2024-11-03T23:07:07,238 Disabling truststore because Python version isn't 3.10+ 2024-11-03T23:07:07,716 Created temporary directory: /tmp/pip-build-tracker-ke9wz6mp 2024-11-03T23:07:07,717 Initialized build tracking at /tmp/pip-build-tracker-ke9wz6mp 2024-11-03T23:07:07,717 Created build tracker: /tmp/pip-build-tracker-ke9wz6mp 2024-11-03T23:07:07,717 Entered build tracker: /tmp/pip-build-tracker-ke9wz6mp 2024-11-03T23:07:07,718 Created temporary directory: /tmp/pip-wheel-s8hvixo0 2024-11-03T23:07:07,723 Created temporary directory: /tmp/pip-ephem-wheel-cache-y2jq1ri6 2024-11-03T23:07:07,767 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-03T23:07:07,770 2 location(s) to search for versions of scdiffusion: 2024-11-03T23:07:07,770 * https://pypi.org/simple/scdiffusion/ 2024-11-03T23:07:07,770 * https://www.piwheels.org/simple/scdiffusion/ 2024-11-03T23:07:07,770 Fetching project page and analyzing links: https://pypi.org/simple/scdiffusion/ 2024-11-03T23:07:07,771 Getting page https://pypi.org/simple/scdiffusion/ 2024-11-03T23:07:07,772 Found index url https://pypi.org/simple/ 2024-11-03T23:07:07,793 Fetched page https://pypi.org/simple/scdiffusion/ as application/vnd.pypi.simple.v1+json 2024-11-03T23:07:07,794 Skipping link: No binaries permitted for scdiffusion: https://files.pythonhosted.org/packages/7f/6c/ccd731d9b4d324afeaa577b46d82de9ab08c0eb9691f1f87e872b3187177/scDiffusion-0.3-py3-none-any.whl (from https://pypi.org/simple/scdiffusion/) (requires-python:<3.11,>=3.9) 2024-11-03T23:07:07,795 Found link https://files.pythonhosted.org/packages/12/1c/d26eaac8cf9c3691a402013574d341dffa8d1f806b454e7a1057b51d696a/scDiffusion-0.3.tar.gz (from https://pypi.org/simple/scdiffusion/) (requires-python:<3.11,>=3.9), version: 0.3 2024-11-03T23:07:07,795 Skipping link: No binaries permitted for scdiffusion: https://files.pythonhosted.org/packages/74/d4/7d0d3ebcdec858a6c5af76953a6f155f8bdda27f01a200b6a1aeef1f7071/scDiffusion-0.3.1-py3-none-any.whl (from https://pypi.org/simple/scdiffusion/) (requires-python:<3.11,>=3.9) 2024-11-03T23:07:07,796 Found link https://files.pythonhosted.org/packages/65/3e/3f76a28e7b113a3b60467c8554360d0209b9ef6b5367f3f71b4043b10314/scDiffusion-0.3.1.tar.gz (from https://pypi.org/simple/scdiffusion/) (requires-python:<3.11,>=3.9), version: 0.3.1 2024-11-03T23:07:07,796 Fetching project page and analyzing links: https://www.piwheels.org/simple/scdiffusion/ 2024-11-03T23:07:07,797 Getting page https://www.piwheels.org/simple/scdiffusion/ 2024-11-03T23:07:07,798 Found index url https://www.piwheels.org/simple/ 2024-11-03T23:07:07,836 Fetched page https://www.piwheels.org/simple/scdiffusion/ as text/html 2024-11-03T23:07:07,837 Skipping link: not a file: https://www.piwheels.org/simple/scdiffusion/ 2024-11-03T23:07:07,837 Skipping link: not a file: https://pypi.org/simple/scdiffusion/ 2024-11-03T23:07:07,853 Given no hashes to check 1 links for project 'scdiffusion': discarding no candidates 2024-11-03T23:07:07,855 Collecting scdiffusion==0.3 2024-11-03T23:07:07,857 Created temporary directory: /tmp/pip-unpack-h8rrc5s4 2024-11-03T23:07:07,946 Downloading scDiffusion-0.3.tar.gz (35 kB) 2024-11-03T23:07:08,048 Added scdiffusion==0.3 from https://files.pythonhosted.org/packages/12/1c/d26eaac8cf9c3691a402013574d341dffa8d1f806b454e7a1057b51d696a/scDiffusion-0.3.tar.gz to build tracker '/tmp/pip-build-tracker-ke9wz6mp' 2024-11-03T23:07:08,050 Running setup.py (path:/tmp/pip-wheel-s8hvixo0/scdiffusion_84b72aa715e3460bbc836fd4502b5f73/setup.py) egg_info for package scdiffusion 2024-11-03T23:07:08,050 Created temporary directory: /tmp/pip-pip-egg-info-vpczwv9i 2024-11-03T23:07:08,051 Preparing metadata (setup.py): started 2024-11-03T23:07:08,052 Running command python setup.py egg_info 2024-11-03T23:07:09,128 running egg_info 2024-11-03T23:07:09,159 creating /tmp/pip-pip-egg-info-vpczwv9i/scDiffusion.egg-info 2024-11-03T23:07:09,160 writing /tmp/pip-pip-egg-info-vpczwv9i/scDiffusion.egg-info/PKG-INFO 2024-11-03T23:07:09,164 writing dependency_links to /tmp/pip-pip-egg-info-vpczwv9i/scDiffusion.egg-info/dependency_links.txt 2024-11-03T23:07:09,166 writing requirements to /tmp/pip-pip-egg-info-vpczwv9i/scDiffusion.egg-info/requires.txt 2024-11-03T23:07:09,167 writing top-level names to /tmp/pip-pip-egg-info-vpczwv9i/scDiffusion.egg-info/top_level.txt 2024-11-03T23:07:09,169 writing manifest file '/tmp/pip-pip-egg-info-vpczwv9i/scDiffusion.egg-info/SOURCES.txt' 2024-11-03T23:07:09,260 reading manifest file '/tmp/pip-pip-egg-info-vpczwv9i/scDiffusion.egg-info/SOURCES.txt' 2024-11-03T23:07:09,265 writing manifest file '/tmp/pip-pip-egg-info-vpczwv9i/scDiffusion.egg-info/SOURCES.txt' 2024-11-03T23:07:09,353 Preparing metadata (setup.py): finished with status 'done' 2024-11-03T23:07:09,359 Source in /tmp/pip-wheel-s8hvixo0/scdiffusion_84b72aa715e3460bbc836fd4502b5f73 has version 0.3, which satisfies requirement scdiffusion==0.3 from https://files.pythonhosted.org/packages/12/1c/d26eaac8cf9c3691a402013574d341dffa8d1f806b454e7a1057b51d696a/scDiffusion-0.3.tar.gz 2024-11-03T23:07:09,359 Removed scdiffusion==0.3 from https://files.pythonhosted.org/packages/12/1c/d26eaac8cf9c3691a402013574d341dffa8d1f806b454e7a1057b51d696a/scDiffusion-0.3.tar.gz from build tracker '/tmp/pip-build-tracker-ke9wz6mp' 2024-11-03T23:07:09,371 Created temporary directory: /tmp/pip-unpack-98ri3ik5 2024-11-03T23:07:09,372 Created temporary directory: /tmp/pip-unpack-bzynlnb_ 2024-11-03T23:07:09,372 Building wheels for collected packages: scdiffusion 2024-11-03T23:07:09,376 Created temporary directory: /tmp/pip-wheel-vldz7iga 2024-11-03T23:07:09,377 Building wheel for scdiffusion (setup.py): started 2024-11-03T23:07:09,378 Destination directory: /tmp/pip-wheel-vldz7iga 2024-11-03T23:07:09,378 Running command python setup.py bdist_wheel 2024-11-03T23:07:10,415 running bdist_wheel 2024-11-03T23:07:10,548 running build 2024-11-03T23:07:10,548 running build_py 2024-11-03T23:07:10,578 creating build/lib/scDiffusion 2024-11-03T23:07:10,580 copying scDiffusion/__init__.py -> build/lib/scDiffusion 2024-11-03T23:07:10,583 creating build/lib/scDiffusion/sc_analysis 2024-11-03T23:07:10,584 copying scDiffusion/sc_analysis/__init__.py -> build/lib/scDiffusion/sc_analysis 2024-11-03T23:07:10,585 copying scDiffusion/sc_analysis/annotation.py -> build/lib/scDiffusion/sc_analysis 2024-11-03T23:07:10,588 copying scDiffusion/sc_analysis/preprocess.py -> build/lib/scDiffusion/sc_analysis 2024-11-03T23:07:10,590 copying scDiffusion/sc_analysis/clustering.py -> build/lib/scDiffusion/sc_analysis 2024-11-03T23:07:10,592 copying scDiffusion/sc_analysis/trajectory.py -> build/lib/scDiffusion/sc_analysis 2024-11-03T23:07:10,594 copying scDiffusion/sc_analysis/trajectory_plot.py -> build/lib/scDiffusion/sc_analysis 2024-11-03T23:07:10,597 creating build/lib/scDiffusion/sc_integration 2024-11-03T23:07:10,598 copying scDiffusion/sc_integration/Harmony.py -> build/lib/scDiffusion/sc_integration 2024-11-03T23:07:10,601 copying scDiffusion/sc_integration/integration_DIF.py -> build/lib/scDiffusion/sc_integration 2024-11-03T23:07:10,603 copying scDiffusion/sc_integration/__init__.py -> build/lib/scDiffusion/sc_integration 2024-11-03T23:07:10,605 copying scDiffusion/sc_integration/integration_graph.py -> build/lib/scDiffusion/sc_integration 2024-11-03T23:07:10,608 creating build/lib/scDiffusion/diffusion 2024-11-03T23:07:10,609 copying scDiffusion/diffusion/__init__.py -> build/lib/scDiffusion/diffusion 2024-11-03T23:07:10,611 copying scDiffusion/diffusion/feature_encoder.py -> build/lib/scDiffusion/diffusion 2024-11-03T23:07:10,613 copying scDiffusion/diffusion/graph_DIF.py -> build/lib/scDiffusion/diffusion 2024-11-03T23:07:10,616 copying scDiffusion/diffusion/gnd.py -> build/lib/scDiffusion/diffusion 2024-11-03T23:07:10,619 creating build/lib/scDiffusion/sc_graph 2024-11-03T23:07:10,620 copying scDiffusion/sc_graph/__init__.py -> build/lib/scDiffusion/sc_graph 2024-11-03T23:07:10,622 copying scDiffusion/sc_graph/build_graph.py -> build/lib/scDiffusion/sc_graph 2024-11-03T23:07:10,624 copying scDiffusion/sc_graph/graph_modularity.py -> build/lib/scDiffusion/sc_graph 2024-11-03T23:07:10,626 copying scDiffusion/sc_graph/graph_attention.py -> build/lib/scDiffusion/sc_graph 2024-11-03T23:07:10,629 creating build/lib/scDiffusion/utils 2024-11-03T23:07:10,630 copying scDiffusion/utils/__init__.py -> build/lib/scDiffusion/utils 2024-11-03T23:07:10,632 copying scDiffusion/utils/utility_fn.py -> build/lib/scDiffusion/utils 2024-11-03T23:07:10,634 copying scDiffusion/utils/umap_fn.py -> build/lib/scDiffusion/utils 2024-11-03T23:07:10,636 copying scDiffusion/utils/info_log.py -> build/lib/scDiffusion/utils 2024-11-03T23:07:10,672 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-03T23:07:10,672 !! 2024-11-03T23:07:10,672 ******************************************************************************** 2024-11-03T23:07:10,672 Please avoid running ``setup.py`` directly. 2024-11-03T23:07:10,673 Instead, use pypa/build, pypa/installer or other 2024-11-03T23:07:10,673 standards-based tools. 2024-11-03T23:07:10,673 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-03T23:07:10,673 ******************************************************************************** 2024-11-03T23:07:10,673 !! 2024-11-03T23:07:10,673 self.initialize_options() 2024-11-03T23:07:10,698 installing to build/bdist.linux-armv7l/wheel 2024-11-03T23:07:10,698 running install 2024-11-03T23:07:10,724 running install_lib 2024-11-03T23:07:10,750 creating build/bdist.linux-armv7l/wheel 2024-11-03T23:07:10,753 creating build/bdist.linux-armv7l/wheel/scDiffusion 2024-11-03T23:07:10,754 copying build/lib/scDiffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./scDiffusion 2024-11-03T23:07:10,756 creating build/bdist.linux-armv7l/wheel/scDiffusion/sc_analysis 2024-11-03T23:07:10,757 copying build/lib/scDiffusion/sc_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_analysis 2024-11-03T23:07:10,759 copying build/lib/scDiffusion/sc_analysis/annotation.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_analysis 2024-11-03T23:07:10,761 copying build/lib/scDiffusion/sc_analysis/preprocess.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_analysis 2024-11-03T23:07:10,763 copying build/lib/scDiffusion/sc_analysis/clustering.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_analysis 2024-11-03T23:07:10,765 copying build/lib/scDiffusion/sc_analysis/trajectory.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_analysis 2024-11-03T23:07:10,767 copying build/lib/scDiffusion/sc_analysis/trajectory_plot.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_analysis 2024-11-03T23:07:10,770 creating build/bdist.linux-armv7l/wheel/scDiffusion/sc_integration 2024-11-03T23:07:10,771 copying build/lib/scDiffusion/sc_integration/Harmony.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_integration 2024-11-03T23:07:10,774 copying build/lib/scDiffusion/sc_integration/integration_DIF.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_integration 2024-11-03T23:07:10,776 copying build/lib/scDiffusion/sc_integration/__init__.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_integration 2024-11-03T23:07:10,778 copying build/lib/scDiffusion/sc_integration/integration_graph.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_integration 2024-11-03T23:07:10,782 creating build/bdist.linux-armv7l/wheel/scDiffusion/diffusion 2024-11-03T23:07:10,783 copying build/lib/scDiffusion/diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/diffusion 2024-11-03T23:07:10,785 copying build/lib/scDiffusion/diffusion/feature_encoder.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/diffusion 2024-11-03T23:07:10,787 copying build/lib/scDiffusion/diffusion/graph_DIF.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/diffusion 2024-11-03T23:07:10,789 copying build/lib/scDiffusion/diffusion/gnd.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/diffusion 2024-11-03T23:07:10,793 creating build/bdist.linux-armv7l/wheel/scDiffusion/sc_graph 2024-11-03T23:07:10,794 copying build/lib/scDiffusion/sc_graph/__init__.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_graph 2024-11-03T23:07:10,796 copying build/lib/scDiffusion/sc_graph/build_graph.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_graph 2024-11-03T23:07:10,798 copying build/lib/scDiffusion/sc_graph/graph_modularity.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_graph 2024-11-03T23:07:10,800 copying build/lib/scDiffusion/sc_graph/graph_attention.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_graph 2024-11-03T23:07:10,803 creating build/bdist.linux-armv7l/wheel/scDiffusion/utils 2024-11-03T23:07:10,804 copying build/lib/scDiffusion/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/utils 2024-11-03T23:07:10,806 copying build/lib/scDiffusion/utils/utility_fn.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/utils 2024-11-03T23:07:10,808 copying build/lib/scDiffusion/utils/umap_fn.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/utils 2024-11-03T23:07:10,810 copying build/lib/scDiffusion/utils/info_log.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/utils 2024-11-03T23:07:10,811 running install_egg_info 2024-11-03T23:07:10,843 running egg_info 2024-11-03T23:07:10,869 writing scDiffusion.egg-info/PKG-INFO 2024-11-03T23:07:10,873 writing dependency_links to scDiffusion.egg-info/dependency_links.txt 2024-11-03T23:07:10,875 writing requirements to scDiffusion.egg-info/requires.txt 2024-11-03T23:07:10,876 writing top-level names to scDiffusion.egg-info/top_level.txt 2024-11-03T23:07:10,911 reading manifest file 'scDiffusion.egg-info/SOURCES.txt' 2024-11-03T23:07:10,919 writing manifest file 'scDiffusion.egg-info/SOURCES.txt' 2024-11-03T23:07:10,920 Copying scDiffusion.egg-info to build/bdist.linux-armv7l/wheel/./scDiffusion-0.3-py3.9.egg-info 2024-11-03T23:07:10,929 running install_scripts 2024-11-03T23:07:10,948 creating build/bdist.linux-armv7l/wheel/scDiffusion-0.3.dist-info/WHEEL 2024-11-03T23:07:10,951 creating '/tmp/pip-wheel-vldz7iga/scDiffusion-0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-03T23:07:10,953 adding 'scDiffusion/__init__.py' 2024-11-03T23:07:10,955 adding 'scDiffusion/diffusion/__init__.py' 2024-11-03T23:07:10,956 adding 'scDiffusion/diffusion/feature_encoder.py' 2024-11-03T23:07:10,960 adding 'scDiffusion/diffusion/gnd.py' 2024-11-03T23:07:10,962 adding 'scDiffusion/diffusion/graph_DIF.py' 2024-11-03T23:07:10,964 adding 'scDiffusion/sc_analysis/__init__.py' 2024-11-03T23:07:10,966 adding 'scDiffusion/sc_analysis/annotation.py' 2024-11-03T23:07:10,967 adding 'scDiffusion/sc_analysis/clustering.py' 2024-11-03T23:07:10,968 adding 'scDiffusion/sc_analysis/preprocess.py' 2024-11-03T23:07:10,970 adding 'scDiffusion/sc_analysis/trajectory.py' 2024-11-03T23:07:10,972 adding 'scDiffusion/sc_analysis/trajectory_plot.py' 2024-11-03T23:07:10,974 adding 'scDiffusion/sc_graph/__init__.py' 2024-11-03T23:07:10,975 adding 'scDiffusion/sc_graph/build_graph.py' 2024-11-03T23:07:10,977 adding 'scDiffusion/sc_graph/graph_attention.py' 2024-11-03T23:07:10,978 adding 'scDiffusion/sc_graph/graph_modularity.py' 2024-11-03T23:07:10,981 adding 'scDiffusion/sc_integration/Harmony.py' 2024-11-03T23:07:10,983 adding 'scDiffusion/sc_integration/__init__.py' 2024-11-03T23:07:10,985 adding 'scDiffusion/sc_integration/integration_DIF.py' 2024-11-03T23:07:10,987 adding 'scDiffusion/sc_integration/integration_graph.py' 2024-11-03T23:07:10,989 adding 'scDiffusion/utils/__init__.py' 2024-11-03T23:07:10,991 adding 'scDiffusion/utils/info_log.py' 2024-11-03T23:07:10,992 adding 'scDiffusion/utils/umap_fn.py' 2024-11-03T23:07:10,994 adding 'scDiffusion/utils/utility_fn.py' 2024-11-03T23:07:10,996 adding 'scDiffusion-0.3.dist-info/METADATA' 2024-11-03T23:07:10,997 adding 'scDiffusion-0.3.dist-info/WHEEL' 2024-11-03T23:07:10,998 adding 'scDiffusion-0.3.dist-info/top_level.txt' 2024-11-03T23:07:10,999 adding 'scDiffusion-0.3.dist-info/RECORD' 2024-11-03T23:07:11,001 removing build/bdist.linux-armv7l/wheel 2024-11-03T23:07:11,100 Building wheel for scdiffusion (setup.py): finished with status 'done' 2024-11-03T23:07:11,103 Created wheel for scdiffusion: filename=scDiffusion-0.3-py3-none-any.whl size=40875 sha256=0036eba7801b4720b0c242e16a9f8dd0e118e465418cf91e4084e0a27e389cad 2024-11-03T23:07:11,104 Stored in directory: /tmp/pip-ephem-wheel-cache-y2jq1ri6/wheels/d3/a0/24/a911d534f6aeba72c44231358eb28061c58fa1f351e64f1bb1 2024-11-03T23:07:11,115 Successfully built scdiffusion 2024-11-03T23:07:11,120 Removed build tracker: '/tmp/pip-build-tracker-ke9wz6mp'