2024-10-11T22:21:57,782 Disabling truststore because Python version isn't 3.10+ 2024-10-11T22:21:58,259 Created temporary directory: /tmp/pip-build-tracker-zdkhbz9o 2024-10-11T22:21:58,259 Initialized build tracking at /tmp/pip-build-tracker-zdkhbz9o 2024-10-11T22:21:58,260 Created build tracker: /tmp/pip-build-tracker-zdkhbz9o 2024-10-11T22:21:58,260 Entered build tracker: /tmp/pip-build-tracker-zdkhbz9o 2024-10-11T22:21:58,260 Created temporary directory: /tmp/pip-wheel-gfp706sy 2024-10-11T22:21:58,266 Created temporary directory: /tmp/pip-ephem-wheel-cache-8s7lo3r6 2024-10-11T22:21:58,309 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-10-11T22:21:58,312 2 location(s) to search for versions of lifton: 2024-10-11T22:21:58,312 * https://pypi.org/simple/lifton/ 2024-10-11T22:21:58,312 * https://www.piwheels.org/simple/lifton/ 2024-10-11T22:21:58,313 Fetching project page and analyzing links: https://pypi.org/simple/lifton/ 2024-10-11T22:21:58,313 Getting page https://pypi.org/simple/lifton/ 2024-10-11T22:21:58,315 Found index url https://pypi.org/simple/ 2024-10-11T22:21:58,412 Fetched page https://pypi.org/simple/lifton/ as application/vnd.pypi.simple.v1+json 2024-10-11T22:21:58,416 Skipping link: No binaries permitted for lifton: https://files.pythonhosted.org/packages/bb/6f/16db3cb001a27f878d0f0780d46ac46a080d5c4114119eed9e1087c33d18/lifton-0.0.1-py3-none-any.whl (from https://pypi.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,416 Found link https://files.pythonhosted.org/packages/13/2e/e8107811b9073a71d88b2a093509643eac35df4d083e4310baeff4767888/lifton-0.0.1.tar.gz (from https://pypi.org/simple/lifton/) (requires-python:>=3.6), version: 0.0.1 2024-10-11T22:21:58,417 Skipping link: No binaries permitted for lifton: https://files.pythonhosted.org/packages/24/96/25cb8f98833b41222d96adac8f647a269943f8c0075270bc17194ea39375/lifton-0.0.2-py3-none-any.whl (from https://pypi.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,417 Found link https://files.pythonhosted.org/packages/5f/c3/7f80480c767aa1e9d89a50bfbc3614e0c6b87bf09b4de7a0d613e95ae323/lifton-0.0.2.tar.gz (from https://pypi.org/simple/lifton/) (requires-python:>=3.6), version: 0.0.2 2024-10-11T22:21:58,418 Skipping link: No binaries permitted for lifton: https://files.pythonhosted.org/packages/61/42/c98e886ca0346735bf8811af6873bb9349cc4ccbe870efe4652056b60fe1/lifton-0.0.3-py3-none-any.whl (from https://pypi.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,418 Found link https://files.pythonhosted.org/packages/9d/4e/d5381bac5a6e00627cc252144df07b6ca20601e297d96acd3ac78556369b/lifton-0.0.3.tar.gz (from https://pypi.org/simple/lifton/) (requires-python:>=3.6), version: 0.0.3 2024-10-11T22:21:58,418 Skipping link: No binaries permitted for lifton: https://files.pythonhosted.org/packages/6e/ac/9d689d7909abf9a11d2ff73f2b314130fb66b7401b3c25d82ce2459d9a68/lifton-1.0.0-py3-none-any.whl (from https://pypi.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,419 Found link https://files.pythonhosted.org/packages/ff/e9/50ea1955e4902c023673006695e646362f3175ef403fc5d7c4803001325a/lifton-1.0.0.tar.gz (from https://pypi.org/simple/lifton/) (requires-python:>=3.6), version: 1.0.0 2024-10-11T22:21:58,419 Skipping link: No binaries permitted for lifton: https://files.pythonhosted.org/packages/02/70/5e343587dcd8812c840160e071a5ff2e07e9a1655fc938490d0a93b9f0bd/lifton-1.0.1-py3-none-any.whl (from https://pypi.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,420 Found link https://files.pythonhosted.org/packages/16/3d/5c53476aca8780a78384658e836ce19a8024600818016c27faec269dc15c/lifton-1.0.1.tar.gz (from https://pypi.org/simple/lifton/) (requires-python:>=3.6), version: 1.0.1 2024-10-11T22:21:58,420 Skipping link: No binaries permitted for lifton: https://files.pythonhosted.org/packages/32/90/fa0f61c0dab9576d3fb0690bbd13c8374f79ca1806a5a66d512fd3ba642e/lifton-1.0.2-py3-none-any.whl (from https://pypi.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,420 Found link https://files.pythonhosted.org/packages/5e/ab/12254450e995726fbb6531d8a1de325056bf04f36ec55a93d98e7893e7b2/lifton-1.0.2.tar.gz (from https://pypi.org/simple/lifton/) (requires-python:>=3.6), version: 1.0.2 2024-10-11T22:21:58,421 Skipping link: No binaries permitted for lifton: https://files.pythonhosted.org/packages/1e/05/87835b9ff1d10f97592a502541aa70c89b706289aab0a309cb717351a4b5/lifton-1.0.3-py3-none-any.whl (from https://pypi.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,421 Found link https://files.pythonhosted.org/packages/13/da/f82c8f3412080aa973dd58227620d522e45df8130847a29c504509f9344e/lifton-1.0.3.tar.gz (from https://pypi.org/simple/lifton/) (requires-python:>=3.6), version: 1.0.3 2024-10-11T22:21:58,421 Skipping link: No binaries permitted for lifton: https://files.pythonhosted.org/packages/05/25/73316389a1fcc307a66089743ac0922bc6358c681edff1199f66b90bd620/lifton-1.0.4-py3-none-any.whl (from https://pypi.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,422 Found link https://files.pythonhosted.org/packages/03/6f/5dae821080c1b8387483b094b2bac1550cd9688c33e9dc8c815718745b2a/lifton-1.0.4.tar.gz (from https://pypi.org/simple/lifton/) (requires-python:>=3.6), version: 1.0.4 2024-10-11T22:21:58,422 Skipping link: No binaries permitted for lifton: https://files.pythonhosted.org/packages/be/1d/c9fdcc2504969e09cceb1b50a61cd5ec460beaf6001e3aba7ce947418381/lifton-1.0.5-py3-none-any.whl (from https://pypi.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,423 Found link https://files.pythonhosted.org/packages/41/fe/f104f78020b1e3cc551b474d981e84a591beff89d6b2d1905b168b8909fb/lifton-1.0.5.tar.gz (from https://pypi.org/simple/lifton/) (requires-python:>=3.6), version: 1.0.5 2024-10-11T22:21:58,423 Fetching project page and analyzing links: https://www.piwheels.org/simple/lifton/ 2024-10-11T22:21:58,423 Getting page https://www.piwheels.org/simple/lifton/ 2024-10-11T22:21:58,424 Found index url https://www.piwheels.org/simple/ 2024-10-11T22:21:58,474 Fetched page https://www.piwheels.org/simple/lifton/ as text/html 2024-10-11T22:21:58,477 Skipping link: No binaries permitted for lifton: https://www.piwheels.org/simple/lifton/lifton-1.0.4-py3-none-any.whl#sha256=91232bf80a82ad9b6f5fee44851e897d0da9df0e9080c1e79582a458dd5d12b3 (from https://www.piwheels.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,478 Skipping link: No binaries permitted for lifton: https://www.piwheels.org/simple/lifton/lifton-1.0.3-py3-none-any.whl#sha256=374a8bbd23035f3deef02eb32d8bf0956226d1f297f6259ac1bd85ea90d7ba2e (from https://www.piwheels.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,478 Skipping link: No binaries permitted for lifton: https://www.piwheels.org/simple/lifton/lifton-1.0.2-py3-none-any.whl#sha256=9d1e8e6d9d99ce252f2e392514b37c6f7ede7e8d4b1b8e6ea0673d7bc4ef24ca (from https://www.piwheels.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,478 Skipping link: No binaries permitted for lifton: https://www.piwheels.org/simple/lifton/lifton-1.0.1-py3-none-any.whl#sha256=571ded1d00c28cdcaf33f56124aabb15e7d62176b66e7e7c3ab347675fab274c (from https://www.piwheels.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,478 Skipping link: No binaries permitted for lifton: https://www.piwheels.org/simple/lifton/lifton-1.0.0-py3-none-any.whl#sha256=1841d668f80b3a80f345edbf7999a8b2fa2d44c94e824f97385e328caed49ee4 (from https://www.piwheels.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,478 Skipping link: No binaries permitted for lifton: https://www.piwheels.org/simple/lifton/lifton-0.0.3-py3-none-any.whl#sha256=75bf7a2b29c1038d1a557078137bbc18589e636a45ab938e635f5ad1d178c4a4 (from https://www.piwheels.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,479 Skipping link: No binaries permitted for lifton: https://www.piwheels.org/simple/lifton/lifton-0.0.2-py3-none-any.whl#sha256=fc2e23edf13de3a32045a8523dc764b502b15ce3bef4a5ce9ec591af023f9d8b (from https://www.piwheels.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,479 Skipping link: No binaries permitted for lifton: https://www.piwheels.org/simple/lifton/lifton-0.0.1-py3-none-any.whl#sha256=a98808f9baa1174b52883629fe95d038b30e3bea493f18a55af481cdc670d536 (from https://www.piwheels.org/simple/lifton/) (requires-python:>=3.6) 2024-10-11T22:21:58,479 Skipping link: not a file: https://www.piwheels.org/simple/lifton/ 2024-10-11T22:21:58,479 Skipping link: not a file: https://pypi.org/simple/lifton/ 2024-10-11T22:21:58,497 Given no hashes to check 1 links for project 'lifton': discarding no candidates 2024-10-11T22:21:58,498 Collecting lifton==1.0.5 2024-10-11T22:21:58,500 Created temporary directory: /tmp/pip-unpack-62meshwv 2024-10-11T22:21:58,593 Downloading lifton-1.0.5.tar.gz (74 kB) 2024-10-11T22:21:58,705 Added lifton==1.0.5 from https://files.pythonhosted.org/packages/41/fe/f104f78020b1e3cc551b474d981e84a591beff89d6b2d1905b168b8909fb/lifton-1.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-zdkhbz9o' 2024-10-11T22:21:58,707 Running setup.py (path:/tmp/pip-wheel-gfp706sy/lifton_fb06bb944dd34b8c8c5bda4b574bc66d/setup.py) egg_info for package lifton 2024-10-11T22:21:58,708 Created temporary directory: /tmp/pip-pip-egg-info-4lkf97u5 2024-10-11T22:21:58,708 Preparing metadata (setup.py): started 2024-10-11T22:21:58,709 Running command python setup.py egg_info 2024-10-11T22:21:59,856 running egg_info 2024-10-11T22:21:59,858 creating /tmp/pip-pip-egg-info-4lkf97u5/lifton.egg-info 2024-10-11T22:21:59,885 writing /tmp/pip-pip-egg-info-4lkf97u5/lifton.egg-info/PKG-INFO 2024-10-11T22:21:59,889 writing dependency_links to /tmp/pip-pip-egg-info-4lkf97u5/lifton.egg-info/dependency_links.txt 2024-10-11T22:21:59,891 writing entry points to /tmp/pip-pip-egg-info-4lkf97u5/lifton.egg-info/entry_points.txt 2024-10-11T22:21:59,892 writing requirements to /tmp/pip-pip-egg-info-4lkf97u5/lifton.egg-info/requires.txt 2024-10-11T22:21:59,893 writing top-level names to /tmp/pip-pip-egg-info-4lkf97u5/lifton.egg-info/top_level.txt 2024-10-11T22:21:59,895 writing manifest file '/tmp/pip-pip-egg-info-4lkf97u5/lifton.egg-info/SOURCES.txt' 2024-10-11T22:21:59,986 reading manifest file '/tmp/pip-pip-egg-info-4lkf97u5/lifton.egg-info/SOURCES.txt' 2024-10-11T22:21:59,988 adding license file 'LICENSE' 2024-10-11T22:21:59,992 writing manifest file '/tmp/pip-pip-egg-info-4lkf97u5/lifton.egg-info/SOURCES.txt' 2024-10-11T22:22:00,082 Preparing metadata (setup.py): finished with status 'done' 2024-10-11T22:22:00,088 Source in /tmp/pip-wheel-gfp706sy/lifton_fb06bb944dd34b8c8c5bda4b574bc66d has version 1.0.5, which satisfies requirement lifton==1.0.5 from https://files.pythonhosted.org/packages/41/fe/f104f78020b1e3cc551b474d981e84a591beff89d6b2d1905b168b8909fb/lifton-1.0.5.tar.gz 2024-10-11T22:22:00,089 Removed lifton==1.0.5 from https://files.pythonhosted.org/packages/41/fe/f104f78020b1e3cc551b474d981e84a591beff89d6b2d1905b168b8909fb/lifton-1.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-zdkhbz9o' 2024-10-11T22:22:00,101 Created temporary directory: /tmp/pip-unpack-74x_9dla 2024-10-11T22:22:00,102 Created temporary directory: /tmp/pip-unpack-kvcg9pze 2024-10-11T22:22:00,102 Building wheels for collected packages: lifton 2024-10-11T22:22:00,106 Created temporary directory: /tmp/pip-wheel-ylte8f_h 2024-10-11T22:22:00,106 Building wheel for lifton (setup.py): started 2024-10-11T22:22:00,107 Destination directory: /tmp/pip-wheel-ylte8f_h 2024-10-11T22:22:00,107 Running command python setup.py bdist_wheel 2024-10-11T22:22:01,142 running bdist_wheel 2024-10-11T22:22:01,275 running build 2024-10-11T22:22:01,276 running build_py 2024-10-11T22:22:01,306 creating build/lib/lifton 2024-10-11T22:22:01,308 copying lifton/get_id_fraction.py -> build/lib/lifton 2024-10-11T22:22:01,310 copying lifton/variants.py -> build/lib/lifton 2024-10-11T22:22:01,312 copying lifton/protein_maximization.py -> build/lib/lifton 2024-10-11T22:22:01,314 copying lifton/lifton_class.py -> build/lib/lifton 2024-10-11T22:22:01,317 copying lifton/run_miniprot.py -> build/lib/lifton 2024-10-11T22:22:01,320 copying lifton/lifton.py -> build/lib/lifton 2024-10-11T22:22:01,322 copying lifton/run_liftoff.py -> build/lib/lifton 2024-10-11T22:22:01,324 copying lifton/intervals.py -> build/lib/lifton 2024-10-11T22:22:01,326 copying lifton/align.py -> build/lib/lifton 2024-10-11T22:22:01,328 copying lifton/logger.py -> build/lib/lifton 2024-10-11T22:22:01,330 copying lifton/stats.py -> build/lib/lifton 2024-10-11T22:22:01,332 copying lifton/annotation.py -> build/lib/lifton 2024-10-11T22:22:01,335 copying lifton/extract_sequence.py -> build/lib/lifton 2024-10-11T22:22:01,338 copying lifton/run_evaluation.py -> build/lib/lifton 2024-10-11T22:22:01,340 copying lifton/__init__.py -> build/lib/lifton 2024-10-11T22:22:01,342 copying lifton/lifton_utils.py -> build/lib/lifton 2024-10-11T22:22:01,346 creating build/lib/lifton/liftoff 2024-10-11T22:22:01,348 copying lifton/liftoff/feature_hierarchy.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,350 copying lifton/liftoff/write_new_gff.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,352 copying lifton/liftoff/lift_features.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,355 copying lifton/liftoff/liftoff_utils.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,358 copying lifton/liftoff/liftover_types.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,360 copying lifton/liftoff/find_best_mapping.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,363 copying lifton/liftoff/align_features.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,365 copying lifton/liftoff/aligned_seg.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,367 copying lifton/liftoff/polish.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,369 copying lifton/liftoff/fix_overlapping_features.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,371 copying lifton/liftoff/new_feature.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,373 copying lifton/liftoff/liftoff_main.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,376 copying lifton/liftoff/merge_lifted_features.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,378 copying lifton/liftoff/__init__.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,379 copying lifton/liftoff/extract_features.py -> build/lib/lifton/liftoff 2024-10-11T22:22:01,382 creating build/lib/lifton/liftoff/tests 2024-10-11T22:22:01,383 copying lifton/liftoff/tests/test_basic.py -> build/lib/lifton/liftoff/tests 2024-10-11T22:22:01,386 copying lifton/liftoff/tests/test_advanced.py -> build/lib/lifton/liftoff/tests 2024-10-11T22:22:01,388 copying lifton/liftoff/tests/__init__.py -> build/lib/lifton/liftoff/tests 2024-10-11T22:22:01,421 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-10-11T22:22:01,421 !! 2024-10-11T22:22:01,421 ******************************************************************************** 2024-10-11T22:22:01,421 Please avoid running ``setup.py`` directly. 2024-10-11T22:22:01,421 Instead, use pypa/build, pypa/installer or other 2024-10-11T22:22:01,421 standards-based tools. 2024-10-11T22:22:01,422 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-10-11T22:22:01,422 ******************************************************************************** 2024-10-11T22:22:01,422 !! 2024-10-11T22:22:01,422 self.initialize_options() 2024-10-11T22:22:01,447 installing to build/bdist.linux-armv7l/wheel 2024-10-11T22:22:01,447 running install 2024-10-11T22:22:01,473 running install_lib 2024-10-11T22:22:01,499 creating build/bdist.linux-armv7l/wheel 2024-10-11T22:22:01,501 creating build/bdist.linux-armv7l/wheel/lifton 2024-10-11T22:22:01,502 copying build/lib/lifton/get_id_fraction.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,504 copying build/lib/lifton/variants.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,506 copying build/lib/lifton/protein_maximization.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,508 copying build/lib/lifton/lifton_class.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,511 copying build/lib/lifton/run_miniprot.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,514 copying build/lib/lifton/lifton.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,516 copying build/lib/lifton/run_liftoff.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,519 copying build/lib/lifton/intervals.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,520 copying build/lib/lifton/align.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,523 copying build/lib/lifton/logger.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,524 copying build/lib/lifton/stats.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,527 copying build/lib/lifton/annotation.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,529 copying build/lib/lifton/extract_sequence.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,531 copying build/lib/lifton/run_evaluation.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,533 copying build/lib/lifton/__init__.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,535 creating build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-10-11T22:22:01,537 copying build/lib/lifton/liftoff/feature_hierarchy.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,539 copying build/lib/lifton/liftoff/write_new_gff.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,541 creating build/bdist.linux-armv7l/wheel/lifton/liftoff/tests 2024-10-11T22:22:01,543 copying build/lib/lifton/liftoff/tests/test_basic.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff/tests 2024-10-11T22:22:01,544 copying build/lib/lifton/liftoff/tests/test_advanced.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff/tests 2024-10-11T22:22:01,546 copying build/lib/lifton/liftoff/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff/tests 2024-10-11T22:22:01,548 copying build/lib/lifton/liftoff/lift_features.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,550 copying build/lib/lifton/liftoff/liftoff_utils.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,552 copying build/lib/lifton/liftoff/liftover_types.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,554 copying build/lib/lifton/liftoff/find_best_mapping.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,557 copying build/lib/lifton/liftoff/align_features.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,559 copying build/lib/lifton/liftoff/aligned_seg.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,561 copying build/lib/lifton/liftoff/polish.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,564 copying build/lib/lifton/liftoff/fix_overlapping_features.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,566 copying build/lib/lifton/liftoff/new_feature.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,568 copying build/lib/lifton/liftoff/liftoff_main.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,570 copying build/lib/lifton/liftoff/merge_lifted_features.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,572 copying build/lib/lifton/liftoff/__init__.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,573 copying build/lib/lifton/liftoff/extract_features.py -> build/bdist.linux-armv7l/wheel/./lifton/liftoff 2024-10-11T22:22:01,575 copying build/lib/lifton/lifton_utils.py -> build/bdist.linux-armv7l/wheel/./lifton 2024-10-11T22:22:01,578 running install_egg_info 2024-10-11T22:22:01,611 running egg_info 2024-10-11T22:22:01,637 writing lifton.egg-info/PKG-INFO 2024-10-11T22:22:01,642 writing dependency_links to lifton.egg-info/dependency_links.txt 2024-10-11T22:22:01,643 writing entry points to lifton.egg-info/entry_points.txt 2024-10-11T22:22:01,645 writing requirements to lifton.egg-info/requires.txt 2024-10-11T22:22:01,646 writing top-level names to lifton.egg-info/top_level.txt 2024-10-11T22:22:01,678 reading manifest file 'lifton.egg-info/SOURCES.txt' 2024-10-11T22:22:01,682 adding license file 'LICENSE' 2024-10-11T22:22:01,687 writing manifest file 'lifton.egg-info/SOURCES.txt' 2024-10-11T22:22:01,689 Copying lifton.egg-info to build/bdist.linux-armv7l/wheel/./lifton-1.0.5-py3.9.egg-info 2024-10-11T22:22:01,701 running install_scripts 2024-10-11T22:22:01,729 creating build/bdist.linux-armv7l/wheel/lifton-1.0.5.dist-info/WHEEL 2024-10-11T22:22:01,731 creating '/tmp/pip-wheel-ylte8f_h/lifton-1.0.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-10-11T22:22:01,733 adding 'lifton/__init__.py' 2024-10-11T22:22:01,735 adding 'lifton/align.py' 2024-10-11T22:22:01,736 adding 'lifton/annotation.py' 2024-10-11T22:22:01,738 adding 'lifton/extract_sequence.py' 2024-10-11T22:22:01,739 adding 'lifton/get_id_fraction.py' 2024-10-11T22:22:01,740 adding 'lifton/intervals.py' 2024-10-11T22:22:01,743 adding 'lifton/lifton.py' 2024-10-11T22:22:01,747 adding 'lifton/lifton_class.py' 2024-10-11T22:22:01,750 adding 'lifton/lifton_utils.py' 2024-10-11T22:22:01,752 adding 'lifton/logger.py' 2024-10-11T22:22:01,753 adding 'lifton/protein_maximization.py' 2024-10-11T22:22:01,755 adding 'lifton/run_evaluation.py' 2024-10-11T22:22:01,757 adding 'lifton/run_liftoff.py' 2024-10-11T22:22:01,758 adding 'lifton/run_miniprot.py' 2024-10-11T22:22:01,760 adding 'lifton/stats.py' 2024-10-11T22:22:01,761 adding 'lifton/variants.py' 2024-10-11T22:22:01,763 adding 'lifton/liftoff/__init__.py' 2024-10-11T22:22:01,765 adding 'lifton/liftoff/align_features.py' 2024-10-11T22:22:01,766 adding 'lifton/liftoff/aligned_seg.py' 2024-10-11T22:22:01,768 adding 'lifton/liftoff/extract_features.py' 2024-10-11T22:22:01,769 adding 'lifton/liftoff/feature_hierarchy.py' 2024-10-11T22:22:01,772 adding 'lifton/liftoff/find_best_mapping.py' 2024-10-11T22:22:01,774 adding 'lifton/liftoff/fix_overlapping_features.py' 2024-10-11T22:22:01,775 adding 'lifton/liftoff/lift_features.py' 2024-10-11T22:22:01,777 adding 'lifton/liftoff/liftoff_main.py' 2024-10-11T22:22:01,779 adding 'lifton/liftoff/liftoff_utils.py' 2024-10-11T22:22:01,780 adding 'lifton/liftoff/liftover_types.py' 2024-10-11T22:22:01,782 adding 'lifton/liftoff/merge_lifted_features.py' 2024-10-11T22:22:01,783 adding 'lifton/liftoff/new_feature.py' 2024-10-11T22:22:01,785 adding 'lifton/liftoff/polish.py' 2024-10-11T22:22:01,787 adding 'lifton/liftoff/write_new_gff.py' 2024-10-11T22:22:01,788 adding 'lifton/liftoff/tests/__init__.py' 2024-10-11T22:22:01,791 adding 'lifton/liftoff/tests/test_advanced.py' 2024-10-11T22:22:01,792 adding 'lifton/liftoff/tests/test_basic.py' 2024-10-11T22:22:01,799 adding 'lifton-1.0.5.dist-info/LICENSE' 2024-10-11T22:22:01,802 adding 'lifton-1.0.5.dist-info/METADATA' 2024-10-11T22:22:01,803 adding 'lifton-1.0.5.dist-info/WHEEL' 2024-10-11T22:22:01,804 adding 'lifton-1.0.5.dist-info/entry_points.txt' 2024-10-11T22:22:01,805 adding 'lifton-1.0.5.dist-info/top_level.txt' 2024-10-11T22:22:01,807 adding 'lifton-1.0.5.dist-info/RECORD' 2024-10-11T22:22:01,810 removing build/bdist.linux-armv7l/wheel 2024-10-11T22:22:01,913 Building wheel for lifton (setup.py): finished with status 'done' 2024-10-11T22:22:01,917 Created wheel for lifton: filename=lifton-1.0.5-py3-none-any.whl size=79487 sha256=56d27d847ec109365b05802e41017a0dc100730791bf7301934befe5a30c3336 2024-10-11T22:22:01,918 Stored in directory: /tmp/pip-ephem-wheel-cache-8s7lo3r6/wheels/62/a3/0d/e456f07d119d0d28ba29f4b0e5bb623ee5b4cef970887d55e8 2024-10-11T22:22:01,933 Successfully built lifton 2024-10-11T22:22:01,938 Removed build tracker: '/tmp/pip-build-tracker-zdkhbz9o'