _make_candidate_from_link 2024-10-07T08:46:32,915 base: Optional[BaseCandidate] = self._make_base_candidate_from_link( 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 232, in _make_base_candidate_from_link 2024-10-07T08:46:32,915 self._link_candidate_cache[link] = LinkCandidate( 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 303, in __init__ 2024-10-07T08:46:32,915 super().__init__( 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 158, in __init__ 2024-10-07T08:46:32,915 self.dist = self._prepare() 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 235, in _prepare 2024-10-07T08:46:32,915 dist = self._prepare_distribution() 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 314, in _prepare_distribution 2024-10-07T08:46:32,915 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 527, in prepare_linked_requirement 2024-10-07T08:46:32,915 return self._prepare_linked_requirement(req, parallel_builds) 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 642, in _prepare_linked_requirement 2024-10-07T08:46:32,915 dist = _get_prepared_distribution( 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 72, in _get_prepared_distribution 2024-10-07T08:46:32,915 abstract_dist.prepare_distribution_metadata( 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 69, in prepare_distribution_metadata 2024-10-07T08:46:32,915 self.req.prepare_metadata() 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 581, in prepare_metadata 2024-10-07T08:46:32,915 self.metadata_directory = generate_metadata_legacy( 2024-10-07T08:46:32,915 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-10-07T08:46:32,915 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2024-10-07T08:46:32,915 raise MetadataGenerationFailed(package_details=details) from error 2024-10-07T08:46:32,915 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2024-10-07T08:46:32,928 Removed scipion-em-emready==3.1.1 from https://files.pythonhosted.org/packages/02/88/e22ada33e86dffeab6ef4c40670c43dfef389554642c7c79edb2d050d371/scipion-em-emready-3.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-y5_amh62' 2024-10-07T08:46:32,929 Removed build tracker: '/tmp/pip-build-tracker-y5_amh62'