2024-10-24T00:19:47,129 Created temporary directory: /tmp/pip-build-tracker-rc4exzhp 2024-10-24T00:19:47,130 Initialized build tracking at /tmp/pip-build-tracker-rc4exzhp 2024-10-24T00:19:47,130 Created build tracker: /tmp/pip-build-tracker-rc4exzhp 2024-10-24T00:19:47,131 Entered build tracker: /tmp/pip-build-tracker-rc4exzhp 2024-10-24T00:19:47,132 Created temporary directory: /tmp/pip-wheel-d2ijo40o 2024-10-24T00:19:47,136 Created temporary directory: /tmp/pip-ephem-wheel-cache-je8l01h5 2024-10-24T00:19:47,180 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-10-24T00:19:47,183 2 location(s) to search for versions of modelcif: 2024-10-24T00:19:47,183 * https://pypi.org/simple/modelcif/ 2024-10-24T00:19:47,183 * https://www.piwheels.org/simple/modelcif/ 2024-10-24T00:19:47,183 Fetching project page and analyzing links: https://pypi.org/simple/modelcif/ 2024-10-24T00:19:47,184 Getting page https://pypi.org/simple/modelcif/ 2024-10-24T00:19:47,186 Found index url https://pypi.org/simple/ 2024-10-24T00:19:47,405 Fetched page https://pypi.org/simple/modelcif/ as application/vnd.pypi.simple.v1+json 2024-10-24T00:19:47,408 Found link https://files.pythonhosted.org/packages/86/a5/ca2f0f3d28f3b45e87d8e9865ebd9a049c51cff212f51b2dcd6909d35738/modelcif-0.1.tar.gz (from https://pypi.org/simple/modelcif/), version: 0.1 2024-10-24T00:19:47,409 Found link https://files.pythonhosted.org/packages/c0/e4/41bb0130b42352675ae2190c3ac4ab34908e9e3f92b14c4551bcafc93564/modelcif-0.2.tar.gz (from https://pypi.org/simple/modelcif/), version: 0.2 2024-10-24T00:19:47,410 Found link https://files.pythonhosted.org/packages/f4/05/3d5e25e1a99cc28e4460a895bbb57831c7107f5365a610d135fb581017ac/modelcif-0.3.tar.gz (from https://pypi.org/simple/modelcif/), version: 0.3 2024-10-24T00:19:47,410 Found link https://files.pythonhosted.org/packages/d2/6f/c57d3c78010b217522695647886585df97053f625a4731221e60da5ca8ee/modelcif-0.4.tar.gz (from https://pypi.org/simple/modelcif/), version: 0.4 2024-10-24T00:19:47,411 Found link https://files.pythonhosted.org/packages/b0/a6/6306671254961b83234c7796b5cb65e6fa1a60dda379e48d474984464842/modelcif-0.5.tar.gz (from https://pypi.org/simple/modelcif/), version: 0.5 2024-10-24T00:19:47,412 Found link https://files.pythonhosted.org/packages/54/32/41d965a0d9eff134c58830ec90682fdb3b30ff59fcdf62a1ce5c51239a6e/modelcif-0.6.tar.gz (from https://pypi.org/simple/modelcif/), version: 0.6 2024-10-24T00:19:47,412 Found link https://files.pythonhosted.org/packages/96/0f/60aa4379b16b5fc7062a7f05eede21feaab737cf14b753ec114d449ea887/modelcif-0.7.tar.gz (from https://pypi.org/simple/modelcif/), version: 0.7 2024-10-24T00:19:47,413 Found link https://files.pythonhosted.org/packages/1d/50/9f731fabf3c6bf8a85b9555f395d12ad2eee45d88a8fecd332e4d85ea0a4/modelcif-0.8.tar.gz (from https://pypi.org/simple/modelcif/), version: 0.8 2024-10-24T00:19:47,413 Found link https://files.pythonhosted.org/packages/5c/4b/b50a56ed6d2d335813809b27ae4ea9862415b62163c8c10459e7ce738490/modelcif-0.9.tar.gz (from https://pypi.org/simple/modelcif/), version: 0.9 2024-10-24T00:19:47,414 Found link https://files.pythonhosted.org/packages/9b/4d/d9022a7bc5b68468d52c8ba30ea1b7aa541c0ec5af91244dbc0f4e888f6b/modelcif-1.0.tar.gz (from https://pypi.org/simple/modelcif/), version: 1.0 2024-10-24T00:19:47,415 Found link https://files.pythonhosted.org/packages/c7/58/f42d39b78ab2e6744dca79584acd59c3d2a767090b7328f3ebb886e61c56/modelcif-1.1.tar.gz (from https://pypi.org/simple/modelcif/), version: 1.1 2024-10-24T00:19:47,415 Found link https://files.pythonhosted.org/packages/25/e5/b1596a04070d7ac975534fef4e6e5f924a166b90558521f1912827906a87/modelcif-1.2.tar.gz (from https://pypi.org/simple/modelcif/), version: 1.2 2024-10-24T00:19:47,416 Fetching project page and analyzing links: https://www.piwheels.org/simple/modelcif/ 2024-10-24T00:19:47,417 Getting page https://www.piwheels.org/simple/modelcif/ 2024-10-24T00:19:47,418 Found index url https://www.piwheels.org/simple/ 2024-10-24T00:19:47,601 Fetched page https://www.piwheels.org/simple/modelcif/ as text/html 2024-10-24T00:19:47,605 Skipping link: No binaries permitted for modelcif: https://www.piwheels.org/simple/modelcif/modelcif-1.1-py3-none-any.whl#sha256=9357ab5c7d66b9a2444151cdf7d49a859b138f1e2ad44142321b0ac1b3d0342b (from https://www.piwheels.org/simple/modelcif/) 2024-10-24T00:19:47,606 Skipping link: No binaries permitted for modelcif: https://www.piwheels.org/simple/modelcif/modelcif-1.0-py3-none-any.whl#sha256=4782652706712e4ec8216ac169d5060b3cad34baa38a64dfb61bc8dd167bb973 (from https://www.piwheels.org/simple/modelcif/) 2024-10-24T00:19:47,607 Skipping link: No binaries permitted for modelcif: https://www.piwheels.org/simple/modelcif/modelcif-0.9-py3-none-any.whl#sha256=3db0d4df7570020db1d55ff08c97436acfe5d1db7fd778a257670a53f4dd9a1a (from https://www.piwheels.org/simple/modelcif/) 2024-10-24T00:19:47,607 Skipping link: No binaries permitted for modelcif: https://www.piwheels.org/simple/modelcif/modelcif-0.8-py3-none-any.whl#sha256=0411d65fded5464fba7e793c6a01057251bf3cda9782219f108c950ce4c2098a (from https://www.piwheels.org/simple/modelcif/) 2024-10-24T00:19:47,608 Skipping link: No binaries permitted for modelcif: https://www.piwheels.org/simple/modelcif/modelcif-0.7-py3-none-any.whl#sha256=07d83425989a8fc2ea50033649cf34ec26f301302a4fdab4852cced4449eb416 (from https://www.piwheels.org/simple/modelcif/) 2024-10-24T00:19:47,608 Skipping link: No binaries permitted for modelcif: https://www.piwheels.org/simple/modelcif/modelcif-0.6-py3-none-any.whl#sha256=801425688ac82395addadb3b309f8997c14e82f54a1d1f496709629a7cf0120f (from https://www.piwheels.org/simple/modelcif/) 2024-10-24T00:19:47,609 Skipping link: No binaries permitted for modelcif: https://www.piwheels.org/simple/modelcif/modelcif-0.5-py3-none-any.whl#sha256=8147a5f6f13bbbc25f264598c5b811918c46052a31cd8dc0f96d61a5c1a1f10e (from https://www.piwheels.org/simple/modelcif/) 2024-10-24T00:19:47,609 Skipping link: No binaries permitted for modelcif: https://www.piwheels.org/simple/modelcif/modelcif-0.4-py3-none-any.whl#sha256=6f0b768aea5f824a71925aafb9a24ada80a01e46d092fa10d716fc618d17f306 (from https://www.piwheels.org/simple/modelcif/) 2024-10-24T00:19:47,610 Skipping link: No binaries permitted for modelcif: https://www.piwheels.org/simple/modelcif/modelcif-0.3-py3-none-any.whl#sha256=29e9f2d6e46ceb2eb0db7184254c7f08855642868169dc34c42598c1854fe1f0 (from https://www.piwheels.org/simple/modelcif/) 2024-10-24T00:19:47,610 Skipping link: No binaries permitted for modelcif: https://www.piwheels.org/simple/modelcif/modelcif-0.2-py3-none-any.whl#sha256=e33a96339a2aac8c856cb699699a0b0085e5a55589fb463f0c369d974a8314ac (from https://www.piwheels.org/simple/modelcif/) 2024-10-24T00:19:47,611 Skipping link: No binaries permitted for modelcif: https://www.piwheels.org/simple/modelcif/modelcif-0.1-py3-none-any.whl#sha256=196dd0a0a4f66f3a926afb5bd2fee81d8e68eeb69a9e3c3daaeb388fad7d9467 (from https://www.piwheels.org/simple/modelcif/) 2024-10-24T00:19:47,611 Skipping link: not a file: https://www.piwheels.org/simple/modelcif/ 2024-10-24T00:19:47,612 Skipping link: not a file: https://pypi.org/simple/modelcif/ 2024-10-24T00:19:47,632 Given no hashes to check 1 links for project 'modelcif': discarding no candidates 2024-10-24T00:19:47,634 Collecting modelcif==1.2 2024-10-24T00:19:47,636 Created temporary directory: /tmp/pip-unpack-59dn24ln 2024-10-24T00:19:47,852 Downloading modelcif-1.2.tar.gz (66 kB) 2024-10-24T00:19:47,987 Added modelcif==1.2 from https://files.pythonhosted.org/packages/25/e5/b1596a04070d7ac975534fef4e6e5f924a166b90558521f1912827906a87/modelcif-1.2.tar.gz to build tracker '/tmp/pip-build-tracker-rc4exzhp' 2024-10-24T00:19:47,989 Running setup.py (path:/tmp/pip-wheel-d2ijo40o/modelcif_f29cbe968a7f4a7c9a232e309a776e37/setup.py) egg_info for package modelcif 2024-10-24T00:19:47,990 Created temporary directory: /tmp/pip-pip-egg-info-ucmufc_h 2024-10-24T00:19:47,991 Preparing metadata (setup.py): started 2024-10-24T00:19:47,992 Running command python setup.py egg_info 2024-10-24T00:19:49,084 running egg_info 2024-10-24T00:19:49,085 creating /tmp/pip-pip-egg-info-ucmufc_h/modelcif.egg-info 2024-10-24T00:19:49,112 writing /tmp/pip-pip-egg-info-ucmufc_h/modelcif.egg-info/PKG-INFO 2024-10-24T00:19:49,115 writing dependency_links to /tmp/pip-pip-egg-info-ucmufc_h/modelcif.egg-info/dependency_links.txt 2024-10-24T00:19:49,117 writing requirements to /tmp/pip-pip-egg-info-ucmufc_h/modelcif.egg-info/requires.txt 2024-10-24T00:19:49,118 writing top-level names to /tmp/pip-pip-egg-info-ucmufc_h/modelcif.egg-info/top_level.txt 2024-10-24T00:19:49,120 writing manifest file '/tmp/pip-pip-egg-info-ucmufc_h/modelcif.egg-info/SOURCES.txt' 2024-10-24T00:19:49,212 reading manifest file '/tmp/pip-pip-egg-info-ucmufc_h/modelcif.egg-info/SOURCES.txt' 2024-10-24T00:19:49,213 reading manifest template 'MANIFEST.in' 2024-10-24T00:19:49,215 adding license file 'LICENSE' 2024-10-24T00:19:49,219 writing manifest file '/tmp/pip-pip-egg-info-ucmufc_h/modelcif.egg-info/SOURCES.txt' 2024-10-24T00:19:49,327 Preparing metadata (setup.py): finished with status 'done' 2024-10-24T00:19:49,331 Source in /tmp/pip-wheel-d2ijo40o/modelcif_f29cbe968a7f4a7c9a232e309a776e37 has version 1.2, which satisfies requirement modelcif==1.2 from https://files.pythonhosted.org/packages/25/e5/b1596a04070d7ac975534fef4e6e5f924a166b90558521f1912827906a87/modelcif-1.2.tar.gz 2024-10-24T00:19:49,332 Removed modelcif==1.2 from https://files.pythonhosted.org/packages/25/e5/b1596a04070d7ac975534fef4e6e5f924a166b90558521f1912827906a87/modelcif-1.2.tar.gz from build tracker '/tmp/pip-build-tracker-rc4exzhp' 2024-10-24T00:19:49,337 Created temporary directory: /tmp/pip-unpack-1d_lwvzm 2024-10-24T00:19:49,338 Created temporary directory: /tmp/pip-unpack-u4lg3ojp 2024-10-24T00:19:49,339 Building wheels for collected packages: modelcif 2024-10-24T00:19:49,343 Created temporary directory: /tmp/pip-wheel-zbfhbt3d 2024-10-24T00:19:49,343 Building wheel for modelcif (setup.py): started 2024-10-24T00:19:49,345 Destination directory: /tmp/pip-wheel-zbfhbt3d 2024-10-24T00:19:49,345 Running command python setup.py bdist_wheel 2024-10-24T00:19:50,380 running bdist_wheel 2024-10-24T00:19:50,512 running build 2024-10-24T00:19:50,513 running build_py 2024-10-24T00:19:50,546 creating build/lib/modelcif 2024-10-24T00:19:50,548 copying modelcif/alignment.py -> build/lib/modelcif 2024-10-24T00:19:50,551 copying modelcif/model.py -> build/lib/modelcif 2024-10-24T00:19:50,553 copying modelcif/reader.py -> build/lib/modelcif 2024-10-24T00:19:50,556 copying modelcif/__init__.py -> build/lib/modelcif 2024-10-24T00:19:50,559 copying modelcif/reference.py -> build/lib/modelcif 2024-10-24T00:19:50,561 copying modelcif/descriptor.py -> build/lib/modelcif 2024-10-24T00:19:50,563 copying modelcif/associated.py -> build/lib/modelcif 2024-10-24T00:19:50,565 copying modelcif/dumper.py -> build/lib/modelcif 2024-10-24T00:19:50,568 copying modelcif/data.py -> build/lib/modelcif 2024-10-24T00:19:50,570 copying modelcif/qa_metric.py -> build/lib/modelcif 2024-10-24T00:19:50,572 copying modelcif/test.py -> build/lib/modelcif 2024-10-24T00:19:50,573 copying modelcif/protocol.py -> build/lib/modelcif 2024-10-24T00:19:50,576 creating build/lib/modelcif/util 2024-10-24T00:19:50,577 copying modelcif/util/make_mmcif.py -> build/lib/modelcif/util 2024-10-24T00:19:50,579 copying modelcif/util/__init__.py -> build/lib/modelcif/util 2024-10-24T00:19:50,610 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-10-24T00:19:50,611 !! 2024-10-24T00:19:50,612 ******************************************************************************** 2024-10-24T00:19:50,613 Please avoid running ``setup.py`` directly. 2024-10-24T00:19:50,613 Instead, use pypa/build, pypa/installer or other 2024-10-24T00:19:50,614 standards-based tools. 2024-10-24T00:19:50,615 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-10-24T00:19:50,616 ******************************************************************************** 2024-10-24T00:19:50,617 !! 2024-10-24T00:19:50,618 self.initialize_options() 2024-10-24T00:19:50,638 installing to build/bdist.linux-armv7l/wheel 2024-10-24T00:19:50,638 running install 2024-10-24T00:19:50,662 running install_lib 2024-10-24T00:19:50,689 creating build/bdist.linux-armv7l/wheel 2024-10-24T00:19:50,691 creating build/bdist.linux-armv7l/wheel/modelcif 2024-10-24T00:19:50,693 copying build/lib/modelcif/alignment.py -> build/bdist.linux-armv7l/wheel/./modelcif 2024-10-24T00:19:50,695 copying build/lib/modelcif/model.py -> build/bdist.linux-armv7l/wheel/./modelcif 2024-10-24T00:19:50,697 copying build/lib/modelcif/reader.py -> build/bdist.linux-armv7l/wheel/./modelcif 2024-10-24T00:19:50,700 copying build/lib/modelcif/__init__.py -> build/bdist.linux-armv7l/wheel/./modelcif 2024-10-24T00:19:50,703 copying build/lib/modelcif/reference.py -> build/bdist.linux-armv7l/wheel/./modelcif 2024-10-24T00:19:50,705 copying build/lib/modelcif/descriptor.py -> build/bdist.linux-armv7l/wheel/./modelcif 2024-10-24T00:19:50,707 copying build/lib/modelcif/associated.py -> build/bdist.linux-armv7l/wheel/./modelcif 2024-10-24T00:19:50,709 copying build/lib/modelcif/dumper.py -> build/bdist.linux-armv7l/wheel/./modelcif 2024-10-24T00:19:50,714 creating build/bdist.linux-armv7l/wheel/modelcif/util 2024-10-24T00:19:50,715 copying build/lib/modelcif/util/make_mmcif.py -> build/bdist.linux-armv7l/wheel/./modelcif/util 2024-10-24T00:19:50,717 copying build/lib/modelcif/util/__init__.py -> build/bdist.linux-armv7l/wheel/./modelcif/util 2024-10-24T00:19:50,719 copying build/lib/modelcif/data.py -> build/bdist.linux-armv7l/wheel/./modelcif 2024-10-24T00:19:50,720 copying build/lib/modelcif/qa_metric.py -> build/bdist.linux-armv7l/wheel/./modelcif 2024-10-24T00:19:50,722 copying build/lib/modelcif/test.py -> build/bdist.linux-armv7l/wheel/./modelcif 2024-10-24T00:19:50,724 copying build/lib/modelcif/protocol.py -> build/bdist.linux-armv7l/wheel/./modelcif 2024-10-24T00:19:50,726 running install_egg_info 2024-10-24T00:19:50,762 running egg_info 2024-10-24T00:19:50,788 writing modelcif.egg-info/PKG-INFO 2024-10-24T00:19:50,792 writing dependency_links to modelcif.egg-info/dependency_links.txt 2024-10-24T00:19:50,793 writing requirements to modelcif.egg-info/requires.txt 2024-10-24T00:19:50,794 writing top-level names to modelcif.egg-info/top_level.txt 2024-10-24T00:19:50,826 reading manifest file 'modelcif.egg-info/SOURCES.txt' 2024-10-24T00:19:50,830 reading manifest template 'MANIFEST.in' 2024-10-24T00:19:50,831 adding license file 'LICENSE' 2024-10-24T00:19:50,835 writing manifest file 'modelcif.egg-info/SOURCES.txt' 2024-10-24T00:19:50,837 Copying modelcif.egg-info to build/bdist.linux-armv7l/wheel/./modelcif-1.2-py3.11.egg-info 2024-10-24T00:19:50,846 running install_scripts 2024-10-24T00:19:50,858 creating build/bdist.linux-armv7l/wheel/modelcif-1.2.dist-info/WHEEL 2024-10-24T00:19:50,861 creating '/tmp/pip-wheel-zbfhbt3d/modelcif-1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-10-24T00:19:50,865 adding 'modelcif/__init__.py' 2024-10-24T00:19:50,867 adding 'modelcif/alignment.py' 2024-10-24T00:19:50,869 adding 'modelcif/associated.py' 2024-10-24T00:19:50,870 adding 'modelcif/data.py' 2024-10-24T00:19:50,872 adding 'modelcif/descriptor.py' 2024-10-24T00:19:50,876 adding 'modelcif/dumper.py' 2024-10-24T00:19:50,878 adding 'modelcif/model.py' 2024-10-24T00:19:50,879 adding 'modelcif/protocol.py' 2024-10-24T00:19:50,881 adding 'modelcif/qa_metric.py' 2024-10-24T00:19:50,886 adding 'modelcif/reader.py' 2024-10-24T00:19:50,888 adding 'modelcif/reference.py' 2024-10-24T00:19:50,889 adding 'modelcif/test.py' 2024-10-24T00:19:50,891 adding 'modelcif/util/__init__.py' 2024-10-24T00:19:50,893 adding 'modelcif/util/make_mmcif.py' 2024-10-24T00:19:50,895 adding 'modelcif-1.2.dist-info/LICENSE' 2024-10-24T00:19:50,896 adding 'modelcif-1.2.dist-info/METADATA' 2024-10-24T00:19:50,897 adding 'modelcif-1.2.dist-info/WHEEL' 2024-10-24T00:19:50,898 adding 'modelcif-1.2.dist-info/top_level.txt' 2024-10-24T00:19:50,899 adding 'modelcif-1.2.dist-info/RECORD' 2024-10-24T00:19:50,901 removing build/bdist.linux-armv7l/wheel 2024-10-24T00:19:51,017 Building wheel for modelcif (setup.py): finished with status 'done' 2024-10-24T00:19:51,020 Created wheel for modelcif: filename=modelcif-1.2-py3-none-any.whl size=41188 sha256=147248aaf156da9dc0c64182d75bb16ae5d97676921c2e3f360f804bf3d2c2b8 2024-10-24T00:19:51,021 Stored in directory: /tmp/pip-ephem-wheel-cache-je8l01h5/wheels/d2/3a/8c/e28cb28a15568d1b1b6163c77c945a5961351340fd15b9b4df 2024-10-24T00:19:51,031 Successfully built modelcif 2024-10-24T00:19:51,036 Removed build tracker: '/tmp/pip-build-tracker-rc4exzhp'