2024-11-04T01:06:15,723 Disabling truststore because Python version isn't 3.10+ 2024-11-04T01:06:16,193 Created temporary directory: /tmp/pip-build-tracker-oh9qazzk 2024-11-04T01:06:16,194 Initialized build tracking at /tmp/pip-build-tracker-oh9qazzk 2024-11-04T01:06:16,194 Created build tracker: /tmp/pip-build-tracker-oh9qazzk 2024-11-04T01:06:16,195 Entered build tracker: /tmp/pip-build-tracker-oh9qazzk 2024-11-04T01:06:16,195 Created temporary directory: /tmp/pip-wheel-kb04a0h4 2024-11-04T01:06:16,201 Created temporary directory: /tmp/pip-ephem-wheel-cache-ikn3n449 2024-11-04T01:06:16,242 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-11-04T01:06:16,245 2 location(s) to search for versions of scdiffusion: 2024-11-04T01:06:16,245 * https://pypi.org/simple/scdiffusion/ 2024-11-04T01:06:16,245 * https://www.piwheels.org/simple/scdiffusion/ 2024-11-04T01:06:16,246 Fetching project page and analyzing links: https://pypi.org/simple/scdiffusion/ 2024-11-04T01:06:16,246 Getting page https://pypi.org/simple/scdiffusion/ 2024-11-04T01:06:16,248 Found index url https://pypi.org/simple/ 2024-11-04T01:06:16,268 Fetched page https://pypi.org/simple/scdiffusion/ as application/vnd.pypi.simple.v1+json 2024-11-04T01:06:16,270 Skipping link: No binaries permitted for scdiffusion: https://files.pythonhosted.org/packages/7f/6c/ccd731d9b4d324afeaa577b46d82de9ab08c0eb9691f1f87e872b3187177/scDiffusion-0.3-py3-none-any.whl (from https://pypi.org/simple/scdiffusion/) (requires-python:<3.11,>=3.9) 2024-11-04T01:06:16,270 Found link https://files.pythonhosted.org/packages/12/1c/d26eaac8cf9c3691a402013574d341dffa8d1f806b454e7a1057b51d696a/scDiffusion-0.3.tar.gz (from https://pypi.org/simple/scdiffusion/) (requires-python:<3.11,>=3.9), version: 0.3 2024-11-04T01:06:16,271 Skipping link: No binaries permitted for scdiffusion: https://files.pythonhosted.org/packages/74/d4/7d0d3ebcdec858a6c5af76953a6f155f8bdda27f01a200b6a1aeef1f7071/scDiffusion-0.3.1-py3-none-any.whl (from https://pypi.org/simple/scdiffusion/) (requires-python:<3.11,>=3.9) 2024-11-04T01:06:16,271 Found link https://files.pythonhosted.org/packages/65/3e/3f76a28e7b113a3b60467c8554360d0209b9ef6b5367f3f71b4043b10314/scDiffusion-0.3.1.tar.gz (from https://pypi.org/simple/scdiffusion/) (requires-python:<3.11,>=3.9), version: 0.3.1 2024-11-04T01:06:16,272 Fetching project page and analyzing links: https://www.piwheels.org/simple/scdiffusion/ 2024-11-04T01:06:16,272 Getting page https://www.piwheels.org/simple/scdiffusion/ 2024-11-04T01:06:16,273 Found index url https://www.piwheels.org/simple/ 2024-11-04T01:06:16,528 Fetched page https://www.piwheels.org/simple/scdiffusion/ as text/html 2024-11-04T01:06:16,529 Skipping link: No binaries permitted for scdiffusion: https://www.piwheels.org/simple/scdiffusion/scDiffusion-0.3-py3-none-any.whl#sha256=0036eba7801b4720b0c242e16a9f8dd0e118e465418cf91e4084e0a27e389cad (from https://www.piwheels.org/simple/scdiffusion/) (requires-python:>=3.9, <3.11) 2024-11-04T01:06:16,529 Skipping link: not a file: https://www.piwheels.org/simple/scdiffusion/ 2024-11-04T01:06:16,530 Skipping link: not a file: https://pypi.org/simple/scdiffusion/ 2024-11-04T01:06:16,545 Given no hashes to check 1 links for project 'scdiffusion': discarding no candidates 2024-11-04T01:06:16,546 Collecting scdiffusion==0.3.1 2024-11-04T01:06:16,548 Created temporary directory: /tmp/pip-unpack-xlo7djjk 2024-11-04T01:06:16,565 Downloading scDiffusion-0.3.1.tar.gz (36 kB) 2024-11-04T01:06:16,643 Added scdiffusion==0.3.1 from https://files.pythonhosted.org/packages/65/3e/3f76a28e7b113a3b60467c8554360d0209b9ef6b5367f3f71b4043b10314/scDiffusion-0.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-oh9qazzk' 2024-11-04T01:06:16,645 Running setup.py (path:/tmp/pip-wheel-kb04a0h4/scdiffusion_d8ce4d1c35044e50a925653aaa462be7/setup.py) egg_info for package scdiffusion 2024-11-04T01:06:16,645 Created temporary directory: /tmp/pip-pip-egg-info-yqg_8g0a 2024-11-04T01:06:16,646 Preparing metadata (setup.py): started 2024-11-04T01:06:16,647 Running command python setup.py egg_info 2024-11-04T01:06:17,796 running egg_info 2024-11-04T01:06:17,826 creating /tmp/pip-pip-egg-info-yqg_8g0a/scDiffusion.egg-info 2024-11-04T01:06:17,827 writing /tmp/pip-pip-egg-info-yqg_8g0a/scDiffusion.egg-info/PKG-INFO 2024-11-04T01:06:17,831 writing dependency_links to /tmp/pip-pip-egg-info-yqg_8g0a/scDiffusion.egg-info/dependency_links.txt 2024-11-04T01:06:17,833 writing requirements to /tmp/pip-pip-egg-info-yqg_8g0a/scDiffusion.egg-info/requires.txt 2024-11-04T01:06:17,834 writing top-level names to /tmp/pip-pip-egg-info-yqg_8g0a/scDiffusion.egg-info/top_level.txt 2024-11-04T01:06:17,836 writing manifest file '/tmp/pip-pip-egg-info-yqg_8g0a/scDiffusion.egg-info/SOURCES.txt' 2024-11-04T01:06:17,927 reading manifest file '/tmp/pip-pip-egg-info-yqg_8g0a/scDiffusion.egg-info/SOURCES.txt' 2024-11-04T01:06:17,932 writing manifest file '/tmp/pip-pip-egg-info-yqg_8g0a/scDiffusion.egg-info/SOURCES.txt' 2024-11-04T01:06:18,020 Preparing metadata (setup.py): finished with status 'done' 2024-11-04T01:06:18,025 Source in /tmp/pip-wheel-kb04a0h4/scdiffusion_d8ce4d1c35044e50a925653aaa462be7 has version 0.3.1, which satisfies requirement scdiffusion==0.3.1 from https://files.pythonhosted.org/packages/65/3e/3f76a28e7b113a3b60467c8554360d0209b9ef6b5367f3f71b4043b10314/scDiffusion-0.3.1.tar.gz 2024-11-04T01:06:18,026 Removed scdiffusion==0.3.1 from https://files.pythonhosted.org/packages/65/3e/3f76a28e7b113a3b60467c8554360d0209b9ef6b5367f3f71b4043b10314/scDiffusion-0.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-oh9qazzk' 2024-11-04T01:06:18,037 Created temporary directory: /tmp/pip-unpack-0oe7488s 2024-11-04T01:06:18,038 Created temporary directory: /tmp/pip-unpack-xg6immk4 2024-11-04T01:06:18,039 Building wheels for collected packages: scdiffusion 2024-11-04T01:06:18,043 Created temporary directory: /tmp/pip-wheel-2l8s1rht 2024-11-04T01:06:18,043 Building wheel for scdiffusion (setup.py): started 2024-11-04T01:06:18,044 Destination directory: /tmp/pip-wheel-2l8s1rht 2024-11-04T01:06:18,044 Running command python setup.py bdist_wheel 2024-11-04T01:06:19,083 running bdist_wheel 2024-11-04T01:06:19,216 running build 2024-11-04T01:06:19,216 running build_py 2024-11-04T01:06:19,246 creating build/lib/scDiffusion 2024-11-04T01:06:19,248 copying scDiffusion/__init__.py -> build/lib/scDiffusion 2024-11-04T01:06:19,250 creating build/lib/scDiffusion/sc_integration 2024-11-04T01:06:19,251 copying scDiffusion/sc_integration/integration_graph.py -> build/lib/scDiffusion/sc_integration 2024-11-04T01:06:19,255 copying scDiffusion/sc_integration/integration_DIF.py -> build/lib/scDiffusion/sc_integration 2024-11-04T01:06:19,257 copying scDiffusion/sc_integration/__init__.py -> build/lib/scDiffusion/sc_integration 2024-11-04T01:06:19,259 copying scDiffusion/sc_integration/Harmony.py -> build/lib/scDiffusion/sc_integration 2024-11-04T01:06:19,262 creating build/lib/scDiffusion/utils 2024-11-04T01:06:19,263 copying scDiffusion/utils/utility_fn.py -> build/lib/scDiffusion/utils 2024-11-04T01:06:19,265 copying scDiffusion/utils/__init__.py -> build/lib/scDiffusion/utils 2024-11-04T01:06:19,267 copying scDiffusion/utils/umap_fn.py -> build/lib/scDiffusion/utils 2024-11-04T01:06:19,269 copying scDiffusion/utils/info_log.py -> build/lib/scDiffusion/utils 2024-11-04T01:06:19,271 creating build/lib/scDiffusion/diffusion 2024-11-04T01:06:19,272 copying scDiffusion/diffusion/graph_DIF.py -> build/lib/scDiffusion/diffusion 2024-11-04T01:06:19,275 copying scDiffusion/diffusion/__init__.py -> build/lib/scDiffusion/diffusion 2024-11-04T01:06:19,276 copying scDiffusion/diffusion/gnd.py -> build/lib/scDiffusion/diffusion 2024-11-04T01:06:19,279 copying scDiffusion/diffusion/feature_encoder.py -> build/lib/scDiffusion/diffusion 2024-11-04T01:06:19,282 creating build/lib/scDiffusion/sc_analysis 2024-11-04T01:06:19,283 copying scDiffusion/sc_analysis/trajectory.py -> build/lib/scDiffusion/sc_analysis 2024-11-04T01:06:19,286 copying scDiffusion/sc_analysis/preprocess.py -> build/lib/scDiffusion/sc_analysis 2024-11-04T01:06:19,287 copying scDiffusion/sc_analysis/trajectory_plot.py -> build/lib/scDiffusion/sc_analysis 2024-11-04T01:06:19,290 copying scDiffusion/sc_analysis/__init__.py -> build/lib/scDiffusion/sc_analysis 2024-11-04T01:06:19,291 copying scDiffusion/sc_analysis/annotation.py -> build/lib/scDiffusion/sc_analysis 2024-11-04T01:06:19,293 copying scDiffusion/sc_analysis/clustering.py -> build/lib/scDiffusion/sc_analysis 2024-11-04T01:06:19,296 creating build/lib/scDiffusion/sc_graph 2024-11-04T01:06:19,297 copying scDiffusion/sc_graph/__init__.py -> build/lib/scDiffusion/sc_graph 2024-11-04T01:06:19,299 copying scDiffusion/sc_graph/graph_attention.py -> build/lib/scDiffusion/sc_graph 2024-11-04T01:06:19,301 copying scDiffusion/sc_graph/graph_modularity.py -> build/lib/scDiffusion/sc_graph 2024-11-04T01:06:19,303 copying scDiffusion/sc_graph/build_graph.py -> build/lib/scDiffusion/sc_graph 2024-11-04T01:06:19,338 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-11-04T01:06:19,338 !! 2024-11-04T01:06:19,338 ******************************************************************************** 2024-11-04T01:06:19,338 Please avoid running ``setup.py`` directly. 2024-11-04T01:06:19,339 Instead, use pypa/build, pypa/installer or other 2024-11-04T01:06:19,339 standards-based tools. 2024-11-04T01:06:19,339 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-11-04T01:06:19,339 ******************************************************************************** 2024-11-04T01:06:19,339 !! 2024-11-04T01:06:19,340 self.initialize_options() 2024-11-04T01:06:19,363 installing to build/bdist.linux-armv7l/wheel 2024-11-04T01:06:19,363 running install 2024-11-04T01:06:19,389 running install_lib 2024-11-04T01:06:19,415 creating build/bdist.linux-armv7l/wheel 2024-11-04T01:06:19,417 creating build/bdist.linux-armv7l/wheel/scDiffusion 2024-11-04T01:06:19,419 creating build/bdist.linux-armv7l/wheel/scDiffusion/sc_integration 2024-11-04T01:06:19,420 copying build/lib/scDiffusion/sc_integration/integration_graph.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_integration 2024-11-04T01:06:19,423 copying build/lib/scDiffusion/sc_integration/integration_DIF.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_integration 2024-11-04T01:06:19,425 copying build/lib/scDiffusion/sc_integration/__init__.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_integration 2024-11-04T01:06:19,427 copying build/lib/scDiffusion/sc_integration/Harmony.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_integration 2024-11-04T01:06:19,430 creating build/bdist.linux-armv7l/wheel/scDiffusion/utils 2024-11-04T01:06:19,431 copying build/lib/scDiffusion/utils/utility_fn.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/utils 2024-11-04T01:06:19,433 copying build/lib/scDiffusion/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/utils 2024-11-04T01:06:19,435 copying build/lib/scDiffusion/utils/umap_fn.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/utils 2024-11-04T01:06:19,436 copying build/lib/scDiffusion/utils/info_log.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/utils 2024-11-04T01:06:19,439 creating build/bdist.linux-armv7l/wheel/scDiffusion/diffusion 2024-11-04T01:06:19,440 copying build/lib/scDiffusion/diffusion/graph_DIF.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/diffusion 2024-11-04T01:06:19,442 copying build/lib/scDiffusion/diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/diffusion 2024-11-04T01:06:19,444 copying build/lib/scDiffusion/diffusion/gnd.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/diffusion 2024-11-04T01:06:19,447 copying build/lib/scDiffusion/diffusion/feature_encoder.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/diffusion 2024-11-04T01:06:19,449 copying build/lib/scDiffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./scDiffusion 2024-11-04T01:06:19,451 creating build/bdist.linux-armv7l/wheel/scDiffusion/sc_analysis 2024-11-04T01:06:19,452 copying build/lib/scDiffusion/sc_analysis/trajectory.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_analysis 2024-11-04T01:06:19,455 copying build/lib/scDiffusion/sc_analysis/preprocess.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_analysis 2024-11-04T01:06:19,457 copying build/lib/scDiffusion/sc_analysis/trajectory_plot.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_analysis 2024-11-04T01:06:19,459 copying build/lib/scDiffusion/sc_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_analysis 2024-11-04T01:06:19,460 copying build/lib/scDiffusion/sc_analysis/annotation.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_analysis 2024-11-04T01:06:19,463 copying build/lib/scDiffusion/sc_analysis/clustering.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_analysis 2024-11-04T01:06:19,465 creating build/bdist.linux-armv7l/wheel/scDiffusion/sc_graph 2024-11-04T01:06:19,466 copying build/lib/scDiffusion/sc_graph/__init__.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_graph 2024-11-04T01:06:19,468 copying build/lib/scDiffusion/sc_graph/graph_attention.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_graph 2024-11-04T01:06:19,470 copying build/lib/scDiffusion/sc_graph/graph_modularity.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_graph 2024-11-04T01:06:19,472 copying build/lib/scDiffusion/sc_graph/build_graph.py -> build/bdist.linux-armv7l/wheel/./scDiffusion/sc_graph 2024-11-04T01:06:19,474 running install_egg_info 2024-11-04T01:06:19,506 running egg_info 2024-11-04T01:06:19,532 writing scDiffusion.egg-info/PKG-INFO 2024-11-04T01:06:19,535 writing dependency_links to scDiffusion.egg-info/dependency_links.txt 2024-11-04T01:06:19,537 writing requirements to scDiffusion.egg-info/requires.txt 2024-11-04T01:06:19,539 writing top-level names to scDiffusion.egg-info/top_level.txt 2024-11-04T01:06:19,572 reading manifest file 'scDiffusion.egg-info/SOURCES.txt' 2024-11-04T01:06:19,579 writing manifest file 'scDiffusion.egg-info/SOURCES.txt' 2024-11-04T01:06:19,580 Copying scDiffusion.egg-info to build/bdist.linux-armv7l/wheel/./scDiffusion-0.3.1-py3.9.egg-info 2024-11-04T01:06:19,591 running install_scripts 2024-11-04T01:06:19,609 creating build/bdist.linux-armv7l/wheel/scDiffusion-0.3.1.dist-info/WHEEL 2024-11-04T01:06:19,612 creating '/tmp/pip-wheel-2l8s1rht/scDiffusion-0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-11-04T01:06:19,614 adding 'scDiffusion/__init__.py' 2024-11-04T01:06:19,616 adding 'scDiffusion/diffusion/__init__.py' 2024-11-04T01:06:19,617 adding 'scDiffusion/diffusion/feature_encoder.py' 2024-11-04T01:06:19,621 adding 'scDiffusion/diffusion/gnd.py' 2024-11-04T01:06:19,623 adding 'scDiffusion/diffusion/graph_DIF.py' 2024-11-04T01:06:19,625 adding 'scDiffusion/sc_analysis/__init__.py' 2024-11-04T01:06:19,627 adding 'scDiffusion/sc_analysis/annotation.py' 2024-11-04T01:06:19,628 adding 'scDiffusion/sc_analysis/clustering.py' 2024-11-04T01:06:19,629 adding 'scDiffusion/sc_analysis/preprocess.py' 2024-11-04T01:06:19,631 adding 'scDiffusion/sc_analysis/trajectory.py' 2024-11-04T01:06:19,633 adding 'scDiffusion/sc_analysis/trajectory_plot.py' 2024-11-04T01:06:19,634 adding 'scDiffusion/sc_graph/__init__.py' 2024-11-04T01:06:19,636 adding 'scDiffusion/sc_graph/build_graph.py' 2024-11-04T01:06:19,637 adding 'scDiffusion/sc_graph/graph_attention.py' 2024-11-04T01:06:19,639 adding 'scDiffusion/sc_graph/graph_modularity.py' 2024-11-04T01:06:19,641 adding 'scDiffusion/sc_integration/Harmony.py' 2024-11-04T01:06:19,643 adding 'scDiffusion/sc_integration/__init__.py' 2024-11-04T01:06:19,644 adding 'scDiffusion/sc_integration/integration_DIF.py' 2024-11-04T01:06:19,647 adding 'scDiffusion/sc_integration/integration_graph.py' 2024-11-04T01:06:19,649 adding 'scDiffusion/utils/__init__.py' 2024-11-04T01:06:19,650 adding 'scDiffusion/utils/info_log.py' 2024-11-04T01:06:19,651 adding 'scDiffusion/utils/umap_fn.py' 2024-11-04T01:06:19,653 adding 'scDiffusion/utils/utility_fn.py' 2024-11-04T01:06:19,656 adding 'scDiffusion-0.3.1.dist-info/METADATA' 2024-11-04T01:06:19,656 adding 'scDiffusion-0.3.1.dist-info/WHEEL' 2024-11-04T01:06:19,657 adding 'scDiffusion-0.3.1.dist-info/top_level.txt' 2024-11-04T01:06:19,659 adding 'scDiffusion-0.3.1.dist-info/RECORD' 2024-11-04T01:06:19,660 removing build/bdist.linux-armv7l/wheel 2024-11-04T01:06:19,759 Building wheel for scdiffusion (setup.py): finished with status 'done' 2024-11-04T01:06:19,762 Created wheel for scdiffusion: filename=scDiffusion-0.3.1-py3-none-any.whl size=41327 sha256=7923c0fa80e9377a28cfdd369befa56baee47f4d79905782126215f49dbf3624 2024-11-04T01:06:19,763 Stored in directory: /tmp/pip-ephem-wheel-cache-ikn3n449/wheels/9e/5a/99/61dd621ccd29b67c6113d9dcbfb1f6be87093de3fce6698c66 2024-11-04T01:06:19,774 Successfully built scdiffusion 2024-11-04T01:06:19,786 Removed build tracker: '/tmp/pip-build-tracker-oh9qazzk'