2024-11-02T23:47:25,968 Created temporary directory: /tmp/pip-build-tracker-wd8md_ci
2024-11-02T23:47:25,970 Initialized build tracking at /tmp/pip-build-tracker-wd8md_ci
2024-11-02T23:47:25,970 Created build tracker: /tmp/pip-build-tracker-wd8md_ci
2024-11-02T23:47:25,971 Entered build tracker: /tmp/pip-build-tracker-wd8md_ci
2024-11-02T23:47:25,971 Created temporary directory: /tmp/pip-wheel-rsafno_9
2024-11-02T23:47:25,975 Created temporary directory: /tmp/pip-ephem-wheel-cache-6ngnslay
2024-11-02T23:47:26,018 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-11-02T23:47:26,020 2 location(s) to search for versions of pub-worm:
2024-11-02T23:47:26,020 * https://pypi.org/simple/pub-worm/
2024-11-02T23:47:26,020 * https://www.piwheels.org/simple/pub-worm/
2024-11-02T23:47:26,021 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/
2024-11-02T23:47:26,022 Getting page https://pypi.org/simple/pub-worm/
2024-11-02T23:47:26,023 Found index url https://pypi.org/simple/
2024-11-02T23:47:26,245 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json
2024-11-02T23:47:26,251   Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1
2024-11-02T23:47:26,252   Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1
2024-11-02T23:47:26,253   Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2
2024-11-02T23:47:26,253   Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3
2024-11-02T23:47:26,254   Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4
2024-11-02T23:47:26,255   Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5
2024-11-02T23:47:26,255   Found link https://files.pythonhosted.org/packages/80/a0/1ce94f51ef16d83a09dea4f1985b068452c7880801597bd3eb82efd056fc/pub_worm-0.1.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.6
2024-11-02T23:47:26,256   Found link https://files.pythonhosted.org/packages/a3/21/a1cd9d1377b513ca7bb426346eb849aa4c84f3b3a3e1d80c0c7b05585d92/pub_worm-0.1.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.7
2024-11-02T23:47:26,257   Found link https://files.pythonhosted.org/packages/8f/fc/a0c2da18b286317e2843459c01336317cfeaa46efe28b278201968d1176d/pub_worm-0.1.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.8
2024-11-02T23:47:26,258   Found link https://files.pythonhosted.org/packages/05/8b/338f3714f1fa9c96e6eb4161453ee1686e7e852c3e568f53de43d9181cba/pub_worm-0.1.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.9
2024-11-02T23:47:26,258   Found link https://files.pythonhosted.org/packages/97/77/c5713bb989282f6cc978673a6444be453c991049862f200a583aae8061de/pub_worm-0.2.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.0
2024-11-02T23:47:26,259   Found link https://files.pythonhosted.org/packages/ba/54/2d9a593a5d99fea472983a809a8764698e89d7e9336eb4dece805bb685d1/pub_worm-0.2.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.1
2024-11-02T23:47:26,260   Found link https://files.pythonhosted.org/packages/da/24/bc0ded99393b36c2a10169df8df556b1ffa4efbcb6cc88c6d0d1245a4490/pub_worm-0.2.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.2
2024-11-02T23:47:26,260   Found link https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.3
2024-11-02T23:47:26,261   Found link https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.4
2024-11-02T23:47:26,262   Found link https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.5
2024-11-02T23:47:26,263   Found link https://files.pythonhosted.org/packages/7d/07/f0b969d2ecfe9daa5682c4565ed168d28aa1e45dff044a102bdb549c2cba/pub_worm-0.2.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.6
2024-11-02T23:47:26,263   Found link https://files.pythonhosted.org/packages/f5/e4/6c2a317ea14ff7acce17ad7087f4937e860cb48d28976812e19191e544e5/pub_worm-0.2.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.7
2024-11-02T23:47:26,264   Found link https://files.pythonhosted.org/packages/51/40/51943d1557acd97d0bd3c5e4ea9131e52649895cce775d41150299780858/pub_worm-0.2.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.8
2024-11-02T23:47:26,264   Found link https://files.pythonhosted.org/packages/96/9b/59b37b2341e80821c39f248138f73e554aa06b6ab437d44aca25ec803725/pub_worm-0.2.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.9
2024-11-02T23:47:26,265   Found link https://files.pythonhosted.org/packages/6a/ca/c5f05833b54c4ddb2b8d70e1c3e9631b195d28c7dc92cfbbd22d539d9f0e/pub_worm-0.3.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.0
2024-11-02T23:47:26,266   Found link https://files.pythonhosted.org/packages/85/d9/83a18281c7792db68fb6f9af515e5a50b5235c2d9816586d522060be97a7/pub_worm-0.3.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.1
2024-11-02T23:47:26,266   Found link https://files.pythonhosted.org/packages/d6/ea/750af1e220e8ea7ca825e574c5f8485c82cebc05826882f736e492d11d4a/pub_worm-0.3.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.2
2024-11-02T23:47:26,267   Found link https://files.pythonhosted.org/packages/8a/b9/75cdcce68e88b56c29aacadd8cc4229c649b54f1e2ec77582527997599ce/pub_worm-0.3.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.3
2024-11-02T23:47:26,268   Found link https://files.pythonhosted.org/packages/4e/3c/d7b15b0ca8d9ef436dd08e08a40d7b1e039c3a9e786a5e9dfa8101d02dd7/pub_worm-0.3.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.4
2024-11-02T23:47:26,269   Found link https://files.pythonhosted.org/packages/a0/0f/b34482f11648e05a16204f290f64ff41a798e896121355059e8b5f039c47/pub_worm-0.3.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.5
2024-11-02T23:47:26,269   Found link https://files.pythonhosted.org/packages/53/5c/99090a17cc43030da42e4951e37a6b81a1ea98a54f4b7e12db9e4a35c6f2/pub_worm-0.3.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.6
2024-11-02T23:47:26,270 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/
2024-11-02T23:47:26,271 Getting page https://www.piwheels.org/simple/pub-worm/
2024-11-02T23:47:26,272 Found index url https://www.piwheels.org/simple/
2024-11-02T23:47:26,441 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html
2024-11-02T23:47:26,448   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.3-py3-none-any.whl#sha256=da0d3ca0a782da9c6b12ec10ee6368664cb5c3c4fb652d55ac5ea0de063f95c0 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,449   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.2-py3-none-any.whl#sha256=8eb0af1a82d51754cf91c35469d2c0e3a47cee05f6570bd5c1fa918b9b457830 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,450   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.1-py3-none-any.whl#sha256=99d9dcd7ed7ebda453e569930ae75ceab3b9c7c8eeee77028acdd9c83809f0f3 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,450   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.0-py3-none-any.whl#sha256=25de0e60cf04e1f2361dafa06cd0ccc77faf62f68e246eb8e83301e354d9150a (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,451   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.9-py3-none-any.whl#sha256=0b5f756b21fa4c17fbed60801bd4dbc1fc1952ed843281a527c88d757d65485b (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,451   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.8-py3-none-any.whl#sha256=e38f0cefa270a92d5580a1df80252ec5a567937089f35923ee2f8fbaa4bab037 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,452   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.7-py3-none-any.whl#sha256=17c8216479e7796ddea333f1eccbc02c3362a728668da69bbf9e12b0239a9c8f (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,452   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.6-py3-none-any.whl#sha256=79f23813bcf27f437dd33b20d97761a1124ac1aa5aa80ff78557d4a6d78d0ff4 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,453   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.5-py3-none-any.whl#sha256=6372364213ad9038155851d20d7145b7fa44b8664abf2d718da4c2377fc3b56e (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,453   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.4-py3-none-any.whl#sha256=d426fb6e260eb1588f75b25281a6d726d740a9c88f34e8ffd0f0bbcd1e98acbc (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,454   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.3-py3-none-any.whl#sha256=08bbce548fac3ce388fa51fdcbf0a4b59a27180b5871a37d0bf5ced9c84e903a (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,454   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.2-py3-none-any.whl#sha256=1f5f09a3598f66e5a30431d4c93cd6b581049d7829a791820ecb783ddad91c19 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,455   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.1-py3-none-any.whl#sha256=2cd541418ccbf9158ab7e18b187c7d7bc297928fbb5f4817f84f67552fd20c2a (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,455   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.0-py3-none-any.whl#sha256=0fe4aa97fb602755d99717699395e7014f676d4ee4572930652a00f5b0407400 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,456   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.9-py3-none-any.whl#sha256=d36153a6672446b80a3ad4a128123f60f80f8f1444122936363fa80165d19f7a (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,457   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.8-py3-none-any.whl#sha256=ad3c0117baeaa8c04f86149fa0dd71f6ea65d60213da6d6b570d0157572afe2c (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,457   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.7-py3-none-any.whl#sha256=5b88eaacc4effbdf9cc173c4732a2ac60eac0a420ccac19ba626a2be72b7f12a (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,458   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.6-py3-none-any.whl#sha256=b18fb87705630077e0c3647f52c14b61e3b0ced91b1628a96bd5406c384f38ea (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,458   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.5-py3-none-any.whl#sha256=194f3e97c1023b9ba1e3ada69ff1de5c0883d9bf2e6c11d2b6173cf86f7d23ec (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,459   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.4-py3-none-any.whl#sha256=84de546e9b8e73c3cdbccb497a05d28c60537eda48d1b1fdb879be94e3fe3f27 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,460   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.3-py3-none-any.whl#sha256=c93d251f88dea0862a7a5878ea9d242ca2a3dfc38922c876268f91def0e576c1 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,460   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.2-py3-none-any.whl#sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,461   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,461   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:47:26,462 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/
2024-11-02T23:47:26,462 Skipping link: not a file: https://pypi.org/simple/pub-worm/
2024-11-02T23:47:26,483 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates
2024-11-02T23:47:26,485 Collecting pub-worm==0.3.5
2024-11-02T23:47:26,487   Created temporary directory: /tmp/pip-unpack-eyl41kv3
2024-11-02T23:47:26,705   Downloading pub_worm-0.3.5.tar.gz (396 kB)
2024-11-02T23:47:26,911   Added pub-worm==0.3.5 from https://files.pythonhosted.org/packages/a0/0f/b34482f11648e05a16204f290f64ff41a798e896121355059e8b5f039c47/pub_worm-0.3.5.tar.gz to build tracker '/tmp/pip-build-tracker-wd8md_ci'
2024-11-02T23:47:26,914   Running setup.py (path:/tmp/pip-wheel-rsafno_9/pub-worm_014500b94fa74ddea566922802845430/setup.py) egg_info for package pub-worm
2024-11-02T23:47:26,915   Created temporary directory: /tmp/pip-pip-egg-info-e62sugz2
2024-11-02T23:47:26,916   Preparing metadata (setup.py): started
2024-11-02T23:47:26,917   Running command python setup.py egg_info
2024-11-02T23:47:28,015   running egg_info
2024-11-02T23:47:28,042   creating /tmp/pip-pip-egg-info-e62sugz2/pub_worm.egg-info
2024-11-02T23:47:28,044   writing /tmp/pip-pip-egg-info-e62sugz2/pub_worm.egg-info/PKG-INFO
2024-11-02T23:47:28,047   writing dependency_links to /tmp/pip-pip-egg-info-e62sugz2/pub_worm.egg-info/dependency_links.txt
2024-11-02T23:47:28,049   writing requirements to /tmp/pip-pip-egg-info-e62sugz2/pub_worm.egg-info/requires.txt
2024-11-02T23:47:28,050   writing top-level names to /tmp/pip-pip-egg-info-e62sugz2/pub_worm.egg-info/top_level.txt
2024-11-02T23:47:28,052   writing manifest file '/tmp/pip-pip-egg-info-e62sugz2/pub_worm.egg-info/SOURCES.txt'
2024-11-02T23:47:28,147   reading manifest file '/tmp/pip-pip-egg-info-e62sugz2/pub_worm.egg-info/SOURCES.txt'
2024-11-02T23:47:28,149   reading manifest template 'MANIFEST.in'
2024-11-02T23:47:28,151   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-11-02T23:47:28,151   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-11-02T23:47:28,152   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-11-02T23:47:28,155   writing manifest file '/tmp/pip-pip-egg-info-e62sugz2/pub_worm.egg-info/SOURCES.txt'
2024-11-02T23:47:28,269   Preparing metadata (setup.py): finished with status 'done'
2024-11-02T23:47:28,273   Source in /tmp/pip-wheel-rsafno_9/pub-worm_014500b94fa74ddea566922802845430 has version 0.3.5, which satisfies requirement pub-worm==0.3.5 from https://files.pythonhosted.org/packages/a0/0f/b34482f11648e05a16204f290f64ff41a798e896121355059e8b5f039c47/pub_worm-0.3.5.tar.gz
2024-11-02T23:47:28,274   Removed pub-worm==0.3.5 from https://files.pythonhosted.org/packages/a0/0f/b34482f11648e05a16204f290f64ff41a798e896121355059e8b5f039c47/pub_worm-0.3.5.tar.gz from build tracker '/tmp/pip-build-tracker-wd8md_ci'
2024-11-02T23:47:28,279 Created temporary directory: /tmp/pip-unpack-zb0i7r5f
2024-11-02T23:47:28,280 Created temporary directory: /tmp/pip-unpack-gjuct8op
2024-11-02T23:47:28,280 Building wheels for collected packages: pub-worm
2024-11-02T23:47:28,285   Created temporary directory: /tmp/pip-wheel-zsotikly
2024-11-02T23:47:28,285   Building wheel for pub-worm (setup.py): started
2024-11-02T23:47:28,286   Destination directory: /tmp/pip-wheel-zsotikly
2024-11-02T23:47:28,287   Running command python setup.py bdist_wheel
2024-11-02T23:47:29,311   running bdist_wheel
2024-11-02T23:47:29,447   running build
2024-11-02T23:47:29,447   running build_py
2024-11-02T23:47:29,479   creating build/lib/pub_worm
2024-11-02T23:47:29,481   copying pub_worm/__init__.py -> build/lib/pub_worm
2024-11-02T23:47:29,483   creating build/lib/tests
2024-11-02T23:47:29,485   copying tests/__init__.py -> build/lib/tests
2024-11-02T23:47:29,487   creating build/lib/pub_worm/orcid
2024-11-02T23:47:29,488   copying pub_worm/orcid/orcid_api.py -> build/lib/pub_worm/orcid
2024-11-02T23:47:29,490   copying pub_worm/orcid/__init__.py -> build/lib/pub_worm/orcid
2024-11-02T23:47:29,493   creating build/lib/pub_worm/impact_factor
2024-11-02T23:47:29,494   copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor
2024-11-02T23:47:29,496   copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor
2024-11-02T23:47:29,498   creating build/lib/pub_worm/biorxiv
2024-11-02T23:47:29,499   copying pub_worm/biorxiv/__init__.py -> build/lib/pub_worm/biorxiv
2024-11-02T23:47:29,501   copying pub_worm/biorxiv/biorxiv_api.py -> build/lib/pub_worm/biorxiv
2024-11-02T23:47:29,504   creating build/lib/pub_worm/wormbase
2024-11-02T23:47:29,505   copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase
2024-11-02T23:47:29,507   copying pub_worm/wormbase/wormbase_util.py -> build/lib/pub_worm/wormbase
2024-11-02T23:47:29,509   copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase
2024-11-02T23:47:29,512   copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase
2024-11-02T23:47:29,514   creating build/lib/pub_worm/ensembl
2024-11-02T23:47:29,515   copying pub_worm/ensembl/__init__.py -> build/lib/pub_worm/ensembl
2024-11-02T23:47:29,517   copying pub_worm/ensembl/ensembl_api.py -> build/lib/pub_worm/ensembl
2024-11-02T23:47:29,520   creating build/lib/pub_worm/ncbi
2024-11-02T23:47:29,521   copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi
2024-11-02T23:47:29,523   copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi
2024-11-02T23:47:29,526   creating build/lib/tests/orcid
2024-11-02T23:47:29,527   copying tests/orcid/__init__.py -> build/lib/tests/orcid
2024-11-02T23:47:29,529   copying tests/orcid/test_orcid_api.py -> build/lib/tests/orcid
2024-11-02T23:47:29,531   creating build/lib/tests/impact_factor
2024-11-02T23:47:29,532   copying tests/impact_factor/test_get_impact_factor.py -> build/lib/tests/impact_factor
2024-11-02T23:47:29,534   copying tests/impact_factor/__init__.py -> build/lib/tests/impact_factor
2024-11-02T23:47:29,537   creating build/lib/tests/wormbase
2024-11-02T23:47:29,538   copying tests/wormbase/__init__.py -> build/lib/tests/wormbase
2024-11-02T23:47:29,539   copying tests/wormbase/test_wormbase_api.py -> build/lib/tests/wormbase
2024-11-02T23:47:29,542   creating build/lib/tests/ncbi
2024-11-02T23:47:29,543   copying tests/ncbi/__init__.py -> build/lib/tests/ncbi
2024-11-02T23:47:29,545   copying tests/ncbi/test_entreze_api.py -> build/lib/tests/ncbi
2024-11-02T23:47:29,547   running egg_info
2024-11-02T23:47:29,574   writing pub_worm.egg-info/PKG-INFO
2024-11-02T23:47:29,577   writing dependency_links to pub_worm.egg-info/dependency_links.txt
2024-11-02T23:47:29,579   writing requirements to pub_worm.egg-info/requires.txt
2024-11-02T23:47:29,580   writing top-level names to pub_worm.egg-info/top_level.txt
2024-11-02T23:47:29,617   reading manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-11-02T23:47:29,621   reading manifest template 'MANIFEST.in'
2024-11-02T23:47:29,622   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-11-02T23:47:29,623   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-11-02T23:47:29,624   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-11-02T23:47:29,627   writing manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-11-02T23:47:29,629   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration.
2024-11-02T23:47:29,630   !!

2024-11-02T23:47:29,631           ********************************************************************************
2024-11-02T23:47:29,631           ############################
2024-11-02T23:47:29,632           # Package would be ignored #
2024-11-02T23:47:29,632           ############################
2024-11-02T23:47:29,632           Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1],
2024-11-02T23:47:29,633           but it is absent from setuptools' `packages` configuration.

2024-11-02T23:47:29,634           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-02T23:47:29,634           package, please make sure that 'pub_worm.impact_factor.data' is explicitly added
2024-11-02T23:47:29,635           to the `packages` configuration field.

2024-11-02T23:47:29,636           Alternatively, you can also rely on setuptools' discovery methods
2024-11-02T23:47:29,636           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-02T23:47:29,637           instead of `find_packages(...)`/`find:`).

2024-11-02T23:47:29,638           You can read more about "package discovery" on setuptools documentation page:

2024-11-02T23:47:29,639           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-02T23:47:29,640           If you don't want 'pub_worm.impact_factor.data' to be distributed and are
2024-11-02T23:47:29,641           already explicitly excluding 'pub_worm.impact_factor.data' via
2024-11-02T23:47:29,641           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-02T23:47:29,642           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-02T23:47:29,643           combination with a more fine grained `package-data` configuration.

2024-11-02T23:47:29,644           You can read more about "package data files" on setuptools documentation page:

2024-11-02T23:47:29,645           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-02T23:47:29,647           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-02T23:47:29,649                 even if it does not contain any `.py` files.
2024-11-02T23:47:29,653                 On the other hand, currently there is no concept of package data
2024-11-02T23:47:29,655                 directory, all directories are treated like packages.
2024-11-02T23:47:29,658           ********************************************************************************

2024-11-02T23:47:29,663   !!
2024-11-02T23:47:29,664     check.warn(importable)
2024-11-02T23:47:29,665   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration.
2024-11-02T23:47:29,665   !!

2024-11-02T23:47:29,666           ********************************************************************************
2024-11-02T23:47:29,667           ############################
2024-11-02T23:47:29,667           # Package would be ignored #
2024-11-02T23:47:29,667           ############################
2024-11-02T23:47:29,668           Python recognizes 'pub_worm.wormbase.data' as an importable package[^1],
2024-11-02T23:47:29,668           but it is absent from setuptools' `packages` configuration.

2024-11-02T23:47:29,669           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-02T23:47:29,670           package, please make sure that 'pub_worm.wormbase.data' is explicitly added
2024-11-02T23:47:29,670           to the `packages` configuration field.

2024-11-02T23:47:29,671           Alternatively, you can also rely on setuptools' discovery methods
2024-11-02T23:47:29,671           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-02T23:47:29,671           instead of `find_packages(...)`/`find:`).

2024-11-02T23:47:29,672           You can read more about "package discovery" on setuptools documentation page:

2024-11-02T23:47:29,673           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-02T23:47:29,674           If you don't want 'pub_worm.wormbase.data' to be distributed and are
2024-11-02T23:47:29,674           already explicitly excluding 'pub_worm.wormbase.data' via
2024-11-02T23:47:29,675           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-02T23:47:29,675           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-02T23:47:29,676           combination with a more fine grained `package-data` configuration.

2024-11-02T23:47:29,677           You can read more about "package data files" on setuptools documentation page:

2024-11-02T23:47:29,678           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-02T23:47:29,679           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-02T23:47:29,680                 even if it does not contain any `.py` files.
2024-11-02T23:47:29,680                 On the other hand, currently there is no concept of package data
2024-11-02T23:47:29,681                 directory, all directories are treated like packages.
2024-11-02T23:47:29,681           ********************************************************************************

2024-11-02T23:47:29,683   !!
2024-11-02T23:47:29,683     check.warn(importable)
2024-11-02T23:47:29,684   creating build/lib/pub_worm/impact_factor/data
2024-11-02T23:47:29,684   copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data
2024-11-02T23:47:29,685   creating build/lib/pub_worm/wormbase/data
2024-11-02T23:47:29,686   copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data
2024-11-02T23:47:29,686   copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data
2024-11-02T23:47:29,687   copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data
2024-11-02T23:47:29,711   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-11-02T23:47:29,712   !!

2024-11-02T23:47:29,713           ********************************************************************************
2024-11-02T23:47:29,714           Please avoid running ``setup.py`` directly.
2024-11-02T23:47:29,714           Instead, use pypa/build, pypa/installer or other
2024-11-02T23:47:29,715           standards-based tools.

2024-11-02T23:47:29,716           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-11-02T23:47:29,716           ********************************************************************************

2024-11-02T23:47:29,718   !!
2024-11-02T23:47:29,718     self.initialize_options()
2024-11-02T23:47:29,740   installing to build/bdist.linux-armv7l/wheel
2024-11-02T23:47:29,741   running install
2024-11-02T23:47:29,766   running install_lib
2024-11-02T23:47:29,793   creating build/bdist.linux-armv7l/wheel
2024-11-02T23:47:29,795   creating build/bdist.linux-armv7l/wheel/pub_worm
2024-11-02T23:47:29,797   creating build/bdist.linux-armv7l/wheel/pub_worm/orcid
2024-11-02T23:47:29,798   copying build/lib/pub_worm/orcid/orcid_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid
2024-11-02T23:47:29,801   copying build/lib/pub_worm/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid
2024-11-02T23:47:29,803   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor
2024-11-02T23:47:29,804   copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor
2024-11-02T23:47:29,806   copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor
2024-11-02T23:47:29,808   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data
2024-11-02T23:47:29,809   copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor/data
2024-11-02T23:47:29,830   copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm
2024-11-02T23:47:29,832   creating build/bdist.linux-armv7l/wheel/pub_worm/biorxiv
2024-11-02T23:47:29,833   copying build/lib/pub_worm/biorxiv/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/biorxiv
2024-11-02T23:47:29,835   copying build/lib/pub_worm/biorxiv/biorxiv_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/biorxiv
2024-11-02T23:47:29,838   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-11-02T23:47:29,839   copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-11-02T23:47:29,841   copying build/lib/pub_worm/wormbase/wormbase_util.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-11-02T23:47:29,843   copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-11-02T23:47:29,845   copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-11-02T23:47:29,847   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-11-02T23:47:29,849   copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-11-02T23:47:29,851   copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-11-02T23:47:29,852   copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-11-02T23:47:29,854   creating build/bdist.linux-armv7l/wheel/pub_worm/ensembl
2024-11-02T23:47:29,855   copying build/lib/pub_worm/ensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl
2024-11-02T23:47:29,857   copying build/lib/pub_worm/ensembl/ensembl_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl
2024-11-02T23:47:29,859   creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-11-02T23:47:29,861   copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi
2024-11-02T23:47:29,862   copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi
2024-11-02T23:47:29,866   creating build/bdist.linux-armv7l/wheel/tests
2024-11-02T23:47:29,867   creating build/bdist.linux-armv7l/wheel/tests/orcid
2024-11-02T23:47:29,868   copying build/lib/tests/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/orcid
2024-11-02T23:47:29,870   copying build/lib/tests/orcid/test_orcid_api.py -> build/bdist.linux-armv7l/wheel/./tests/orcid
2024-11-02T23:47:29,872   creating build/bdist.linux-armv7l/wheel/tests/impact_factor
2024-11-02T23:47:29,873   copying build/lib/tests/impact_factor/test_get_impact_factor.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor
2024-11-02T23:47:29,876   copying build/lib/tests/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor
2024-11-02T23:47:29,877   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests
2024-11-02T23:47:29,879   creating build/bdist.linux-armv7l/wheel/tests/wormbase
2024-11-02T23:47:29,880   copying build/lib/tests/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase
2024-11-02T23:47:29,881   copying build/lib/tests/wormbase/test_wormbase_api.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase
2024-11-02T23:47:29,883   creating build/bdist.linux-armv7l/wheel/tests/ncbi
2024-11-02T23:47:29,885   copying build/lib/tests/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi
2024-11-02T23:47:29,886   copying build/lib/tests/ncbi/test_entreze_api.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi
2024-11-02T23:47:29,888   running install_egg_info
2024-11-02T23:47:29,921   Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/./pub_worm-0.3.5-py3.11.egg-info
2024-11-02T23:47:29,933   running install_scripts
2024-11-02T23:47:29,944   creating build/bdist.linux-armv7l/wheel/pub_worm-0.3.5.dist-info/WHEEL
2024-11-02T23:47:29,946   creating '/tmp/pip-wheel-zsotikly/pub_worm-0.3.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-11-02T23:47:29,948   adding 'pub_worm/__init__.py'
2024-11-02T23:47:29,950   adding 'pub_worm/biorxiv/__init__.py'
2024-11-02T23:47:29,951   adding 'pub_worm/biorxiv/biorxiv_api.py'
2024-11-02T23:47:29,953   adding 'pub_worm/ensembl/__init__.py'
2024-11-02T23:47:29,954   adding 'pub_worm/ensembl/ensembl_api.py'
2024-11-02T23:47:29,956   adding 'pub_worm/impact_factor/__init__.py'
2024-11-02T23:47:29,957   adding 'pub_worm/impact_factor/impact_factor_lookup.py'
2024-11-02T23:47:30,121   adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv'
2024-11-02T23:47:30,132   adding 'pub_worm/ncbi/__init__.py'
2024-11-02T23:47:30,134   adding 'pub_worm/ncbi/entreze_api.py'
2024-11-02T23:47:30,136   adding 'pub_worm/orcid/__init__.py'
2024-11-02T23:47:30,137   adding 'pub_worm/orcid/orcid_api.py'
2024-11-02T23:47:30,139   adding 'pub_worm/wormbase/__init__.py'
2024-11-02T23:47:30,140   adding 'pub_worm/wormbase/to_csv_helpers.py'
2024-11-02T23:47:30,142   adding 'pub_worm/wormbase/wormbase_api.py'
2024-11-02T23:47:30,144   adding 'pub_worm/wormbase/wormbase_util.py'
2024-11-02T23:47:30,145   adding 'pub_worm/wormbase/data/wormbase_field_gene.json'
2024-11-02T23:47:30,146   adding 'pub_worm/wormbase/data/wormbase_field_paper.json'
2024-11-02T23:47:30,148   adding 'pub_worm/wormbase/data/wormbase_widget_gene.json'
2024-11-02T23:47:30,150   adding 'tests/__init__.py'
2024-11-02T23:47:30,151   adding 'tests/impact_factor/__init__.py'
2024-11-02T23:47:30,153   adding 'tests/impact_factor/test_get_impact_factor.py'
2024-11-02T23:47:30,154   adding 'tests/ncbi/__init__.py'
2024-11-02T23:47:30,156   adding 'tests/ncbi/test_entreze_api.py'
2024-11-02T23:47:30,157   adding 'tests/orcid/__init__.py'
2024-11-02T23:47:30,159   adding 'tests/orcid/test_orcid_api.py'
2024-11-02T23:47:30,160   adding 'tests/wormbase/__init__.py'
2024-11-02T23:47:30,162   adding 'tests/wormbase/test_wormbase_api.py'
2024-11-02T23:47:30,163   adding 'pub_worm-0.3.5.dist-info/METADATA'
2024-11-02T23:47:30,164   adding 'pub_worm-0.3.5.dist-info/WHEEL'
2024-11-02T23:47:30,165   adding 'pub_worm-0.3.5.dist-info/top_level.txt'
2024-11-02T23:47:30,166   adding 'pub_worm-0.3.5.dist-info/RECORD'
2024-11-02T23:47:30,171   removing build/bdist.linux-armv7l/wheel
2024-11-02T23:47:30,294   Building wheel for pub-worm (setup.py): finished with status 'done'
2024-11-02T23:47:30,301   Created wheel for pub-worm: filename=pub_worm-0.3.5-py3-none-any.whl size=402702 sha256=bad9dfb714fc15468d1ace297ca326dfdba5e55d1179672948eadd15ac39cc61
2024-11-02T23:47:30,302   Stored in directory: /tmp/pip-ephem-wheel-cache-6ngnslay/wheels/eb/f1/61/fa5049163f803a70fd516292cfce762638f544d28d452ddba2
2024-11-02T23:47:30,312 Successfully built pub-worm
2024-11-02T23:47:30,330 Removed build tracker: '/tmp/pip-build-tracker-wd8md_ci'