2024-11-02T23:52:22,357 Created temporary directory: /tmp/pip-build-tracker-gj7owozj
2024-11-02T23:52:22,358 Initialized build tracking at /tmp/pip-build-tracker-gj7owozj
2024-11-02T23:52:22,358 Created build tracker: /tmp/pip-build-tracker-gj7owozj
2024-11-02T23:52:22,359 Entered build tracker: /tmp/pip-build-tracker-gj7owozj
2024-11-02T23:52:22,360 Created temporary directory: /tmp/pip-wheel-ybr_b9qa
2024-11-02T23:52:22,364 Created temporary directory: /tmp/pip-ephem-wheel-cache-8kg57v6j
2024-11-02T23:52:22,409 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-11-02T23:52:22,412 2 location(s) to search for versions of pub-worm:
2024-11-02T23:52:22,412 * https://pypi.org/simple/pub-worm/
2024-11-02T23:52:22,412 * https://www.piwheels.org/simple/pub-worm/
2024-11-02T23:52:22,412 Fetching project page and analyzing links: https://pypi.org/simple/pub-worm/
2024-11-02T23:52:22,413 Getting page https://pypi.org/simple/pub-worm/
2024-11-02T23:52:22,415 Found index url https://pypi.org/simple/
2024-11-02T23:52:22,559 Fetched page https://pypi.org/simple/pub-worm/ as application/vnd.pypi.simple.v1+json
2024-11-02T23:52:22,565   Found link https://files.pythonhosted.org/packages/b8/f0/9bb3afc5b9c0aba5ffc3e0530f85826c7d472bd722f814015247c340fb9f/pub_worm-0.0.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.0.1
2024-11-02T23:52:22,566   Found link https://files.pythonhosted.org/packages/d8/da/df592d4da97e43ba80b8d21977686643e2fe53863198e8636d52f8385c43/pub_worm-0.1.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.1
2024-11-02T23:52:22,566   Found link https://files.pythonhosted.org/packages/6f/b8/c578681405080946ef981f7d8ffca920a824488067c8d71585d3ed6a579d/pub_worm-0.1.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.2
2024-11-02T23:52:22,567   Found link https://files.pythonhosted.org/packages/95/ea/f0d51e75f6a6bc592da883218d988cf193bf319166fa473a9b9b88e8d264/pub_worm-0.1.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.3
2024-11-02T23:52:22,568   Found link https://files.pythonhosted.org/packages/75/a9/79c8f5eedf2bb7efb9da2d0fe145f73a38f517eb8598c34ee7c96cde0708/pub_worm-0.1.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.4
2024-11-02T23:52:22,568   Found link https://files.pythonhosted.org/packages/49/b1/562faa427fd1ff40c449f87cda75c7c1df17d70bb5190dd9acaa36d175b1/pub_worm-0.1.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.5
2024-11-02T23:52:22,569   Found link https://files.pythonhosted.org/packages/80/a0/1ce94f51ef16d83a09dea4f1985b068452c7880801597bd3eb82efd056fc/pub_worm-0.1.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.6
2024-11-02T23:52:22,570   Found link https://files.pythonhosted.org/packages/a3/21/a1cd9d1377b513ca7bb426346eb849aa4c84f3b3a3e1d80c0c7b05585d92/pub_worm-0.1.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.7
2024-11-02T23:52:22,570   Found link https://files.pythonhosted.org/packages/8f/fc/a0c2da18b286317e2843459c01336317cfeaa46efe28b278201968d1176d/pub_worm-0.1.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.8
2024-11-02T23:52:22,571   Found link https://files.pythonhosted.org/packages/05/8b/338f3714f1fa9c96e6eb4161453ee1686e7e852c3e568f53de43d9181cba/pub_worm-0.1.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.1.9
2024-11-02T23:52:22,572   Found link https://files.pythonhosted.org/packages/97/77/c5713bb989282f6cc978673a6444be453c991049862f200a583aae8061de/pub_worm-0.2.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.0
2024-11-02T23:52:22,573   Found link https://files.pythonhosted.org/packages/ba/54/2d9a593a5d99fea472983a809a8764698e89d7e9336eb4dece805bb685d1/pub_worm-0.2.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.1
2024-11-02T23:52:22,573   Found link https://files.pythonhosted.org/packages/da/24/bc0ded99393b36c2a10169df8df556b1ffa4efbcb6cc88c6d0d1245a4490/pub_worm-0.2.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.2
2024-11-02T23:52:22,574   Found link https://files.pythonhosted.org/packages/33/30/9561212f51f111d9449c44d81a0be28a5cf0c3b0b074539017aaf0d3630c/pub_worm-0.2.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.3
2024-11-02T23:52:22,575   Found link https://files.pythonhosted.org/packages/6c/a1/cf793b17a67838982ea4ec3ad482fcb8a43a35ccf82d0ac3271755dd778c/pub_worm-0.2.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.4
2024-11-02T23:52:22,576   Found link https://files.pythonhosted.org/packages/43/11/631571482818adc400afa644ca4fb69ab1c3380d266d34f0112877514a49/pub_worm-0.2.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.5
2024-11-02T23:52:22,576   Found link https://files.pythonhosted.org/packages/7d/07/f0b969d2ecfe9daa5682c4565ed168d28aa1e45dff044a102bdb549c2cba/pub_worm-0.2.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.6
2024-11-02T23:52:22,577   Found link https://files.pythonhosted.org/packages/f5/e4/6c2a317ea14ff7acce17ad7087f4937e860cb48d28976812e19191e544e5/pub_worm-0.2.7.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.7
2024-11-02T23:52:22,577   Found link https://files.pythonhosted.org/packages/51/40/51943d1557acd97d0bd3c5e4ea9131e52649895cce775d41150299780858/pub_worm-0.2.8.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.8
2024-11-02T23:52:22,578   Found link https://files.pythonhosted.org/packages/96/9b/59b37b2341e80821c39f248138f73e554aa06b6ab437d44aca25ec803725/pub_worm-0.2.9.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.2.9
2024-11-02T23:52:22,578   Found link https://files.pythonhosted.org/packages/6a/ca/c5f05833b54c4ddb2b8d70e1c3e9631b195d28c7dc92cfbbd22d539d9f0e/pub_worm-0.3.0.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.0
2024-11-02T23:52:22,579   Found link https://files.pythonhosted.org/packages/85/d9/83a18281c7792db68fb6f9af515e5a50b5235c2d9816586d522060be97a7/pub_worm-0.3.1.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.1
2024-11-02T23:52:22,579   Found link https://files.pythonhosted.org/packages/d6/ea/750af1e220e8ea7ca825e574c5f8485c82cebc05826882f736e492d11d4a/pub_worm-0.3.2.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.2
2024-11-02T23:52:22,580   Found link https://files.pythonhosted.org/packages/8a/b9/75cdcce68e88b56c29aacadd8cc4229c649b54f1e2ec77582527997599ce/pub_worm-0.3.3.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.3
2024-11-02T23:52:22,580   Found link https://files.pythonhosted.org/packages/4e/3c/d7b15b0ca8d9ef436dd08e08a40d7b1e039c3a9e786a5e9dfa8101d02dd7/pub_worm-0.3.4.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.4
2024-11-02T23:52:22,581   Found link https://files.pythonhosted.org/packages/a0/0f/b34482f11648e05a16204f290f64ff41a798e896121355059e8b5f039c47/pub_worm-0.3.5.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.5
2024-11-02T23:52:22,582   Found link https://files.pythonhosted.org/packages/53/5c/99090a17cc43030da42e4951e37a6b81a1ea98a54f4b7e12db9e4a35c6f2/pub_worm-0.3.6.tar.gz (from https://pypi.org/simple/pub-worm/), version: 0.3.6
2024-11-02T23:52:22,583 Fetching project page and analyzing links: https://www.piwheels.org/simple/pub-worm/
2024-11-02T23:52:22,583 Getting page https://www.piwheels.org/simple/pub-worm/
2024-11-02T23:52:22,584 Found index url https://www.piwheels.org/simple/
2024-11-02T23:52:22,755 Fetched page https://www.piwheels.org/simple/pub-worm/ as text/html
2024-11-02T23:52:22,763   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.5-py3-none-any.whl#sha256=bad9dfb714fc15468d1ace297ca326dfdba5e55d1179672948eadd15ac39cc61 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,764   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.4-py3-none-any.whl#sha256=a3e5dd6c0f95799f1970ecd5fb6d76d08bb48ebd70bfce270c908e998d4310c9 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,764   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.3-py3-none-any.whl#sha256=da0d3ca0a782da9c6b12ec10ee6368664cb5c3c4fb652d55ac5ea0de063f95c0 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,765   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.2-py3-none-any.whl#sha256=8eb0af1a82d51754cf91c35469d2c0e3a47cee05f6570bd5c1fa918b9b457830 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,766   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.1-py3-none-any.whl#sha256=99d9dcd7ed7ebda453e569930ae75ceab3b9c7c8eeee77028acdd9c83809f0f3 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,766   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.3.0-py3-none-any.whl#sha256=25de0e60cf04e1f2361dafa06cd0ccc77faf62f68e246eb8e83301e354d9150a (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,767   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.9-py3-none-any.whl#sha256=0b5f756b21fa4c17fbed60801bd4dbc1fc1952ed843281a527c88d757d65485b (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,767   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.8-py3-none-any.whl#sha256=e38f0cefa270a92d5580a1df80252ec5a567937089f35923ee2f8fbaa4bab037 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,768   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.7-py3-none-any.whl#sha256=17c8216479e7796ddea333f1eccbc02c3362a728668da69bbf9e12b0239a9c8f (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,768   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.6-py3-none-any.whl#sha256=79f23813bcf27f437dd33b20d97761a1124ac1aa5aa80ff78557d4a6d78d0ff4 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,769   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.5-py3-none-any.whl#sha256=6372364213ad9038155851d20d7145b7fa44b8664abf2d718da4c2377fc3b56e (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,769   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.4-py3-none-any.whl#sha256=d426fb6e260eb1588f75b25281a6d726d740a9c88f34e8ffd0f0bbcd1e98acbc (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,770   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.3-py3-none-any.whl#sha256=08bbce548fac3ce388fa51fdcbf0a4b59a27180b5871a37d0bf5ced9c84e903a (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,770   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.2-py3-none-any.whl#sha256=1f5f09a3598f66e5a30431d4c93cd6b581049d7829a791820ecb783ddad91c19 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,771   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.1-py3-none-any.whl#sha256=2cd541418ccbf9158ab7e18b187c7d7bc297928fbb5f4817f84f67552fd20c2a (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,772   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.2.0-py3-none-any.whl#sha256=0fe4aa97fb602755d99717699395e7014f676d4ee4572930652a00f5b0407400 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,772   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.9-py3-none-any.whl#sha256=d36153a6672446b80a3ad4a128123f60f80f8f1444122936363fa80165d19f7a (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,773   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.8-py3-none-any.whl#sha256=ad3c0117baeaa8c04f86149fa0dd71f6ea65d60213da6d6b570d0157572afe2c (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,773   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.7-py3-none-any.whl#sha256=5b88eaacc4effbdf9cc173c4732a2ac60eac0a420ccac19ba626a2be72b7f12a (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,774   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.6-py3-none-any.whl#sha256=b18fb87705630077e0c3647f52c14b61e3b0ced91b1628a96bd5406c384f38ea (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,775   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.5-py3-none-any.whl#sha256=194f3e97c1023b9ba1e3ada69ff1de5c0883d9bf2e6c11d2b6173cf86f7d23ec (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,775   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.4-py3-none-any.whl#sha256=84de546e9b8e73c3cdbccb497a05d28c60537eda48d1b1fdb879be94e3fe3f27 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,775   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.3-py3-none-any.whl#sha256=c93d251f88dea0862a7a5878ea9d242ca2a3dfc38922c876268f91def0e576c1 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,776   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.2-py3-none-any.whl#sha256=414b783788f7426c998a30debf92f860ff421126db3b85415eedd560336e1cbb (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,776   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.1.1-py3-none-any.whl#sha256=dc4fcd02bf9ebdf2ea21f21ce51753823c46f53bdf7ad2cc731b344c105df198 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,777   Skipping link: No binaries permitted for pub-worm: https://www.piwheels.org/simple/pub-worm/pub_worm-0.0.1-py3-none-any.whl#sha256=64fc08fd5ed29b5a07f1941f7d146f1e984af13e0587f87fc5f8c4c194bd7330 (from https://www.piwheels.org/simple/pub-worm/)
2024-11-02T23:52:22,777 Skipping link: not a file: https://www.piwheels.org/simple/pub-worm/
2024-11-02T23:52:22,778 Skipping link: not a file: https://pypi.org/simple/pub-worm/
2024-11-02T23:52:22,798 Given no hashes to check 1 links for project 'pub-worm': discarding no candidates
2024-11-02T23:52:22,800 Collecting pub-worm==0.3.6
2024-11-02T23:52:22,803   Created temporary directory: /tmp/pip-unpack-0h5fghpu
2024-11-02T23:52:22,945   Downloading pub_worm-0.3.6.tar.gz (396 kB)
2024-11-02T23:52:23,168   Added pub-worm==0.3.6 from https://files.pythonhosted.org/packages/53/5c/99090a17cc43030da42e4951e37a6b81a1ea98a54f4b7e12db9e4a35c6f2/pub_worm-0.3.6.tar.gz to build tracker '/tmp/pip-build-tracker-gj7owozj'
2024-11-02T23:52:23,171   Running setup.py (path:/tmp/pip-wheel-ybr_b9qa/pub-worm_d92618ede4f74ca180386083459b52c5/setup.py) egg_info for package pub-worm
2024-11-02T23:52:23,172   Created temporary directory: /tmp/pip-pip-egg-info-ng2lvs8d
2024-11-02T23:52:23,172   Preparing metadata (setup.py): started
2024-11-02T23:52:23,173   Running command python setup.py egg_info
2024-11-02T23:52:24,253   running egg_info
2024-11-02T23:52:24,281   creating /tmp/pip-pip-egg-info-ng2lvs8d/pub_worm.egg-info
2024-11-02T23:52:24,283   writing /tmp/pip-pip-egg-info-ng2lvs8d/pub_worm.egg-info/PKG-INFO
2024-11-02T23:52:24,286   writing dependency_links to /tmp/pip-pip-egg-info-ng2lvs8d/pub_worm.egg-info/dependency_links.txt
2024-11-02T23:52:24,288   writing requirements to /tmp/pip-pip-egg-info-ng2lvs8d/pub_worm.egg-info/requires.txt
2024-11-02T23:52:24,289   writing top-level names to /tmp/pip-pip-egg-info-ng2lvs8d/pub_worm.egg-info/top_level.txt
2024-11-02T23:52:24,290   writing manifest file '/tmp/pip-pip-egg-info-ng2lvs8d/pub_worm.egg-info/SOURCES.txt'
2024-11-02T23:52:24,387   reading manifest file '/tmp/pip-pip-egg-info-ng2lvs8d/pub_worm.egg-info/SOURCES.txt'
2024-11-02T23:52:24,389   reading manifest template 'MANIFEST.in'
2024-11-02T23:52:24,391   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-11-02T23:52:24,391   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-11-02T23:52:24,392   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-11-02T23:52:24,395   writing manifest file '/tmp/pip-pip-egg-info-ng2lvs8d/pub_worm.egg-info/SOURCES.txt'
2024-11-02T23:52:24,504   Preparing metadata (setup.py): finished with status 'done'
2024-11-02T23:52:24,508   Source in /tmp/pip-wheel-ybr_b9qa/pub-worm_d92618ede4f74ca180386083459b52c5 has version 0.3.6, which satisfies requirement pub-worm==0.3.6 from https://files.pythonhosted.org/packages/53/5c/99090a17cc43030da42e4951e37a6b81a1ea98a54f4b7e12db9e4a35c6f2/pub_worm-0.3.6.tar.gz
2024-11-02T23:52:24,508   Removed pub-worm==0.3.6 from https://files.pythonhosted.org/packages/53/5c/99090a17cc43030da42e4951e37a6b81a1ea98a54f4b7e12db9e4a35c6f2/pub_worm-0.3.6.tar.gz from build tracker '/tmp/pip-build-tracker-gj7owozj'
2024-11-02T23:52:24,513 Created temporary directory: /tmp/pip-unpack-t00fk_zy
2024-11-02T23:52:24,514 Created temporary directory: /tmp/pip-unpack-rrdt95e6
2024-11-02T23:52:24,514 Building wheels for collected packages: pub-worm
2024-11-02T23:52:24,519   Created temporary directory: /tmp/pip-wheel-u0b6ojjn
2024-11-02T23:52:24,519   Building wheel for pub-worm (setup.py): started
2024-11-02T23:52:24,520   Destination directory: /tmp/pip-wheel-u0b6ojjn
2024-11-02T23:52:24,521   Running command python setup.py bdist_wheel
2024-11-02T23:52:25,537   running bdist_wheel
2024-11-02T23:52:25,669   running build
2024-11-02T23:52:25,669   running build_py
2024-11-02T23:52:25,700   creating build/lib/pub_worm
2024-11-02T23:52:25,702   copying pub_worm/__init__.py -> build/lib/pub_worm
2024-11-02T23:52:25,705   creating build/lib/tests
2024-11-02T23:52:25,706   copying tests/__init__.py -> build/lib/tests
2024-11-02T23:52:25,708   creating build/lib/pub_worm/wormbase
2024-11-02T23:52:25,709   copying pub_worm/wormbase/wormbase_util.py -> build/lib/pub_worm/wormbase
2024-11-02T23:52:25,712   copying pub_worm/wormbase/wormbase_api.py -> build/lib/pub_worm/wormbase
2024-11-02T23:52:25,714   copying pub_worm/wormbase/__init__.py -> build/lib/pub_worm/wormbase
2024-11-02T23:52:25,716   copying pub_worm/wormbase/to_csv_helpers.py -> build/lib/pub_worm/wormbase
2024-11-02T23:52:25,718   creating build/lib/pub_worm/orcid
2024-11-02T23:52:25,719   copying pub_worm/orcid/orcid_api.py -> build/lib/pub_worm/orcid
2024-11-02T23:52:25,721   copying pub_worm/orcid/__init__.py -> build/lib/pub_worm/orcid
2024-11-02T23:52:25,723   creating build/lib/pub_worm/biorxiv
2024-11-02T23:52:25,724   copying pub_worm/biorxiv/__init__.py -> build/lib/pub_worm/biorxiv
2024-11-02T23:52:25,726   copying pub_worm/biorxiv/biorxiv_api.py -> build/lib/pub_worm/biorxiv
2024-11-02T23:52:25,729   creating build/lib/pub_worm/impact_factor
2024-11-02T23:52:25,730   copying pub_worm/impact_factor/__init__.py -> build/lib/pub_worm/impact_factor
2024-11-02T23:52:25,732   copying pub_worm/impact_factor/impact_factor_lookup.py -> build/lib/pub_worm/impact_factor
2024-11-02T23:52:25,734   creating build/lib/pub_worm/ensembl
2024-11-02T23:52:25,735   copying pub_worm/ensembl/ensembl_api.py -> build/lib/pub_worm/ensembl
2024-11-02T23:52:25,737   copying pub_worm/ensembl/__init__.py -> build/lib/pub_worm/ensembl
2024-11-02T23:52:25,739   creating build/lib/pub_worm/ncbi
2024-11-02T23:52:25,740   copying pub_worm/ncbi/__init__.py -> build/lib/pub_worm/ncbi
2024-11-02T23:52:25,742   copying pub_worm/ncbi/entreze_api.py -> build/lib/pub_worm/ncbi
2024-11-02T23:52:25,745   creating build/lib/tests/wormbase
2024-11-02T23:52:25,747   copying tests/wormbase/test_wormbase_api.py -> build/lib/tests/wormbase
2024-11-02T23:52:25,749   copying tests/wormbase/__init__.py -> build/lib/tests/wormbase
2024-11-02T23:52:25,751   creating build/lib/tests/orcid
2024-11-02T23:52:25,752   copying tests/orcid/__init__.py -> build/lib/tests/orcid
2024-11-02T23:52:25,754   copying tests/orcid/test_orcid_api.py -> build/lib/tests/orcid
2024-11-02T23:52:25,756   creating build/lib/tests/impact_factor
2024-11-02T23:52:25,757   copying tests/impact_factor/test_get_impact_factor.py -> build/lib/tests/impact_factor
2024-11-02T23:52:25,759   copying tests/impact_factor/__init__.py -> build/lib/tests/impact_factor
2024-11-02T23:52:25,761   creating build/lib/tests/ncbi
2024-11-02T23:52:25,762   copying tests/ncbi/__init__.py -> build/lib/tests/ncbi
2024-11-02T23:52:25,764   copying tests/ncbi/test_entreze_api.py -> build/lib/tests/ncbi
2024-11-02T23:52:25,766   running egg_info
2024-11-02T23:52:25,794   writing pub_worm.egg-info/PKG-INFO
2024-11-02T23:52:25,797   writing dependency_links to pub_worm.egg-info/dependency_links.txt
2024-11-02T23:52:25,799   writing requirements to pub_worm.egg-info/requires.txt
2024-11-02T23:52:25,800   writing top-level names to pub_worm.egg-info/top_level.txt
2024-11-02T23:52:25,839   reading manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-11-02T23:52:25,842   reading manifest template 'MANIFEST.in'
2024-11-02T23:52:25,844   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esummary.json'
2024-11-02T23:52:25,844   warning: no files found matching 'pub_worm/ncbi/data/ncbi_esearch.json'
2024-11-02T23:52:25,845   warning: no files found matching 'pub_worm/ncbi/data/ncbi_efetch.json'
2024-11-02T23:52:25,849   writing manifest file 'pub_worm.egg-info/SOURCES.txt'
2024-11-02T23:52:25,851   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pub_worm.impact_factor.data' is absent from the `packages` configuration.
2024-11-02T23:52:25,851   !!

2024-11-02T23:52:25,853           ********************************************************************************
2024-11-02T23:52:25,853           ############################
2024-11-02T23:52:25,854           # Package would be ignored #
2024-11-02T23:52:25,854           ############################
2024-11-02T23:52:25,855           Python recognizes 'pub_worm.impact_factor.data' as an importable package[^1],
2024-11-02T23:52:25,856           but it is absent from setuptools' `packages` configuration.

2024-11-02T23:52:25,857           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-02T23:52:25,857           package, please make sure that 'pub_worm.impact_factor.data' is explicitly added
2024-11-02T23:52:25,858           to the `packages` configuration field.

2024-11-02T23:52:25,859           Alternatively, you can also rely on setuptools' discovery methods
2024-11-02T23:52:25,860           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-02T23:52:25,860           instead of `find_packages(...)`/`find:`).

2024-11-02T23:52:25,861           You can read more about "package discovery" on setuptools documentation page:

2024-11-02T23:52:25,863           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-02T23:52:25,864           If you don't want 'pub_worm.impact_factor.data' to be distributed and are
2024-11-02T23:52:25,864           already explicitly excluding 'pub_worm.impact_factor.data' via
2024-11-02T23:52:25,865           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-02T23:52:25,865           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-02T23:52:25,866           combination with a more fine grained `package-data` configuration.

2024-11-02T23:52:25,867           You can read more about "package data files" on setuptools documentation page:

2024-11-02T23:52:25,868           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-02T23:52:25,870           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-02T23:52:25,870                 even if it does not contain any `.py` files.
2024-11-02T23:52:25,871                 On the other hand, currently there is no concept of package data
2024-11-02T23:52:25,871                 directory, all directories are treated like packages.
2024-11-02T23:52:25,872           ********************************************************************************

2024-11-02T23:52:25,873   !!
2024-11-02T23:52:25,873     check.warn(importable)
2024-11-02T23:52:25,874   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:220: _Warning: Package 'pub_worm.wormbase.data' is absent from the `packages` configuration.
2024-11-02T23:52:25,874   !!

2024-11-02T23:52:25,875           ********************************************************************************
2024-11-02T23:52:25,876           ############################
2024-11-02T23:52:25,876           # Package would be ignored #
2024-11-02T23:52:25,877           ############################
2024-11-02T23:52:25,877           Python recognizes 'pub_worm.wormbase.data' as an importable package[^1],
2024-11-02T23:52:25,877           but it is absent from setuptools' `packages` configuration.

2024-11-02T23:52:25,878           This leads to an ambiguous overall configuration. If you want to distribute this
2024-11-02T23:52:25,879           package, please make sure that 'pub_worm.wormbase.data' is explicitly added
2024-11-02T23:52:25,879           to the `packages` configuration field.

2024-11-02T23:52:25,880           Alternatively, you can also rely on setuptools' discovery methods
2024-11-02T23:52:25,881           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-11-02T23:52:25,881           instead of `find_packages(...)`/`find:`).

2024-11-02T23:52:25,884           You can read more about "package discovery" on setuptools documentation page:

2024-11-02T23:52:25,891           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-11-02T23:52:25,898           If you don't want 'pub_worm.wormbase.data' to be distributed and are
2024-11-02T23:52:25,899           already explicitly excluding 'pub_worm.wormbase.data' via
2024-11-02T23:52:25,899           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-11-02T23:52:25,900           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-11-02T23:52:25,900           combination with a more fine grained `package-data` configuration.

2024-11-02T23:52:25,901           You can read more about "package data files" on setuptools documentation page:

2024-11-02T23:52:25,902           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-11-02T23:52:25,904           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-11-02T23:52:25,904                 even if it does not contain any `.py` files.
2024-11-02T23:52:25,905                 On the other hand, currently there is no concept of package data
2024-11-02T23:52:25,905                 directory, all directories are treated like packages.
2024-11-02T23:52:25,906           ********************************************************************************

2024-11-02T23:52:25,907   !!
2024-11-02T23:52:25,908     check.warn(importable)
2024-11-02T23:52:25,908   creating build/lib/pub_worm/wormbase/data
2024-11-02T23:52:25,909   copying pub_worm/wormbase/data/wormbase_field_gene.json -> build/lib/pub_worm/wormbase/data
2024-11-02T23:52:25,909   copying pub_worm/wormbase/data/wormbase_field_paper.json -> build/lib/pub_worm/wormbase/data
2024-11-02T23:52:25,910   copying pub_worm/wormbase/data/wormbase_widget_gene.json -> build/lib/pub_worm/wormbase/data
2024-11-02T23:52:25,910   creating build/lib/pub_worm/impact_factor/data
2024-11-02T23:52:25,911   copying pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/lib/pub_worm/impact_factor/data
2024-11-02T23:52:25,936   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2024-11-02T23:52:25,937   !!

2024-11-02T23:52:25,938           ********************************************************************************
2024-11-02T23:52:25,939           Please avoid running ``setup.py`` directly.
2024-11-02T23:52:25,940           Instead, use pypa/build, pypa/installer or other
2024-11-02T23:52:25,940           standards-based tools.

2024-11-02T23:52:25,941           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2024-11-02T23:52:25,942           ********************************************************************************

2024-11-02T23:52:25,942   !!
2024-11-02T23:52:25,943     self.initialize_options()
2024-11-02T23:52:25,964   installing to build/bdist.linux-armv7l/wheel
2024-11-02T23:52:25,965   running install
2024-11-02T23:52:25,989   running install_lib
2024-11-02T23:52:26,016   creating build/bdist.linux-armv7l/wheel
2024-11-02T23:52:26,018   creating build/bdist.linux-armv7l/wheel/pub_worm
2024-11-02T23:52:26,020   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase
2024-11-02T23:52:26,021   copying build/lib/pub_worm/wormbase/wormbase_util.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-11-02T23:52:26,024   copying build/lib/pub_worm/wormbase/wormbase_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-11-02T23:52:26,026   copying build/lib/pub_worm/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-11-02T23:52:26,028   copying build/lib/pub_worm/wormbase/to_csv_helpers.py -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase
2024-11-02T23:52:26,030   creating build/bdist.linux-armv7l/wheel/pub_worm/wormbase/data
2024-11-02T23:52:26,031   copying build/lib/pub_worm/wormbase/data/wormbase_field_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-11-02T23:52:26,033   copying build/lib/pub_worm/wormbase/data/wormbase_field_paper.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-11-02T23:52:26,035   copying build/lib/pub_worm/wormbase/data/wormbase_widget_gene.json -> build/bdist.linux-armv7l/wheel/./pub_worm/wormbase/data
2024-11-02T23:52:26,037   copying build/lib/pub_worm/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm
2024-11-02T23:52:26,039   creating build/bdist.linux-armv7l/wheel/pub_worm/orcid
2024-11-02T23:52:26,040   copying build/lib/pub_worm/orcid/orcid_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid
2024-11-02T23:52:26,042   copying build/lib/pub_worm/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/orcid
2024-11-02T23:52:26,044   creating build/bdist.linux-armv7l/wheel/pub_worm/biorxiv
2024-11-02T23:52:26,045   copying build/lib/pub_worm/biorxiv/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/biorxiv
2024-11-02T23:52:26,047   copying build/lib/pub_worm/biorxiv/biorxiv_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/biorxiv
2024-11-02T23:52:26,050   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor
2024-11-02T23:52:26,051   copying build/lib/pub_worm/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor
2024-11-02T23:52:26,053   copying build/lib/pub_worm/impact_factor/impact_factor_lookup.py -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor
2024-11-02T23:52:26,055   creating build/bdist.linux-armv7l/wheel/pub_worm/impact_factor/data
2024-11-02T23:52:26,056   copying build/lib/pub_worm/impact_factor/data/2022_JCR_IF.csv -> build/bdist.linux-armv7l/wheel/./pub_worm/impact_factor/data
2024-11-02T23:52:26,082   creating build/bdist.linux-armv7l/wheel/pub_worm/ensembl
2024-11-02T23:52:26,083   copying build/lib/pub_worm/ensembl/ensembl_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl
2024-11-02T23:52:26,085   copying build/lib/pub_worm/ensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ensembl
2024-11-02T23:52:26,087   creating build/bdist.linux-armv7l/wheel/pub_worm/ncbi
2024-11-02T23:52:26,088   copying build/lib/pub_worm/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi
2024-11-02T23:52:26,090   copying build/lib/pub_worm/ncbi/entreze_api.py -> build/bdist.linux-armv7l/wheel/./pub_worm/ncbi
2024-11-02T23:52:26,094   creating build/bdist.linux-armv7l/wheel/tests
2024-11-02T23:52:26,095   creating build/bdist.linux-armv7l/wheel/tests/wormbase
2024-11-02T23:52:26,097   copying build/lib/tests/wormbase/test_wormbase_api.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase
2024-11-02T23:52:26,099   copying build/lib/tests/wormbase/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/wormbase
2024-11-02T23:52:26,100   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests
2024-11-02T23:52:26,102   creating build/bdist.linux-armv7l/wheel/tests/orcid
2024-11-02T23:52:26,104   copying build/lib/tests/orcid/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/orcid
2024-11-02T23:52:26,105   copying build/lib/tests/orcid/test_orcid_api.py -> build/bdist.linux-armv7l/wheel/./tests/orcid
2024-11-02T23:52:26,108   creating build/bdist.linux-armv7l/wheel/tests/impact_factor
2024-11-02T23:52:26,109   copying build/lib/tests/impact_factor/test_get_impact_factor.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor
2024-11-02T23:52:26,111   copying build/lib/tests/impact_factor/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/impact_factor
2024-11-02T23:52:26,113   creating build/bdist.linux-armv7l/wheel/tests/ncbi
2024-11-02T23:52:26,114   copying build/lib/tests/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi
2024-11-02T23:52:26,115   copying build/lib/tests/ncbi/test_entreze_api.py -> build/bdist.linux-armv7l/wheel/./tests/ncbi
2024-11-02T23:52:26,117   running install_egg_info
2024-11-02T23:52:26,151   Copying pub_worm.egg-info to build/bdist.linux-armv7l/wheel/./pub_worm-0.3.6-py3.11.egg-info
2024-11-02T23:52:26,162   running install_scripts
2024-11-02T23:52:26,175   creating build/bdist.linux-armv7l/wheel/pub_worm-0.3.6.dist-info/WHEEL
2024-11-02T23:52:26,177   creating '/tmp/pip-wheel-u0b6ojjn/pub_worm-0.3.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-11-02T23:52:26,179   adding 'pub_worm/__init__.py'
2024-11-02T23:52:26,181   adding 'pub_worm/biorxiv/__init__.py'
2024-11-02T23:52:26,182   adding 'pub_worm/biorxiv/biorxiv_api.py'
2024-11-02T23:52:26,184   adding 'pub_worm/ensembl/__init__.py'
2024-11-02T23:52:26,186   adding 'pub_worm/ensembl/ensembl_api.py'
2024-11-02T23:52:26,187   adding 'pub_worm/impact_factor/__init__.py'
2024-11-02T23:52:26,189   adding 'pub_worm/impact_factor/impact_factor_lookup.py'
2024-11-02T23:52:26,353   adding 'pub_worm/impact_factor/data/2022_JCR_IF.csv'
2024-11-02T23:52:26,364   adding 'pub_worm/ncbi/__init__.py'
2024-11-02T23:52:26,366   adding 'pub_worm/ncbi/entreze_api.py'
2024-11-02T23:52:26,368   adding 'pub_worm/orcid/__init__.py'
2024-11-02T23:52:26,369   adding 'pub_worm/orcid/orcid_api.py'
2024-11-02T23:52:26,371   adding 'pub_worm/wormbase/__init__.py'
2024-11-02T23:52:26,373   adding 'pub_worm/wormbase/to_csv_helpers.py'
2024-11-02T23:52:26,374   adding 'pub_worm/wormbase/wormbase_api.py'
2024-11-02T23:52:26,376   adding 'pub_worm/wormbase/wormbase_util.py'
2024-11-02T23:52:26,378   adding 'pub_worm/wormbase/data/wormbase_field_gene.json'
2024-11-02T23:52:26,379   adding 'pub_worm/wormbase/data/wormbase_field_paper.json'
2024-11-02T23:52:26,380   adding 'pub_worm/wormbase/data/wormbase_widget_gene.json'
2024-11-02T23:52:26,383   adding 'tests/__init__.py'
2024-11-02T23:52:26,385   adding 'tests/impact_factor/__init__.py'
2024-11-02T23:52:26,386   adding 'tests/impact_factor/test_get_impact_factor.py'
2024-11-02T23:52:26,387   adding 'tests/ncbi/__init__.py'
2024-11-02T23:52:26,389   adding 'tests/ncbi/test_entreze_api.py'
2024-11-02T23:52:26,390   adding 'tests/orcid/__init__.py'
2024-11-02T23:52:26,392   adding 'tests/orcid/test_orcid_api.py'
2024-11-02T23:52:26,393   adding 'tests/wormbase/__init__.py'
2024-11-02T23:52:26,395   adding 'tests/wormbase/test_wormbase_api.py'
2024-11-02T23:52:26,396   adding 'pub_worm-0.3.6.dist-info/METADATA'
2024-11-02T23:52:26,397   adding 'pub_worm-0.3.6.dist-info/WHEEL'
2024-11-02T23:52:26,398   adding 'pub_worm-0.3.6.dist-info/top_level.txt'
2024-11-02T23:52:26,399   adding 'pub_worm-0.3.6.dist-info/RECORD'
2024-11-02T23:52:26,406   removing build/bdist.linux-armv7l/wheel
2024-11-02T23:52:26,530   Building wheel for pub-worm (setup.py): finished with status 'done'
2024-11-02T23:52:26,537   Created wheel for pub-worm: filename=pub_worm-0.3.6-py3-none-any.whl size=402664 sha256=0a013fec740c139222c2c023f545a7331a37ff1dc993e51f7eaa9dd46e2a0157
2024-11-02T23:52:26,538   Stored in directory: /tmp/pip-ephem-wheel-cache-8kg57v6j/wheels/0d/89/c2/1edd4f31201f0bc7a1658bcaf3a4c705aa2e025b551c20c151
2024-11-02T23:52:26,548 Successfully built pub-worm
2024-11-02T23:52:26,566 Removed build tracker: '/tmp/pip-build-tracker-gj7owozj'